dvi_15241

exon [dvir_GLEANR_9077:1]; CDS [Dvir\GJ23748-cds]; CDS [Dvir\GJ23748-cds]; exon [dvir_GLEANR_9077:2]; intron [Dvir\GJ23748-in]

TTGTTCCTTCGTAGTTTTTGTTGCGTGACGTATTTCAATCCGTTGTACAACATTCGTCTTCTTGAAAAACAGTCGGGTTTAGTTGTGGACGTTCACAACGACGTTGGTAAAGGAGGAACGTCGTTCCTGTTGTTGTTCTCGTTGTTTGTTAGCAACTTACACTATATTGTTT ************************************************(((((.(((....(((.((((.......(((((......))))))))))))....))).))..)))..****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060667 160_females_carcasses_total	V053 head
.............................................TACAAGTTTCGTCTTCTTGA...........................................................................................................	20	2	2	0.50	1	1	0
.....CCTTGATAGTTTTTGTTGGGT..................................................................................................................................................	21	3	9	0.11	1	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:2154735-2154906 +	dvi_15241	A-----ACAAG-GAAGCATCAAAAACAA---CG---------C---ACT--------------------------------------GCATAAAG-----TTAGGCAACATGTTGTAAGCAGAAGAACTTTTTGTCAGCCCAAATCAACACCTGCAAGTGTTGCTG--------------------------------------------------------------------CAACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAGCAA---------GGA-------------CAAC------------------AACAA------------GAGCAACAAAC----AATCGTTGAATGTGATATA--------AC-------------AAA
droMoj3	scaffold_6540:22746022-22746196 -		A-----AGAGA-TAAGCAACATAAACAA---TG------------TACAGTCA-------------------------------------------------ATGCAACATGTTGCTAGCAAAAGAAG---TTGTCAGTCAACAGCGGCAATGGCAAATGTTGCTG--------------------------------------------------------------------CAACAAGTTCAACCTGG------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACGG-------------CAGC------------------AGCAG------------CAACAACAAAC----AATCAATGAATGTGATATA--------AC-------------AAG
droGri2	scaffold_14906:8991314-8991482 +		A-----GCAGC-ATAGCAAGAAAAGGAA---CG---------C---AGAGCTC-------------------------------------------------CGGCAACATGTTGCTCGCAGTAGAAC---TTGTCAGCCAAAAGCGACGCATGCGAGTGTTGCAG--------------------------------------------------------------------CAACCATTAATACTGGG------------------------------------------------------------------------------------------------------------------CAGCAGCAG---------CAA--------C--AACAAC------------------AACAA------------CAACAACAAAC----AATCATTGAATGTGATATA--------AC-------------AAA
droWil2	scf2_1100000004615:74-252 +		A-----ACAAGTGCAGCAGCAA---CAACAACTG----------CAACA--------------------------------------ACTGCAG---------------------------------------------------------CTACAATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--ACAGCAACAAC---------------------------AACA------------------------------ACAGCAAGAAAAGCCAGAGCAACAACAGCAGGAGCCACAG---CAA----------------------------------CATCAGCAGCAGCAACAACAACTG---CAGCAACTGCA-----------------GCTACAATTGATGCA--------AC--------------AA
dp5	XL_group1a:5439665-5439816 +		A-----ACAAAAGCAGCAAAAG---CAACAGCAG----------CAGCA--------------------------------------ACAGCAG---GTGCA-------------------GC-----------------------------------------AGCCACAAAATCAGCAGCACCAG-------------------------------------------------------------CAA------------------CAGCA------------------------------------------------------------CC---AGCAACAGCACCAGCAACAGCACCA----------------------------------------GCAACAGCACCAGCAACAGCAG---CA----------------GC----AACAGCAGCATGTGCAGCA--------GC--------------AA
droPer2	scaffold_6:2802498-2802627 +		G-----AAGGCA-ATGCAACAA------------ATTGAAGGTGCAACATGCA-------------------------------------------------------------GC---------------------------AGCCTCACACACAACTGTTGCAG--------------------------------------------------------------------------------------------------------------------------------------------GCAACAACGCT---------------------------------------------GGGCAACAGCAG---------CAG-------------CAAC------------------AGGAA------------GAACAACAAAC----AATCATTGAATGTGATATA--------AG-------------AAA
droAna3	scaffold_13337:19297502-19297667 -		T-----ACAAGTGCAACAGCAA---CTTCAACTC----------CAACA--------------------------------------GCAACAACAATTACA-------------------AC-----------------------------------------AGAAACTAGAACAGCAACAGCAA----------------------------------------------------------------------------------------------------------CTTAAATT---------------ACA---------------AC---AGCAGCTAGAACAGCAACAGCAA---TTACAACAG---------CAG-------------CTAGAACAACAACAACAGCTACAACAG---------------------------CATCACCAAATACAACATG-------------------------A
droBip1	scf7180000396360:488601-488746 -		A-----ACAACAGCAGCAGCAT---CAACAACAG----------CAGCA--------------------------------------TCAACAAC--------A----------------------------------------------------------------------GCAACAGCATCAG-------------------------------------------------------------CAA------------------CTGCA------------------------------------------------------------GC---AGCATCAGCAACAGCAACAGCATCA----------------------------------------ACATCAGCAGCATCAACAACAG---CAGCAACATCA-------AC-----AACATCGGGAATGTTTTC--------AA-------------CAA
