dvi_15379

GGGACCGTAACGTCCTGGTCGGGCACCAGTTACGGCAGTAGTCACTAGTCCATTCATAGGTCAAATAAAGAAATACACGGAACAGCAGAGAAATATCATCGGATATGACAGAAAATTGACCCATGTCCCATTCTTTTTAACTAGCTACAACAGTCAATCTTATAGTTTTAGACCTTTTCGTTTCTTTTCTCAACACTTATAGGGATCTCTGTGTACTGACTATTGCATCACCGTTTTAACCCGGCTAAGGC ************************************************.......(((((....((((((..(((((((.((.........((((((.....))))))......)).)))))))....))))))(((((((.......))))))).............)))))..........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M047 female body	SRR060668 160x9_males_carcasses_total	M027 male body	SRR060665 9_females_carcasses_total	SRR060675 140x9_ovaries_total	M028 head	SRR060669 160x9_females_carcasses_total	SRR060670 9_testes_total
......................CCACCAGTTACGGCAGAAGT.................................................................................................................................................................................................................	20	2	2	3.00	6	2	3	0	1	0	0	0	0	0
.................................GGCAGTAGTCACTAGTCCATT.....................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................CCATTCTATTTAACTACTTACAA.....................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ACAGGGATCTCGGTTTACTG.................................	20	3	6	0.33	2	1	0	0	0	0	1	0	0	0
............................GTTACGGCATTAGTAACTGG...........................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................CCAGTCTATTTAACTACCTAC.......................................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	1	0	0
.................................................................................................................................ATTTTTTTTAACTATCTAC.......................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	1
...............................................................................................................................CCATTCTATTTAACTACTTA........................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:3431164-3431414 -	dvi_15379	CCCTG-GC--------AT--TGCAG-GACCAGCCCGTGGTCAATGCCGTCATCAGTGATCAGGTAAGTATCCAGTT-TATTTCTTTAT---------------------------GTGCCTTGTCGTCTCTTTATAGTAGCCTATACTGTCT-TTTAACTG-----GGTACAGGGTAAGAAAAATTGATCGATGTTGTCAGTTAGAATATCAAAATCTGGAAAA----------------GCAAAGAAAAGAGTTGTGAATATCCCTAGAGACAC-AT------------------------------------GACTGATAACGTAGTGGCAAAATTGG------------------------------------------------------------GCCGAT---------TCCG--------------
droMoj3	scaffold_6540:20448457-20448555 -		CCTAT-GC--------GC--TGCAA-GACCAGCCTGTTGTCAACGCCGTCATCGATGGCCAGGTAAATT------T-TACTCCTGAAT---------------------------CACTTGTGACGTATATAATTAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------TTAT--------------
droGri2	scaffold_14906:93011-93109 -		CCTAT-GC--------GC--TGCAG-GATCAGCCTGTTGTGAATGCTGTCATCGATGGTCAGGTAACCC------A-TTTCACTTAGT---------------------------CACTTGTGACGCTTCTGTTTATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC---------TTAT--------------
droWil2	scf2_1100000004902:4418242-4418296 -		CCTAT-GC--------TC--TGCAA-GATCAGCCTGTTGTCAATGCTGTTATCGATGGCCAGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:29304779-29304836 -		CCTAT-GC--------GC--TCCAG-GACCAGCCCGTGGTGAACGCTGTCATCGATGGCACGGTAAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_566:645-730 +		AGCCG-CC---------T-----------------------------------------------------------------------------------------------------------------------------ATGCTGTGT-GTTAGAGA-----GAGACAGGGC---------------------------------------------------------------------------------------------------GAGAAAAA------------------------------------------ATGAAATTGTTT-----------------------TCTTGAT---GCTGGCTATAATAA-------------TAATACGATC--------------------------
droAna3	scaffold_7774:49287-49372 +		TATGA-AA--------TC--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------GAAAAACA------------------------------------------ACGAAGTTATGGCATTTCCGATGAAT-------------------CAGTTATATGGCAGCTATGGGATATAGTCGACCGATC---------CCG--------------
droBip1	scf7180000393414:2935-3042 +		AAATA-GC--------TCAT--AGCT----------------------CT------------------------------------------CATTTGAACTCTC----------------------------------------------------------------------------------------------------------TAACTCTAA-----------------------------------------------------------AAAA------------------------------------------CCAAAGTTATACCATTTCCGATCAAT-------------------CAGTTAGATAGCA-CTATTGGATATAGTCGGCCGAT---------TCCG--------------
