ID:

dvi_15212

 Coordinate:

scaffold_13047:1870058-1870262 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.7 -10.5 -10.3 -10.2

Flybase annnotation

exon [dvir_GLEANR_9064:6]; CDS [Dvir\GJ23734-cds]; CDS [Dvir\GJ23734-cds]; exon [dvir_GLEANR_9064:5]; intron [Dvir\GJ23734-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAACTGGATCTGGATGCGATGGCCGAACAGGATAGCTGGCAGGCAACGGTGAGTATATAAAACAATATGTTTTGATTACATAAAAGTCAAGGCGTATGTCAGAAAGTCAGAAGTTGGGGACAAGTCGTTTTGAAACGACAAGATTTACATTTTAACCGCAACAAAAGAAAACTGTTTTTTTTTAATCGTTAAGAAAATCAATAGAAACCCGAATCAAAAATTCAAGTGTGGTCTCATTTTGCTGCCTTTGCAGACGAAAACGGAACCACGTGCCAGGCACAGCCGCATCGTAGCCACCGTACA
**********************************************************************************************************************...........((((..(((((.((((...(((.(((...............))).)))...))))...))))).))))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M028
head
 V053
head
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 V047
embryo
 V116
male body		 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106729
mixed whole adult body
...AACTGGATCTGGATGCGAT........................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....ACTGGATCTGGATGCGATGGCC....................................................................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GCCAGGCACAGCCGCATCG............. 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AACTGGATCTGGATGCGATGGCC....................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATCTGGATGCGATGGCC....................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GGCACAGCCGCATCGTAGCCACC..... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGGCCGAACAGGATAGCTGG........................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GACGAAAACGGAACCACGTGCCA............................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCTGGATGCGATGGCCGAAC................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GGATCTGGATGCGATGGC........................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GTGCCAGGCACAGCCGCATCG............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................ATAGCTGGCTAGCAACGGT............................................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................ATAGCTGGCAGGCAACGAC............................................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............ATGCGATGCCCGAACAGGATAG............................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTTTTTAATCGTTAAGAA............................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TCGGGACAAGTGGTTTTG........................................................................................................................................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AACGGAACCACGTGCCAGGCA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTGGATCTGGATGCGATGGCC....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................ACCACGTGCCAGGCACAGCCGCATCGT............ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CGACGAAAACGGAACCACGT................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................AACGACGAAAACGGAACCACGT................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GCAACTGGATCTGGATGCGATGGCC....................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................AAACGGAACCACGTGCCAGGCA........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GACGAAAACGGAACCACGTGCC............................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GCCAGGCACAGCCGCATCGTA........... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GAACCACGTGCCAGGCACAGCCGCATC.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CAACTGGATCTGGATGCGAT........................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GGGACAAGTCGTTTTGAAACGACAAG................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GGATAGGTGGGAGGCAACGA.............................................................................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACAGGATAGGTGGGAGACAA................................................................................................................................................................................................................................................................. 20 3 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TAGCTGGCTAGCAACGGTG............................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................GGATAGGTGGGAGGCAAC................................................................