droKik1	scf7180000302621:77407-77558 +		A-----GCAGCAGCAGCAGCAG---TAGCAGCGG----------CAGCAAC-AATAACACACCCAACGGTGCG---------------------------------------------------------------------------------------------------------CAGCAGCAG--------------------------------------------------CATTTGCAG--CAGCAGCAGCAGC---------------------------AACAACG---CGTTGCTAGCAGCAACCAG----------------------------------------------------------------------------------------------------CAACAGTTG---CAGCAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC
droFic1	scf7180000454050:534284-534450 -		A-----ACAACA-ACACACCAAA--C-----------------------------------------GGTGCGCAGCAGCAGCAGCAGCAACATC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACACCACCAGCAGCATCACCAACAGCAACGTGTTGTTGCCAGCAGCAACCAG------------------------------------------------CAACAGCTG---------CAA-------------CAAC------------------AACAACAACAACAACAACA---------GCAG---------------CATGATAATGGACC-------------AAC
droEle1	scf7180000491214:2531557-2531711 +		A-----ACAG-AGCAGCAGCAG---CAACAGCAG----------CAGCA--------------------------------------GCAGCAGCCGATGCA-------------------AC-----------------------------------------AGAAGCAACATCAG------CAA-------------------------------------------------------------CAG------------------CAACA------------------------------------------------------------CC---AGCAGTTGCAACATTAACAACCTCCAAAGCAGCAG---------CAG-------------CAGC------------------AGTAG------------CAGCAAC-CAC----AGATGTTGCTGGTGGCAAT--------AG-------------CAA
droRho1	scf7180000779699:8297-8468 +		T-----GCAACAGCAGCAGCAG---CAGCAACAC----------CAGCA--------------------------------------GCAGCAA---TTGCTAGGAAACATGTCGCAAACGG--------------------------------------------------------------CGGCTTTGCCACCGCTCAGCAGTTTGCCACTGCAAGTGGTGCACAATCTGCCACATTTGCTGTCCGG------------------------------------------------------------------------------------------------------------------TAACGGCAG---------CAA-------------CACG------------------GGCAA------------------------------TGCCAACAGCAACACC--------AG-------------CAA
droBia1	scf7180000302428:1880677-1880812 +		GCAGCAACAG---AAACTACGAAAGCAA---CAG----------CAACAGC-----------------------------------------TAC--------A----------------------------------------------------------------------ACAGCAACAGCAG-------------------------------------------------------------CAA------------------GAGCA------------------------------------------------------------AC---AGCAACATCAGCAGCAACAGCAACT----------------------------------------AAAACGGCAGCAACTACAACAG---CAGCAG---CA---AC-AGC----AAAGGTTAGAAGTG-------------------------------
droTak1	scf7180000413903:59470-59660 +		A-----ACAGCAGCAGCAGCAA---CAACACACC----------CAAC-------------------GGTGCGCAGCAGCAGCAGCAGCAACATCAGCAGCA-------------------GC-----------------------------------------AGCAGCAACATCATCAGCAGCAG-------------------------------------------------------------CAG------------------CATCA---------CCAGCAGCAACGGGTTGTTGCCAGCAGCAACCAG------------------------------------------------CAA----------------------------------CAACAGCAGCTGCAGCAGCAACAG---CAACAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC
droEug1	scf7180000409692:153160-153304 +		A-----CAAAC-ACAGAAGCAAAAGCAA---CAAATTAAATGCTCGACAATTA-------------------------------------------------GGGCCACATGCTGCC------AGAAG---TTGTCAGCAGAGAGAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGATGTCGAAGGAGA------------------------------------------------------------A---------GAA-------------CAAC------------------AACAA------------CAGCAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA
dm3	chr3R:21222987-21223109 -		A-----AG--------CAACAA------------ATTAAATGCTCGACAATTA-------------------------------------------------GGGTCAAATGCTGCC------AGAAG---TTGTCAGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT------------------------------------------------C--------------------TGTGGCAACAACACTAG------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA
droSim2	x:11980741-11980921 -		A-----GCAGCAGCAGCAGCAA---CAACACCAT----------CAGCA--------------------------------------GCAGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAACCAGCAACAGCAGCAACAGCAGC---TGCAGCAACAGCAGCAG---------------------------CAG-------------CAACAACAGCAGCAGCAGCAGCAGCAG---CAGCAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC
droSec2	scaffold_21:379121-379248 -		A-----GCAGCAGCAGCAACAA---CAACACCAT----------CAGCA--------------------------------------GCAGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAACCAG------------------------------------------------C--------------------A--------------------------------------------GCAGCAGCA---------GCAG---------------CATGATAATGGACCAACGTCCCATCATTTG
droYak3	3R:25267910-25268049 +		C-----ACAAGCACAGAAGCAAAAGCAA---CAAATTAAATGCTCGCCAATTA-------------------------------------------------GGGCCACATGCAGCC------AGAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCG------------------------------------------------A--------------------AGCCGCAACGCAGCTAC------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA
droEre2	scaffold_4820:6822299-6822431 +		A-----CAAA-AGTAAAAGCAA---CAA------ATTAAATGCTCGACAATTA-------------------------------------------------GGGCCACATGCGGCA------AGAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG------------------------------------------------C--------------------CGCCGCAACGCAGCTAG------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