droKik1	scf7180000302694:470907-471008 +		TTGTC-AA--------AG--TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAA------------------------------------AATACGTT------------------GAAAAACA------------------------------------------ACGAAAAAAAACT------TATCGAA-------------------CATTTGTATGGCAGCTATATGATATAGTCGTCCGATCCGGCCCGTTCCG--------------
droFic1	scf7180000452651:13993-14242 -		CAATG-AC--------GT--TATCA-ATTAA-----------TTTCCAT----------------------------TAATTCTATATATATTTTTTGGTCTCTC--------------------------CTATGGCA-TCTATATTATAGAGTTATCCGATTTCGATAAAATTTAAAACGAAAT--TCAATATT---AGTTAGAAAA-CGCCATCTGGAAAAAATCAAG-TCGATCTG---------------AT------------------CAAAAACA------------------------------------------AGGGAGTGAGATTTTT---TTTTAAT-------------------TTCTCGTATATGAGCTATCCGATATAGTTGGCAGATCCGACCCGTTCCGACTTATATACTGC-
droEle1	scf7180000488060:6278-6395 -		AATAA-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCATTAT------------------------------------------------------TATATGTCGAAGAACT-AAAAAAAAAGAAAAACA------------------------------------------GCAAAGTTATAATTTTTCT------TAATTTATTTTTCTGAT-------------------TGTTCCTATAGTCGTCCGATCCGGCTCGTTCCG--------------
droRho1	scf7180000773290:1409-1560 -		TTTTAAAC--------GT-TTGCAA-AGAAAAACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATATTGTTAT--AGAAAA-CAA-----GAAAGAAATCAAACTTCGGCTT---------------GC------------------CGAAACCAAACGACTACATTTCGATTTCTATGGCTATATTACTAAAAACAATGAAGCTATGTCGT------------------------------------------------------------TCCGAC---------TTAT--------------
droBia1	scf7180000300778:6435-6541 -		GTTAT-AAAAAATAATCAAT--AATT----------------------TTATC-----------------------A----------------AATTGAATT-CGAAATTCTAAAAAATAGAAATATTTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGATATAATTGTCCGATCCGGCTGGA--------ATATAGTGCC
droTak1	scf7180000415864:135207-135341 +		CAGGA-TA----AAACAAAT--AAAT----------------------AAATT-----------------------A----------------AATTAAATT-AGAATT--------------------------------------------------------------------------------------------------------------------------------------------------TC------------------AAAAAACA------------------------------------------CCGAAGCTAGAATTTGTTA------ACGATTTTTTTTCCGAT---CCTTCCTATGGCAGCTATAAGATATAGTTGTCCGATCCGGTCGGTTCCG--------------
droEug1	scf7180000409797:690473-690605 +		CCTAT-GC--------GC--TTCAG-GATCAGCCCGTGGTGAACGCTGTCATCGATGGCACGGTAAACAC-------------------------------------------------------GCCTCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTCTGCT-------------------TATAATTGCCT-----------------------T----ATCGCCCGTGACGTAGCT-TGATAGGCCATA--CTGTTTAA---------ACTG--------------
dm3	chr3R:7071556-7071612 +		CCTAT-GC--------GC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3r:7431204-7431318 -		AACGG-AT--------TC--ATGCG---------AGGAGTAAGAACCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCTAGGCAT----------------ACAAAGAAAAAAATGTTGAAAAATCTAAAAAAAAA-AA------------------------------------AACTAAAAACAAAAATGCAAAAAGAA------------------------------------------------------------GTTAAT---------TTAT--------------
droSec2	scaffold_0:14883195-14883251 -		CCTAT-GC--------TC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATTGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:11104775-11104831 +		CCTAT-GC--------GC--TGCAG-GATCAGCCCGTGGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4770:14548540-14548596 -		CCTAT-GC--------GC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCCTG-GC--------AT--TGCAG-GACCAGCCCGTGGTCAATGCCGTCATCAGTGATCAGGTAAGTATCCAGTT-TATTTCTTTAT---------------------------GTGCCTTGTCGTCTCTTTATAGTAGCCTATACTGTCT-TTTAACTG-----GGTACAGGGTAAGAAAAATTGATCGATGTTGTCAGTTAGAATATCAAAATCTGGAAAA----------------GCAAAGAAAAGAGTTGTGAATATCCCTAGAGACAC-AT------------------------------------GACTGATAACGTAGTGGCAAAATTGG------------------------------------------------------------GCCGAT---------TCCG--------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................CAATGCCGTCATCAGTGATCAGGAG................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......C--------AT--TGCAG-GACCAGCCCGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TGGCAAAATTGG------------------------------------------------------------GCC..............................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................TGCAG-GACCAGCCCGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TGGCAAAATTGG------------------------------------------------------------GCCA.............................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droMoj3

