dvi_15353

CTCGTACAGAGCATGTGAGACGAGTTGCTTTCATCGTAGGGTTGTGGAGCCATTCACGTGTTTTCTGTTATTATTTACATATTTATTTGCCAAGTTTCATGTTGGTTGTAAACAACATGCTGGCGAAGTACCTGAAACTGACGTTAGTGAATATATATGTATGTATATTTTTTTTGTTTGATCTAATACTAAACGTAAAGAAATTACGTTTAATTATCTCGCTGTCTAGTCGTCTACTACAAAGCAACTAT ************************************************..(((((((................(((((((.((((.(((((....(((((((........))))))))))))..(((.......)))..........)))).))))))).((((...................))))...)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060665 9_females_carcasses_total	SRR060686 Argx9_0-2h_embryos_total	SRR060667 160_females_carcasses_total	M047 female body	M027 male body	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total
.............................................................................................................................................CGTTAGGGAATATGTATGTAT.........................................................................................	21	2	4	0.25	1	1	0	0	0	0	0	0
............................................................................................................TTAACAACATTCTGGCGA.............................................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0	0
...............................CATCATAGGGTTGTTGCG..........................................................................................................................................................................................................	18	3	20	0.15	3	0	0	0	0	1	1	1
..................................................................................................ATATTGGTCGTAAACACCAT.....................................................................................................................................	20	3	12	0.08	1	0	0	1	0	0	0	0
..............................................................................................................................AGTGCCTGAAATTGACGAT..........................................................................................................	19	3	17	0.06	1	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:3176800-3177050 +	dvi_15353	GAGCATGTCTCGTACACTCTGCTCAACGAAAGTAGCATCCCAACACCTCGGTAAGTGCACA----------------------------------AAAGACAATAATA---------------AATGTAT---AAATAA-----------------------------------------------ACGGTTCAAAGTACAACCAACAT------TTGTTGTA-CGACCGC------------TTCA---------TGGACTTTGAC--------TGCAATCACTTATA--TATACATACATATAAAAAAAACAAACTAGATTATGATTTGCATTTC-TTTAATGCAAAT--TA----------ATAGAGCGACAG----------------------ATCAGCAGA-------------------------------TGATGTTT----------------------CGTTGATA
droMoj3	scaffold_6540:20218743-20219007 +		GAACATGTTTCATATACGCTGTTGAACGAAAGTAACATCCCGACGCCTCGGTAAGTGCATA-------------------------GC--A----AATACATATT-TA---------------AATATAT---AAATAA-----------TAT---------------------------AAAGT-ACGGTACAAAGTGCAAGCTAA---------TGTTACGGCAACTGT------------TTCA---------CGGACTTTGACTTTTGCATTCCAATCATTAATATATATACATTTGTATATAA------AACGAGATTACGATTTGCATTTAACTTAATGTAAATATTAG------TAAATAGACGGAAAG----------------------CTCGTGAGATAT----------------------------------------------------------TGATAATA
droGri2	scaffold_15074:7550874-7551098 +		GAACACGTCTCATACACCCTGCTCAACGAAAGCAACATCCCAACGCCTCGGTAAGTAAATATGTATCTTTATCTATTGTATACATAAC---------------------------------------------------------------------------------------------AAGTGCCAGTCCAAAGTTCAACAAAAGAGGCGACT--ACGCA-TCTCTG--------------------------TGCACTTTGGC--------CAC--TATT-------------------TAATAAAAGCAAA------------------------TAATGCAAGTATTGC------TAAACAGAGTGACAG----------------------CCCATGAGATGA-----------------------CG--AT-AAGCAGCA----------------------CTGATA
droWil2	scf2_1100000004902:6413944-6413999 +		GAGCATGTCTCGTATACCCTGCTCAATGAAAGTGACATACCAACACCACGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:22992398-22992541 -		GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAA------------------------------T--GGACAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTCCAAAGTGCAAAAAACGCGCCGCGTTGTCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGGACTTTAGCCAGA--------------GT----AA----------------C
droPer2	scaffold_3:5769169-5769312 -		GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAA------------------------------T--GGACAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTCCAAAGTGCAAACAACGCGCCGCGTTGTCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGGACTTTAGCCAGA--------------GT----AA----------------C
droAna3	scaffold_13340:3515489-3515696 +		GAACATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCCACACCACGGTAAGCA------------------------------TCAGGACAA------GAAACTAAAAACAAGAAGCT-AAT---ATTAAA------TAAATACACCA-----TGGCTTCCCAGC-------T-ACAAAGTTGCAGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGCA-GCATTGA------------TTCATTTTCAGCTTGGACTTTGGC--------TCAACTTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------T
droBip1	scf7180000396712:837917-838204 -		GAACATGTCTCCTACAGTCTCCTCAACGAAAGCAAAATCCCAACACCACGGTAAGTAAATC----------------------------------AAAACAAGACCCT---------------ACTATCATCAAA------GGAATCCATCCATTAGTAGCCTCACAGC-------T-ACATAGTTGCAGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGCA-GCATTGA------------TTCATTTTTATTTTGGACTTTGGA--------TGAACTTATTA----------------------------------------------------GTTGTTGTATTAATTAG------TAAACAAACGAAAGA----------------------TTGATAAGATTTTTTAAATACATATACCATTTGATCG--ATGAAGTGTCA----------------------AGGGTC