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................TAGCTGGCTAGCAACGGT............................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................AAGTATGTAAAACAATATGGT........................................................................................................................................................................................................................................ 21 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................TTTTAACCGGAAGAAAAGAAC..................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CATAGCTGGCTAGCAACGGT............................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................AGAAAGGCAGAAGTTGGT......................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................CGGGACAAGTGGTTTTGTAA........................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................TGAGAAAGGCAGAAGTTG........................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................TGAGAAAGGCAGAAGTTGGT......................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGTATGTAAAACAATATG.......................................................................................................................................................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................CTAGATGGCAACGGTGAG.......................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTCGGGACAAGTGGTTTTG........................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGGATAGGTGGGAGGC................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................CGGGACAAGTGGTTTTGTA......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGTTGACCTAGACCTACGCTACCGGCTTGTCCTATCGACCGTCCGTTGCCACTCATATATTTTGTTATACAAAACTAATGTATTTTCAGTTCCGCATACAGTCTTTCAGTCTTCAACCCCTGTTCAGCAAAACTTTGCTGTTCTAAATGTAAAATTGGCGTTGTTTTCTTTTGACAAAAAAAAATTAGCAATTCTTTTAGTTATCTTTGGGCTTAGTTTTTAAGTTCACACCAGAGTAAAACGACGGAAACGTCTGCTTTTGCCTTGGTGCACGGTCCGTGTCGGCGTAGCATCGGTGGCATGT
************************************************************************************************************...........((((..(((((.((((...(((.(((...............))).)))...))))...))))).))))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060681
Argx9_testes_total
 GSM1528803
follicle cells		 SRR060659
Argentina_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 M047
female body
 SRR060656
9x160_ovaries_total
....................................................................................................................................................TGCAAAATTGGCGTTGTTT.......................................................................................................................................... 19 1 10 0.40 4 0 2 0 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AAAACTTCGGAAACGTGTGCTT............................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTGTAAAATTGGCGTTGT............................................................................................................................................ 18 1 12 0.17 2 0 0 0 0 0 0 0 1 1 0 0 0
......................................................................................................................................................CAAAATTGGCGTTGTGTT......................................................................................................................................... 18 2 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCAAAATTGGCGTTGTTT.......................................................................................................................................... 18 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTAAAATTGGCGTTGTTG.......................................................................................................................................... 19 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................AATTGCAAAATTGGCGTTGTT........................................................................................................................................... 21 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................GACAAAAACAATTTCGCAATT............................................................................................................... 21 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TGGGTGCACGGTCCGCATC..................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................GCCTTTGCCGTGCTGCACG.............................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................AAGCAAAATTGGCGTTGTT........................................................................................................................................... 