ID:

dvi_15406

 Coordinate:

scaffold_13047:3476402-3476552 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.2 -17.1

Flybase annnotation

exon [dvir_GLEANR_9132:4]; CDS [Dvir\GJ23804-cds]; intron [Dvir\GJ23804-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTTGCCGAATTGGTGAGTGATTGTTATGATTTAGTGTCTATTTATTTCTGTAGTGATTTGTGCTTGCATAATTGAAATTTGTTTTAAGATTTCACGCCTTTGTTTTCGATTTTTTTTTTGTGCCTGTGTGTGTGTGTGTGCGTGCGTGTGCGCTTTTGTGACGTCACATAGCCATCGATTGATTGAAGACATGTGTTAAACATTTAATTTTTT
************************************************************************************.....((((((.(((((.((((((..((((((((......))))))))(((.........(((........))).........)))..)))))).))))).)).))))......***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060689
160x9_testes_total
 V047
embryo
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 V053
head
 SRR060657
140_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
.......................................................................................GTATTGATTGGTGCTTGCATC............................................................................................................................................... 21 3 2 5.50 11 3 5 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................GTATTGATTGGTGCTTGCAT................................................................................................................................................ 20 2 2 2.00 4 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTGATTGAAGACATGTGT................. 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TCTGTAGTGATTTGTGCTTGC.................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTATTGATTGGTGCTTGCA................................................................................................................................................. 19 2 3 1.33 4 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................ATCGATTGATTGAAGACATGT................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATTGAAGACATGTGTTGAACA........... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TCTGTAGTGATTTGTGCTCTCA................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGTGACGTCACATAGCCATC..................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATTGAAGACATGTGTTGA.............. 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCCATCTATTGATTGAAGAC....................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGTGTGCGCTTTTGTGACGTC................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGCGTGCGTGTGCGCTTTTGTG..................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCTTTGCCGAATTGGTGAGTG.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGAGCAGACCTTTGCCGAATTGGAAC..................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AATGAACATGAGCAGACCTT................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTGTGACGTCACATAGCCAT...................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGCGCTTTTGTGACGTCACA............................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTAGTGATTTGTGCTTGC.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ATTGATTGGTGCTTGCATCAT............................................................................................................................................. 21 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAATGAACATGAGCGGACCT.................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTTTTTTTGTGCCTGTGTGT.................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CAGACCTTTGCCGAATTGGAA...................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGTGAACATGAGCAGACCTTTGC................................................................................................................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGAAGACATGTGTTAAACATT......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTGTGCGTGCGTGTGCGCTTT......................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTATTGATTGGTGCTTGCATCAT............................................................................................................................................. 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AATGAACATGAGCAGACCTTTGCC............................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GGTATTGATTGGTGCTTGCAT................................................................................................................................................ 21 3 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TATTGATTGGTGCTTGCAT................................................................................................................................................ 19 2 5 0.60 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................ATTGATTGGTGCTTGCAT................................................................................................................................................ 18 2 20 0.55 11 2 4 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1
....................................................................................................................................................TTTATTTTTGTGCCTGTGTGT.................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTATTTTTGTGCCTGTGTGTG................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TGATTGGTGCTTGCATCAT............................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CAGACCTTTGCCGAATTGGCA...................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GGTATTGATTGGTGCTTGCA................................................................................................................................................. 20 3 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GATTGGTGCTTGCATCAT............................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTAATGATTGGTGCTTGCA................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TATTGATTGGTGCTTGCATC............................................................................................................................................... 20 3 12 0.25 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGAGATGGTGATGATTTAGT.................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................GTGCTTGCATAATGGAAG........................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................TGAGTGATAGTTATGATTAG.................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................CTGTGTGTGTGTGTGTGC........................................................................ 18 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................TGTGTGTGTGCGTGCGTGTGC.............................................................. 21 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGTGTAGGTGCGTGTGCGCT........................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTGTGTGTGTGTGTGTGCGTG..................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCGCGTAACTGACCGACCCGTTACTTGTACTCGTCTGGAAACGGCTTAACCACTCACTAACAATACTAAATCACAGATAAATAAAGACATCACTAAACACGAACGTATTAACTTTAAACAAAATTCTAAAGTGCGGAAACAAAAGCTAAAAAAAAAACACGGACACACACACACACACGCACGCACACGCGAAAACACTGCAGTGTATCGGTAGCTAACTAACTTCTGTACACAATTTGTAAATTAAAAAA
*****************************************************.....((((((.(((((.((((((..((((((((......))))))))(((.........(((........))).........)))..)))))).))))).)).))))......************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060656
9x160_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
.......................................AACGGCTTAACCACTCACTAA............................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACTGCAGTGTATCGGTAGCTA.................................. 21 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
........CTGGCCGACCCGTTACTTGTA.............................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACACGCGAAAACACTGCAGT............................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTATCGGTAGCTAACTAACTT.......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................CGTCTGGAAACGGCTTGGCCA....................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAGCTAACTAGCTTCTGTACA................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGTAGCTAACTAACTTCTGTACA................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGCGAAAACACTGCAGTGTGT........................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACTAACTTCTGTACACAACTT............. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CACTAACAATACTAAATCACA................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAAAAAAACACGGGCACAT................................................................................... 20 2 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0
......................................................................................................................................................AAAAAAACAGGGACACAC................................................................................... 18 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAAGCTAAAGGAAGAACACGG......................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................GTAGACACTTTGTAAATTA..... 19 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAACTACTGTATACAATATGT........... 21 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAAAAAAACACGGGCACAT................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................AGTGCGGAACAAAAAGCTG....................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................AAAAAAACACGGGCACAT................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................ATCGGGAGGTAACTAAGTT.......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:3476352-3476602 + dvi_15406 GGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTTGCCGAATTGGTGAGTGATTGTTATG-----AT---T--TAGTG-----------------T-CT--A--TTTATTTCTGTA-----------GTGATTTGT---------------------------GCTTGCATAATTGAAATTTGTTTTAAGATTTCACGCCTTTGTTT------TCGATTTTTTTTTTGTGCCT----G------TGTG----TG-----TGTGT-G--T--------------------------------------------GCGTGCGTGT--GCGCTTTTGTGACGTCACATA--G-C---CATCG-ATTGA----------TTGAAGACAT------------------GTGTTAAACATTTAA-------------T------TTT-TT
droMoj3 scaffold_6540:20487573-20487828 + GACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATTTGCTGAATTGGTGAGTTATTGTTGTG-----ATTTAT--TTGTG-----------------T-TTAATT------GTCAAATTT--------TGTTATATGT---------------------------GCTTGCATAATTGAAATTAGTGTTCAGACTTTACGTCTTCGCTTTTTTGTTCGAC--------------TATTGGCGTTTGTGTG----TG-----TT-----------------------------------------------------TGTG--CGTATGCGC-TTTGTGACGTCACATG--G-C---CATCG-ATTGA------TTGAATAGACACTT------------------GTGTTATACT-------------ATTAATT-T---TTT-TT
droGri2 scaffold_14906:134964-135209 + GGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTTTGCAGAATTGGTGAGTTATTATTATG-----ATCTAT--TATGTGCAATGATTATTTGATAT-GTTAAGT----TGT------------------GATTTCT---------------------------GCTTGCATAATTGACATTT---------------------------------------------------------------GTG----TG-----TGTGCAGATTGTGCTCGCGTTTGCT-------T----T-----------GT---GCGTGCGTGT--GCGCTTTTGTGACGTCACATG--G-C---CATCG-ATTGA------TTGAATAGACACTT--------------GT--ATGTTGTACA-------------ATTAAT------TTGTTT
droWil2 scf2_1100000004943:7153401-7153628 - dwi_3330 GACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTTATT-TTTTACA-AAATA----------------------------------------TTTC---------------------------TTAT--GAATTT---GCATTTGTGGCTTGCATAAG----------------------------------------------------------------------TGATGATACG-----TTTGC-CTTTGT------CTTTTCGTGAGTCGCTCTCTTTCTGTGTGCGCGCGTGTGTG--TGT--ATGTGTTTGTGACGTCACTTG--T-AGGTCATCG-ATTGA------T-----------------------------------TGTCAATCATAA------------GA-CA---AT-AT