A-----ACAAG-GAAGCATCAAAAACAA---CG---------C---ACT--------------------------------------GCATAAAG-----TTAGGCAACATGTTGTAAGCAGAAGAACTTTTTGTCAGCCCAAATCAACACCTGCAAGTGTTGCTG--------------------------------------------------------------------CAACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAGCAA---------GGA-------------CAAC------------------AACAA------------GAGCAACAAAC----AATCGTTGAATGTGATATA--------AC-------------AAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................AACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAGC..............................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GCAGAAGAACTTTTTGTCAG........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------GGA-------------CAAC------------------AACAA------------GA..........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGCATCAAAAACAA---CG---------C---ACT--------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAG...............................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTTTTGTCAGCCCAAATC................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................CT--------------------------------------GCATAAAG-----TTAGGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAGCAA---------GGA-------------CAAC------------------.............................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGTAAGCAGAAGAACTTTTTGT...........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................AACCATTTCCTCC---------------------------------------------------------------------------------------------------------------------TTGCAGCAA---------G..................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................A---CG---------C---ACT--------------------------------------GCATAAAG-----TTAGGC........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAC----AATCGTTGAATGT................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GTTGTAAGCAGAAGAACTTTT..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TAGGCAACATGTTGTAAGCAGAA......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GTAAGCAGAAGAACTTTTT.............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ACT--------------------------------------GCATAAAG-----TTAGGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAAC----AATCGTTGAAT..................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ACAAG-GAAGCATCAAAAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................AACAA---CG---------C---ACT--------------------------------------GCATAAAG-----..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