19 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAACGTCGGCTATCGCCTTG..................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................CAAAATTGGCGTTGTTGCCT....................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGAAAATTGGCGTTG............................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:1870008-1870312 + dvi_15212 AGCAACTGGATCTGGATGCGATGGCCGAAC---AGGATAGCTGGC-------AGGCAACGGTG----AGTATATA----AAACAATATGTTTTGATTACATAAAAG----------------------------------------------TC---AAGGC--------GTATGTCAGAAAGTCA---------------------------------------------------------------------------------------------------------------GAAGTTGGGGACAAG----------------------------------------------------------TCG-TTTT------GA----------------------------------------------------------AACGACAAGATTTACATTTTAACCGCAACAAA-A-GAA-------AACTGTTTTTTTTT---AATCGTTAAGAAAATCAATAGA------------AACCCGAATCAA-AAATTCAAGTGT-----------------------GGTCTC--ATTTTGCTGCCTTTGCAG-ACGA---AAACGGAA----------CCA----------------------------------------CGTGCCAGGCA-------------CAGCCGCATCGTAGCCACCGTACA
droMoj3 scaffold_6540:3800431-3800782 + AGCAGCTCGATCTAGATGCGGTCGTGGAGC---AGGAGAGCTGGC-------AGTCAACGG----TGCGTATATACTCTAAACGAAATGTACAAATTGAGTATGAG----------------------------------------------TGTAGAAGGTGTGTCTGTCTGTGTCGG-----------------------------------------------------------------------------------TGTGTGTGTGTTTAGATGTAGTCAGAAGTCAGTCAGTAGTTAGGAATTTT----------------------------------------------------------TTGATTTT------GA----------------------------------------------------------GTGATCGAGATTTATATTTTGACCCCAGCAGA-G-GCA-------GACAGTT---TTTT---AATCCTTAAGAAAATCAATAACCACACATAAACATTTCTAGAACAT-AAATTCAAGTGC-----------------------GGCTTC--TTGCT------CTTGCAG-ACGA---AGGCGGAA----------CCA----------------------------------------CGGACGAGGCA-------------CAGTCGGATCGTAGCCACCGTCCA
droGri2 scaffold_14906:8707064-8707244 + TTTTACATCAACAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTTAAAGTGCAAGATATAGAAA-------AACTATCATTTTTG------------------------------TATAGCAAACACAAAACACGAAATTCAAGTGTCCCTCGAACTTTGTTAATTTTGTGGCAAC-----TT-G-CAATTTGCAG-ACGA---GAGCGGAG----------CCA----------------------------------------CGGGCGAGACA-------------CAGCCGGATTGTAGCCACGGTGCA
droWil2 scf2_1100000004902:4607437-4607748 - AACAACTCGATCTTGACGCCGGGATG--CC---TGTTGATCAGGTGAGTTTCAGTTTTAAATG-----------------------------------------------------TCATATACAAAAAAATAATATTAAAAAACACCAA--------------------------------------------------------------------------------AACAAA-AAAAAAACACATTTATTTCCATCAACATTTATGGCCTTACA--------------------------TGGCTTTTAATACACATTTTAAATAAACTTGCTACCCCTCAACCCCAAACATTTTTGAAACAATTGATTGTATAAAATTTAACCAA-AGTGAAA-T-------------------------------------------------------------------------------------ATTTT--GTCT---TT-------------------------------------------------------------TT------------------------CGTTTTTTGTTT-------TCTGCAG-AGCA---AATCCGAG-----------------------------------------------------CGTACAAGGCA-------------CAATCGTATTGTAGCCACTGTCCA
dp5 2:27265705-27265981 - AGCAATTGGATCTGGATGCCATGATG--CCGTCAGCCGAACAGGTGTGTAGCAGGCACTGGCCATTCCGTCAGTTCTCG--------------------------------------------------------------------------------------------------AACTGACCAG-----C-CCTA--GGG-TATACCGGATA---TAAAT--------------------A------------------------------------------------------------------------TATATTTT----------------------------------------------------------------------------------------------------------------------T-ACAATCCAGCCATACACTTAAATCCGAA---A-A-GCA-------A--AGTT---TTTTCGAAATAC------------------AC-------------------GCAAAATTCAATTAACAATTAAAAATT-------T---ACATT------------CATTTACAG-ACGA---AAGCAGAT----------CAG----------------------------------------CGTCTGCGGCACACACAAA-GCAACAATAGGATTGTTGCCACTGTACA
droPer2 scaffold_6:2555731-2556008 - AGCAGTTGGATCTGGATGCCATGATG--CCGTCAGCCGAACAGGTGTGTAGCAGGCACTGGCCATTCCGTCAGTTCTCG--------------------------------------------------------------------------------------------------AACTGACCAG-----C-CCTA--GGGATATACCGGATA---TAAAT--------------------A------------------------------------------------------------------------TATATTTC----------------------------------------------------------------------------------------------------------------------T-ACAATCCAGCCATACACTCAGATCCGAA---A-A-GCA-------A--AGTT---TTTTCGAAATAC------------------AC-------------------GCAAAATTCATTTAACAATTTAAAATT-------T---ACATT------------CATTTACAG-ACGA---AAGCAGAT----------CAG----------------------------------------CGTCTGCGGCACACACAAA-GCAACAATAGGATTGTTGCCACTGTACA