dp5 2:18667279-18667529 - dps_651 GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTT-T---AA---------T--TGGTT-----------------T-CT--AGTTTCATTTCCTTGCA--------TTT----------TCTTTGT--GTGT-GGTG--CGTGTCTTGCATAAG----------------------------------------------------------------------TGGGAAAACTT-CTTTCGCT-TGTCGC------GCTTCCT-------C----T-----------CTCT-TTGTG--CGT--GCCTTTTTGTGACGTCACGCG--C-A---AATCG-ATTGATTTAGCGGCGACACCGTAGA---------AGTGCACGC-----GTGTGTGTAA--------ATTAAT------TTG-TG
droPer2 scaffold_3:1397457-1397706 - GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTT-T---AA---------T--TGGTT-----------------T-CT--AGTTTCATTTCCTTGCA--------TTT----------TCTTTGT--GTGT-GGTG--CGTGTCTTGCATAAG----------------------------------------------------------------------TGGGAAAACTT-CTTTCGCT-TGTCGC------GCTTCCT-------C----T-----------CTCT-TTGTG--CGT--GCCTTTTTGTGACGTCACGCG--C-A---AATCG-ATTGATTTAGCGGCGACACCGTAGA---------A-TGCACGC-----GTGTGTGTAA--------ATTAAT------TTG-TG
droAna3 scaffold_13088:184650-184913 + GACGCATCGACTGGCAGGGGAATGAGCATGAGCAGACCTTTTCTGAATTGGTGAGTGATA-T---AAA-TAATAATTTCTATC-------------------------------AATTGTTTTTTGTTTTAATAA----------TTTG--GCATAGCGGGAG--GGAGTCTTGCATAAG----------------------------------------------------------------------TGTT----T---------TC-TTTTTT------ATTTTTTTTTTTTGATATTTTTTC------------GTGTG--CGT--GCGCCTTTGTGACGTCACGTC-GGAA---CATCG-ATTGA-------TGAATAGAGAAAATGGCAGGGAAACGCAGGC--GTGGGAAA-------------ATGAATT-TAT-TTT-TT
droBip1 scf7180000396413:238905-239152 + GACGCATCGACTGGCAGGGAAATGAGCATGAACAGACCTTCTCCGAATTGGTGAGTGAT----ATAGT-TAATTATTTGTAGCA-----------------TTTTAATTT----TAT--TTTAA--------TAA----------TTTT--TCAAA----GCG--GGGGTCTTGCATAAG----------------------------------------------------------------------TCTT----TT-----TT--T-TGTTG---------------------ATATTTTTTC------------GTGTG--CGT--GCGCCTTTGTGACGTCACTAC-GAAG---CATCG-ATTGA-------CGAATAGAGAAAATAGCAGGGAAACGCACGC--GTGGGAAA-------------ATAAATT-TATTTTT-TT
droKik1 scf7180000302387:35570-35810 + GTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTATTG-CCA--AT-TGCCTAAT--TAACA-----------------A-CTAATG------GCCGCATAA--------CGCCATTTGAATTTGTT--TGATCG---TCGTCCGA-CATTGCGTAAG----------------------------------------------------------------------TGTG----TG-----CGCGT------T------TCTTTTC-------C----T-----------CTTTGTCGTG--CGT--GTGCC--TGTGACGTCATG---------------G-GCTA------GGGGATAGAGAAAA---------A--------ACATAGCGCATGCCAATTTCTTTTTAAAC------TTT-TT
droFic1 scf7180000453912:1320403-1320645 + GTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTTTGAGGAATTGGTAAGTCTTT-TTGCAAT-TAGTCAAT--TAACT-----------------AGTTAAAGT----TATCGTTTGA--------TGC----------CTTT--TGATCG---GCA--CAAGTCTTGCATAAGTGTAATGT---------------------------------------------------------------GTT----TG-----TGTGCTGCTTGG------TTCTTCC-------G----T-----------CTCGTTCGTG--TTT--GCGCCTTTGTGACGTCACC---------------GGGTCA------GGGGATAGAGAAAA------------------AAGTTGCTCGTCAAAA------------AT-TAGTTAT-TT
droEle1 scf7180000491008:457944-458182 + GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTT-CTATAATTTGATTAAT--TAGCG-----------------T-TTAAAGT----TATCGTTTAA--------TTC----------CTTTTCTGATCG---GCG--TAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-T--TGC------ATTTTCT-------G----T-----------CTCTTTCGTG--CGT--GCGCCTCTGTGACGTCATCCAC------------GACTGA------GGGGATAGAGAAAA---------A--------AAGTTGAACATCAAAA------------AT-TAGTAAC-TT
droRho1 scf7180000779477:248827-249055 + GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTT-CTATAATTTGATTAAT--TAACG-----------------TTTTAAAGG----TATCGTTTAA--------TCC----------CCTTTCTGATCG---GGG--TAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-T--AGC------ATTTTCC-------G----T-----------CTCTTTCGTG--CGT--GCGCCCC--TGACGTCATT---------------G-----------GGGGATAGAGAAAA---------A--------AAGTTGACCATAAAAA-------------T-TAGTTAC-TA
droBia1 scf7180000302136:507105-507338 + GTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGGC-----------------TTTTAAAGT----TATCGTCAAA--------TGC----------CTTT--TGATCG---GCC-TTAAGTGTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGCCTCTCGC------ACTCGCC-------C----TCT---------CTCTTTCCTG--CAT--GCGCCTTTGTGACGTCATC---------------G----C------GGGGATAGAGAAAA------------------AAGTTGCCTGTAAAAA-------------T-TAGTTTT-TT
droTak1 scf7180000415769:2286225-2286463 - GTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGGC----------------GT-TTTAAGT----TATCGTTTAA--------ATC------G--CCTTT--TGATCG---GCGCATAAGTGTTGCGTAAG----------------------------------------------------------------------TGTG----TGTGTG-TCTGCTTCTCGC------ATCT-CC-------C----T-----------CTCTTTCCTT--CAT--GCGCCTTTGTGACGTCATC---------------G----A------GGGGATAGAGAAAA------------------ATGTTGACCGTAAAAA------------AT-TAGTGTT-TT
droEug1 scf7180000409798:234933-235167 - GTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTTTGAGGAATTGGTGAGTGCTT-TCATAAT-TAATCAAT--TAGTT-----------------T-TTAAACG----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCGTACAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TATAGC------ATTTTCC-------T----T-----------CTCTTTCTTG--CGT--GCGCCTTTGTGACGTCATC---------------GACTGA-----CGGGAATAGAGAAAA------------------AAGTTGACAATAAAAA-------------A-TAG-TTT-TT
dm3 chr3R:20145749-20145984 + GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCAGTCGTT--CGC--TCGCCTTTGTGACGTCATC---------------GTGTCA------GGGAATAGAGAAA-------------------AAGTTGCACATCAAAA------------TTCAAG-TTG-TT
droSim2 3r:19678114-19678346 + dsi_18593 GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAGTTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCTGTCGTT--CGC--GCGCCTTTGTGACGTCATC---------------GTGTGA------GGGAATAGAGAAAA------------------AAGTTGCCCATCCAA-------------TT-AAG---T-TG
droSec2 scaffold_0:20484293-20484525 + GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCTGTCGTT--CGC--GCGCCTTTGTGACGTCATC---------------GTGTGA------GGGAATAGAGAAAA------------------AAGTTGCCCATCCAA-------------TT-AAG---T-TG
