ID:

dvi_15555

 Coordinate:

scaffold_13047:4392605-4392755 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.7 -11.6 -11.0

Flybase annnotation

CDS [Dvir\GJ23359-cds]; exon [dvir_GLEANR_8716:4]; intron [Dvir\GJ23359-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAACGGCAGCGACTGCGGCAGGTGTGTCACAGCAGACAGCTTCCAAATTACCACACAACAAAAACAACAGTAATAATGGGAAATTAAGCGTGCGCTTTGACCCAAATCTGCCCGATAATGACAGCAATAACAACAACAGCAGCAGCAGAGAGAGAAAAGGCGAGAACATTGGCGGCAGCTATGACAGCTTGCATGCGAAGGTTGCGCGCAAGGCGCGCTCTCTCAGCAATTCGCCGCTATACAGAAAGAA
****************************************************************************...................((((........(((((.................................))))).......))))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 V047
embryo
 SRR060655
9x160_testes_total
 SRR060664
9_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR1106730
embryo_16-30h
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
............................................................................ATGGGAAATTAAGCGTGCG............................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCTCTCAGCAATTCGCCGCT............ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................CAGCAGAGAGAGAAAAGG.......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................ACAGTAATAATGGGAAATTAAGCGTGC............................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................ATGGGAAATTAAGCGTGCGCT.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAAATTAAGCGTGCGCTTTGACCCAAAT............................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................GACCCAAATCTGCCCGATAATGACA............................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAAGGTTGCGTGCAAGGCG................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................AATGGGAAATTAAGCGTGCGCTTTGAC..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAAGGCGAGAACATTGGCGGCAG........................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................CCACACAACAAAAACAACAGT................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................GAGAACATTGGCGGCAGCTATGAC................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........GACTGCGGCAGGTGTGTCACAGC......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGAACATTGGCGGCAGCT...................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CAACAGCAGCAGCAGAGAGAGAA.............................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................AGTAATAATGGGAAATTAAG.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAGCAATTCGCCGCTATACAGAA.... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................ATAATGGGAAATTAAGCGTGCGCT.......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAAAGGCGAGAACATTTGCGGC.......................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................ATAATGGGAAATTAAGCGTGCGCTTT........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GAGAGAGAAAAGGCGAGAACATTGGCG............................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................AATAACAACAACAGCAGCAGCAGA..................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAACGATGACAGCTTGTATGC...................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................GAACTTTGGCGGCTGGTATG................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................ACAGTCATGATGGGAAATCA.................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AACAACAACAGCAGCAGCAGAG.................................................................................................... 22 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................ACAACAACAGCAGCAGCAG...................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
................................................................................GAAATTAGGCGAGCGCTT......................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................CTGACCGATGATGCCAGCAA........................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTTGCCGTCGCTGACGCCGTCCACACAGTGTCGTCTGTCGAAGGTTTAATGGTGTGTTGTTTTTGTTGTCATTATTACCCTTTAATTCGCACGCGAAACTGGGTTTAGACGGGCTATTACTGTCGTTATTGTTGTTGTCGTCGTCGTCTCTCTCTTTTCCGCTCTTGTAACCGCCGTCGATACTGTCGAACGTACGCTTCCAACGCGCGTTCCGCGCGAGAGAGTCGTTAAGCGGCGATATGTCTTTCTT
******************************************************************************************...................((((........(((((.................................))))).......))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060681
Argx9_testes_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 V047
embryo
 V053
head
 SRR060669
160x9_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
......................................................................................................................................................................................................................................AAGCGGCGATATGGGTTT... 18 2 10 17.00 170 168 0 0 0 0 0 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGGCTTT... 18 2 3 6.33 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGTGTTT... 18 2 20 3.00 60 60 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGGGTTTCT. 20 3 6 1.50 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGTTTTT... 18 2 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCGCACGCGAAACTGGGTTT................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCGCACGCGAAACTGGGTTTA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTGCCGTCGCTGACGCCGTCC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCGCGAGAGAGTCGTTAAGCGGC.............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCTCTTTTCCGCTCTTGTAAC............................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGGGTTTCTT 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ATTGTCGAAGGTTTAATGG...................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGAGGGAGTCCTTAACCGGCG............. 21 3 4 0.50 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGGCTTTA.. 19 3 20 0.40 8 4 0 0 0 0 0 0 0 0 0 1 1 1 1
