ID:

dvi_15559

 Coordinate:

scaffold_13047:4410387-4410537 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.8 -11.5 -11.1

Flybase annnotation

exon [dvir_GLEANR_8715:3]; CDS [Dvir\GJ23358-cds]; intron [Dvir\GJ23358-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#######################---------------------------
TCTTGATGAAAACAGAATAAATTGCCAGACAAGAACCTGCTCTTCGACAAAATGTTCCTACGGTAACTATATGATATAGAGGTCTGCTGTTGCTAGGATAAGCAGGGAACATGGCGAAACTAATAAATGCAGAGTTTAGTCAAGGTAACTTGATACAAGAACCTACCTATGACAGCTATATGATATAGTTGTCCGATTTAGTTGGTTTCGGCAAGCTGATCTAGAATATATATATTTCATCGATCTAGGCT
*************************************************************************************.................((((..((.((((.(((((...........))))).))))..))..))))........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M061
embryo
 M047
female body
 M027
male body		 SRR060676
9xArg_ovaries_total
 V053
head
 V047
embryo
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
.......................................................................................................................................................................................................................................ATATTTCATCGATCTAGGC. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GATTTAGTTGGTTTCGGCAAGCTGAT............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTAGTTGGTTTCGGCAAGCT.................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................TGCCAGACAAGAACCTGCTCTTCGACA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................GTTTAGTCAAGGTAACTTGATACAAGA........................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................GGTAGGATAAGCAGGGAACATGGC........................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................ATTGCCAGACAAGAGCCTGCT.................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................AAATGCAGAGTTTAGTCAAGGTAACTTG................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................TGCTCTTCGACAAAATGTT................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................GTAGAGGTCTGCTGTTGCTAGG.......................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................GCTGTTGCTAGGATAAGCAGG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................AGAGGTCTGCTGTTGCTAGGA......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................TGCCAGACAAGAACCTGCTCT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................GATAAGCAGGGAACATGGCGA...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................TAACTATATGATATAGAGGTCTGC.................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................CAAAATGTTCCTACGGTAACTATATG.................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........AACAGATTAAATTGACAGAC............................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................GATTCGGCAAGCTGAT............................... 16 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................GCAACTTGATCTAGAAGATAT.................... 21 3 14 0.14 2 0 0 0 0 0 0 0 0 0 1 1
..................................................................................................TAAGCAGGAAAAATGGCG....................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGAACTACTTTTGTCTTATTTAACGGTCTGTTCTTGGACGAGAAGCTGTTTTACAAGGATGCCATTGATATACTATATCTCCAGACGACAACGATCCTATTCGTCCCTTGTACCGCTTTGATTATTTACGTCTCAAATCAGTTCCATTGAACTATGTTCTTGGATGGATACTGTCGATATACTATATCAACAGGCTAAATCAACCAAAGCCGTTCGACTAGATCTTATATATATAAAGTAGCTAGATCCGA
*******************************************************************************************.................((((..((.((((.(((((...........))))).))))..))..))))........************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060680
 9xArg_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
.........................GTCTGTTCTTGGACGAGAAGC............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................TTCGTTGGATACTGTCGATATACTAT.................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0
...........................................................TGCCATTGGTATACTATATCT........................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................CTGTTTTACAAGGATGCCATT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................TCGTTGGATACTGTCGATATACTAT.................................................................. 25 2 2 0.50 1 0 0 1 0 0 0 0
.............................GTTCTTGGACATGAAGCT............................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 1 0 0 0
.....................................................................................................................................................................GGATACTGTCGATATACTATATCAA............................................................. 25 0 12 0.08 1 0 0 1 0 0 0 0
................TGTTTAACGGTCTGTTGTT........................................................................................................................................................................................................................ 19 2 14 0.07 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................TTCAACTAGATATTATATAT................... 20 2 20 0.05 1 0 0 0 0 0 1 0