droYak3 3R:26359705-26359938 - GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------A----T-----------CTCTGTCGTG--CGG--GCCCCTTTGTGACGTCATC---------------GGGTGA------GGGGATAGAGACAA------------------AAGTTGCACATCAAAA------------TT-GAG---T-TG
droEre2 scaffold_4820:7914753-7914986 - GTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAAGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTACACAGT----TATCGTTTAA--------TTA----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATATTCC-------A----T-----------CTCTGTCGTG--CGT--GCGCCTTTGTGACGTCATT---------------GGGTGA------GGGGATAGAGACAA------------------AAGTTGCATATCAAAA------------TT-AAG---T-TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTTGCCGAATTGGTGAGTGATTGTTATG-----AT---T--TAGTG-----------------T-CT--A--TTTATTTCTGTA-----------GTGATTTGT---------------------------GCTTGCATAATTGAAATTTGTTTTAAGATTTCACGCCTTTGTTT------TCGATTTTTTTTTTGTGCCT----G------TGTG----TG-----TGTGT-G--T--------------------------------------------GCGTGCGTGT--GCGCTTTTGTGACGTCACATA--G-C---CATCG-ATTGA----------TTGAAGACAT------------------GTGTTAAACATTTAA-------------T------TTT-TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................CG-ATTGA----------TTGAAGACAT------------------GTGT.....................................2112.002000000000000000000000000000011000000000000000000000000000000000
....................................................................................................................TCTGTA-----------GTGATTTGT---------------------------GCTTGC...................................................................................................................................................................................................................................................................................2112.002000000100000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ATCG-ATTGA----------TTGAAGACAT------------------GT.......................................2111.001000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTGACGTCACATA--G-C---CATC......................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CGTGT--GCGCTTTTGTGACGTC.......................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................T--------------------------------------------GCGTGCGTGT--GCGCTTTTGTG............................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
....................................CCTTTGCCGAATTGGTGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
............................TGAGCAGACCTTTGCCGAATTGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
....................AATGAACATGAGCAGACCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCACATA--G-C---CAT.......................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TGT--GCGCTTTTGTGACGTCACA....................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................TGTA-----------GTGATTTGT---------------------------GCTTGC...................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................TTTTTTTTGTGCCT----G------TGTG----T...............................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
................................CAGACCTTTGCCGAATTGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................................................................................................................................................TGAAGACAT------------------GTGTTAAACATT.............................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................GT-G--T--------------------------------------------GCGTGCGTGT--GCGCTTT................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................AATGAACATGAGCAGACCTTTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
................................CAGACCTTTGCCGAATTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................CT----G------TGTG----TG-----TGTGT-G--T--------------------------------------------GC.................................................................................................................................18200.102000000010000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TG-----TGTGT-G--T--------------------------------------------GCGTGCGTGT--GC.....................................................................................................................21180.061000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CT----G------TGTG----TG-----TGTGT-G--T--------------------------------------------GCGTG..............................................................................................................................21200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
GACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATTTGCTGAATTGGTGAGTTATTGTTGTG-----ATTTAT--TTGTG-----------------T-TTAATT------GTCAAATTT--------TGTTATATGT---------------------------GCTTGCATAATTGAAATTAGTGTTCAGACTTTACGTCTTCGCTTTTTTGTTCGAC--------------TATTGGCGTTTGTGTG----TG-----TT-----------------------------------------------------TGTG--CGTATGCGC-TTTGTGACGTCACATG--G-C---CATCG-ATTGA------TTGAATAGACACTT------------------GTGTTATACT-------------ATTAATT-T---TTT-TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................ATTGA------TTGAATAGACACTT------------------GT.......................................2111.001100000
droGri2
GGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTTTGCAGAATTGGTGAGTTATTATTATG-----ATCTAT--TATGTGCAATGATTATTTGATAT-GTTAAGT----TGT------------------GATTTCT---------------------------GCTTGCATAATTGACATTT---------------------------------------------------------------GTG----TG-----TGTGCAGATTGTGCTCGCGTTTGCT-------T----T-----------GT---GCGTGCGTGT--GCGCTTTTGTGACGTCACATG--G-C---CATCG-ATTGA------TTGAATAGACACTT--------------GT--ATGTTGTACA-------------ATTAAT------TTGTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................TTT---------------------------------------------------------------GTG----TG-----TGTGCAGATTG..............................................................................................................................................................................1911.00110