..................................................................................................................................................................................................................................CGTAAAGTGGCGATATGT....... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGACTGCCGAACGTACGCTG................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................AGTGGCGTCCGTCGAAGGTGT........................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGTGATATGGCTTT... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGGGAGAAAGTCGTTAAG.................. 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCGTTAAGCGGGGTAATGTC...... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AGCGGGGATATGGGTTTCTT 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGCGATATGGGTTC... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGGGATATGTCTAG... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGCGGTGATATGGGTTTC.. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATTGTTGTTGTCGTCGTCGT....................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:4392555-4392805 - dvi_15555 ACA--ACGGCAG-------C---GACT---GCGGCAGGT------------------------GTGTCACA------------GCAGACAGCTTCCAAATTACCACACAACAA-------------------------------------------------------------------------------------AAACAACAGT---------AATAATG------G--------GAAATTAAGCGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAATAACAA---------------------C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--AGAGAGAAA------------AGGCGAGAACATT--GGCG----------------GCA----------------------GCTATGACAGCTTGCATGCGAAGG---TTGCGCGCAAGGCGCGCTCTCTCAGCAATTCGCCGCT-------------------------------ATA---CAGAAAGAA
droMoj3 scaffold_6540:21975884-21976143 + GCA--ACAGCGG-------C---AGCG---GCAGCGGCT---------------------GGCCTGCCACA------------GCAGACAGCTTCCAAATTACTACACAGCAA-------------------------------------------------------------------------------------CAACAGCAAT---------AACAATG------G--------GAAATTAAGCGTCCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCGACAAGAA---------------------C----------------------AACA------------------------------------------------------------------------------ACA---GTAGCA------------------A------AAGCAA--AGAGAGAAC------------CTATGAGAGCTTA--GGCG----------------GCA----------------------GCTATGACAGTTTGCACGCGAAGG---TTGCCCGCAAGGCGCGCTCTCTTAGCAATTCGCCGCT-------------------------------ATA---CCGAAAGAG
droGri2 scaffold_14906:9876276-9876550 - ACT--GCAAATG-------C---GAAT---CCGAATCCGAGTGCGAATGCGAATGCGTCAGGTGTGTCACA------------GCAGACAGCTTCCAAATTGCGACAAAGCAG-------------------------------------------------------------------------------------CAACAACAAT---------AATGGAA------A--------CAAATTAAGCGTGCGCTTTGACC--CAAATCTGCCCGATAATAATAATGACAGCAACAAC----------------------------------------------A---------------------------------------------------------------------------------ACAATAACAACA------------A------CAACAACAATTG--CGAGAGCA-----------------------------ACT----------------ACA----------------------ACTATGACAGTTTACATGCGAAGG---TTGCCCGCAAGGCGCGCTCTCTCAGTAATTCGCCGCT-------------------------------GTA---TCGCAAGAA
droWil2 scf2_1100000004943:15996366-15996607 + GCA--GCAGCAG-------C---AGCA---GCAACAACA---ACA---------------------ACAAG------------GAATGCAACAACCAAATTGCCCATCAGCAA-------------------------------------------------------------------------------------CAACAAAAATAGTAACAACAACAGCA------A--------CAAATTAAGCGTACGCTTTGACC--CAAATTTACCCGCCGACAAT---GACAACAACAACAA---------------------C----------------------A---------------------------------------------------------------------------------AAAATAGCCACG-------------------------------------------------------------------------ACAATG-----------------------------------GCAACAACAACCAAAATGCAAAAT---CTTCACGCAAAGCTCGCTCTCTGAGCAATTCTCCGCA-------------------------------ATATCATCGAAAGAA
dp5 2:25496316-25496579 - GGC--------------------------------------------------------GGGCGTTCCACATGTTGCTG---------CAACCTCCAAAGTGCTGCAAGGCAGCAGTCTCAGCCCCAGCCCCCACCACCACC------ACCACC----A---------------------------------------------CCAT---------AACGGCC------C--------CAAATTGAGCGTGCGCTTTGACC--CAAATCTCCCCATCGACAAT---GACAGCAACAACAA---------------------C----------------------AGCAATGGAAAG---------------------------------------------------------------------------------A------------G------CATCAGCAGC--------------------------------A---GC--AGCG----------------GCA----------------------GCAGCGAGAGCCAGAATGCAAAAA---TCGGCCGAAAGGCGCGCTCTCTCAGCAATTCTCCGTT-------------------------------GTACCATCGCAAGAA
droPer2 scaffold_6:824408-824650 - GGC--------------------------------------------------------GGGCGTTCCACATGTTGCTG---------CAACCTCCAAAGTGCTGCAAGGCAGCAGTCTCAGCCCCAGCCCCC---ACCACC------ACCACC----A---------------------------------------------CCAT---------AACGGCC------C--------CAAATTGAGCGTGCGCTTTGACC--CAAATCTCCCCATCGACAAT---GACAGCAACAACAA---------------------C----------------------AGCAATGGAAAG---------------------------------------------------------------------------------A------------G------CATCAG---------------------------------------------------------------------------------------------CGAGAGCCAGAATGCAAAAA---TCGGCCGAAAGGCGCGCTCTCTCAGCAATTCTCCGTT-------------------------------GTACCATCGCAAGAA
droAna3 scaffold_12911:2281892-2282061 + GCA--TCCGCAC-------G---AGCA---T----------------------------------------------------------------------------------------------------------------------CGGGC----G---------------------------------AGAAAA--------------------------CAGCCCC--------CAAATTGGGAGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TGC---CGAGCG-------------------------------------------------------------------------AGAATGCAAA-----------------------------------------------TTCGAAAA---GCGGCCGCAAGGCGCGCTCTCTGAGCAACTCGCCGCT-------------------------------GTACGAGCGCAAGAA
droBip1 scf7180000396714:798631-798804 - ACA--TGC--ATCCA----C---GAAG---ACG-------------------------------------------------------------------------------------------------------------------GCGGGC----G---------------------------------AGAAAA--------------------------CAGCCCC--------AAAATTAGGAGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCC---CGAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TTCGAAAA---GCGGCCGCAAGGCGCGCTCTCTCAGCAACTCGCCGCT-------------------------------GTACGAGCGCAAGAA
droKik1 scf7180000302690:225569-225759 - CCG--ACAGCTA-------T---ATCT---GCAGCAACA-----------------------------------------------------------------------------------------------------------------------G---------------------------------CAACAA--------------------------AGCCATC--------CAAATTAAGCGTGCGCTTCGACC--CAAATTTACCCAAAGATAAT---GACAGCAACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TGAACAGCACTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------TGCGAATTCGAGTTCGAAAG---GCGGACGCAAGGCCCGATCGCTGAGTAACTCGCCGCT-------------------------------GTATGAGCGCAAGAA
droFic1 scf7180000453812:968186-968452 - ACA--TAC--GGCAGCG-GCAGCGGCGGCGGCAGCAGCA---GCAACAGCGG--------------------------------TT-GCCACAA-------------CGGTAA-------------------------------------------------------------------------------------CAACGGCAGTGGCAGCGGCAGCGGCA------G--------CGGCGTCGGCGTCGGCAACATTT--GCAATCAGCAGATCAACAAC---TACAGCAATAACAA---------------------C----------------------AACAACGGCAGCAGCAGCAGCAATCATATGAGTGCAGGCGGTTTCTTCGGCGG---------CAGCAGCAGCAGCAGTGGCAAC---------A------------G------CAATACCGACTACTTGGCCACG--------------------------------------------------------------------------------------------------------------------------------CCGACAACC-------------------------------GCTTATGCGACACCA