A-----AGAGA-TAAGCAACATAAACAA---TG------------TACAGTCA-------------------------------------------------ATGCAACATGTTGCTAGCAAAAGAAG---TTGTCAGTCAACAGCGGCAATGGCAAATGTTGCTG--------------------------------------------------------------------CAACAAGTTCAACCTGG------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACGG-------------CAGC------------------AGCAG------------CAACAACAAAC----AATCAATGAATGTGATATA--------AC-------------AAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................AGAAG---TTGTCAGTCAACAGCGGC.............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1
..............................................................................................................TGTTGCTAGCAAAAGAAG---TTGTCAGT.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................AGCAAAAGAAG---TTGTCAGTC......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................GCTAGCAAAAGAAG---TTGTCAGTC......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................GTTGCTAGCAAAAGAAG---TTGTCAG........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................GCAAATGTTGCTG--------------------------------------------------------------------CAACAAGTTCAACC..........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GTTCAACCTGG------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGC........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AAAAGAAG---TTGTCAGTCAACAGCGGC.............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................AGCAACGG-------------CAGC------------------AGCAG------------CAACA.......................................................	22	14	0.14	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACGG-------------CAGC------------------AG...........................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

A-----GCAGC-ATAGCAAGAAAAGGAA---CG---------C---AGAGCTC-------------------------------------------------CGGCAACATGTTGCTCGCAGTAGAAC---TTGTCAGCCAAAAGCGACGCATGCGAGTGTTGCAG--------------------------------------------------------------------CAACCATTAATACTGGG------------------------------------------------------------------------------------------------------------------CAGCAGCAG---------CAA--------C--AACAAC------------------AACAA------------CAACAACAAAC----AATCATTGAATGTGATATA--------AC-------------AAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................AAAAGCGACGCATGCGAGTG..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
....................................................C-------------------------------------------------CGGCAACATGTTGCTCGCAGTA......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