.........................................................................................................................................................................ACTGTCGATATACTATATCAACAGGT........................................................ 26 1 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:4410337-4410587 - dvi_15559 TCTTGATGAAAACA------------------------------GAATAAATTGCCAGACAAGAACC----TGCTCTTCGACAAA-ATGTTCCTACGGTAACTATATGATATAGAGGTCTG-CTGTTGCTAGGATAAGCAGGGAACATGG-CGA----------------------------AACTAATA---AAT-------------GCAGAGTTTAGTCAAG----------------GT---------------------AACTTGATACA----AGAACCTACCTATGACAGCTATATGATATAGTTGTCCGATTTAGTTGGTTT----C-------GGC-------------------------------------------------------------------------------------------------------------------------------------AAGCTGAT------------------CTAGAATA-----------------TATATATTTCATCGATCTAGGCT---
droGri2 scaffold_15074:4012488-4012741 + TCTTGATTTGG-----------------ATAACA-AGCTAAACACAAAAGTTGCTCATACGAAAGCT----TATCTTTCGACTGT-TTTTTTCAACGTTTGCTATATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGGTTATCCGATCTAGCCGGCTC----A-------GATATAT---------GCAGC--AAAAAGACGCATATATTCCAAGTTTCATCAAGAGCGCTTCAAGACTGAGAGACAAGTTGTTATAGAAACAGATA--------------------------GACTCTGTTAGTGATGCTGAT------------------CAAGAGTATA---------------TATATACTTTATGGAG-TCAGAGACT
droWil2 scf2_1100000004516:2192226-2192492 + GCTTCAAAA-------------------GTAACGAAG----------TTA-TTGAC---AAAAGTCA----CTGTTTTCAACCGA-TCGTTCCTATGGGAGCTATATGATATAGTAACCCGATCTTTATCAAATTCAAAACAG-TCATTAACAGATAT-----------ATTA---------AACTAACA---AAT-------------GTTTAATTTGAAAGTTATTGACAAAA------GTC---ACTGTTT--------------------TCGAAAGATCGTTCCTATGGGAGCTATATGATATAGTCACCCGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGCATAGTCGTTT---ATATGTGTAATTAACTCAACAATAT-----------------T---
droAna3 scaffold_9723:12513-12743 - TTTATTTGCAG-----------------ACAACG----TG----AAACGG-TTGACAGTCA-------------TTTGCAA--GCTCTGGTTATATGGCAGCTATAAGATATAGCCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG--GAAAAGAAGGATGTGTGCAAAGTTTCAACTAGATAGCTTTAAAACTGAGAGACTAGTTAGCGTAGAAACAGACAGACGGGCAGACCGATAT-GCTATATCGACAAAGGAGGTGATTCTGAT------------------CAAGAATA-----------------TATATACTTTATAGGG-TCGGAG---
droBip1 scf7180000391788:2782-3040 + AA--------GGCG------------------------------AAATAGTT-TCCCGGCAAAAACACTAATCGTTTTACACTGA-ATGTTTCTATGGCAGCTATAACCTATAGTATCCAGATTTTTACTGAAGTTTCCCAGG-TTATATACGAAAAT--------------------------------------------TTTCAAAGTATTGTTGCATCAAAA-TGAAGAACAATAA-----------ATTTTCATATAAAAACTGAATATGAGATCGATTGCTTATGTGGCAGCTATATGATATAGTTGTCCGATCTGGCAGATTT----T-------AACATA-------------------------------------------------------------------------------------------------------------------------------------TTAAT------------------TTAGGATA-----------------AATATA--------------------
droKik1 scf7180000302486:2433039-2433334 + CGTTGAAAA-------------------ACAACGAATATA----TAATTT-TTTTCTATTA-------------A--TTTCCCGA-TCGTTCCTATGGCAGCTATATGATATAGTCGTCCGATTTTCATAAAATTTA------------TACCAAAATTCAGAAATAATATAAAATGGCCATATCTAAAA---A------------------ATGGTGCAAAAATGTTGAAAAACAGCAAAGTTATAATTTTTT--TCT--AAAAA--------TATATCGAACATTTGTATGGCAGCTATATGATATAGTCGTCCGATCCGGCCCGTTT----C-------GACATATATAGCAGTGAGAGC--ATATAGA--------------------------------------------------------------------------------------------------------------------------------------AGAC---------------------TATATATCATTGAGATAG------
droFic1 scf7180000454039:384130-384378 + GA-------------------------------------------AATAGTT-TCCCGGCGAAAACT----CG-TTTTACACTGA-TTGTTCCTATGGCAGTTATAACCTATAGTATCAAGATTTTTACTGAAGTTTCCCAGG-TTATATACGAAAAT--------------------------------------------TTCCAAATTATTGTTGCTTCAAAA-TGAAAAACAATAG-----------TTTTTCATAAAAAAACTGAATATCAGACTGATTGTTCATATGGCAGCTATATGATATAGTTGCCCGATCTGGCTGATTT----T-------TACATA-------------------------------------------------------------------------------------------------------------------------------------TTATT------------------TTAGGATA-----------------AATATA--------------------
droEle1 scf7180000490420:41253-41519 - TCTAGAAAA-ACTAAAAAAAATTAAAAAACACC---------------------------AAATTTA----ATTTTTTTGTCCGA-TTGTTCCTATGGTAGTTGTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGTCGTCCGATCCGGCTCGATC----C-------GACTTATATACTAC---CAAT--ATAAAAACAACTTTTGGGAAAGTTTCATGCAGATATCTTTATAACTGAGAGACTAGTTTGCGTAGAAACGGACGG----ACAGACGGACATGGCTAGATCGACTCTCCTAGTGATGCTGAT------------------CAAGAATA-----------------TATATACTTTACAGGG-TCGGAG---
droRho1 scf7180000776814:2312-2546 + GTTTGATGTCAATT------------------------------GC-----TTTTATA----CTGCT----ATGTCATATAACAA-TTTTTCCTACGGAAGCTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTCCGATCGG-CAAGCGCTACCCTAATCAAGATA-----------TGCG-TAAATAAATAAGA--CTTGGCAAAATTTATGTCA-GTAGCT--------TACACAC------ACGGACG----GACAGACATACAGACGGACATGGCTATATCGAATCCTCTATTGATCCTGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---
droBia1 scf7180000302098:119627-119875 - TTTGGATGG-G-----------------ACATCG-------------AAATTTATCAAATGAGGTTT--------TTTTCCCCGA-TAGTTCCTATGGGAGCTATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAATTGTCTGATCCGGCTGGTTC----C-------GACTTATATACTACTTGCAAT--AGAAAAAAGAAAGTTGGGAAAGTTTCAGCCCGATAGC--------TGATAGACTAGTTTGCGTAGAAACGGACAG----GCAGACGGACATGGCT------ACTCGTCTTGTGACGCTGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGAAA---
