ID:

dvi_15382

 Coordinate:

scaffold_13047:3436706-3436856 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.0 -28.9 -28.8

Flybase annnotation

exon [dvir_GLEANR_8772:2]; CDS [Dvir\GJ23421-cds]; intron [Dvir\GJ23421-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATAATGTGATTATGTAATTGAAAAAGTATGTATGCAATGCATTAAGGCGCAACCTGCGTGGCAGTGCCACGCCCCCTAAGCCTCATCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGCACAATCAACGTTGTTTTTTTTTTTTCTTTTTTGAGATACTAATCCATGTCATTTCTGATTGCGCCCACAGCTTCAGCTCAGTGCCCGTCAGTATTCCCAGCTAGCTGTTGTTGCGGCAGT
**************************************************......(((((((...))))))).......(((((.((....)).))..)))........(((....)))...(((...((.((((((....((...........((((....)))).............))....)))))).))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106730
embryo_16-30h
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR1106715
embryo_4-6h
 SRR1106717
embryo_6-8h
 SRR1106718
embryo_6-8h
 SRR1106720
embryo_8-10h
 V053
head
 SRR060685
9xArg_0-2h_embryos_total
......................................................................................................................................................................................................GAACTTCAGCTCAGTGCCCGTCAG............................. 24 2 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATTCC....................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATT......................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCCCGTCAGTATTCCCAGCT.................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACTTCAGCTCAGTGCCCGT................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTCAGTGCCCGTCAGTAT.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATT.......................................................................................................................... 43 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................TCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGCA....................................................................................................................... 46 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGC........................................................................................................................ 46 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................GAACTTCAGCTCAGTGCCCGTCAGTA........................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTCAGCTCAGTGCCCGTCAGTATTCC....................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATTCCCAGCTAGCTGTTGTTGCGGC... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCCCAGCTAGCTGTTGTTGCGGC... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAACTTCAGCTCAGTGCCCGTCA.............................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCAGCTCAGTGCCCGTCAG............................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACTTCAGCTCAGTGCCCGTCAGTA........................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCAGTGCCCGTCAGTATTCCC...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATTCCC...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCCCAGCTAGCTGTTGTTGCG..... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGC........................................................................................................................ 45 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................GAACTTCAGCTCAGTGCCCGT................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CAGCTAGCTGTTGTTGCGGC... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AGCTCAGTGCCCGTCAGTAT.......................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACTTCAGCTCAGTGCCCGTCA.............................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATTCCCAGCTAGCTGTTGTTGCG..... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACTTCAGCTCAGTGCCCGTCAGT............................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGTATTCCCAGCTAGCTGTTGTT........ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCCCAGCTAGCTGTTGTTGCGGCA.. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................CATCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGC........................................................................................................................ 47 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAGCTCAGTGCCCGTCAGTATTCCC...................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGTGCCCGTCAGTATTCCCAGCTCGCT.............. 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCACGTGACGATCGGCCATCTAACAGCAGTAGCTCCACTGATTGCC....................................................................................................................... 46 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................AGCTGTTGTTGCGGC... 15 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGCGCCATGAGCTTCAGCTC......................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................CTAGTTGTTATTGCGGCA.. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................CTTGATCACGTGACAATCG....................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGAACTTCAGCTCAGTGCCC.................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTATTACACTAATACATTAACTTTTTCATACATACGTTACGTAATTCCGCGTTGGACGCACCGTCACGGTGCGGGGGATTCGGAGTAGTGCACTGCTAGCCGGTAGATTGTCGTCATCGAGGTGACTAACGTGTTAGTTGCAACAAAAAAAAAAAAGAAAAAACTCTATGATTAGGTACAGTAAAGACTAACGCGGGTGTCGAAGTCGAGTCACGGGCAGTCATAAGGGTCGATCGACAACAACGCCGTCA
**************************************************......(((((((...))))))).......(((((.((....)).))..)))........(((....)))...(((...((.((((((....((...........((((....)))).............))....)))))).))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 V047
embryo
 M061
embryo
 M047
female body
 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR1106729
mixed whole adult body