droWil2

A-----ACAAGTGCAGCAGCAA---CAACAACTG----------CAACA--------------------------------------ACTGCAG---------------------------------------------------------CTACAATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--ACAGCAACAAC---------------------------AACA------------------------------ACAGCAAGAAAAGCCAGAGCAACAACAGCAGGAGCCACAG---CAA----------------------------------CATCAGCAGCAGCAACAACAACTG---CAGCAACTGCA-----------------GCTACAATTGATGCA--------AC--------------AA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGG................................................................................................................................................	21	13	10.08	131	0	56	1	74	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGA...............................................................................................................................................	22	13	4.77	62	0	55	0	7	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGC...........................................................................................................................................................................................................................................................	24	13	2.69	35	0	35	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAG..............................................................................................................................................	23	13	2.31	30	0	27	2	1	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAG.................................................................................................................................................	20	13	1.62	21	0	10	0	11	0
A-----ACAAGTGCAGCAGCAA---CAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	1.33	8	0	8	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................	24	13	1.15	15	0	7	0	7	1
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................	26	13	1.00	13	0	12	0	1	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--........................................................................................................................................................................................................................................................	25	13	0.69	9	0	9	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCC............................................................................................................................................	25	13	0.69	9	0	8	0	1	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGC.............................................................................................................................................	21	13	0.54	7	0	4	0	3	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--A.......................................................................................................................................................................................................................................................	26	13	0.54	7	0	7	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................	27	13	0.54	7	0	7	0	0	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAG............................................................................................................................................................................................................................................................	23	13	0.54	7	0	7	0	0	0
A-----ACAAGTGCAGCAGCAA---CAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.50	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................	23	13	0.46	6	0	6	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG---.....................................................................................................................................	23	13	0.38	5	0	5	0	0	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGC...........................................................................................................................................................................................................................................................	23	13	0.38	5	0	5	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCA..................................................................................................................................................	19	14	0.36	5	0	1	0	3	1
A-----ACAAGTGCAGCAGCAA---CAACAACTG----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.33	2	0	2	0	0	0
A-----ACAAGTGCAGCAGCAA---CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0
A-----ACAAGTGCAGCAGCAA---CAACAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.33	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................	25	13	0.31	4	0	4	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGC...................................................................................................................................................	18	14	0.29	4	0	1	0	3	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCA.............................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTGCAG............................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAGCCACAG---CAA----------------------------------CATC............................................................................................	24	13	0.23	3	0	3	0	0	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--A.......................................................................................................................................................................................................................................................	25	13	0.23	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCC............................................................................................................................................	22	13	0.23	3	0	2	0	1	0
A-----ACAAGTGCAGCAGCAA---CAACAACTG----------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAACAACAACTG---.....................................................................	23	6	0.17	1	0	1	0	0	0
......ACAAGTGCAGCAGCAA---CAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0
......ACAAGTGCAGCAGCAA---CAACAACTG----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
A-----ACAAGTGCAGCAGCAA---CAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AGCCACAG---CAA----------------------------------CATCAGCAGCAGCAAC................................................................................	27	12	0.17	2	0	1	0	1	0
..............................................................................................................................................................TGATGCAA--------------------------------------------------------------------CAACAATTGCAGC...........................................................................................................................................................................................................................................................	21	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAG.................................................................................................................................................	23	13	0.15	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAGCCACAG---CAA----------------------------------CA..............................................................................................	22	13	0.15	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAGG................................................................................................................................................	20	13	0.15	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGGAGCCACAG---.....................................................................................................................................	21	13	0.15	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAGGAG..............................................................................................................................................	22	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAAAGCCAGAGCAACAACAGCA..................................................................................................................................................	22	13	0.15	2	0	1	0	1	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACA.........................................................................................................................................	22	13	0.15	2	0	2	0	0	0
...........TGCAGCAGCAA---CAACAACTG----------CAACA--------------------------------------ACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................	29	7	0.14	1	0	1	0	0	0
.................AGCAA---CAACAACTG----------CAACA--------------------------------------ACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
A-----ACAAGTGCAGCAGCAA---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................CAACAAC---------------------------AACA------------------------------ACAGCAAGAAA.....................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................C--ACAGCAACAAC---------------------------AACA------------------------------ACAGCAAGAA......................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................C--ACAGCAACAAC---------------------------AACA------------------------------ACAGCAAG........................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................AGCAACAAC---------------------------AACA------------------------------ACAGCAAGAAA.....................................................................................................................................................................	24	12	0.08	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................CAACAAC---------------------------AACA------------------------------ACAGCAAGAAAAGCC.................................................................................................................................................................	26	12	0.08	1	0	0	0	1	0
.............................................................................................G---------------------------------------------------------CTACAATTGATGCAA--------------------------------------------------------------------CAACAATTG...............................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	1	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTG...............................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--........................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................	27	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAAGCCAGAGCAACAACAGCA..................................................................................................................................................	21	13	0.08	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................	26	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAAGCCAGAGCAACAACAGCAGGA...............................................................................................................................................	24	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG---CA...................................................................................................................................	25	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAGGA...............................................................................................................................................	21	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACAG---C....................................................................................................................................	27	13	0.08	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAGCCACAG---CAA----------------------------------................................................................................................	20	13	0.08	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGA...............................................................................................................................................	19	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGGAGCCACAG---T....................................................................................................................................	21	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGGAGCCACAG---CA...................................................................................................................................	23	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG---CAA----------------------------------CA..............................................................................................	28	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACAG---.....................................................................................................................................	26	13	0.08	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ACAGCAAGAAAAGCCAGAGCAACAAC......................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCACA.........................................................................................................................................	28	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAAGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................	26	13	0.08	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGT.............................................................................................................................................	24	13	0.08	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................AGAAAAGCCAGAGCAACAACAGCA..................................................................................................................................................	24	13	0.08	1	0	0	0	0	1
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGC..............................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAGG................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................GATGCAA--------------------------------------------------------------------CAACAATTGCAGC...........................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--ACA.....................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCA...........................................................................................................................................	20	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................AATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCA--........................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCG...........................................................................................................................................	23	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGGAGCCACAG---CAA----------------------------------................................................................................................	24	13	0.08	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG---C....................................................................................................................................	24	13	0.08	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG---CAA----------------------------------C...............................................................................................	27	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAG..............................................................................................................................................	20	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGGAGCCACAG---CAA----------------------------------C...............................................................................................	24	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCCAGAGCAACAACAGCAG.................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GAGCAACAACAGCAGGAG..............................................................................................................................................	18	13	0.08	1	0	1	0	0	0
............................................................................................................................................................ATTGATGCAA--------------------------------------------------------------------CAACAATTGCAGCC--AT......................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACA.........................................................................................................................................	25	13	0.08	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................	23	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGGAGCCACAG---CAA----------------------------------CATCAGCA........................................................................................	22	14	0.07	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................AGAGCAACAACAGCAGGA...............................................................................................................................................	18	14	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGGAGCCACAG---CAA----------------------------------CATCAG..........................................................................................	20	14	0.07	1	0	1	0	0	0
....................................................................................................................................................................................................................................................AGCC--ACAGCAACAAC---------------------------AACA------------------------------ACA.............................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................................................CC--ACAGCAACAAC---------------------------AACA------------------------------ACAGC...........................................................................................................................................................................	22	16	0.06	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................AGCCAGAGCAACAACAGCAGC................................................................................................................................................	21	17	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------CATCAGCAGCAGCAACAACAAC..........................................................................	24	19	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAA----------------------------------CATCAGCAGCAGCAACAAC.............................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................C--ACAGCAACAAC---------------------------AACA------------------------------ACAGC...........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AG---CAA----------------------------------CATCAGCAGCAGCAACAAT.............................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAG---CAA----------------------------------CATCAGCAGCAGC...................................................................................	19	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................CC--ACAGCAACAAC---------------------------AACA------------------------------AC..............................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CAG---CAA----------------------------------CATCAGCAGCAGCA..................................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAACT.........................................................................	20	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................CAACAAC---------------------------AACA------------------------------ACAGCAAGA.......................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