droTak1 scf7180000414441:10151-10404 + TTTTAAAAA-------------------ACACCGAAG---------------------CTAGAATTA----AGTTTTTTTTCCGA-TCCTTCCTATGGGAGCTATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGTTGTCCGATCCGGTCGGTTC----C-------GATATATATACTACCTGCAAT--AGAAAGAAGACTTTTGCGAAAGTTTCGTCCCGATAGCTCAAAAACTTAGAGACTAGTTTGCGTAGAAACAGA--------CAGACGGACATGGCTAGATCGACTCGTCTTGTGATGCCGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---
droEug1 scf7180000407790:2071-2105 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT------------------TAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---
droSim2 3l:20463742-20463961 + AACA----------------------------------------AAATGATTTTTCAAACAAAAGCA----CGATTTTCGAATGA-TTGTTCCTATAGCAGCTATATGA-ATAGCATAC-AATTTTCGCTAAGCTCGCCGTGG-ATATGTACA-------------------------------CTAATTTCTTATGTAGAATTCCAAGTTTTCGTTGCAAAATAATTGAAAA-------------------------------CACTTAATTTCAAACTGATCGTTCATATGACAGCTATATGATATAGTGGTCCGATCTGGCTGATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_101:68057-68304 + TATTGTTTGCAACA------------------------------AAATCATTTTTCAATCAAAATCA----CGATTTTCGACTGA-TTGTTCCTATAGCACCTATATGATATAGCATAC-AATTTTCGCTAAGCTCACCCTGG-ATATATATA-----------------------------TACCAATTTCTTATGTAGAATTCCAAGTTTTCGTTGCAAAATAATTGAAAAAAAAAAG-----------TTTTCCATACTAACACTTAATTT-----TAATCGTTCGTATGACAGCTATATGATATAGTGGTCCGATCAAGCTGATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCTTGATGAAAACA------------------------------GAATAAATTGCCAGACAAGAACC----TGCTCTTCGACAAA-ATGTTCCTACGGTAACTATATGATATAGAGGTCTG-CTGTTGCTAGGATAAGCAGGGAACATGG-CGA----------------------------AACTAATA---AAT-------------GCAGAGTTTAGTCAAG----------------GT---------------------AACTTGATACA----AGAACCTACCTATGACAGCTATATGATATAGTTGTCCGATTTAGTTGGTTT----C-------GGC-------------------------------------------------------------------------------------------------------------------------------------AAGCTGAT------------------CTAGAATA-----------------TATATATTTCATCGATCTAGGCT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCATCGATCTAGGC....1911.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATTTAGTTGGTTT----C-------GGC-------------------------------------------------------------------------------------------------------------------------------------AAGCTGAT------------------...................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................TTTAGTTGGTTT----C-------GGC-------------------------------------------------------------------------------------------------------------------------------------AAGCT........................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................TGCCAGACAAGAACC----TGCTCTTCGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GTTTAGTCAAG----------------GT---------------------AACTTGATACA----AGA.................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A---AAT-------------GCAGAGTTTAGTCAAG----------------GT---------------------AACTTG.............................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................TGCTCTTCGACAAA-ATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................G-CTGTTGCTAGGATAAGCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................AGAGGTCTG-CTGTTGCTAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................TGCCAGACAAGAACC----TGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GATAAGCAGGGAACATGG-CGA----------------------------.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................TAACTATATGATATAGAGGTCTG-C................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAA-ATGTTCCTACGGTAACTATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
droGri2
TCTTGATTTGG-----------------ATAACA-AGCTAAACACAAAAGTTGCTCATACGAAAGCT----TATCTTTCGACTGT-TTTTTTCAACGTTTGCTATATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGGTTATCCGATCTAGCCGGCTC----A-------GATATAT---------GCAGC--AAAAAGACGCATATATTCCAAGTTTCATCAAGAGCGCTTCAAGACTGAGAGACAAGTTGTTATAGAAACAGATA--------------------------GACTCTGTTAGTGATGCTGAT------------------CAAGAGTATA---------------TATATACTTTATGGAG-TCAGAGACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCTTCAAAA-------------------GTAACGAAG----------TTA-TTGAC---AAAAGTCA----CTGTTTTCAACCGA-TCGTTCCTATGGGAGCTATATGATATAGTAACCCGATCTTTATCAAATTCAAAACAG-TCATTAACAGATAT-----------ATTA---------AACTAACA---AAT-------------GTTTAATTTGAAAGTTATTGACAAAA------GTC---ACTGTTT--------------------TCGAAAGATCGTTCCTATGGGAGCTATATGATATAGTCACCCGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGCATAGTCGTTT---ATATGTGTAATTAACTCAACAATAT-----------------T---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................TCACCCGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGC...........................................................25200.15303000
...............................................................................AACCGA-TCGTTCCTATGGGAGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300030
...................................................................................................................................................................................................................................................C---ACTGTTT--------------------TCGAAAGATCGT.............................................................................................................................................................................................................................................................................20200.10202000