droEle1 scf7180000490996:1013959-1014232 + GCG--ACAGCAG-------C---AACT---GCAGCAGCAGTTGCAGCAGCAG--------------------------------CT-GCAACAG-------------CAATTG-------------------------------------------------------------------------------------CAACAGCAAC-------------------------------------------------------------------------------------------AG---CAACAGCAGCAGCAGCAACCATCGCCCATGTTGGGCAGACCAGCGGCAGCCACGCCC---------ACAGATATGCA-GCGTTATGTGCAGAGGATGCAACAACAACAGCAGCAACAGCAGCAACA---GCAGCA------------------A------CAGCAG--CAG-----------------------------------CA----------------GCA----------------------GCAACAGGAGCTGTACCGCC----------------------------------AGCAACAGCAGCAACATCGCACTAGTATGAGCGGCATAGCCAGC---CAGCAACAC
droRho1 scf7180000760202:71820-72072 + ACA--ACAGCAG-------C---AACA---ACAGCAGCA---GCA---------------------ACAAC--------AACAGCA-GCAGCAA-------------CAA------------------------------------------------------------------------------------------------------------------CAGCAGCA-----------------------------------------GCAAC---------------------AA---CAGCAGCAGCAACAACAAC----------------------AGCAGCAGCAACAACA---------------------------------GCAGCAGCAACAACAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAG--------CAA-----------------------------------CA----------------GCAACAACAACAACAGCAGCAACAG-CAAC------------------------AACAACAACAGCAGCTGCAACAACAACATCAGGTC-------------------------------TTGGCACAGCAACAA
droBia1 scf7180000302155:399668-399858 + CTCCACCA--T------G-T---GG---------------------------------------------------CCG---------C-----------------------------------------CCCACCTGCG--------CCCGCC----C---------------------------------CCAAAA--------------------------CACCACC--------CAAACTGAGCGTACACTTTGACC--CCAATCTGCCCAAAGATAGCAGCGACAGCAACAACAA---------------------C----------------------T---------------------------------------------------------------------------------TAA---GCAGTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCCAAGAGCGGCGGCCGCAAGGCGCGTTCGCTGAGCAATTCGCCGCT-------------------------------GTACCACCGCAAGAA
droTak1 scf7180000415417:340804-340986 - CCA--ACA--T------G-C---CG---------------------------------------------------CCG---------C-------------------------------------------------CACTGTCCCCGCCGCC----C---------------------------------CTAAAA--------------------------CACCACC--------CAAATTGAGCGTACACTTTGACC--CCAATTTGCCCAAAGACAAC---GACAGCAACAACAA---------------------T----------------------A---------------------------------------------------------------------------------TTA---GCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAAA---GCGGTCGCAAGGCGCGCTCGCTGAGCAATTCGCCGCT-------------------------------GTATCATCGCAAAAA
droEug1 scf7180000409542:105515-105690 - CCCCAATA--T------G-C---CACC---GCC-------------------------------------------------------------------------------------------------------------------GCCGCT----C---------------------------------CGAAAA--------------------------CGCCGCC--------GAAATTGAGCGTACACTTTGACC--CCAATTTGCCCAAAGACAAC---GATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TTA---GCAGTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCCAAAA---TCGGTCGCAAGGCGCGCTCGCTCAGCAATTCGCCGCT-------------------------------GTATCATCGCAAAAA
dm3 chr3R:17030900-17031093 + CCTCAATA--T------G-C---CAAC---CC-------------------------------------------------------------------------------------------------TCCCGCCGACACT------GCCGCC----C---------------------------------CGAAAA--------------------------CGCCACC--------CAAGCTGAGCGTACACTTTGACC--CCAATTTGCCGAAAGACAAC---GATAGCAACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTAAGCAATTCGCCACT-------------------------------GTATCACCGAAAAAA
droSim2 x:11775184-11775462 - ACA--TCCGCAG-------C---AGCA---GCGGCAAAC---GCA-----------------------ACA------------GCA-GCAGCTCCCCAACTACCGC-----------------------CCCC---------------GCTGCCCGTTACCGTGGCAACATTGCCCACTCAGGCGGCGACGG------CAGCAGCAGC---------AACAGCT------G--------CG------------ATTTTGGCC------ACTCACCAGCAACAGC---AGCAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAATTGCAGCAG------CATCAGC--------------------------------------ATTTGA--------GCA--GCAGCAACAACAACAACAACGGCGGCAGCAC-ACAC------------------------GGCCAAC---AGCATACGCACAGCAACA--ACAAC-------------------------------AACACATTGCCAGTA
droSec2 scaffold_0:13819818-13820029 - ACA--ACGGCAG-------C---GGCG---GCAGCATTT---GCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCAGATCAACAAC---TACGGCAACAACAACAACGTCGGC-------------------------------------------------------AATCATATGAGTGCAGGCAGTTTCTTCGGCGGGGCCAACAGCAACATCCACAGTAGTGGCAAT---------A------------G------CAATACCGATTATATGACCACGCCAACCACCGCTTATGCGACA---------------------------------CCAGCGACGGCAGCCACAT-CCAC------------------------GGTGAAC---A-----------------------------------------------------------------CCACA
droYak3 3R:5815705-5815896 + ACA--ATA--T------GGCAATCC--------------------------------------------------------------------------------------------------------CCCCGCCGACACT------GCCGCC----A---------------------------------CGAAAA--------------------------CGCCGCC--------CAAGTTGAGCGTACACTTTGACC--CCAATTTGCCAAAAGACAAC---GATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCGCCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAATGCGTCGGCCGTAAGGCGCGTTCGCTGAGCAATTCGCCACT-------------------------------GTATCACCGCAAAAA
droEre2 scaffold_4690:4615009-4615231 + ACA--ACGACAA-------C---GAAA---ACAACAACA---GCA---------------------AGCA-------------------------------------CAGCAG-------------------------------------------------------------------------------------CAGCAGCAAC---------AA-----CAACAACAAGTGTAGTGGGTCGCACGCGCGACTTGTGTGTGTGAATAATGAAGAAAAAGC---AGAAGCAACAACAA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------GCA---GCAGAG-------------------------------------------------------------------------GCAGAGCAAGGCGCCATCTG------------------------------------------AAG---CGGAATCGGAGGCAGACCGCCCCGGC-AGCAACAGCA-------------------------------GCAGCACCAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACA--ACGGCAG-------C---GACT---GCGGCAGGT------------------------GTGTCACA------------GCAGACAGCTTCCAAATTACCACACAACAA-------------------------------------------------------------------------------------AAACAACAGT---------AATAATG------G--------GAAATTAAGCGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAATAACAA---------------------C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--AGAGAGAAA------------AGGCGAGAACATT--GGCG----------------GCA----------------------GCTATGACAGCTTGCATGCGAAGG---TTGCGCGCAAGGCGCGCTCTCTCAGCAATTCGCCGCT-------------------------------ATA---CAGAAAGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................ATG------G--------GAAATTAAGCGTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCAGCAATTCGCCGCT-------------------------------...............2011.