..............................................................................................................................................................................................ACGCGGGTGTCGAAGCCGTG......................................... 20 2 1 4.00 4 1 0 2 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACGCGGGTGTCGAAGCCGTG......................................... 21 3 4 1.25 5 3 0 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GAGTCAGGGTCCGTCATAAGGG...................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTCATCAGGGTCGATCGAGAATAA........ 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCAGGGGCCGTCATAAGGGTG.................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGTCAGGGTCCGTCATAAGGG...................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TAGATAGTCGTCATCGATGT................................................................................................................................ 20 2 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................ATACGCGGGTGTCGAAGCCGAG......................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACGCGGGTGTCGAAGCCG........................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ACGTGGGTGTCGAAGCCGTGT........................................ 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TACGTGGGTGTCGAAGCCGAG......................................... 21 3 10 0.20 2 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTGGGTGTCGAAGTCGTG......................................... 19 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GAGTCAGGGTCCGTCATAAG........................ 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGCGGGTGTCGAAGCCGTG......................................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CAGGTGGCGAAGTCGAGT........................................ 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................AACGTGGGTGTCGAAGCCGTG......................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGTGGGTGTCGAAGCCGTGT........................................ 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................TAGTCATCGAGGTTAGTAA.......................................................................................................................... 19 3 20 0.10 2 0 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................GAGTCAGGGTCCGTCATAA......................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAGAAAAAAAAAAGAAAAAAC....................................................................................... 21 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................CTCTAGTATTAGGTACAATAA................................................................... 21 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTCGAACGACAACAACTC..... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................CGATCAGCAACAAAGCCGT.. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:3436656-3436906 - dvi_15382 CA--TAATGTGATTATGTAATTGAAAAAGTAT--GTATGCA----ATGC-----ATTA-AGGCGCAA-CC-TGC------------GTGGCAGTGCCAC--GCCCCCTAAGCC-TCATCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGCACAATCAACGTTG-----TTTTTTTTTTTTCTTTTTTGAG---------ATACTAATCCATGTCATTTCTGATT---------GCGCCCACAGCTTCAGCTCAGTGCCCGTCAGTATTCCCAGCTAGCTGTTGTTGCGGCAGT
droMoj3 scaffold_6540:20449584-20449825 - CA--TAATGCGATTATGTAATTGAAAAAAT----GTTTGCA----CTGC-----AATG-GGGCGCAA-TC-AGC------------GTGGCAGTGCCAC--GCCTCCATAAAA-TATTCACGTGATGAAC----------------------------------------GC-------AATCT-------T--G---ATAATA--A--ATCAAATTGCACAATATTTGCTT-----TT----------CAGTTTCTATATGCATATTATAGT---------AATGCTCTCTTCCATTGACTACTTTTACAGCTCCAGCTGAGTGCCCGTCAGTATTCCCAGCTGGCTGTGGTTGCTGCATT
droGri2 scaffold_14906:94195-94417 - CG--CAATGCGATTATGTAATAGAGAAAAT----GTTTGCA----ATGC-----ATT-----CGCAA-AA-TGC------------GTGGCACTGCCAC--GCCCCCTTTAAC-AAATCACGAAA-----------------------------------------------------CGATCCAGCATATACCCGTTGCT---GCC-TTTCCGATTGTGCAATAATTAAGTTTTCCTAAAAAA-------------------------TCCT---------AA----CTCTT----C---GGCATCTTCAGCTTCAGCTCAGCGCCCGTCAGTATTCCCAGCTGGCTGCTGTTGTCGCCGT
droWil2 scf2_1100000004902:4419349-4419580 - TGGCTAAGGCGATTATGTAATTGTATG------------TGTACGAGGTGAA--AAAA-G--GGCAAT--AA--AAATGCTTTGA--------------------------------------CACGCCCCCCTTTTGCCAACAGCTGATTGTGTCGGTGTGTG-------GGGTATGTCTCACGTGAGCGGACA-TC------CGC--TCTGAGTTGTGCAATCATTGATT-----TTTTTTTT----C------------------------------------A--TTTT--------TTATTTGACAGCTGAAACGCGGTATTCGTCAGTATTCCCGACTATCTGTCTTATCAGCAGC
dp5 2:29305953-29306195 - CTCCCAATGCGATTATGTAATTGTGTGTGT----GTGTGCGTGCGCCGCTGA--AAAAAT--GGCAAA--AT---GTTTTCCCAGCA--CGGCTGACACGGGCC--C----------------------------TGGCCTACAGCTGACACA---------AGCCGCACGGCACACGTGATCTGACTGACGTTCGCCGCAGTTG-C--TCCTGGTTGTGCAATCATT------------------------------------------------------GATTTTTACTT--------TTCCTCCACAGCTGAAGCGCTGCCTGCGACAGTATTCCCGTCTTGTTGCCGTGTCTGTGGC
droPer2 scaffold_6:4671584-4671826 - CTCCCAATGCGATTATGTAATTGTGTGTGT----GTGTGCGTGCGCCGCTGA--AAAA-A--TGGTAA--AA--TGTTTGCCCAGCA--CGGCTGACACGGGCC--C----------------------------TGGCCCACAGCTGACACA---------AGCCGCACGGCACACGTGATCTGACTGACGTTCGCCGCAGTTG-C--TCCTGGTTGTGCAATCATT------------------------------------------------------GATTTTTACTT--------TTCCTCCACAGCTGAAGCGCTGCCTGCGACAGTATTCCCGTCTTGTTGCCGTGTCTGTGGC
droAna3 scaffold_13340:10764028-10764269 - CA--CAATCAGATTATGTAATTGCATGGGTGTGTGTGTGCGTGCGTTTCTGAAGAAAA-T--GGCAAA--AA---GTAGCC-----A--CAGCTGCCGG--GCCTCCAAAATGAAAAACCTGTGACGCAC----------------------------------------GCTGCACGTGATCCGCCTGCCCCCT-TTTCAATGGCC--ACCCGATTGTGCAATCAACAATT-----TAAAAA-------------------------------------------ACT--GT--------ATATTCCACAGCTGAAACGTTGCATCCGCCAGTATTCCCGGTTAGTTGCCGTATCGGTTGC
droBip1 scf7180000396374:320255-320496 + CA--CAATGAGATTATGTAATTTCATGGGTGTGTGTGTGCGTGTGTTTCTGAGAAAAA-T--GGCAAA-AAA--CTGTTG---------AGGCTGCCGG--GCCTCCAAAATGGAAACCCTGTGACGCAC----------------------------------------GCTTCACGTGATCCGCCTGCCCCCT-TTTCAATCGCC--AACCGATTGTGCAATCAACCATT-----TAAAAAA---------------------------------------------CCAT--------ATCTTCCACAGCTGAAACGTTGCATCCGCCAGTATTCCCGATTAGTTGCCGTATCGGTTGC
droKik1 scf7180000302276:691351-691415 - TT--TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GG--------CTATCCCCCAGTTGAAGCGCTGCATCCGCCAGTATTCCCGGCTTGTCGCCTGTGCCGC---
droFic1 scf7180000453912:1830476-1830669 - -------TGCGATTATGTAATTGTATGGGTGT--GTGTGCGTGCGCGGCTGA--AAAG-T--GGGAAA-AAA--TGTTTGTTTTG--------------------------------------GAAGCCC----------------------------------------GCTGCACGTGATACGTCAGCCGACA-TC------CGT--TCCCGATTGTGCAATCACT------------------------------------------------------AACGATTGGAT--------ATATCCCTCAGCTAAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGTGCCGC--A