droAna3 scaffold_13340:11019688-11020063 - AGCAGCTCGACCTCGATTCGATGATG--AC---AGGAGAACAGGTGCGTAAAAT----------------------------------TT--------------ACTAT-TGAAACCCA-AGAC---------A----------------GGCGTAGGTAGCCCAGTCAAGTTTGTCAGTTGATCGAAGAG-C-CCTA--AA--------CGTAGAATTAAGCGAATAAAAACTTACAATAT--------------------TCAATATTTATTTTGATATATT-GGTAGTCGAGCCACATCCACAGATTTT----------------------------------------------------------CTTATTTT------AACCAA-ACTTTCA-AATTTTTCGATTATCG--CGATCGGTACTTCCCGGCTAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTT-C---------C------CGCACATAGAACCACACGGAATCCCCACGAAGGCACCACAATCAGA------------ACCACA-GTCCGAGCCACAAC----CAGCAACAGCGGATCGTTGCCACCGTCCA
droBip1 scf7180000396374:62946-63295 + AGCAGCTGGACCTGGATTCAATGATG--AC---AGGAGAACAGGTGGGTAAAAT----------------------------------AT-------------AACTATATGT-------AGAC---------A----------------AGCCTAGGTAGCTCAGTCAAGTTTGTCAGTTGATCAGAGAA-C-CCTA--GA--------CGTAGAATTATGCGAATAAGAACTCACAATAT--------------------TATATATTTATTTAGATATATT-GGTAGTCGAGCCACTTCCACAGATTTT----------------------------------------------------------CTTATTTT------AACCAC-ACTTTCCCAACCTTTTGATTATCG--CGATCGGTATTGTCCGGCTAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------CGTTTT--ATTCC-C---------G--------TCCGTAGAACCCCACGGAGAGCCCACGAAGGCAC---CAA-------------------------CACAGC----------CAGCAGCAGCGGATTGTTGCCACCGTCCA
droKik1 scf7180000302247:283416-283508 + AGCAACTGGATCTCGATGCTATGATG--CC---AGGAGATCAGGTGAGTTATTGTAAA--------------------------------------------------------------------------------------------------AAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT------------CATATAAATTTA--------------------------------------CAAGCTA---------------------------------------------------------------------------------------------------TGTTTT--GATTC-T---------A---------------------------------------------------------------------------------------------------------------------T
droFic1 scf7180000454106:2559203-2559261 + CAAAGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCACA------------ACAACA-GTCCGAGTC----------ACAACCACAGGATCGTTGCCACCGTTCA
droEle1 scf7180000491212:1188387-1188565 + TTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGTTTT------AACCAG-CTTAATGCAAATTTCGGACTAAGAAAAAT------------CGCTTAAATT----------------------------------------AAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTG-T---------TTG-----CTATACAGAACCGGACGGAAACTCCGCGGAGGCAC---AACCCAACTCAAAGTCACA---ACA-GTCACAAT----------CAGAATCACAGGATCGTAGCCACTGTTCA
droBia1 scf7180000302402:7321092-7321263 - TTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------AGCCAC-CCTTATGAAAATTTCGGACTAAGA--AAT------------CGCAAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTT-T--------CGC-CCAA---AAACAGAACCGCACGGAAACCCACCGGAGGCAC---AACCCAACCCAAAGTCATAGTCAGA-GTCACAAT----------CACAATCACAGGATCGTAGCCACTGTTCA
droTak1 scf7180000414009:214787-214894 + AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------------------------------------TAAGTTT---------------------------------------------------------------------------------------------------CGTTTT--ATTTT-T---------CCA----CGCACACAGAGCCAC---------CAGCGAAGGCCCAACAACCCAACCCAAAG-------------TCACAAT----------CACAATCACAGGATCGTAGCCACTGTTCA
droEug1 scf7180000409490:112789-113138 + AGCAATTGGATCTGGATGCCATGATG--CC---AGGCGATCAGGTGAGAAAAGA-----------------------------------T--AGATTGAGTTTTAT----------------------------------------------CCCAGATGGCTCATTTATGTTTGTCAGTTAACCGTAGAA-ACTTTA------------TAAAGAGTTTGGCAAACA-GAACAAA-AAAACAA--------------------TATATTTA----------TT-GATAGCCAACTTATTTTCATTAT---------------------------------------------------------CTTTATTTGTTTT------AACCAACACTTATGAAAGTTTCGGACTAAGG--AGT------------TCCTAAAATT----------------------------------------CAAGTTT-----------------------------------------------------------------------------------------------T---TGTTTC--GTTTT-C---------C------ATCACACAGAACCGGACGGAAGCTACACGGAGGCAC---AACCCAACCCAAAGTCACAATCACA-GTCAGAGT----------CACAATCACAGGATCGTAGCCACTGTTCA
dm3 chr3R:4609794-4609825 - AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTTCA
droSim2 3r:16382028-16382059 + AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTTCA
droSec2 scaffold_0:17247032-17247054 + AGCAACTGGATCTGGATGCCATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:8671147-8671486 - AGCAACTGGATCTGGATGCCATGATG--CC---AGGCGATCAGGTGTGTAACGCCCCTTAGCC-----------------------------------------------------CCA-ATAC---------ATATTCAGAAACTCCACAGCATAGCTAGCACATTAATGTTTGTCAGTTATTCGTGGAAAACCTTACAGA--------CGTTG---TTGTC--------------------A--------------------TATATTTAT----------T-GAGTCCCAACT-------------------------------------CACT-----------------ATTTGCATTACCCTTACTTGTTTA----------------------CAACGAGGACAACGA--GGT------------CGCTAAAATT----------------------------------------CAAGTCT---------------------------------------------------------------------------------------------------TATTTT--CTTCC-T---------A------TCCACACAGAACCGGACGGAAACTCCCAGAAGGCAC---AATCCAGCGCATAGTCACAGCCACA-GTCAAGGT----------CACAACCATAGGATCGTAGCCACAGTTCA