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------------------G--AGAGAGAAA------------AGG.......................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................ACAGT---------AATAATG------G--------GAAATTAAGCGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................ATG------G--------GAAATTAAGCGTGCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................GAAATTAAGCGTGCGCTTTGACC--CAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GACC--CAAATCTGCCC---GATAAT---GACA....................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AATG------G--------GAAATTAAGCGTGCGCTTTGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------AGGCGAGAACATT--GGCG----------------GCA----------------------G.............................................................................................................2311.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................CCACACAACAA-------------------------------------------------------------------------------------AAACAACAGT---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACATT--GGCG----------------GCA----------------------GCTATGAC......................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................GACT---GCGGCAGGT------------------------GTGTCACA------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACATT--GGCG----------------GCA----------------------GCT...........................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--AGAGAGAA.......................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AGT---------AATAATG------G--------GAAATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAATTCGCCGCT-------------------------------ATA---CAGAA....2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ATAATG------G--------GAAATTAAGCGTGCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................ATAATG------G--------GAAATTAAGCGTGCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AGAGAGAAA------------AGGCGAGAACATT--GGCG----------------.......................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AATAACAA---------------------C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--A..............................................................................................................................................................................................2420.501000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................AACAA---------------------C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--AG.............................................................................................................................................................................................2270.141000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................ACAA---------------------C----------------------A---------------------------------------------------------------------------------ACAGCAGCAGCA------------------------------G--...............................................................................................................................................................................................19200.102000000000000000000000000200000000000000000000000000000000000000
droMoj3
GCA--ACAGCGG-------C---AGCG---GCAGCGGCT---------------------GGCCTGCCACA------------GCAGACAGCTTCCAAATTACTACACAGCAA-------------------------------------------------------------------------------------CAACAGCAAT---------AACAATG------G--------GAAATTAAGCGTCCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCGACAAGAA---------------------C----------------------AACA------------------------------------------------------------------------------ACA---GTAGCA------------------A------AAGCAA--AGAGAGAAC------------CTATGAGAGCTTA--GGCG----------------GCA----------------------GCTATGACAGTTTGCACGCGAAGG---TTGCCCGCAAGGCGCGCTCTCTTAGCAATTCGCCGCT-------------------------------ATA---CCGAAAGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................GGCT---------------------GGCCTGCCACA------------GCAGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..........................................................................................GCTTCCAAATTACTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTTA--GGCG----------------GCA----------------------GCTATGAC......................................................................................................2311.001001000
..........................................................................................................................................................................................................AGCAAT---------AACAATG------G--------GAAATTAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGTTTGCACGCGAAGG---TT.................................................................................2311.001000001
.................................................................................................................................................................................................................................................................................CC---GATAAT---GACAGCGACAAGA...........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC------------CTATGAGAGCTTA--GGCG----------------GCA----------------------..............................................................................................................2411.001100000
droGri2
ACT--GCAAATG-------C---GAAT---CCGAATCCGAGTGCGAATGCGAATGCGTCAGGTGTGTCACA------------GCAGACAGCTTCCAAATTGCGACAAAGCAG-------------------------------------------------------------------------------------CAACAACAAT---------AATGGAA------A--------CAAATTAAGCGTGCGCTTTGACC--CAAATCTGCCCGATAATAATAATGACAGCAACAAC----------------------------------------------A---------------------------------------------------------------------------------ACAATAACAACA------------A------CAACAACAATTG--CGAGAGCA-----------------------------ACT----------------ACA----------------------ACTATGACAGTTTACATGCGAAGG---TTGCCCGCAAGGCGCGCTCTCTCAGTAATTCGCCGCT-------------------------------GTA---TCGCAAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGG---TTGCCCGCAAGGCGCGCT.................................................................2311.00101
.......................................................................................................................................................................................................................................................GCGTGCGCTTTGACC--CAAATCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