CCTAT-GC--------GC--TGCAA-GACCAGCCTGTTGTCAACGCCGTCATCGATGGCCAGGTAAATT------T-TACTCCTGAAT---------------------------CACTTGTGACGTATATAATTAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------TTAT--------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................AGCCTGTTGTCAACGCCGTCATCG...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
....................TGCAA-GACCAGCCTGTTGTCAACGC...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................GCAA-GACCAGCCTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
................GC--TGCAA-GACCAGCCTGTTGTCAACGC...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................GCAA-GACCAGCCTGTTGTCAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

CCTAT-GC--------GC--TGCAG-GATCAGCCTGTTGTGAATGCTGTCATCGATGGTCAGGTAACCC------A-TTTCACTTAGT---------------------------CACTTGTGACGCTTCTGTTTATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC---------TTAT--------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................TGAATGCTGTCATCGATGGTCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1

droWil2

CCTAT-GC--------TC--TGCAA-GATCAGCCTGTTGTCAATGCTGTTATCGATGGCCAGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.CTAT-GC--------TC--TGCAA-GATCAGCCTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	1	1	0
.................................CTGTTGTCAATGCTGTTATCGATGGC......................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
.....................................TGTCAATGCTGTTATCGATGGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0
...AT-GC--------TC--TGCAA-GATCAGCCTGTTGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0
...........................ATCAGCCTGTTGTCAATGCT..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
...............................GCCTGTTGTCAATGCTGT................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
....................TGCAA-GATCAGCCTGTTGTCAATGCTGT................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
............................................GCTGTTATCGATGGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.................C--TGCAA-GATCAGCCTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..TAT-GC--------TC--TGCAA-GATCAGCCTGTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.........................................AATGCTGTTATCGATGGCCAG...................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...AT-GC--------TC--TGCAA-GATCAGC................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......C--------TC--TGCAA-GATCAGCCTGTTGTCAATGC...................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...............................GCCTGTTGTCAATGCTGTT...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
.....................................TGTCAATGCTGTTATCGATGGC......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...................................GTTGTCAATGCTGTTATC............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..TAT-GC--------TC--TGCAA-GATCAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..........................................ATGCTGTTATCGATGGCCAGGAT................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.................................CTGTTGTCAATGCTGTTATC............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...AT-GC--------TC--TGCAA-GATCAGCCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
......................................GTCAATGCTGTTATCGATGGC......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................A-GATCAGCCTGTTGTCAATGCT..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....T-GC--------TC--TGCAA-GATCAGCCTGTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..................................TGTTGTCAATGCTGTTATCGATG........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................................TGTTGTCAATGCTGTTATCGATGG.......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...AT-GC--------TC--TGCAA-GATCAGCCTGTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................TCAGCCTGTTGTCAATGCT..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................CAATGCTGTTATCGATGGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
................TC--TGCAA-GATCAGCCTGTTGTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.................C--TGCAA-GATCAGCCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..TAT-GC--------TC--TGCAA-GATCAGCCTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.............................................CTGTTATCGATGGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................GTCAATGCTGTTATCGATGGCCAGGAT................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
......................................GTCAATGCTGTTATCGATGGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................TGTTGTCAATGCTGTTATCGATGGCC.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
...............................................GTTATCGATGGCCAGGAT................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	1	0