.........................................................................................................................................................................................................................................................TGTTT--------------------TCGAAAGATCGTTCC..........................................................................................................................................................................................................................................................................20200.10220000
........................................................................................................TATGATATAGTAACCCGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
............................................................................TTCAACCGA-TCGTTCCTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.................................................................CA----CTGTTTTCAACCGA-TCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.....................................................GAC---AAAAGTCA----CTGTTTTCAACCGA-TCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
............................................................................TTCAACCGA-TCGTTCCTATGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
...............................................................................AACCGA-TCGTTCCTATGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.............................................................................................................................................................................................................................................................................................................................ATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGCATA........................................................21200.05100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATATGTGTAATTAACTCAACAATAT-----------------....26200.05101000
................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGCATAGTCG....................................................22200.05101000
...............................................................................AACCGA-TCGTTCCTATGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...............................................................................AACCGA-TCGTTCCTATGGGAGCTATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
..............................................................................................................................................................................................................................................................................................................................TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCAAATTTGGCATAGTCG....................................................24200.05101000
...............................................................................AACCGA-TCGTTCCTATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
droAna3
TTTATTTGCAG-----------------ACAACG----TG----AAACGG-TTGACAGTCA-------------TTTGCAA--GCTCTGGTTATATGGCAGCTATAAGATATAGCCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG--GAAAAGAAGGATGTGTGCAAAGTTTCAACTAGATAGCTTTAAAACTGAGAGACTAGTTAGCGTAGAAACAGACAGACGGGCAGACCGATAT-GCTATATCGACAAAGGAGGTGATTCTGAT------------------CAAGAATA-----------------TATATACTTTATAGGG-TCGGAG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGACTAGTTAGCGT...............................................................................................................................18120.172200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGACTAGTTAGCGTAGAAAC.........................................................................................................................24100.101010000
..................................................................................................................................................................................................................................................................................................................................................................................GAAGGATGTGTGCAAAGTTTCAAC.................................................................................................................................................................24200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGATGTGTGCAAAG........................................................................................................................................................................20200.102000020
........................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAGACTAGTTAGCGTA..............................................................................................................................21110.091100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGAGAGACTAGTTAGCGTA..............................................................................................................................24110.091100000
droBip1