droWil2
GCA--GCAGCAG-------C---AGCA---GCAACAACA---ACA---------------------ACAAG------------GAATGCAACAACCAAATTGCCCATCAGCAA-------------------------------------------------------------------------------------CAACAAAAATAGTAACAACAACAGCA------A--------CAAATTAAGCGTACGCTTTGACC--CAAATTTACCCGCCGACAAT---GACAACAACAACAA---------------------C----------------------A---------------------------------------------------------------------------------AAAATAGCCACG-------------------------------------------------------------------------ACAATG-----------------------------------GCAACAACAACCAAAATGCAAAAT---CTTCACGCAAAGCTCGCTCTCTGAGCAATTCTCCGCA-------------------------------ATATCATCGAAAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---CTTCACGCAAAGCTCGCTCTCTG............................................................2511.00101000
...................................AACA---ACA---------------------ACAAG------------GAATGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAAT---CTTCACGCAAAGCTCGCTCT...............................................................2811.00101000
.......AGCAG-------C---AGCA---GCAACAACA---ACA---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
dp5
GGC--------------------------------------------------------GGGCGTTCCACATGTTGCTG---------CAACCTCCAAAGTGCTGCAAGGCAGCAGTCTCAGCCCCAGCCCCCACCACCACC------ACCACC----A---------------------------------------------CCAT---------AACGGCC------C--------CAAATTGAGCGTGCGCTTTGACC--CAAATCTCCCCATCGACAAT---GACAGCAACAACAA---------------------C----------------------AGCAATGGAAAG---------------------------------------------------------------------------------A------------G------CATCAGCAGC--------------------------------A---GC--AGCG----------------GCA----------------------GCAGCGAGAGCCAGAATGCAAAAA---TCGGCCGAAAGGCGCGCTCTCTCAGCAATTCTCCGTT-------------------------------GTACCATCGCAAGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................CAAATCTCCCCATCGACAAT---GACAGC..................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................TTGAGCGTGCGCTTTGACC--CAAATC.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................GAAAG---------------------------------------------------------------------------------A------------G------CATCAGCAGC--------------------------------A---GC--A..........................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTCCGTT-------------------------------GTACCATCGC.....2111.0010010000000
..............................................................................................................................................................................................................AT---------AACGGCC------C--------CAAATTGAGCGTGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................AAG---------------------------------------------------------------------------------A------------G------CATCAGCAGC--------------------------------A---GC--A..........................................................................................................................................................1940.2510100000000
droPer2
GGC--------------------------------------------------------GGGCGTTCCACATGTTGCTG---------CAACCTCCAAAGTGCTGCAAGGCAGCAGTCTCAGCCCCAGCCCCC---ACCACC------ACCACC----A---------------------------------------------CCAT---------AACGGCC------C--------CAAATTGAGCGTGCGCTTTGACC--CAAATCTCCCCATCGACAAT---GACAGCAACAACAA---------------------C----------------------AGCAATGGAAAG---------------------------------------------------------------------------------A------------G------CATCAG---------------------------------------------------------------------------------------------CGAGAGCCAGAATGCAAAAA---TCGGCCGAAAGGCGCGCTCTCTCAGCAATTCTCCGTT-------------------------------GTACCATCGCAAGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAG---------------------------------------------------------------------------------------------CGAGAGCCAGAATGC...........................................................................................2111.001001000
....................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------------------A------------G------CATCAG---------------------------------------------------------------------------------------------CGAGAGCCAGAATG............................................................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCAATTCTCCGTT-------------------------------GTACCAT........2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGGCGCGCTCTCTCAGCAAT......................................................2411.001001000
droAna3
GCA--TCCGCAC-------G---AGCA---T----------------------------------------------------------------------------------------------------------------------CGGGC----G---------------------------------AGAAAA--------------------------CAGCCCC--------CAAATTGGGAGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TGC---CGAGCG-------------------------------------------------------------------------AGAATGCAAA-----------------------------------------------TTCGAAAA---GCGGCCGCAAGGCGCGCTCTCTGAGCAACTCGCCGCT-------------------------------GTACGAGCGCAAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------TTCGAAAA---GCGGCCGCAAGGCG.....................................................................2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................GC---CGAGCG-------------------------------------------------------------------------AGAATGCAAA-----------------------------------------------TTCGAAAA---GC.................................................................................2811.001000001
.....................................................................................................................................................................................................................................................GGGAGTGCGCTTTGACC--C..............................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
ACA--TGC--ATCCA----C---GAAG---ACG-------------------------------------------------------------------------------------------------------------------GCGGGC----G---------------------------------AGAAAA--------------------------CAGCCCC--------AAAATTAGGAGTGCGCTTTGACC--CAAATCTGCCC---GATAAT---GACAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCC---CGAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TTCGAAAA---GCGGCCGCAAGGCGCGCTCTCTCAGCAACTCGCCGCT-------------------------------GTACGAGCGCAAGAASizeHit CountTotal NormTotal
No Reads
droKik1