................................................................................................................................................................................TAATTGACATTT---------------------------------------------------------------GTG----TG-----TGTG.....................................................................................................................................................................................2111.00110
droWil2
GACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTTATT-TTTTACA-AAATA----------------------------------------TTTC---------------------------TTAT--GAATTT---GCATTTGTGGCTTGCATAAG----------------------------------------------------------------------TGATGATACG-----TTTGC-CTTTGT------CTTTTCGTGAGTCGCTCTCTTTCTGTGTGCGCGCGTGTGTG--TGT--ATGTGTTTGTGACGTCACTTG--T-AGGTCATCG-ATTGA------T-----------------------------------TGTCAATCATAA------------GA-CA---AT-ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........GACTGGCTGGGAAATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
..............................................................................................................................................................................................................................................................................................................................................TGTTTGTGACGTCACTTG--T-AG............................................................................................2112.00202000
....................AATGAGCATGAACAGACCTTTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..................................................................................................................................................................................................................................................................................................................................................TGTGACGTCACTTG--T-AGGTCA........................................................................................2111.00100001
...............................................................................................................................................................................................................................................................................................................................................GTTTGTGACGTCACTTG--T-AGGTCATC......................................................................................2611.00110000
........................................................................................................................................................................................................................................................................................................................................T--ATGTGTTTGTGACGTCA......................................................................................................1811.00101000
...............................................................................................................................................................................ATAAG----------------------------------------------------------------------TGATGATACG-----TTTGC-C..................................................................................................................................................................................2111.00110000
......................TGAGCATGAACAGACCTTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................TCACTTG--T-AGGTCATCG-ATTG................................................................................2111.00100100
dp5
GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTT-T---AA---------T--TGGTT-----------------T-CT--AGTTTCATTTCCTTGCA--------TTT----------TCTTTGT--GTGT-GGTG--CGTGTCTTGCATAAG----------------------------------------------------------------------TGGGAAAACTT-CTTTCGCT-TGTCGC------GCTTCCT-------C----T-----------CTCT-TTGTG--CGT--GCCTTTTTGTGACGTCACGCG--C-A---AATCG-ATTGATTTAGCGGCGACACCGTAGA---------AGTGCACGC-----GTGTGTGTAA--------ATTAAT------TTG-TGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................CGCT-TGTCGC------GCTTCCT-------C----T-----------CT......................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................AACTT-CTTTCGCT-TGTCGC------GT.....................................................................................................................................................................2111.0010100000000
...................AAATGAGCATCAGCAGACCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................TGT-GGTG--CGTGTCTTGCATA................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCACGCG--C-A---AAT.......................................................................................2111.0010100000000
......................................TTTGCCGAATTGGTGAGTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................GGCGACACCGTAGA---------AGTGCAC...........................................2111.0010100000000
......................TGAGCATCAGCAGACCTTTGCCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................TGATTTAGCGGCGACACCGTA.............................................................2111.0010100000000