dp5

A-----ACAAAAGCAGCAAAAG---CAACAGCAG----------CAGCA--------------------------------------ACAGCAG---GTGCA-------------------GC-----------------------------------------AGCCACAAAATCAGCAGCACCAG-------------------------------------------------------------CAA------------------CAGCA------------------------------------------------------------CC---AGCAACAGCACCAGCAACAGCACCA----------------------------------------GCAACAGCACCAGCAACAGCAG---CA----------------GC----AACAGCAGCATGTGCAGCA--------GC--------------AA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................AGCAG---GTGCA-------------------GC-----------------------------------------AGCCACAAAATC..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCACCAGCAACAGCAG---CA----------------GC----AACA.........................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...................AAG---CAACAGCAG----------CAGCA--------------------------------------ACAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCACCAGCAACAGCAG---CA----------------G..................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAGCAG---CA----------------GC----.............................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG---CA----------------GC----AACAGCAGC....................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG---CA----------------GC----AACAGCAGC....................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---CA----------------GC----AACAGCAGCA...................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG---CA----------------GC----AACAGCAGCA...................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

G-----AAGGCA-ATGCAACAA------------ATTGAAGGTGCAACATGCA-------------------------------------------------------------GC---------------------------AGCCTCACACACAACTGTTGCAG--------------------------------------------------------------------------------------------------------------------------------------------GCAACAACGCT---------------------------------------------GGGCAACAGCAG---------CAG-------------CAAC------------------AGGAA------------GAACAACAAAC----AATCATTGAATGTGATATA--------AG-------------AAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................GGTGCAACATGCA-------------------------------------------------------------GC---------------------------AGCCTCACACA........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................ACACACAACTGTTGCAG--------------------------------------------------------------------------------------------------------------------------------------------G...............................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droAna3

T-----ACAAGTGCAACAGCAA---CTTCAACTC----------CAACA--------------------------------------GCAACAACAATTACA-------------------AC-----------------------------------------AGAAACTAGAACAGCAACAGCAA----------------------------------------------------------------------------------------------------------CTTAAATT---------------ACA---------------AC---AGCAGCTAGAACAGCAACAGCAA---TTACAACAG---------CAG-------------CTAGAACAACAACAACAGCTACAACAG---------------------------CATCACCAAATACAACATG-------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