CCG--ACAGCTA-------T---ATCT---GCAGCAACA-----------------------------------------------------------------------------------------------------------------------G---------------------------------CAACAA--------------------------AGCCATC--------CAAATTAAGCGTGCGCTTCGACC--CAAATTTACCCAAAGATAAT---GACAGCAACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TGAACAGCACTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------TGCGAATTCGAGTTCGAAAG---GCGGACGCAAGGCCCGATCGCTGAGTAACTCGCCGCT-------------------------------GTATGAGCGCAAGAASizeHit CountTotal NormTotal
No Reads
droFic1
ACA--TAC--GGCAGCG-GCAGCGGCGGCGGCAGCAGCA---GCAACAGCGG--------------------------------TT-GCCACAA-------------CGGTAA-------------------------------------------------------------------------------------CAACGGCAGTGGCAGCGGCAGCGGCA------G--------CGGCGTCGGCGTCGGCAACATTT--GCAATCAGCAGATCAACAAC---TACAGCAATAACAA---------------------C----------------------AACAACGGCAGCAGCAGCAGCAATCATATGAGTGCAGGCGGTTTCTTCGGCGG---------CAGCAGCAGCAGCAGTGGCAAC---------A------------G------CAATACCGACTACTTGGCCACG--------------------------------------------------------------------------------------------------------------------------------CCGACAACC-------------------------------GCTTATGCGACACCASizeHit CountTotal NormTotal
No Reads
droEle1
GCG--ACAGCAG-------C---AACT---GCAGCAGCAGTTGCAGCAGCAG--------------------------------CT-GCAACAG-------------CAATTG-------------------------------------------------------------------------------------CAACAGCAAC-------------------------------------------------------------------------------------------AG---CAACAGCAGCAGCAGCAACCATCGCCCATGTTGGGCAGACCAGCGGCAGCCACGCCC---------ACAGATATGCA-GCGTTATGTGCAGAGGATGCAACAACAACAGCAGCAACAGCAGCAACA---GCAGCA------------------A------CAGCAG--CAG-----------------------------------CA----------------GCA----------------------GCAACAGGAGCTGTACCGCC----------------------------------AGCAACAGCAGCAACATCGCACTAGTATGAGCGGCATAGCCAGC---CAGCAACACSizeHit CountTotal NormTotal
No Reads
droRho1
ACA--ACAGCAG-------C---AACA---ACAGCAGCA---GCA---------------------ACAAC--------AACAGCA-GCAGCAA-------------CAA------------------------------------------------------------------------------------------------------------------CAGCAGCA-----------------------------------------GCAAC---------------------AA---CAGCAGCAGCAACAACAAC----------------------AGCAGCAGCAACAACA---------------------------------GCAGCAGCAACAACAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAG--------CAA-----------------------------------CA----------------GCAACAACAACAACAGCAGCAACAG-CAAC------------------------AACAACAACAGCAGCTGCAACAACAACATCAGGTC-------------------------------TTGGCACAGCAACAASizeHit CountTotal NormTotal
No Reads
droBia1
CTCCACCA--T------G-T---GG---------------------------------------------------CCG---------C-----------------------------------------CCCACCTGCG--------CCCGCC----C---------------------------------CCAAAA--------------------------CACCACC--------CAAACTGAGCGTACACTTTGACC--CCAATCTGCCCAAAGATAGCAGCGACAGCAACAACAA---------------------C----------------------T---------------------------------------------------------------------------------TAA---GCAGTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCCAAGAGCGGCGGCCGCAAGGCGCGTTCGCTGAGCAATTCGCCGCT-------------------------------GTACCACCGCAAGAASizeHit CountTotal NormTotal
No Reads
droTak1
CCA--ACA--T------G-C---CG---------------------------------------------------CCG---------C-------------------------------------------------CACTGTCCCCGCCGCC----C---------------------------------CTAAAA--------------------------CACCACC--------CAAATTGAGCGTACACTTTGACC--CCAATTTGCCCAAAGACAAC---GACAGCAACAACAA---------------------T----------------------A---------------------------------------------------------------------------------TTA---GCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAAA---GCGGTCGCAAGGCGCGCTCGCTGAGCAATTCGCCGCT-------------------------------GTATCATCGCAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
CCCCAATA--T------G-C---CACC---GCC-------------------------------------------------------------------------------------------------------------------GCCGCT----C---------------------------------CGAAAA--------------------------CGCCGCC--------GAAATTGAGCGTACACTTTGACC--CCAATTTGCCCAAAGACAAC---GATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TTA---GCAGTG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCCAAAA---TCGGTCGCAAGGCGCGCTCGCTCAGCAATTCGCCGCT-------------------------------GTATCATCGCAAAAASizeHit CountTotal NormTotal
No Reads
dm3
CCTCAATA--T------G-C---CAAC---CC-------------------------------------------------------------------------------------------------TCCCGCCGACACT------GCCGCC----C---------------------------------CGAAAA--------------------------CGCCACC--------CAAGCTGAGCGTACACTTTGACC--CCAATTTGCCGAAAGACAAC---GATAGCAACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTAAGCAATTCGCCACT-------------------------------GTATCACCGAAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------------------------------------------TGCTAAAGGCGGCGGTCGC...........................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CGAAAGACAAC---GATAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CAACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------A......................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTTGCCGAAAGACAAC---GATAGC..................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GCCGAAAGACAAC---GATAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................C--------CAAGCTGAGCGTACACTTTGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TG............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACC--------CAAGCTGAGCGTACACTTTGACC--...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAG..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGCCGAAAGACAAC---GATAGC..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGTCGCAAGGCGCGTTCACTAAGC.........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................A---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------AAAA...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CCGCCGACACT------GCCGCC----C---------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CCACC--------CAAGCTGAGCGTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACAACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------A......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAGCAATTCGCCACT-------------------------------...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ACAA---------------------C----------------------C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------AAAATGCA...............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGC...........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGCCACT-------------------------------GTATCACCGAATC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAGCTGAGCGTACACTTTGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AATTTGCCGAAAGACAAC---GATAGC..