...................................................................................................................TTCCTTGCA--------TTT----------TCTTTGT--GT......................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................GTT-----------------T-CT--AGTTTCATTTCCTTG........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................TGT--GTGT-GGTG--CGTGTCTTGC...................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTT-T---AA---------T--TGGTT-----------------T-CT--AGTTTCATTTCCTTGCA--------TTT----------TCTTTGT--GTGT-GGTG--CGTGTCTTGCATAAG----------------------------------------------------------------------TGGGAAAACTT-CTTTCGCT-TGTCGC------GCTTCCT-------C----T-----------CTCT-TTGTG--CGT--GCCTTTTTGTGACGTCACGCG--C-A---AATCG-ATTGATTTAGCGGCGACACCGTAGA---------A-TGCACGC-----GTGTGTGTAA--------ATTAAT------TTG-TGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TTGACTGGCTGGGAAATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.....................................................................................................................................................................CGTGTCTTGCATAAG----------------------------------------------------------------------TGGGA...................................................................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................T-------C----T-----------CTCT-TTGTG--CGT--GCCTTT.................................................................................................................2111.001000010
...................................................................................................................................................................................................................................................................TT-CTTTCGCT-TGTCGC------GCTTCC.................................................................................................................................................................2211.001010000
GACGCATTGACTGGCTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.ACGCATTGACTGGCTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........GACTGGCTGGGAAATGAGCATCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droAna3
GACGCATCGACTGGCAGGGGAATGAGCATGAGCAGACCTTTTCTGAATTGGTGAGTGATA-T---AAA-TAATAATTTCTATC-------------------------------AATTGTTTTTTGTTTTAATAA----------TTTG--GCATAGCGGGAG--GGAGTCTTGCATAAG----------------------------------------------------------------------TGTT----T---------TC-TTTTTT------ATTTTTTTTTTTTGATATTTTTTC------------GTGTG--CGT--GCGCCTTTGTGACGTCACGTC-GGAA---CATCG-ATTGA-------TGAATAGAGAAAATGGCAGGGAAACGCAGGC--GTGGGAAA-------------ATGAATT-TAT-TTT-TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................GAATAGAGAAAATGGCAGGGAAAC...............................................2411.001000010
droBip1
GACGCATCGACTGGCAGGGAAATGAGCATGAACAGACCTTCTCCGAATTGGTGAGTGAT----ATAGT-TAATTATTTGTAGCA-----------------TTTTAATTT----TAT--TTTAA--------TAA----------TTTT--TCAAA----GCG--GGGGTCTTGCATAAG----------------------------------------------------------------------TCTT----TT-----TT--T-TGTTG---------------------ATATTTTTTC------------GTGTG--CGT--GCGCCTTTGTGACGTCACTAC-GAAG---CATCG-ATTGA-------CGAATAGAGAAAATAGCAGGGAAACGCACGC--GTGGGAAA-------------ATAAATT-TATTTTT-TTSizeHit CountTotal NormTotal
No Reads
droKik1
GTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTATTG-CCA--AT-TGCCTAAT--TAACA-----------------A-CTAATG------GCCGCATAA--------CGCCATTTGAATTTGTT--TGATCG---TCGTCCGA-CATTGCGTAAG----------------------------------------------------------------------TGTG----TG-----CGCGT------T------TCTTTTC-------C----T-----------CTTTGTCGTG--CGT--GTGCC--TGTGACGTCATG---------------G-GCTA------GGGGATAGAGAAAA---------A--------ACATAGCGCATGCCAATTTCTTTTTAAAC------TTT-TTSizeHit CountTotal NormTotal
No Reads
droFic1
GTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTTTGAGGAATTGGTAAGTCTTT-TTGCAAT-TAGTCAAT--TAACT-----------------AGTTAAAGT----TATCGTTTGA--------TGC----------CTTT--TGATCG---GCA--CAAGTCTTGCATAAGTGTAATGT---------------------------------------------------------------GTT----TG-----TGTGCTGCTTGG------TTCTTCC-------G----T-----------CTCGTTCGTG--TTT--GCGCCTTTGTGACGTCACC---------------GGGTCA------GGGGATAGAGAAAA------------------AAGTTGCTCGTCAAAA------------AT-TAGTTAT-TTSizeHit CountTotal NormTotal
No Reads
droEle1
GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTT-CTATAATTTGATTAAT--TAGCG-----------------T-TTAAAGT----TATCGTTTAA--------TTC----------CTTTTCTGATCG---GCG--TAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-T--TGC------ATTTTCT-------G----T-----------CTCTTTCGTG--CGT--GCGCCTCTGTGACGTCATCCAC------------GACTGA------GGGGATAGAGAAAA---------A--------AAGTTGAACATCAAAA------------AT-TAGTAAC-TTSizeHit CountTotal NormTotal
No Reads
droRho1
GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTT-CTATAATTTGATTAAT--TAACG-----------------TTTTAAAGG----TATCGTTTAA--------TCC----------CCTTTCTGATCG---GGG--TAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-T--AGC------ATTTTCC-------G----T-----------CTCTTTCGTG--CGT--GCGCCCC--TGACGTCATT---------------G-----------GGGGATAGAGAAAA---------A--------AAGTTGACCATAAAAA-------------T-TAGTTAC-TASizeHit CountTotal NormTotal
No Reads
droBia1
GTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGGC-----------------TTTTAAAGT----TATCGTCAAA--------TGC----------CTTT--TGATCG---GCC-TTAAGTGTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGCCTCTCGC------ACTCGCC-------C----TCT---------CTCTTTCCTG--CAT--GCGCCTTTGTGACGTCATC---------------G----C------GGGGATAGAGAAAA------------------AAGTTGCCTGTAAAAA-------------T-TAGTTTT-TTSizeHit CountTotal NormTotal
No Reads
droTak1
GTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGGC----------------GT-TTTAAGT----TATCGTTTAA--------ATC------G--CCTTT--TGATCG---GCGCATAAGTGTTGCGTAAG----------------------------------------------------------------------TGTG----TGTGTG-TCTGCTTCTCGC------ATCT-CC-------C----T-----------CTCTTTCCTT--CAT--GCGCCTTTGTGACGTCATC---------------G----A------GGGGATAGAGAAAA------------------ATGTTGACCGTAAAAA------------AT-TAGTGTT-TTSizeHit CountTotal NormTotal
No Reads
droEug1
GTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTTTGAGGAATTGGTGAGTGCTT-TCATAAT-TAATCAAT--TAGTT-----------------T-TTAAACG----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCGTACAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TATAGC------ATTTTCC-------T----T-----------CTCTTTCTTG--CGT--GCGCCTTTGTGACGTCATC---------------GACTGA-----CGGGAATAGAGAAAA------------------AAGTTGACAATAAAAA-------------A-TAG-TTT-TTSizeHit CountTotal NormTotal