A-----ACAACAGCAGCAGCAT---CAACAACAG----------CAGCA--------------------------------------TCAACAAC--------A----------------------------------------------------------------------GCAACAGCATCAG-------------------------------------------------------------CAA------------------CTGCA------------------------------------------------------------GC---AGCATCAGCAACAGCAACAGCATCA----------------------------------------ACATCAGCAGCATCAACAACAG---CAGCAACATCA-------AC-----AACATCGGGAATGTTTTC--------AA-------------CAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A-----GCAGCAGCAGCAGCAG---TAGCAGCGG----------CAGCAAC-AATAACACACCCAACGGTGCG---------------------------------------------------------------------------------------------------------CAGCAGCAG--------------------------------------------------CATTTGCAG--CAGCAGCAGCAGC---------------------------AACAACG---CGTTGCTAGCAGCAACCAG----------------------------------------------------------------------------------------------------CAACAGTTG---CAGCAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A-----ACAACA-ACACACCAAA--C-----------------------------------------GGTGCGCAGCAGCAGCAGCAGCAACATC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACACCACCAGCAGCATCACCAACAGCAACGTGTTGTTGCCAGCAGCAACCAG------------------------------------------------CAACAGCTG---------CAA-------------CAAC------------------AACAACAACAACAACAACA---------GCAG---------------CATGATAATGGACC-------------AAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A-----ACAG-AGCAGCAGCAG---CAACAGCAG----------CAGCA--------------------------------------GCAGCAGCCGATGCA-------------------AC-----------------------------------------AGAAGCAACATCAG------CAA-------------------------------------------------------------CAG------------------CAACA------------------------------------------------------------CC---AGCAGTTGCAACATTAACAACCTCCAAAGCAGCAG---------CAG-------------CAGC------------------AGTAG------------CAGCAAC-CAC----AGATGTTGCTGGTGGCAAT--------AG-------------CAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-----GCAACAGCAGCAGCAG---CAGCAACAC----------CAGCA--------------------------------------GCAGCAA---TTGCTAGGAAACATGTCGCAAACGG--------------------------------------------------------------CGGCTTTGCCACCGCTCAGCAGTTTGCCACTGCAAGTGGTGCACAATCTGCCACATTTGCTGTCCGG------------------------------------------------------------------------------------------------------------------TAACGGCAG---------CAA-------------CACG------------------GGCAA------------------------------TGCCAACAGCAACACC--------AG-------------CAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCAACAG---AAACTACGAAAGCAA---CAG----------CAACAGC-----------------------------------------TAC--------A----------------------------------------------------------------------ACAGCAACAGCAG-------------------------------------------------------------CAA------------------GAGCA------------------------------------------------------------AC---AGCAACATCAGCAGCAACAGCAACT----------------------------------------AAAACGGCAGCAACTACAACAG---CAGCAG---CA---AC-AGC----AAAGGTTAGAAGTG-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A-----ACAGCAGCAGCAGCAA---CAACACACC----------CAAC-------------------GGTGCGCAGCAGCAGCAGCAGCAACATCAGCAGCA-------------------GC-----------------------------------------AGCAGCAACATCATCAGCAGCAG-------------------------------------------------------------CAG------------------CATCA---------CCAGCAGCAACGGGTTGTTGCCAGCAGCAACCAG------------------------------------------------CAA----------------------------------CAACAGCAGCTGCAGCAGCAACAG---CAACAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A-----CAAAC-ACAGAAGCAAAAGCAA---CAAATTAAATGCTCGACAATTA-------------------------------------------------GGGCCACATGCTGCC------AGAAG---TTGTCAGCAGAGAGAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGATGTCGAAGGAGA------------------------------------------------------------A---------GAA-------------CAAC------------------AACAA------------CAGCAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