droEle1 scf7180000491080:2632979-2633177 - CA--CTCTGCGATTATGTAATTGTATGGGTGT--GTGTGCGTGCGGGGCTGA--AAAA-T--GGGGAA-AAA--CTATTGTTTTG--------------------------------------GACGCCC----------------------------------------AGCGCACGTGATCCGACAGCCGCCA-TC------CGT--TCCTGATTGTGCAATCACT------------------------------------------------------AATTTTAACAT--------CCATCCACCAGTTGAAGCGCTGCATCCGTCAGTATTCCAGGCTAGTCGTCTGTGCCGC--C
droRho1 scf7180000780060:39920-40115 - CA--CTCTGCGATTATGTAATTGTATGGGT----GTGTGCGTGCGCGGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTTG--------------------------------------GACGCCC----------------------------------------ACTGCACGTGATCCGTCAGCCGCCA-TC------CGT--TCCTAGTTGTGCAATCACT------------------------------------------------------AATTTTCACAT--------CTATCCACCAGCTGAAGCGTTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--A
droBia1 scf7180000302075:3691999-3692067 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCACCT--------CTGCCCACCAGCTGAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--C
droTak1 scf7180000413959:56196-56386 - ----------GGTTATGTAATTGTATGGGTGT--GTGTGCGTGCGCGGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTTG--------------------------------------GACGCCCC---------------------------------------GCCGCACGTGATCCGTCAGCCGCCG-CC------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATTTTCTCCT--------CTGCCCACCAGCTGAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--C
droEug1 scf7180000409797:689157-689228 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------AATTTTTGCCT--------CTATCCGCCAGTTGAAGCGCTGCATTCGTCAATATTCCCGGCTAGTCGTTTGTGCCGC--C
dm3 chr3R:7070367-7070556 + ----------GATTATGTAATTGTATGGGTGT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCGCCAGGTAAAGCGCTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--C
droSim2 3r:14022939-14023129 - C---------GATTATGTAACTGTATGGGTGT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCGCCAGGTAAAGCGTTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--C
droSec2 scaffold_0:14884238-14884426 - C---------GATTATGTAACTGTATGGGT----GTGTGCGTGCACCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCCCCAGGTAAAGCGTTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--C
droYak3 3R:11103557-11103744 + ----------GATTATGTAATTGTATGGGT----GTGTGCGTGCGTCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCA----------------------------------------GCTGCACGTGATCCGTCAGCCGACG-TC------TCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATTATCGCTT--------CTTTCCGCCAGCTGAAGCGCTGCATCCGCCAATATTCCCGGTTAGTTGCCTGTGCCGC--C
droEre2 scaffold_4770:14549612-14549800 - ----------GATTATGTAATTGTATGGGTTT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGATCCGTCAGCCGTCA-TC------TCC--TCCTGATTGTGCAATCACT------------------------------------------------------AATAATCGCTT--------CTTTTCGCCAGCTGAAGCGCTGCATCCGCCAATACTCACGGTTAGTTGCCTGTGCCGC---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CA--TAATGTGATTATGTAATTGAAAAAGTAT--GTATGCA----ATGC-----ATTA-AGGCGCAA-CC-TGC------------GTGGCAGTGCCAC--GCCCCCTAAGCC-TCATCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGCACAATCAACGTTG-----TTTTTTTTTTTTCTTTTTTGAG---------ATACTAATCCATGTCATTTCTGATT---------GCGCCCACAGCTTCAGCTCAGTGCCCGTCAGTATTCCCAGCTAGCTGTTGTTGCGGCAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATTCC.......................2212.002002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATT.........................2011.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GCCCGTCAGTATTCCCAGCT..................2011.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTCAGTGCCCGTCAGTAT..........................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATT.................................................................................................................................................4311.001000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................TCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGCA..............................................................................................................................................4611.001000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................ATCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGC...............................................................................................................................................4611.001000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................TTCAGCTCAGTGCCCGTCAGTATTCC.......................2611.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCCCAGCTAGCTGTTGTTGCGGC...2511.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................TTCCCAGCTAGCTGTTGTTGCGGC...2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TCAGCTCAGTGCCCGTCAG.............................1911.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCAGTGCCCGTCAGTATTCCC......................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTCAGTGCCCGTCAGTATTCCC......................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCCCAGCTAGCTGTTGTTGCG.....2111.001000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGC...............................................................................................................................................4511.001000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CAGCTAGCTGTTGTTGCGGC...2011.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCTCAGTGCCCGTCAGTAT..........................2011.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCCCAGCTAGCTGTTGTTGCG.....2311.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................CAGTATTCCCAGCTAGCTGTTGTT........2411.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCCCAGCTAGCTGTTGTTGCGGCA..2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................CATCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGC...............................................................................................................................................4711.001000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................CAGCTCAGTGCCCGTCAGTATTCCC......................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................TCACGTGA-----------------------------------------------------CGATCGGCCATCTAACA---GCAGTAG-CTCCACTGATTGCC..............................................................................................................................................4611.001000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................................................................................................................................................................................................AGCTGTTGTTGCGGC...1540.251000000000000000000000000000000000000000000000000000000000010000