dp5

CCTAT-GC--------GC--TCCAG-GACCAGCCCGTGGTGAACGCTGTCATCGATGGCACGGTAAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................CCAG-GACCAGCCCGTGGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3	0	0	0	0
..TAT-GC--------GC--TCCAG-GACCAGCCCGTGGTG........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................G-GACCAGCCCGTGGTGAACGCTGTCA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................G-GACCAGCCCGTGGTGAACGCT..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................CCAG-GACCAGCCCGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................GAACGCTGTCATCGATGG.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCCG-CC---------T-----------------------------------------------------------------------------------------------------------------------------ATGCTGTGT-GTTAGAGA-----GAGACAGGGC---------------------------------------------------------------------------------------------------GAGAAAAA------------------------------------------ATGAAATTGTTT-----------------------TCTTGAT---GCTGGCTATAATAA-------------TAATACGATC--------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................TTGTTT-----------------------TCTTGAT---GCTGGC.........................................................	19	20	0.25	5	0	5	0	0	0	0
............................................................................................................................................................AGAGA-----GAGACAGGGC---------------------------------------------------------------------------------------------------GAGAAA........................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................A------------------------------------------ATGAAATTGTTT-----------------------TCTTGAT---GCTGGCT........................................................	27	20	0.05	1	1	0	0	0	0	0

droAna3

TATGA-AA--------TC--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------GAAAAACA------------------------------------------ACGAAGTTATGGCATTTCCGATGAAT-------------------CAGTTATATGGCAGCTATGGGATATAGTCGACCGATC---------CCG--------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................TT------------------GAAAAACA------------------------------------------ACGAAGTTATGGCATT............................................................................................	26	20	1.60	32	4	28	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCCGATGAAT-------------------CAGTTATATGGCAGC................................................	25	20	0.35	7	1	4	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGAAT-------------------CAGTTATATGGCAGCTAT.............................................	23	20	0.25	5	0	5	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTCCGATGAAT-------------------CAGTTATATGGCAGC................................................	27	20	0.25	5	1	3	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTCCGATGAAT-------------------CAGTTATATGGC...................................................	24	20	0.20	4	0	4	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GAAGTTATGGCATTTCCGATGAAT-------------------...............................................................	24	7	0.14	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................AAACA------------------------------------------ACGAAGTTATGGCATTTCCGT.......................................................................................	26	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGAAT-------------------CAGTTATATGGCAGC................................................	20	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTCCGATGAAT-------------------CAGTTATATGGCAGC................................................	26	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CATTTCCGATGAAT-------------------CAGTTATATGGC...................................................	26	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ACGAAGTTATGGCATTTCC.........................................................................................	19	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GGCATTTCCGATGAAT-------------------CAGTTATATGGC...................................................	28	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................AAAACA------------------------------------------ACGAAGTTATGGCAT.............................................................................................	21	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGCTATGGGATATAGT...................................	22	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTCCGATGAAT-------------------CAGTTATATGGCAG.................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATTTCCGATGAAT-------------------CAGTTATATGGC...................................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATGAAT-------------------CAGTTATATGGCAGC................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GGCATTTCCGATGAAT-------------------CAGTTATATGG....................................................	27	20	0.05	1	0	0	1	0	0	0