droKik1	scf7180000302639:1800929-1801068 -		GAACATGTTTCCTACACTCTCCTCAACGAAGGCAAAATCCCCACACCGCGGTGAGTAAACC----------------------------------AATCCCATTCGGA--------------AATTATCA---AAATCGCG-GAAAACAAC-AACA-------------AATCGGTTGGCAAAGTTTCAGTTCAAAGTCCAAACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454106:2424697-2424756 -		GAGCATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491212:1035362-1035417 -		GAGCATGTTTCCTATAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779210:37058-37142 -		GAGCATGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAGCC----------------------------------CAAACCAACCGGA---------------ATTATCA---AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302402:7468727-7469054 +		GAGCACGTCTCCTACAGTCTCCTGAACGAGAGCAAGATCCCCACACCTCGGTGAGTAAGTC----------------------------------AAAACCGACCGGA---------------ATTATCA---A--T----------CGACCCACA-------------A-TCAGGC-GCAAAGTGGCCGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGTT-GCGTTGACGGCTTCTTCGGTTTATTTTCGCTTCGGACTTTGTC--------TGAACTTAATA-----TTTG--------------------------------------------------CATTAATTAGCTGGGGTAAACAAACCATAGAAACGCAGCCACCGATTATAAGGGCGATAACAAGTTCTATA--C---TACACTTTGATCAGCATAGAGTGACAAGGGTCAGTGACGTGGGTTTTGATAAGA
droTak1	scf7180000414009:55673-55780 -		GAGCACGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAACC----------------------------------CAAATCAACCGGA---------------ATTATCA---AAATCGCGAGGAAACAACCAACA-------------A-TCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409467:714844-714951 -		GAGCACGTTTCATACAGTCTCCTTAACGAGAGCAAAATTCCAACACCTCGGTAAGTAAATA-------------------------AC--A----AAAACCAACCGGA---------------ATTATCA---AAATCGGCGGTGA-------------------------------------------------AATAAAACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:4765445-4765546 +		GAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAACC----------------------------------C-----AATCGGA---------------ATTATCA---AAATCGCGGGCAAACAACCAACA-------------A-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droSim2	3r:16248054-16248113 -		GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_0:17114231-17114290 -		GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:8809626-8809685 +		GAACACGTTTCTTACAGTCTCCTGAATGAGGCCAAGATCCCAACACCCCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4770:16838111-16838212 -		GAACACGTTTCATACAGTCTCCTTAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAACC----------------------------------C-----AATCGGA---------------ATTATCA---AAATCGCGGGCAAACAACCAACA-------------A-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GAGCATGTCTCGTACACTCTGCTCAACGAAAGTAGCATCCCAACACCTCGGTAAGTGCACA----------------------------------AAAGACAATAATA---------------AATGTAT---AAATAA-----------------------------------------------ACGGTTCAAAGTACAACCAACAT------TTGTTGTA-CGACCGC------------TTCA---------TGGACTTTGAC--------TGCAATCACTTATA--TATACATACATATAAAAAAAACAAACTAGATTATGATTTGCATTTC-TTTAATGCAAAT--TA----------ATAGAGCGACAG----------------------ATCAGCAGA-------------------------------TGATGTTT----------------------CGTTGATA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................GAAAGTAGCATCCCAACACCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTCTCGTACACTCTGCTCAACGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CAACGAAAGTAGCATCCCAACACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTGCTCAACGAAAGTAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTGCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGTAGCATCCCAACACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGA-------------------------------TGATGTTT----------------------CGTT....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTGCTCAACGAAAGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTGCTCAACGAAAGTAGCATCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTACACTCTGCTCAACGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CACTCTGCTCAACGAAAGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAACATGTTTCATATACGCTGTTGAACGAAAGTAACATCCCGACGCCTCGGTAAGTGCATA-------------------------GC--A----AATACATATT-TA---------------AATATAT---AAATAA-----------TAT---------------------------AAAGT-ACGGTACAAAGTGCAAGCTAA---------TGTTACGGCAACTGT------------TTCA---------CGGACTTTGACTTTTGCATTCCAATCATTAATATATATACATTTGTATATAA------AACGAGATTACGATTTGCATTTAACTTAATGTAAATATTAG------TAAATAGACGGAAAG----------------------CTCGTGAGATAT----------------------------------------------------------TGATAATA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................CGCTGTTGAACGAAAGTAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......GTTTCATATACGCTGTTGAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........TTCATATACGCTGTTGAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........TTCATATACGCTGTTGAACGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................GTTGAACGAAAGTAACATCCCGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