droEre2 scaffold_4770:16976771-16976802 + AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCAACTGGATCTGGATGCGATGGCCGAAC---AGGATAGCTGGC-------AGGCAACGGTG----AGTATATA----AAACAATATGTTTTGATTACATAAAAG----------------------------------------------TC---AAGGC--------GTATGTCAGAAAGTCA---------------------------------------------------------------------------------------------------------------GAAGTTGGGGACAAG----------------------------------------------------------TCG-TTTT------GA----------------------------------------------------------AACGACAAGATTTACATTTTAACCGCAACAAA-A-GAA-------AACTGTTTTTTTTT---AATCGTTAAGAAAATCAATAGA------------AACCCGAATCAA-AAATTCAAGTGT-----------------------GGTCTC--ATTTTGCTGCCTTTGCAG-ACGA---AAACGGAA----------CCA----------------------------------------CGTGCCAGGCA-------------CAGCCGCATCGTAGCCACCGTACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AACTGGATCTGGATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000100000000000000000000000000000000000000000000000000100
....ACTGGATCTGGATGCGATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002020000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGCA-------------CAGCCGCATCG.............1912.002000000000000000000000000000000000000000200000000000000000000000
...AACTGGATCTGGATGCGATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000000000000000000000000000000000000000000000000000000000000
......TGGATCTGGATGCGATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCA-------------CAGCCGCATCGTAGCCACC.....2311.001000000000000000000000000000010000000000000000000000000000000000
.....................TGGCCGAAC---AGGATAGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACGA---AAACGGAA----------CCA----------------------------------------CGTGCCA.........................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........TCTGGATGCGATGGCCGAAC---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.......GGATCTGGATGCGATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAGGCA-------------CAGCCGCATCG.............2111.001000000000000000001000000000000000000000000000000000000000000000
....................................ATAGCTGGC-------AGGCAACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTT---AATCGTTAAGAA.....................................................................................................................................................................................................................1911.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAA----------CCA----------------------------------------CGTGCCAGGCA-------------........................2111.001001000000000000000000000000000000000000000000000000000000000000
.....CTGGATCTGGATGCGATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------CCA----------------------------------------CGTGCCAGGCA-------------CAGCCGCATCGT............2711.001000000000000000000100000000000000000000000000000000000000000000
.GCAACTGGATCTGGATGCGATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAA----------CCA----------------------------------------CGTGCCAGGCA-------------........................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACGA---AAACGGAA----------CCA----------------------------------------CGTGCC..........................................2211.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGCA-------------CAGCCGCATCGTA...........2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------CCA----------------------------------------CGTGCCAGGCA-------------CAGCCGCATC..............2711.001001000000000000000000000000000000000000000000000000000000000000
..CAACTGGATCTGGATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................GGGACAAG----------------------------------------------------------TCG-TTTT------GA----------------------------------------------------------AACGACAAG......................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
AGCAGCTCGATCTAGATGCGGTCGTGGAGC---AGGAGAGCTGGC-------AGTCAACGG----TGCGTATATACTCTAAACGAAATGTACAAATTGAGTATGAG----------------------------------------------TGTAGAAGGTGTGTCTGTCTGTGTCGG-----------------------------------------------------------------------------------TGTGTGTGTGTTTAGATGTAGTCAGAAGTCAGTCAGTAGTTAGGAATTTT----------------------------------------------------------TTGATTTT------GA----------------------------------------------------------GTGATCGAGATTTATATTTTGACCCCAGCAGA-G-GCA-------GACAGTT---TTTT---AATCCTTAAGAAAATCAATAACCACACATAAACATTTCTAGAACAT-AAATTCAAGTGC-----------------------GGCTTC--TTGCT------CTTGCAG-ACGA---AGGCGGAA----------CCA----------------------------------------CGGACGAGGCA-------------CAGTCGGATCGTAGCCACCGTCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...AGCTCGATCTAGATGCGGTCGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003200001