droMoj3
CA--TAATGCGATTATGTAATTGAAAAAAT----GTTTGCA----CTGC-----AATG-GGGCGCAA-TC-AGC------------GTGGCAGTGCCAC--GCCTCCATAAAA-TATTCACGTGATGAAC----------------------------------------GC-------AATCT-------T--G---ATAATA--A--ATCAAATTGCACAATATTTGCTT-----TT----------CAGTTTCTATATGCATATTATAGT---------AATGCTCTCTTCCATTGACTACTTTTACAGCTCCAGCTGAGTGCCCGTCAGTATTCCCAGCTGGCTGTGGTTGCTGCATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................AATG-GGGCGCAA-TC-AGC------------G...................................................................................................................................................................................................................................................................................1811.001000100
droGri2
CG--CAATGCGATTATGTAATAGAGAAAAT----GTTTGCA----ATGC-----ATT-----CGCAA-AA-TGC------------GTGGCACTGCCAC--GCCCCCTTTAAC-AAATCACGAAA-----------------------------------------------------CGATCCAGCATATACCCGTTGCT---GCC-TTTCCGATTGTGCAATAATTAAGTTTTCCTAAAAAA-------------------------TCCT---------AA----CTCTT----C---GGCATCTTCAGCTTCAGCTCAGCGCCCGTCAGTATTCCCAGCTGGCTGCTGTTGTCGCCGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGGCTAAGGCGATTATGTAATTGTATG------------TGTACGAGGTGAA--AAAA-G--GGCAAT--AA--AAATGCTTTGA--------------------------------------CACGCCCCCCTTTTGCCAACAGCTGATTGTGTCGGTGTGTG-------GGGTATGTCTCACGTGAGCGGACA-TC------CGC--TCTGAGTTGTGCAATCATTGATT-----TTTTTTTT----C------------------------------------A--TTTT--------TTATTTGACAGCTGAAACGCGGTATTCGTCAGTATTCCCGACTATCTGTCTTATCAGCAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................AACAGCTGATTGTGTCGGG...........................................................................................................................................................................................................1911.00100100
...............................................................................................................................................................................................................................................................................................................................GCGGTATTCGTCAGTATTCC.......................2011.00110000
.................................................................................................................................................................................................................................................................................................................................................CCCGACTATCTGTCTTATCAGCAGC2511.00110000
...................................................................................................................................................................................................................................................................................................................................TATTCGTCAGTATTCCCGACTATCTGTCT..........2911.00101000
.......................................................................................................................................................................................................................................................................................................................GCTGAAACGCGGTATTCG.................................1811.00101000
..............................................................................................................................................................................................................................................................................................................................CGCGGTATTCGTCAGTATTCCCGAC...................2511.00110000
.................................................................................................................................................................................................................................................................................................................................GGTATTCGTCAGTATTCC.......................1811.00100010
............................................................................................................................................................GGTGTGTG-------GGGTATGTCTCACGTGAGC............................................................................................................................................................................2711.00100010
dp5
CTCCCAATGCGATTATGTAATTGTGTGTGT----GTGTGCGTGCGCCGCTGA--AAAAAT--GGCAAA--AT---GTTTTCCCAGCA--CGGCTGACACGGGCC--C----------------------------TGGCCTACAGCTGACACA---------AGCCGCACGGCACACGTGATCTGACTGACGTTCGCCGCAGTTG-C--TCCTGGTTGTGCAATCATT------------------------------------------------------GATTTTTACTT--------TTCCTCCACAGCTGAAGCGCTGCCTGCGACAGTATTCCCGTCTTGTTGCCGTGTCTGTGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................TTCCCGTCTTGTTGCCGTGTC......2111.0010000001000
........................................................................................................................................................................................................................................................................................................................CTGAAGCGCTGCCTGCGACAG.............................2111.0010000010000
..................................................................................................................................................................................................................................................................................................................................................CCGTCTTGTTGCCGTGTCTG....2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................GTATTCCCGTCTTGTTGCCGT.........2111.0010100000000
........................................................................................................................................................................................................................................................................................................................CTGAAGCGCTGCCTGCGACAGTATTCCC......................2811.0010000001000