AA--------GGCG------------------------------AAATAGTT-TCCCGGCAAAAACACTAATCGTTTTACACTGA-ATGTTTCTATGGCAGCTATAACCTATAGTATCCAGATTTTTACTGAAGTTTCCCAGG-TTATATACGAAAAT--------------------------------------------TTTCAAAGTATTGTTGCATCAAAA-TGAAGAACAATAA-----------ATTTTCATATAAAAACTGAATATGAGATCGATTGCTTATGTGGCAGCTATATGATATAGTTGTCCGATCTGGCAGATTT----T-------AACATA-------------------------------------------------------------------------------------------------------------------------------------TTAAT------------------TTAGGATA-----------------AATATA--------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGTTGAAAA-------------------ACAACGAATATA----TAATTT-TTTTCTATTA-------------A--TTTCCCGA-TCGTTCCTATGGCAGCTATATGATATAGTCGTCCGATTTTCATAAAATTTA------------TACCAAAATTCAGAAATAATATAAAATGGCCATATCTAAAA---A------------------ATGGTGCAAAAATGTTGAAAAACAGCAAAGTTATAATTTTTT--TCT--AAAAA--------TATATCGAACATTTGTATGGCAGCTATATGATATAGTCGTCCGATCCGGCCCGTTT----C-------GACATATATAGCAGTGAGAGC--ATATAGA--------------------------------------------------------------------------------------------------------------------------------------AGAC---------------------TATATATCATTGAGATAG------SizeHit CountTotal NormTotal
No Reads
droFic1
GA-------------------------------------------AATAGTT-TCCCGGCGAAAACT----CG-TTTTACACTGA-TTGTTCCTATGGCAGTTATAACCTATAGTATCAAGATTTTTACTGAAGTTTCCCAGG-TTATATACGAAAAT--------------------------------------------TTCCAAATTATTGTTGCTTCAAAA-TGAAAAACAATAG-----------TTTTTCATAAAAAAACTGAATATCAGACTGATTGTTCATATGGCAGCTATATGATATAGTTGCCCGATCTGGCTGATTT----T-------TACATA-------------------------------------------------------------------------------------------------------------------------------------TTATT------------------TTAGGATA-----------------AATATA--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCTAGAAAA-ACTAAAAAAAATTAAAAAACACC---------------------------AAATTTA----ATTTTTTTGTCCGA-TTGTTCCTATGGTAGTTGTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGTCGTCCGATCCGGCTCGATC----C-------GACTTATATACTAC---CAAT--ATAAAAACAACTTTTGGGAAAGTTTCATGCAGATATCTTTATAACTGAGAGACTAGTTTGCGTAGAAACGGACGG----ACAGACGGACATGGCTAGATCGACTCTCCTAGTGATGCTGAT------------------CAAGAATA-----------------TATATACTTTACAGGG-TCGGAG---SizeHit CountTotal NormTotal
No Reads
droRho1
GTTTGATGTCAATT------------------------------GC-----TTTTATA----CTGCT----ATGTCATATAACAA-TTTTTCCTACGGAAGCTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTCCGATCGG-CAAGCGCTACCCTAATCAAGATA-----------TGCG-TAAATAAATAAGA--CTTGGCAAAATTTATGTCA-GTAGCT--------TACACAC------ACGGACG----GACAGACATACAGACGGACATGGCTATATCGAATCCTCTATTGATCCTGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---SizeHit CountTotal NormTotal
No Reads
droBia1
TTTGGATGG-G-----------------ACATCG-------------AAATTTATCAAATGAGGTTT--------TTTTCCCCGA-TAGTTCCTATGGGAGCTATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAATTGTCTGATCCGGCTGGTTC----C-------GACTTATATACTACTTGCAAT--AGAAAAAAGAAAGTTGGGAAAGTTTCAGCCCGATAGC--------TGATAGACTAGTTTGCGTAGAAACGGACAG----GCAGACGGACATGGCT------ACTCGTCTTGTGACGCTGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGAAA---SizeHit CountTotal NormTotal
No Reads
droTak1
TTTTAAAAA-------------------ACACCGAAG---------------------CTAGAATTA----AGTTTTTTTTCCGA-TCCTTCCTATGGGAGCTATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGTTGTCCGATCCGGTCGGTTC----C-------GATATATATACTACCTGCAAT--AGAAAGAAGACTTTTGCGAAAGTTTCGTCCCGATAGCTCAAAAACTTAGAGACTAGTTTGCGTAGAAACAGA--------CAGACGGACATGGCTAGATCGACTCGTCTTGTGATGCCGAT------------------CAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---SizeHit CountTotal NormTotal
No Reads
droEug1
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT------------------TAAGAATA-----------------TATATACTTTATGGGG-TCGGAA---SizeHit CountTotal NormTotal
No Reads
droSim2
AACA----------------------------------------AAATGATTTTTCAAACAAAAGCA----CGATTTTCGAATGA-TTGTTCCTATAGCAGCTATATGA-ATAGCATAC-AATTTTCGCTAAGCTCGCCGTGG-ATATGTACA-------------------------------CTAATTTCTTATGTAGAATTCCAAGTTTTCGTTGCAAAATAATTGAAAA-------------------------------CACTTAATTTCAAACTGATCGTTCATATGACAGCTATATGATATAGTGGTCCGATCTGGCTGATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................CTTAATTTCAAACTGATCGT.............................................................................................................................................................................................................................................................................2091.00900009000000000000
..........................................................................................................................................................................................................................................................................CTTAATTTCAAACTGATCGTT............................................................................................................................................................................................................................................................................2190.89861000000001000000
...........................................................................................................................................................................................................TCCAAGTTTTCGTTGCAAAATAATTGAAA...................................................................................................................................................................................................................................................................................................................................2940.25100000000100000000