.......................GTGGAGC---AGGAGAGCTGGC-------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003100002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCA-------------CAGTCGGATCGTAGCCACC.....2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------CAGTCGGATCGTAGCCACC.....2111.001000001
.............................C---AGGAGAGCTGGC-------AGTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............TAGATGCGGTCGTGGAGC---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...AGCTCGATCTAGATGCGGTCGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.GCAGCTCGATCTAGATGCGGTCGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCA-------------CAGTCGGATCGTAGCCACCGT...2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA---AGGCGGAA----------CCA----------------------------------------CGGACGAG........................................2311.001000100
AGCAGCTCGATCTAGATGCGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
AGCAGCTCGATCTAGATGCGGTCGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACGA---AGGCGGAA----------CCA----------------------------------------CGGACGAGGCA-------------C.......................2811.001000001
....................GTCGTGGAGC---AGGAGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAA----------CCA----------------------------------------CGGACGAGGCA-------------........................2011.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCA-------------CAGTCGGATCGTAGCCAC......2711.001000001
..........................GAGC---AGGAGAGCTGGC-------AGTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAA----------CCA----------------------------------------CGGACGAGGC......................................2011.001100000
droGri2
TTTTACATCAACAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTTAAAGTGCAAGATATAGAAA-------AACTATCATTTTTG------------------------------TATAGCAAACACAAAACACGAAATTCAAGTGTCCCTCGAACTTTGTTAATTTTGTGGCAAC-----TT-G-CAATTTGCAG-ACGA---GAGCGGAG----------CCA----------------------------------------CGGGCGAGACA-------------CAGCCGGATTGTAGCCACGGTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA---GAGCGGAG----------CCA----------------------------------------CGGGCGAGAC......................................2511.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GAGCGGAG----------CCA----------------------------------------CGGGCGAGACA-------------........................2311.00101
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAG----------CCA----------------------------------------CGGGCGAGAC......................................2011.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGGATTGTAGCCACG.....1911.00101
droWil2
AACAACTCGATCTTGACGCCGGGATG--CC---TGTTGATCAGGTGAGTTTCAGTTTTAAATG-----------------------------------------------------TCATATACAAAAAAATAATATTAAAAAACACCAA--------------------------------------------------------------------------------AACAAA-AAAAAAACACATTTATTTCCATCAACATTTATGGCCTTACA--------------------------TGGCTTTTAATACACATTTTAAATAAACTTGCTACCCCTCAACCCCAAACATTTTTGAAACAATTGATTGTATAAAATTTAACCAA-AGTGAAA-T-------------------------------------------------------------------------------------ATTTT--GTCT---TT-------------------------------------------------------------TT------------------------CGTTTTTTGTTT-------TCTGCAG-AGCA---AATCCGAG-----------------------------------------------------CGTACAAGGCA-------------CAATCGTATTGTAGCCACTGTCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTATTGTAGCCACTGTCC.2114.00440000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAG-----------------------------------------------------CGTACAAGGCA-------------CA......................1913.00330000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAG-----------------------------------------------------CGTACAAGGCA-------------CAATCGTATT..............2712.00220000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTATTGTAGCCACT.....1812.00220000
..............GACGCCGGGATG--CC---TGTTGATCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
......TCGATCTTGACGCCGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAG-----------------------------------------------------CGTACAAGGCA-------------CAATCGTAT...............2611.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAG-----------------------------------------------------CGTACAAGGCA-------------CAATC...................2211.00110000