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTTGACC--CCAATTTGCCGAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCGCCACT-------------------------------GTATCACCGA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CACC--------CAAGCTGAGCGTACACTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------TCACCGGCAGCG-------------------------------------------------------------------------AAAATGC................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCCACC--------CAAGCTGAGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CTGAGCGTACACTTTGACC--...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TACACTTTGACC--CCAATTTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGGTCGCAAGGCGCGTT.................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGGTCGCAAGGCGCG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AATTTGCCGAAAGACAAC---........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CC--CCAATTTGCCGAAAGACAAC---GA......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGCGGTCGCAAGGCGC....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGCAGCG-------------------------------------------------------------------------AAAATGCA...............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AATTTGCCGAAAGACAA............................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AAAGACAAC---GATAGCAACGCG............................................................................................................................................................................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000
droSim2
ACA--TCCGCAG-------C---AGCA---GCGGCAAAC---GCA-----------------------ACA------------GCA-GCAGCTCCCCAACTACCGC-----------------------CCCC---------------GCTGCCCGTTACCGTGGCAACATTGCCCACTCAGGCGGCGACGG------CAGCAGCAGC---------AACAGCT------G--------CG------------ATTTTGGCC------ACTCACCAGCAACAGC---AGCAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAATTGCAGCAG------CATCAGC--------------------------------------ATTTGA--------GCA--GCAGCAACAACAACAACAACGGCGGCAGCAC-ACAC------------------------GGCCAAC---AGCATACGCACAGCAACA--ACAAC-------------------------------AACACATTGCCAGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGA--------GCA--GCAGCAACAAC..................................................................................................................................1921.50300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACGGC......................................................................................................................19200.20400400000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACGG.......................................................................................................................18200.05100000010000000000
droSec2
ACA--ACGGCAG-------C---GGCG---GCAGCATTT---GCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCAGATCAACAAC---TACGGCAACAACAACAACGTCGGC-------------------------------------------------------AATCATATGAGTGCAGGCAGTTTCTTCGGCGGGGCCAACAGCAACATCCACAGTAGTGGCAAT---------A------------G------CAATACCGATTATATGACCACGCCAACCACCGCTTATGCGACA---------------------------------CCAGCGACGGCAGCCACAT-CCAC------------------------GGTGAAC---A-----------------------------------------------------------------CCACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....ACGGCAG-------C---GGCG---GCAGCATTT---GCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTAGTGGCAAT---------A------------G------CA...........................................................................................................................................................................................................1911.0010001
droYak3
ACA--ATA--T------GGCAATCC--------------------------------------------------------------------------------------------------------CCCCGCCGACACT------GCCGCC----A---------------------------------CGAAAA--------------------------CGCCGCC--------CAAGTTGAGCGTACACTTTGACC--CCAATTTGCCAAAAGACAAC---GATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCGCCGGCAGCG-------------------------------------------------------------------------AAAATGCAAA-----------------------------------------------TGCTAAATGCGTCGGCCGTAAGGCGCGTTCGCTGAGCAATTCGCCACT-------------------------------GTATCACCGCAAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTGAGCAATTCGCCACT-------------------------------GT.............2311.00100100000000
.......................................................................................................................................................GCC----A---------------------------------CGAAAA--------------------------CGCCGCC--------CAAGTTGAGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTCGGCCGTAAGGCGC....................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................ACTTTGACC--CCAATTTGCCAAA..................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCGTCGGCCGTAAGGCGCGTTCGCT.............................................................2911.00100000010000
................................................................................................................................................................................................................................................................................................ATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCGCCGGCAGC.................................................................................................................................................................................................................................2611.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCGTCGGCCGTAAGGCGC....................................................................2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTGAGCAATTCGCCACT-------------------------------...............2211.00101000000000
..................................................................................................................................................................................................................................................................................AAAAGACAAC---GATAGCAACAAC............................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................GATAGCAACAACAA---------------------T----------------------C---------------------------------------------------------------------------------TCGCCGGC....................................................................................................................................................................................................................................2411.00110000000000