.........................................................................................................................................................................................TAATTTCTTATGTAGAATTCCAAGTT........................................................................................................................................................................................................................................................................................................................................................2650.20100000010000000000
.........................................................................................................................................................................................................ATTCCAAGTTTTCGTTGCA...............................................................................................................................................................................................................................................................................................................................................1950.20110000000000000000
.......................................................................................................................................................................................................................................................................................................AGCTATATGATATAGTGGTCCGATC...........................................................................................................................................................................................................................................2560.17100000010000000000
.................................................................................................................................................................................................................TTTTCGTTGCAAAATAATTGA.....................................................................................................................................................................................................................................................................................................................................2160.17100000001000000000
.......................................................................................................................................................................................................................................AA-------------------------------CACTTAATTTCAAACTGATCGTTCA..........................................................................................................................................................................................................................................................................2760.17100000000000010000
............................................................................................................................................................................................................................................................................TAATTTCAAACTGATCGTTCATATGAC....................................................................................................................................................................................................................................................................2780.13100000000000010000
.......................................................................................................................................................................................................................................AA-------------------------------CACTTAATTTCAAACTGATCGTT............................................................................................................................................................................................................................................................................2580.13100100000000000000
............................................................................................................................................................................................................................................................................TAATTTCAAACTGATCGTT............................................................................................................................................................................................................................................................................19100.10110000000000000000
.........................................................................................................................ATTTTCGCTAAGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................15110.09100000000001000000
droSec2
TATTGTTTGCAACA------------------------------AAATCATTTTTCAATCAAAATCA----CGATTTTCGACTGA-TTGTTCCTATAGCACCTATATGATATAGCATAC-AATTTTCGCTAAGCTCACCCTGG-ATATATATA-----------------------------TACCAATTTCTTATGTAGAATTCCAAGTTTTCGTTGCAAAATAATTGAAAAAAAAAAG-----------TTTTCCATACTAACACTTAATTT-----TAATCGTTCGTATGACAGCTATATGATATAGTGGTCCGATCAAGCTGATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/19/2015 at 07:16 PM