...........................................................................................................................................................................................................................................................................................................................AAGCGCTGCCTGCGACAGTATTCCC......................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................GTCTTGTTGCCGTGTCTG....1811.0010000010000
....................................................................................................................................................................................................................................................................................................................................................GTCTTGTTGCCGTGTCTGTG..2011.0010100000000
................................................................................................................................................................................................................................................................................................................................CTGCCTGCGACAGTATTCCCGTCTTGTTG.............2911.0010010000000
droPer2
CTCCCAATGCGATTATGTAATTGTGTGTGT----GTGTGCGTGCGCCGCTGA--AAAA-A--TGGTAA--AA--TGTTTGCCCAGCA--CGGCTGACACGGGCC--C----------------------------TGGCCCACAGCTGACACA---------AGCCGCACGGCACACGTGATCTGACTGACGTTCGCCGCAGTTG-C--TCCTGGTTGTGCAATCATT------------------------------------------------------GATTTTTACTT--------TTCCTCCACAGCTGAAGCGCTGCCTGCGACAGTATTCCCGTCTTGTTGCCGTGTCTGTGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................ATCTGACTGACGTTCGCC....................................................................................................................................................................1811.001100000
...............................................................................................................................................................................................................................................................................................................................GCTGCCTGCGACAGTATTCCC......................2111.001010000
..................................................................................................................................................................................................................................................................................................................................GCCTGCGACAGTATTCCCGTCT..................2211.001010000
........................................................................................................................................................................................................................................................................................................................CTGAAGCGCTGCCTGCGACA..............................2011.001000001
droAna3
CA--CAATCAGATTATGTAATTGCATGGGTGTGTGTGTGCGTGCGTTTCTGAAGAAAA-T--GGCAAA--AA---GTAGCC-----A--CAGCTGCCGG--GCCTCCAAAATGAAAAACCTGTGACGCAC----------------------------------------GCTGCACGTGATCCGCCTGCCCCCT-TTTCAATGGCC--ACCCGATTGTGCAATCAACAATT-----TAAAAA-------------------------------------------ACT--GT--------ATATTCCACAGCTGAAACGTTGCATCCGCCAGTATTCCCGGTTAGTTGCCGTATCGGTTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................GTTGCATCCGCCAGTATTCCCGGTTAG................2712.002200000
.....................................................................................................................................................................................................................................................................................................................................................GTTAGTTGCCGTATCGGTTG.2011.001100000
........................................................................................................................................................................................................................................................................................................................................GCCAGTATTCCCGGTTAGTT..............2011.001000010
.........................................................................................................................................................................................................................................................................................................................TGAAACGTTGCATCCGCCAGT............................2111.001010000
........................................................................................................................................................................................................................................................................................................................CTGAAACGTTGCATCCGCCAG.............................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................GGTTAGTTGCCGTATCGGT...1911.001100000
....................................................................................................................................................................................................................................................................................................................................................GGTTAGTTGCCGTATCGGC...1911.001010000
............................................................................................................................................................................................................................................................................................................................................GTATTCCCGGTTAGTTGCC...........1911.001100000
....................................................................................................................................................................................................................................................................................................................................ATCCGCCAGTATTCCCGGTTAGTTGCC...........2711.001010000