droBip1

AAATA-GC--------TCAT--AGCT----------------------CT------------------------------------------CATTTGAACTCTC----------------------------------------------------------------------------------------------------------TAACTCTAA-----------------------------------------------------------AAAA------------------------------------------CCAAAGTTATACCATTTCCGATCAAT-------------------CAGTTAGATAGCA-CTATTGGATATAGTCGGCCGAT---------TCCG--------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGTC-AA--------AG--TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAA------------------------------------AATACGTT------------------GAAAAACA------------------------------------------ACGAAAAAAAACT------TATCGAA-------------------CATTTGTATGGCAGCTATATGATATAGTCGTCCGATCCGGCCCGTTCCG--------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAATG-AC--------GT--TATCA-ATTAA-----------TTTCCAT----------------------------TAATTCTATATATATTTTTTGGTCTCTC--------------------------CTATGGCA-TCTATATTATAGAGTTATCCGATTTCGATAAAATTTAAAACGAAAT--TCAATATT---AGTTAGAAAA-CGCCATCTGGAAAAAATCAAG-TCGATCTG---------------AT------------------CAAAAACA------------------------------------------AGGGAGTGAGATTTTT---TTTTAAT-------------------TTCTCGTATATGAGCTATCCGATATAGTTGGCAGATCCGACCCGTTCCGACTTATATACTGC-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATAA-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCATTAT------------------------------------------------------TATATGTCGAAGAACT-AAAAAAAAAGAAAAACA------------------------------------------GCAAAGTTATAATTTTTCT------TAATTTATTTTTCTGAT-------------------TGTTCCTATAGTCGTCCGATCCGGCTCGTTCCG--------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTTAAAC--------GT-TTGCAA-AGAAAAACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATATTGTTAT--AGAAAA-CAA-----GAAAGAAATCAAACTTCGGCTT---------------GC------------------CGAAACCAAACGACTACATTTCGATTTCTATGGCTATATTACTAAAAACAATGAAGCTATGTCGT------------------------------------------------------------TCCGAC---------TTAT--------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTAT-AAAAAATAATCAAT--AATT----------------------TTATC-----------------------A----------------AATTGAATT-CGAAATTCTAAAAAATAGAAATATTTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGATATAATTGTCCGATCCGGCTGGA--------ATATAGTGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGGA-TA----AAACAAAT--AAAT----------------------AAATT-----------------------A----------------AATTAAATT-AGAATT--------------------------------------------------------------------------------------------------------------------------------------------------TC------------------AAAAAACA------------------------------------------CCGAAGCTAGAATTTGTTA------ACGATTTTTTTTCCGAT---CCTTCCTATGGCAGCTATAAGATATAGTTGTCCGATCCGGTCGGTTCCG--------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCTAT-GC--------GC--TTCAG-GATCAGCCCGTGGTGAACGCTGTCATCGATGGCACGGTAAACAC-------------------------------------------------------GCCTCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTCTGCT-------------------TATAATTGCCT-----------------------T----ATCGCCCGTGACGTAGCT-TGATAGGCCATA--CTGTTTAA---------ACTG--------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCTAT-GC--------GC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................TCAGCCCGTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAG-GATCAGCCCGTAGTGAACGC...................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GATCAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................G-GATCAGCCCGTAGTGAACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCGTAGTGAACGCCGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GTAGTGAACGCCGTCATCGA..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................GTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGCAG-GATCAGCCCGTAGTGAACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......C--------GC--TGCAG-GATCAGCCCGTAGTG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CGCCGTCATCGATGGCACGGA.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCGTAGTGAACGCCGTCATCG...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGCAG-GATCAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTAT-GC--------GC--TGCAG-GATCAGCCCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CGTCATCGATGGCACGGC.................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

AACGG-AT--------TC--ATGCG---------AGGAGTAAGAACCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCTAGGCAT----------------ACAAAGAAAAAAATGTTGAAAAATCTAAAAAAAAA-AA------------------------------------AACTAAAAACAAAAATGCAAAAAGAA------------------------------------------------------------GTTAAT---------TTAT--------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................TC--ATGCG---------AGGAGTAAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCTAT-GC--------TC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATTGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................AGTGAACGCCGTCATTGATG........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1
.....................................AGTGAACGCCGTCATTGATGGCACG...................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0
.......................AG-GATCAGCCCGTAGTGAACGC...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...AT-GC--------TC--TGCAG-GATCAGCCCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........................G-GATCAGCCCGTAGTGAACG....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..........................GATCAGCCCGTAGTGAACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...........................ATCAGCCCGTAGTGAACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
............................TCAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................................GTGAACGCCGTCATTGATGGCACGGA.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.............................CAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
......................................GTGAACGCCGTCATTGATG........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..TAT-GC--------TC--TGCAG-GATCAGCCCGTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...............................GCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0