A-----AG--------CAACAA------------ATTAAATGCTCGACAATTA-------------------------------------------------GGGTCAAATGCTGCC------AGAAG---TTGTCAGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT------------------------------------------------C--------------------TGTGGCAACAACACTAG------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------GAACAACAAAC----AATCATTG.....................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAATGCTGCC------AGAAG---TTGT...........................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TAAATGCTCGACAATTA-------------------------------------------------GGGTCAAATGC.................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAAATGCTGCC------AGAAG---TTGTC..........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTAG------------------AAGAT------------GAACAACAAAC----AAT..........................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GCC------AGAAG---TTGTCAGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT------------------------------------------------C--------------------................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................ACTAG------------------AAGAT------------GAACAACAAAC----.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GAAG---TTGTCAGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TCCT------------------------------------------------C--------------------TGTGGCAACAACACTAG------------------AAGAT------------GA..........................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGCC------AGAAG---TTGTCAGCAAA....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT------------------------------------------------C--------------------TGTGGCA.........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................AGCAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT------------------------------------------------C--------------------TGTGGC..........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A-----GCAGCAGCAGCAGCAA---CAACACCAT----------CAGCA--------------------------------------GCAGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAACCAGCAACAGCAGCAACAGCAGC---TGCAGCAACAGCAGCAG---------------------------CAG-------------CAACAACAGCAGCAGCAGCAGCAGCAG---CAGCAGCAGCA---------GCAG---------------CATGATAATGGACC-------------AAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................GCCAGCAGCAACCAGCAACAGCAGCAACA.......................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGCAGCAA---CAACACCAT----------CAGCA--------------------------------------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------GCAG---------------CATGATAATGGA..................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......GCAGCAGCAGCAGCAA---CAACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.90	9	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGCA---------GCAG---------------CATGA.........................	21	4	0.75	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCA.................................................................................................................................................................................................................	22	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GCAG---------------CATGATAATG....................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAA.............................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCA.................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAGC.............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AGCAGC---TGCAGCAAC......................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

A-----GCAGCAGCAGCAACAA---CAACACCAT----------CAGCA--------------------------------------GCAGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAACCAG------------------------------------------------C--------------------A--------------------------------------------GCAGCAGCA---------GCAG---------------CATGATAATGGACCAACGTCCCATCATTTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................ATCATCAGCAGCAACGTGTT.......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.......................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCAGCAACG...........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................A---CAACACCAT----------CAGCA--------------------------------------GCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................A---CAACACCAT----------CAGCA--------------------------------------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
............................................................................................AGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCATCAGCA.................................................................................................................................................................................................................	19	10	0.10	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................AACCAG------------------------------------------------C--------------------A--------------------------------------------GCAGCAGCA---------GC...............................................	19	15	0.07	1	0	0	1	0
................................AT----------CAGCA--------------------------------------GCAGCAGC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA..........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1

droYak3

C-----ACAAGCACAGAAGCAAAAGCAA---CAAATTAAATGCTCGCCAATTA-------------------------------------------------GGGCCACATGCAGCC------AGAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCG------------------------------------------------A--------------------AGCCGCAACGCAGCTAC------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................GAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

A-----CAAA-AGTAAAAGCAA---CAA------ATTAAATGCTCGACAATTA-------------------------------------------------GGGCCACATGCGGCA------AGAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG------------------------------------------------C--------------------CGCCGCAACGCAGCTAG------------------AAGAT------------GAACAACAAAC----AATCATTGAATGTGATATA--------GG-------------AAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................TAAATGCTCGACAATTA-------------------------------------------------GGG.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCAGCTAG------------------AAGAT------------............................................................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................GGCCACATGCGGCA------AGAAG---TTGT...........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................AGAAG---TTGTCAGCAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG------------------------------------------------C--------------------CGCC............................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..................................................TTA-------------------------------------------------GGGCCACATGCGGCA------AGAAG---TTG............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAATGTGATATA--------GG-------------AA.	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................CACATGCGGCA------AGAAG---TTGT...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................CAA---CAA------ATTAAATGCTCGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................AATGCTCGACAATTA-------------------------------------------------GGGCCACATGCG................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0

dvi_15241

scaffold_13047:2154785-2154856 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.9	-12.8	-12.1