...............................................................................................................................................................................................................................................................................................................................GTTGCATCCGCCAGTATTCCCGGT...................2411.001100000
.......................................................................................................................................................................................................................................................................................................................GCTGAAACGTTGCATCCGCC...............................2011.001010000
.................................................................................................................................................................................................................................................................................................................................TGCATCCGCCAGTATTCCCGGTTAGT...............2611.001000001
...........................................................................................................................................................................................................................................................................................................................................AGTATTCCCGGTTAGTTGCCGTATC......2511.001000010
................................................................................................................................................................................................................................................................................................................................TTGCATCCGCCAGTATTCCCGGTTAG................2611.001010000
....................................................................................................................................................................................................................................................................................................................................ATCCGCCAGTATTCCCGGTTAGTT..............2411.001001000
....................................................................................................................................................................................................................................................................................................................................ATCCGCCAGTATTCCCGGTTAG................2211.001100000
droBip1
CA--CAATGAGATTATGTAATTTCATGGGTGTGTGTGTGCGTGTGTTTCTGAGAAAAA-T--GGCAAA-AAA--CTGTTG---------AGGCTGCCGG--GCCTCCAAAATGGAAACCCTGTGACGCAC----------------------------------------GCTTCACGTGATCCGCCTGCCCCCT-TTTCAATCGCC--AACCGATTGTGCAATCAACCATT-----TAAAAAA---------------------------------------------CCAT--------ATCTTCCACAGCTGAAACGTTGCATCCGCCAGTATTCCCGATTAGTTGCCGTATCGGTTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TT--TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GG--------CTATCCCCCAGTTGAAGCGCTGCATCCGCCAGTATTCCCGGCTTGTCGCCTGTGCCGC---SizeHit CountTotal NormTotal
No Reads
droFic1
-------TGCGATTATGTAATTGTATGGGTGT--GTGTGCGTGCGCGGCTGA--AAAG-T--GGGAAA-AAA--TGTTTGTTTTG--------------------------------------GAAGCCC----------------------------------------GCTGCACGTGATACGTCAGCCGACA-TC------CGT--TCCCGATTGTGCAATCACT------------------------------------------------------AACGATTGGAT--------ATATCCCTCAGCTAAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGTGCCGC--ASizeHit CountTotal NormTotal
No Reads
droEle1
CA--CTCTGCGATTATGTAATTGTATGGGTGT--GTGTGCGTGCGGGGCTGA--AAAA-T--GGGGAA-AAA--CTATTGTTTTG--------------------------------------GACGCCC----------------------------------------AGCGCACGTGATCCGACAGCCGCCA-TC------CGT--TCCTGATTGTGCAATCACT------------------------------------------------------AATTTTAACAT--------CCATCCACCAGTTGAAGCGCTGCATCCGTCAGTATTCCAGGCTAGTCGTCTGTGCCGC--CSizeHit CountTotal NormTotal
No Reads
droRho1
CA--CTCTGCGATTATGTAATTGTATGGGT----GTGTGCGTGCGCGGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTTG--------------------------------------GACGCCC----------------------------------------ACTGCACGTGATCCGTCAGCCGCCA-TC------CGT--TCCTAGTTGTGCAATCACT------------------------------------------------------AATTTTCACAT--------CTATCCACCAGCTGAAGCGTTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--ASizeHit CountTotal NormTotal
No Reads
droBia1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCACCT--------CTGCCCACCAGCTGAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--CSizeHit CountTotal NormTotal
No Reads
droTak1
----------GGTTATGTAATTGTATGGGTGT--GTGTGCGTGCGCGGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTTG--------------------------------------GACGCCCC---------------------------------------GCCGCACGTGATCCGTCAGCCGCCG-CC------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATTTTCTCCT--------CTGCCCACCAGCTGAAGCGCTGCATCCGCCAGTATTCCCGGCTAGTCGTCTGCGCCGC--CSizeHit CountTotal NormTotal
No Reads
droEug1
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------AATTTTTGCCT--------CTATCCGCCAGTTGAAGCGCTGCATTCGTCAATATTCCCGGCTAGTCGTTTGTGCCGC--CSizeHit CountTotal NormTotal
No Reads
dm3
----------GATTATGTAATTGTATGGGTGT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCGCCAGGTAAAGCGCTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................TTCTCGGTTAGTTGCCTGCGCCGC--C2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCGCTGCATCCGCCAATA...........................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCGCTGCATCCGCCAAT............................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGCCTGC........2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCCAATATTCTCGGTTAGT...............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATTCTCGGTTAGTTGCCTGCGCC.....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AGGTAAAGCGCTGCATCCGCCA..............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCTCGGTTAGTTGCCTGCGCC.....2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGGGTGT--GTGTGCGTGCGCCGC.........................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATTCTCGGTTAGTTGCCTGCGCCGC--.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGCCTGCGCC.....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................CTCGGTTAGTTGCCTGCGC......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCCAGGTAAAGCGCTGCATCCG.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TGCATCCGCCAATATTCTCGGTTAGT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AGGTAAAGCGCTGCATCC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGCCTGCGC......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATATTCTCGGTTAGTTGCCT..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCCGCCAGGTAAAGCGCTGC......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................GTGCAATCACT------------------------------------------------------AATATTTGCT......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCTCGGTTAGTTGCCTGC........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATTCTCGGTTAGTTGCCTGCGCCG....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................AAGCGCTGCATCCGCCAAT............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCGCTGCATCCGCCAATAT..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AAAGCGCTGCATCCGCCAA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AGGTAAAGCGCTGCATCCGCCAATA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AA--CTTTTGTTTGG--------------------------------------GACGC..........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................CGCCAATATTCTCGGTTAGTTGC............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCGCTGCATCCGCCAATA...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CGACG-TT------GCC--TCCTGGTTGTGCAAT..........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AA--CTTTTGTTTGG--------------------------------------GACGCC.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................GCCAATATTCTCGGTTAG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTGCGCCGCTGA--AAAA-T--GGGA........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGCCAATATTCTCGGTTAGTTG.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATTCTCGGTTAGTTGCC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGC............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................GGTTAGTTGCCTGCGCCGC--C2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCGCTGCATCCGCCAATAT..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTGCGCCGCTGA--AAAA-T--G...........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGA.........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GTTAGTTGCCTGCGCCGC--C1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGTAAAGCGCTGCATCCGCCA..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGCCAATATTCTCGGTTAGTTGCCTG.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................................................................TTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACG........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................ATATTCTCGGTTAGTTGCCTGCGCC.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCTCGGTTAGTTGCCT..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................TTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCA..........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATTCTCGGTTAGTTGCCTGCGCCGC--C2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................CTGA--AAAA-T--GGGAAA--AA--CTTTT...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCGCTGCATCCGCCAATATT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TCGGTTAGTTGCCTGCGCCGC--C2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CACT------------------------------------------------------AATATTTGCTT--------CTTTCC.......................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGGGTGT--GTGTGCGTGCGCC...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................ATTGTATGGGTGT--GTGTGCT.................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C---------GATTATGTAACTGTATGGGTGT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCGCCAGGTAAAGCGTTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................TCCGCCAATATTCTCGGTTAGTTGCC...........2612.00200010001000000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTT..............1711.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................ATTCTCGGTTAGTTGCCTGCGCC.....2311.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................AAGCGTTGCATCCGCCAATATTCTCGG....................2711.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................TGCATCCGCCAATATTCTCGGTT..................2311.00100000001000000000
............................................................................................................................................................................................................................................................................................................................AGCGTTGCATCCGCCAATATTCTCGG....................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................TCTCGGTTAGTTGCCTGCGCCGC--C2411.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................CTCGGTTAGTTGCCTGCGCC.....2011.00101000000000000000
............................GTGT--GTGTGCGTGCGC............................................................................................................................................................................................................................................................................................................................16160.13200000000002000000
droSec2
C---------GATTATGTAACTGTATGGGT----GTGTGCGTGCACCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGACCCGTCAGCCGACG-TT------GCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATATTTGCTT--------CTTTCCCCCAGGTAAAGCGTTGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGC--CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGCCTGCGCCGC--C2912.0020200
...........................................................................................................................................................................................................................................................................................................................................AATATTCTCGGTTAGTTGC............1911.0010010
..................................................GA--AAAA-T--GGGAAA--AA--CTTTTG..........................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................................................................................ATATTCTCGGTTAGTTGCCTGCGCCGC--.2711.0010001