No Reads
dm3
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCAGTCGTT--CGC--TCGCCTTTGTGACGTCATC---------------GTGTCA------GGGAATAGAGAAA-------------------AAGTTGCACATCAAAA------------TTCAAG-TTG-TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................TGAGCAGACCTTTGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-----------CTCAGTCGTT--CGC--TCGCCTA................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GCGTAAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGC................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TAAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGCGGC------A......................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGCGGC------C......................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCATGAGCAGACCTTTGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-----------CTCAGTCGTT--CGC--TCGCCT.................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-----------CTCAGTCGTT--CGC--TCGCCTT................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000
.TCGTCTCGATTGGCAGGGAAACGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCGTCTCGATTGGCAGGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GGGAAACGAGCATGAGCAGACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................ATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TG......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................GCATGAGCAGACCTTTGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CATC---------------GTGTCA------GGGAATAGAGAAA-------------------AAGT.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................TGCGTAAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TG.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATC---------------GTGTCA------.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GC--TCGCCTTTGTGACGTC.......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................................................................................................................................................................................................................................................................................GCCTTTGTGACGTCATC---------------GTGTCA------GGGA.....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TCATC---------------GTGTCA------GGGAATAGAG...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C---------------GTGTCA------GGGAATAGAGAAA-------------------AAGTTG...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGAGCAGACCTTTGAGGAATTGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGTGACGTCATC---------------GTGTCA------GG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGGAAACGAGCATGAGCAGACCTTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CATGAGCAGACCTTTGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.TCGTCTCGATTGGCAGGGAAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GACGTCATC---------------GTGTCA------GGGA.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTTGAGGAATTGGTGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................GTTTAA--------TGC----------CTTT--TGATCG---GC................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................CGAGCATGAGCAGACCTTTGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................C------ATTTTCC-------G----T-----------CTCAGTCGTT--C...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-----------CTCAGTCGTT--CGC--TCGCC..................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................CTTTGAGGAATTGGTGAGTGT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................C--TCGCCTTTGTGACGTCATC---------------GTG..................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGACGTCATC---------------GTGTCA------GGGAA....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AGTCGTT--CGC--TCGCCTTTGTGACG.........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGGAATTGGTGAGTGTTT-TCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................................................................................................................................................................................TCAGTCGTT--CGC--TCGCCTAG...............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGCAGGGAAACGAGCATGAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACGAGCATGAGCAGACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GTT--CGC--TCGCCTTTGTGAC..........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CATGAGCAGACCTTTGAGGAATTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTCGTCTCGATTGGCAGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................C---------------GTGTCA------GGGAATAGAGAAA-------------------.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTCGTCTCGATTGGCAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....TCTCGATTGGCAGGGAAACGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCTCGATTGGCAGGGAAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCATGAGCAGACCTTTGAGGAATTG................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CA------GGGAATAGAGAAA-------------------AAG......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................TGAGGAATTGGTGAGTGTTT-TC...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................................................................................................................................................................................ATTTTCC-------G----T-----------CTCAGTCGTT--CGC--.......................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGAGCATGAGCAGACCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................C--TCGCCTTTGTGACGTCATC---------------.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTTTCC-------G----T-----------CTCAGTCGTT--CGC--.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TT--TGATCG---GCATTTAAGTCTT.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GCCTTTGTGACGTCATC---------------GTG..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