......................................................................................................................................................................................................................................................................................GACAAC---GATAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.....................................................................................................................................................................................................................................................GAGCGTACACTTTGACC--CCAATTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEre2
ACA--ACGACAA-------C---GAAA---ACAACAACA---GCA---------------------AGCA-------------------------------------CAGCAG-------------------------------------------------------------------------------------CAGCAGCAAC---------AA-----CAACAACAAGTGTAGTGGGTCGCACGCGCGACTTGTGTGTGTGAATAATGAAGAAAAAGC---AGAAGCAACAACAA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------GCA---GCAGAG-------------------------------------------------------------------------GCAGAGCAAGGCGCCATCTG------------------------------------------AAG---CGGAATCGGAGGCAGACCGCCCCGGC-AGCAACAGCA-------------------------------GCAGCACCAACAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................AA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------............................................................................................................................................................................................................................................19200.1530000030
...................................................................................................................................................................................................................................................................................................GCAACAACAA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------............................................................................................................................................................................................................................................27100.1010001000
.....................................................................................................................................................................................................................................................................................................AACAACAA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------............................................................................................................................................................................................................................................25200.1021000010
..........................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCA------------------------------------------------------------------GCA---GC....................................................................................................................................................................................................................................20200.1020000020
........................................................................................................................................................................................................................................................................................................AACAA---------------------C----------------------AGCAGCAGCAGCAGCA------------------------------------------------------------------G...........................................................................................................................................................................................................................................23200.0510100000
....................................................................................................................................................................................................................................................................................................CAACAACAA---------------------C----------------------AGCAGCAGCAG...................................................................................................................................................................................................................................................................................................................21200.0510000010
...................................................................................................................................................................................................................................................................................................GCAACAACAA---------------------C----------------------AGCAGCAGC.....................................................................................................................................................................................................................................................................................................................20200.0510100000
.....................................................................................................................................................................................................................................................................................................AACAACAA---------------------C----------------------AGCAGCAGCA....................................................................................................................................................................................................................................................................................................................19200.0510001000
....................................................................................................................................................................................................................................................................................................CAACAACAA---------------------C----------------------AGCAGCAGCA....................................................................................................................................................................................................................................................................................................................20200.0510000100

Generated: 05/19/2015 at 07:16 PM