........................................................................................................................................................................................................................................................................................................................................GCCAATATTCTCGGTTAGTTGCCT..........2411.0010010
.........................................................................................................................................................................................................................................................................................................................TAAAGCGTTGCATCCGCCA..............................1911.0010100
..............................................................................................................................................................................................................................................................................................................................................ATTCTCGGTTAGTTGCCTGCGCC.....2311.0010010
droYak3
----------GATTATGTAATTGTATGGGT----GTGTGCGTGCGTCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCA----------------------------------------GCTGCACGTGATCCGTCAGCCGACG-TC------TCC--TCCTGGTTGTGCAATCACT------------------------------------------------------AATTATCGCTT--------CTTTCCGCCAGCTGAAGCGCTGCATCCGCCAATATTCCCGGTTAGTTGCCTGTGCCGC--CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................GCTGAAGCGCTGCATCCGCCA..............................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................ATTCCCGGTTAGTTGCCTGTGCC.....2311.00100100000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCCCGGTTAGTTGCCTGTGC......2511.00100100000000
........................ATGGGT----GTGTGCGTGCGTCGCTG.......................................................................................................................................................................................................................................................................................................................2311.00100010000000
...............................................................................................................................................................................ACGTGATCCGTCAGCCGACG-TC------T.............................................................................................................................................................2311.00100000100000
........................................................................................................................................................................................................................................................................................................................CTGAAGCGCTGCATCCGCCA..............................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................AATATTCCCGGTTAGTTGCCTGTGCC.....2611.00100001000000
droEre2
----------GATTATGTAATTGTATGGGTTT--GTGTGCGTGCGCCGCTGA--AAAA-T--GGGAAA--AA--CTTTTGTTTGG--------------------------------------GACGCCC----------------------------------------GCTGCACGTGATCCGTCAGCCGTCA-TC------TCC--TCCTGATTGTGCAATCACT------------------------------------------------------AATAATCGCTT--------CTTTTCGCCAGCTGAAGCGCTGCATCCGCCAATACTCACGGTTAGTTGCCTGTGCCGC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................GAAGCGCTGCATCCGCCAATACT.........................2311.0011000000
............................................................................................................................................................................................................................................................................................................................................ATACTCACGGTTAGTTGCCT..........2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................TACTCACGGTTAGTTGCCTGTGCCG....2511.0011000000
...........................................................................................................................................................................................................................................................................................................................................AATACTCACGGTTAGTTGCCT..........2111.0011000000
..................................................................................................................................................................................................................................................................................................................................GCATCCGCCAATACTCACGGT...................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................GCCAATACTCACGGTTAGTTGCCT..........2411.0010100000
...........................................................................................................................................................................................................................................................................................................................................AATACTCACGGTTAGTTGCC...........2011.0011000000
........................................................................................................................................................................................................................................................................................................................................GCCAATACTCACGGTTAGTTGCCTG.........2511.0011000000
.......................................................................................................................................................................................................................................................................................................................GCTGAAGCGCTGCATCCGCC...............................2011.0010100000
..........................................................................................................................................................................................................................................................................................................................GAAGCGCTGCATCCGCCAATACTCAC......................2611.0011000000

Generated: 05/16/2015 at 11:18 PM