GTCGTCTCGATTGGCAGGGAAACGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCAGTCGTT--CGC--TCGCCTTTGT.............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CGGC------ATTTTCC-------G----T-----------CTCAGTCG................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGATCG---GCATTTAAGTCTTGC...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A------GGGAATAGAGAAA-------------------AAGT.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................AAG----------------------------------------------------------------------TGTG----CG-----TCTGC-TGCGGC------A......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGTGACGTCATC---------------GTGTCA------GGGAA....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...GTCTCGATTGGCAGGGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CCTTTGAGGAATTGGTGAGTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............CAGGGAAACGAGCATGAGCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-----------CTCAGTCGTT--CGC--TCGCCTTT...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAGTTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCTGTCGTT--CGC--GCGCCTTTGTGACGTCATC---------------GTGTGA------GGGAATAGAGAAAA------------------AAGTTGCCCATCCAA-------------TT-AAG---T-TGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................CC-------G----T-----------CTCTGTCGTT--CGC--GCGCC..................................................................................................................2211.00110000000000000000
...................AAACGAGCATGAGCAGACCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................GAAACGAGCATGAGCAGACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................TTCC-------G----T-----------CTCTGTCGTT--CGC--GC.....................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTGACGTCATC---------------GTGTGA------.........................................................................1811.00100000000001000000
....TCTCGATTGGCAGGGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..........................CATGAGCAGACCTTTGAGGAGTTG................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.TCGTCTCGATTGGCAGGGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
droSec2
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------G----T-----------CTCTGTCGTT--CGC--GCGCCTTTGTGACGTCATC---------------GTGTGA------GGGAATAGAGAAAA------------------AAGTTGCCCATCCAA-------------TT-AAG---T-TGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................CAGACCTTTGAGGAATTGGTGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
.......................GAGCATGAGCAGACCTTTGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
......................................................................................................................................................................AAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-...................................................................................................................................................................................2511.0010100
...........................ATGAGCAGACCTTTGAGGAATTGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
...............................................................................................................................................................................................................................................................................................TCC-------G----T-----------CTCTGTCGTT--CGC--GCG....................................................................................................................2111.0011000
..........................................AGGAATTGGTGAGTGTTT-TCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................GCATGAGCAGACCTTTGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTTCAAAGT----TATCGTTTAA--------TGC----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATTTTCC-------A----T-----------CTCTGTCGTG--CGG--GCCCCTTTGTGACGTCATC---------------GGGTGA------GGGGATAGAGACAA------------------AAGTTGCACATCAAAA------------TT-GAG---T-TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
GTCGTCTCGATTGGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
................................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCATC---------------GGGTGA------G........................................................................2111.00101000000000
GTCGTCTCGATTGGCAGGGAAACGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................GACCTTTGAGGAATTGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................1940.75300000000003
droEre2
GTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAAGAATTGGTGAGTGTTT-TCATAAT-TAATCAAT--TAGCT-----------------TTACACAGT----TATCGTTTAA--------TTA----------CTTT--TGATCG---GCATTTAAGTCTTGCGTAAG----------------------------------------------------------------------TGTG----TG-----TCTGC-TGCGGC------ATATTCC-------A----T-----------CTCTGTCGTG--CGT--GCGCCTTTGTGACGTCATT---------------GGGTGA------GGGGATAGAGACAA------------------AAGTTGCATATCAAAA------------TT-AAG---T-TGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....CTCGATTGGCAGGGAAACGAGCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATT---------------GGGTGA------GGGG.....................................................................2511.0010100000
...............................................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATT---------------GGGTGA------GG.......................................................................2311.0010001000

Generated: 05/16/2015 at 11:30 PM