GAACACGTCTCATACACCCTGCTCAACGAAAGCAACATCCCAACGCCTCGGTAAGTAAATATGTATCTTTATCTATTGTATACATAAC---------------------------------------------------------------------------------------------AAGTGCCAGTCCAAAGTTCAACAAAAGAGGCGACT--ACGCA-TCTCTG--------------------------TGCACTTTGGC--------CAC--TATT-------------------TAATAAAAGCAAA------------------------TAATGCAAGTATTGC------TAAACAGAGTGACAG----------------------CCCATGAGATGA-----------------------CG--AT-AAGCAGCA----------------------CTGATA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GAGCATGTCTCGTATACCCTGCTCAATGAAAGTGACATACCAACACCACGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............ACCCTGCTCAATGAAAGTGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
...................TGCTCAATGAAAGTGACATACCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........GTATACCCTGCTCAATGAAAGTGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.............ATACCCTGCTCAATGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..............................AGTGACATACCAACACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..........................TGAAAGTGACATACCAACACCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.AGCATGTCTCGTATACCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

dp5

GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAA------------------------------T--GGACAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTCCAAAGTGCAAAAAACGCGCCGCGTTGTCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGGACTTTAGCCAGA--------------GT----AA----------------C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......GTCTCGTACACTCTCCTCAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	3	0
.AACATGTCTCGTACACTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................TCAACGAAAGTGGAATCCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........CTCGTACACTCTCCTCAACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGGACTTTAGC...........................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.............................................................................................CAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTCC...........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................TGGAATCCCAACACCGCGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..ACATGTCTCGTACACTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTCCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........CTCGTACACTCTCCTCAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATA--T---TGGACTTTAGCCAGA--------------GT----...................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................GTGGAATCCCAACACCGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GTCTCGTACACTCTCCTCAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............ACACTCTCCTCAACGAAAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCCAAAGTGCAAAAAACGCGC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAAAGTGCAAAAAACGCGCC........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................CAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTC............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ACATGTCTCGTACACTCTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................AGTGGAATCCCAACACCGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................AAAGTGGAATCCCAACACCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GAAAGTGGAATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATCGGTCCAAAGTGCAAAAA...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CCTCAACGAAAGTGGAATCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCGCCGCGTTGTCGC-----------------------------------TG.........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTCCTCAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAAAAAACGCGCCGCGTTGT.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............ACTCTCCTCAACGAAAGTGGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TAAT---------------------------------------------------------------------------CAAAGTATCGGTCCAAA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TCTCCTCAACGAAAGTGGAATCCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATA--T---TGGACTTTAGCCAGA--------------.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....ATGTCTCGTACACTCTCCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGG...................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CGAAAGTGGAATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TCAACGAAAGTGGAATCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................T---------------------------------------------------------------------------CAAAGTATCGGTCCAAAGTG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AAACGCGCCGCGTTGTCGC-----------------------------------TG.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TACACTCTCCTCAACGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................CACCGCGGTAAGAA------------------------------T--GGACAC----........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGG...................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................AAAGTGGAATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAA------------------------------T--GGACAC----TAAT---------------------------------------------------------------------------CAAAGTATCGGTCCAAAGTGCAAACAACGCGCCGCGTTGTCGC-----------------------------------TGAC---------------------------------------------------------------------------------------------------------------------------------------------------GCTTTATA--T---TGGACTTTAGCCAGA--------------GT----AA----------------C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....ATGTCTCGTACACTCTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
.AACATGTCTCGTACACTCTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...........GTACACTCTCCTCAACGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATA--T---TGGACTTTAGCCAGA--------------.........................	21	1	1.00	1	0	0	0	0	1	0
........CTCGTACACTCTCCTCAACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................GTGGAATCCCAACACCGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................CTCTCCTCAACGAAAGTGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
GAACATGTCTCGTACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....ATGTCTCGTACACTCTCCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droAna3

GAACATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCCACACCACGGTAAGCA------------------------------TCAGGACAA------GAAACTAAAAACAAGAAGCT-AAT---ATTAAA------TAAATACACCA-----TGGCTTCCCAGC-------T-ACAAAGTTGCAGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGCA-GCATTGA------------TTCATTTTCAGCTTGGACTTTGGC--------TCAACTTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................GAGCAAAATCCCCACACCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0
............TACAGTCTCCTCAACGAGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.............ACAGTCTCCTCAACGAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.AACATGTCTCCTACAGTCTCCTCAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..ACATGTCTCCTACAGTCTCCTCAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............ACAGTCTCCTCAACGAGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................AGAGCAAAATCCCCACACCACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........CTCCTACAGTCTCCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................GTTCAACGAAAGTGCCGCGTTGTCGCA-GC..........................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.AACATGTCTCCTACAGTCTCCTCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
GAACATGTCTCCTACAGTCTCCTCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

GAACATGTCTCCTACAGTCTCCTCAACGAAAGCAAAATCCCAACACCACGGTAAGTAAATC----------------------------------AAAACAAGACCCT---------------ACTATCATCAAA------GGAATCCATCCATTAGTAGCCTCACAGC-------T-ACATAGTTGCAGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGCA-GCATTGA------------TTCATTTTTATTTTGGACTTTGGA--------TGAACTTATTA----------------------------------------------------GTTGTTGTATTAATTAG------TAAACAAACGAAAGA----------------------TTGATAAGATTTTTTAAATACATATACCATTTGATCG--ATGAAGTGTCA----------------------AGGGTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAACATGTTTCCTACACTCTCCTCAACGAAGGCAAAATCCCCACACCGCGGTGAGTAAACC----------------------------------AATCCCATTCGGA--------------AATTATCA---AAATCGCG-GAAAACAAC-AACA-------------AATCGGTTGGCAAAGTTTCAGTTCAAAGTCCAAACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGCATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGCATGTTTCCTATAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAGCATGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAGCC----------------------------------CAAACCAACCGGA---------------ATTATCA---AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGCACGTCTCCTACAGTCTCCTGAACGAGAGCAAGATCCCCACACCTCGGTGAGTAAGTC----------------------------------AAAACCGACCGGA---------------ATTATCA---A--T----------CGACCCACA-------------A-TCAGGC-GCAAAGTGGCCGTCCAAAGTTCAACGAAAGTGCCGCGTTGTCGTT-GCGTTGACGGCTTCTTCGGTTTATTTTCGCTTCGGACTTTGTC--------TGAACTTAATA-----TTTG--------------------------------------------------CATTAATTAGCTGGGGTAAACAAACCATAGAAACGCAGCCACCGATTATAAGGGCGATAACAAGTTCTATA--C---TACACTTTGATCAGCATAGAGTGACAAGGGTCAGTGACGTGGGTTTTGATAAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGCACGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAACC----------------------------------CAAATCAACCGGA---------------ATTATCA---AAATCGCGAGGAAACAACCAACA-------------A-TCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGCACGTTTCATACAGTCTCCTTAACGAGAGCAAAATTCCAACACCTCGGTAAGTAAATA-------------------------AC--A----AAAACCAACCGGA---------------ATTATCA---AAATCGGCGGTGA-------------------------------------------------AATAAAACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAACC----------------------------------C-----AATCGGA---------------ATTATCA---AAATCGCGGGCAAACAACCAACA-------------A-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............TACAGTCTGCTCAATGAGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.............ACAGTCTGCTCAATGAGGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0
...........CTACAGTCTGCTCAATGAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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..................................................GTGAGTAAACC----------------------------------C-----AATCGGA---------------ATTA.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....CGTTTCCTACAGTCTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................ATTATCA---AAATCGCGGGCAAA.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSim2

GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................TCAATGAGGCCAAGATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........TCCTACAGTCTCCTCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTCCTACAGTCTCCTCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................TCAATGAGGCCAAGATCCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.AACACGTTTCCTACAGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................GGCCAAGATCCCAACACCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...........................GAGGCCAAGATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................ATGAGGCCAAGATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
......................TCAATGAGGCCAAGATCCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droYak3

GAACACGTTTCTTACAGTCTCCTGAATGAGGCCAAGATCCCAACACCCCGGTGAGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........CTTACAGTCTCCTGAATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................GGCCAAGATCCCAACACCCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.AACACGTTTCTTACAGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...CACGTTTCTTACAGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
GAACACGTTTCTTACAGTCTCCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GCCAAGATCCCAACACCCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GAACACGTTTCATACAGTCTCCTTAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAACC----------------------------------C-----AATCGGA---------------ATTATCA---AAATCGCGGGCAAACAACCAACA-------------A-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................GGCCAAGATCCCAACACCTCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0	0
...........................GAGGCCAAGATCCCAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................A---------------ATTATCA---AAATCGCGGGCAA..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................TGAGGCCAAGATCCCAACACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................GCCAAGATCCCAACACCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................CAAGATCCCAACACCTCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................TGAGGCCAAGATCCCAACACCTCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
......GTTTCATACAGTCTCCTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0

dvi_15353

scaffold_13047:3176850-3177000 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAGCATGTCTCGTACACTCTGCTCAACGAAAGTAGCATCCCAACACCTCGGTAAGTGCACAAAAGACAATAATAAATGTATAAATAAACGGTTCAAAGTACAACCAACATTTGTTGTACGACCGCTTCATGGACTTTGACTGCAATCACTTATATATACATACATATAAAAAAAACAAACTAGATTATGATTTGCATTTCTTTAATGCAAATTAATAGAGCGACAGATCAGCAGATGATGTTTCGTTGATA ************************************************..(((((((................(((((((.((((.(((((....(((((((........))))))))))))..(((.......)))..........)))).))))))).((((...................))))...)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060667 160_females_carcasses_total	M047 female body	M028 head	SRR060664 9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060665 9_females_carcasses_total	SRR060671 9x160_males_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060683 160_testes_total	SRR1106729 mixed whole adult body	V047 embryo	SRR060686 Argx9_0-2h_embryos_total	SRR060675 140x9_ovaries_total	SRR1106727 larvae	V053 head
....ATGTCTCATACACTCTGCT....................................................................................................................................................................................................................................	19	1	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................GAAAGTAGCATCCCAACACCTCG.........................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTCTCGTACACTCTGCTCAACGAA.............................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCA......................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCATC....................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................CAACGAAAGTAGCATCCCAACACCT...........................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGCATGTCTCATACACTCTGCT....................................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGC.......................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCCAACA..............................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCC..................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................TCTGCTCAACGAAAGTAGCA......................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTGCTCA..................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGTAGCATCCCAACACCT...........................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATCAGCAGATGATGTTTCGTT....	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTGCTCAACGAAAGTAGC.......................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................CTGCTCAACGAAAGTAGCATCCC..................................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTACACTCTGCTCAACGAA.............................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............CACTCTGCTCAACGAAAGTAGC.......................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................ATGGACTTTGACTCC............................................................................................................	15	1	14	0.14	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..............................AGTAGCCTTCCACCACCTC..........................................................................................................................................................................................................	19	3	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GTACGACCGCTTGATAGAT.....................................................................................................................	19	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................TATATACACACATGTAAAAAAA.............................................................................	22	2	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CATTGCCTGGAATCACTTAT..................................................................................................	20	3	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................CAGATCAGCAGAAGATGGAT........	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................GACCGGTTCATGGGCT....................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................ACAGATAAGCAGATAATG...........	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0