droYak3

CCTAT-GC--------GC--TGCAG-GATCAGCCCGTGGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.CTAT-GC--------GC--TGCAG-GATCAGCCCGT............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.CTAT-GC--------GC--TGCAG-GATCAGCCCGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..........................GATCAGCCCGTGGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................ATCAGCCCGTGGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................C--TGCAG-GATCAGCCCGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CTAT-GC--------GC--TGCAG-GATCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GCCCGTGGTGAACGCCGTCATCGAC.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................GATCAGCCCGTGGTGAACGC...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................CGCCGTCATCGATGGCACGGAC................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
CCTAT-GC--------GC--TGCAG-GATCAGCCCGT............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................GATCAGCCCGTGGTGAACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................ATCAGCCCGTGGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................AGCCCGTGGTGAACGCCGTCA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CAGCCCGTGGTGAACGCCG.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..TAT-GC--------GC--TGCAG-GATCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................GATCAGCCCGTGGTGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCTAT-GC--------GC--TGCAG-GATCAGCCCGTAGTGAACGCCGTCATCGATGGCACGGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................AGCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	2	1	0
..........................GATCAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0	0
.....................................AGTGAACGCCGTCATCGA..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	1	1	0	0
.............................CAGCCCGTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........................GATCAGCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...AT-GC--------GC--TGCAG-GATCAGCCCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.CTAT-GC--------GC--TGCAG-GATCAGCCCGTAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
....................TGCAG-GATCAGCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
................................CCCGTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................ATCAGCCCGTAGTGAACGCC..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...AT-GC--------GC--TGCAG-GATCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................TAGTGAACGCCGTCATCGATGG.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..........................GATCAGCCCGTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................GAACGCCGTCATCGATGGCACGGAC................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.CTAT-GC--------GC--TGCAG-GATCAGCCCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
...................................GTAGTGAACGCCGTCATC............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
...............................GCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................G-GATCAGCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................ATCAGCCCGTAGTGAACGCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................GTAGTGAACGCCGTCATCGATG........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.CTAT-GC--------GC--TGCAG-GATCAGCCCGT............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
..............................................CGTCATCGATGGCACGGAC................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1	0

dvi_15379

scaffold_13047:3431214-3431364 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCCTGGCATTGCAGGACCAGCCCGTGGTCAATGCCGTCATCAGTGATCAGGTAAGTATCCAGTTTATTTCTTTATGTGCCTTGTCGTCTCTTTATAGTAGCCTATACTGTCTTTTAACTGGGTACAGGGTAAGAAAAATTGATCGATGTTGTCAGTTAGAATATCAAAATCTGGAAAAGCAAAGAAAAGAGTTGTGAATATCCCTAGAGACACATGACTGATAACGTAGTGGCAAAATTGGGCCGATTCCG ************************************************.......(((((....((((((..(((((((.((.........((((((.....))))))......)).)))))))....))))))(((((((.......))))))).............)))))..........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060659 Argentina_testes_total	SRR060683 160_testes_total	SRR1106730 embryo_16-30h	V047 embryo	M047 female body	M027 male body	SRR060682 9x140_0-2h_embryos_total	SRR1106727 larvae	V053 head	SRR1106726 embryo_14-16h	SRR060684 140x9_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060673 9_ovaries_total	SRR060657 140_testes_total	SRR060680 9xArg_testes_total	V116 male body
...........................................................................GTGCCTTGTCGTCGCATTAT............................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAATGCCGTCATCAGTGATCAGGAG......................................................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CATTGCAGGACCAGCCCGTGG................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TGGCAAAATTGGGCC.......	15	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGCAGGACCAGCCCGTGGT...............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGGTCAATGCCGTCTTCACC...............................................................................................................................................................................................................	20	3	6	0.33	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AAGTTGATCGATGTTGACGG................................................................................................	20	3	11	0.27	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TGGCAAAATTGGGCCA......	16	1	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GTAAGACAGATTGATCGAT........................................................................................................	19	2	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CATGACTGTTAACGTGGT.....................	18	2	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATGAGCGATGTTGTCAGT...............................................................................................	18	2	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATGGCAAAATTGGGCCG......	18	2	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATCTGGTAAAGCGAAGAT.................................................................	18	3	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
...................GCCCGTGGTGAATGCCGCCT....................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............AGGACCTGCCCGTGG................................................................................................................................................................................................................................	15	1	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................AGTCAATTTCTTTATGTGCTT..........................................................................................................................................................................	21	3	16	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................AAAGCAAAGTAAAGACTTG.........................................................	19	2	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................AAGGCCGCCATCAGAGATC...........................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................GTGCATTGTAGTCTCTTTTT............................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................GAAAAATTGATAGATCTT.....................................................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....GGTATTGCAGGATCAGCCC....................................................................................................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1