....................GGGATG--CC---TGTTGATCAGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100100
dp5
AGCAATTGGATCTGGATGCCATGATG--CCGTCAGCCGAACAGGTGTGTAGCAGGCACTGGCCATTCCGTCAGTTCTCG--------------------------------------------------------------------------------------------------AACTGACCAG-----C-CCTA--GGG-TATACCGGATA---TAAAT--------------------A------------------------------------------------------------------------TATATTTT----------------------------------------------------------------------------------------------------------------------T-ACAATCCAGCCATACACTTAAATCCGAA---A-A-GCA-------A--AGTT---TTTTCGAAATAC------------------AC-------------------GCAAAATTCAATTAACAATTAAAAATT-------T---ACATT------------CATTTACAG-ACGA---AAGCAGAT----------CAG----------------------------------------CGTCTGCGGCACACACAAA-GCAACAATAGGATTGTTGCCACTGTACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAAA-GCAACAATAGGATTGT............2511.0010100000000
....ATTGGATCTGGATGCCATGATG--CCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..............GATGCCATGATG--CCGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...............ATGCCATGATG--CCGTCAGCCGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............GATGCCATGATG--CCGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAA-GCAACAATAGGATTGTTGCCACT.....2911.0010001000000
.......................ATG--CCGTCAGCCGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-GCAACAATAGGATTGT............1911.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT----------CAG----------------------------------------CGTCTGCGGCACACA.................................2111.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAT----------CAG----------------------------------------CGTCTGCGGCACACA.................................2311.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT----------CAG----------------------------------------CGTCTGCGGCACACAC................................2211.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------------------------------CGTCTGCGGCACACAC................................1911.0010000010000
...............ATGCCATGATG--CCGTCAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AGCAGTTGGATCTGGATGCCATGATG--CCGTCAGCCGAACAGGTGTGTAGCAGGCACTGGCCATTCCGTCAGTTCTCG--------------------------------------------------------------------------------------------------AACTGACCAG-----C-CCTA--GGGATATACCGGATA---TAAAT--------------------A------------------------------------------------------------------------TATATTTC----------------------------------------------------------------------------------------------------------------------T-ACAATCCAGCCATACACTCAGATCCGAA---A-A-GCA-------A--AGTT---TTTTCGAAATAC------------------AC-------------------GCAAAATTCATTTAACAATTTAAAATT-------T---ACATT------------CATTTACAG-ACGA---AAGCAGAT----------CAG----------------------------------------CGTCTGCGGCACACACAAA-GCAACAATAGGATTGTTGCCACTGTACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGATTGTTGCCACT.....1814.004400000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-GCAACAATAGGATTGT............2012.002200000
AGCAGTTGGATCTGGATGCCATGATG--C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-GCAACAATAGGATTGTT...........2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGATTGTTGCCACC.....1811.001100000
.GCAGTTGGATCTGGATGCCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACAAA-GCAACAATAGGATTGT............2611.001100000
droAna3
AGCAGCTCGACCTCGATTCGATGATG--AC---AGGAGAACAGGTGCGTAAAAT----------------------------------TT--------------ACTAT-TGAAACCCA-AGAC---------A----------------GGCGTAGGTAGCCCAGTCAAGTTTGTCAGTTGATCGAAGAG-C-CCTA--AA--------CGTAGAATTAAGCGAATAAAAACTTACAATAT--------------------TCAATATTTATTTTGATATATT-GGTAGTCGAGCCACATCCACAGATTTT----------------------------------------------------------CTTATTTT------AACCAA-ACTTTCA-AATTTTTCGATTATCG--CGATCGGTACTTCCCGGCTAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTT-C---------C------CGCACATAGAACCACACGGAATCCCCACGAAGGCACCACAATCAGA------------ACCACA-GTCCGAGCCACAAC----CAGCAACAGCGGATCGTTGCCACCGTCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACCACA-GTCCGAGCCA.....................................1812.002000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGGATCGTTGCCACCGTC..2311.001000001
....GCTCGACCTCGATTCGATGATG--AC---AGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCCCACGAAGGCACC...........................................................................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACACGGAATCCCCACGAAGG...............................................................................2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCAGA------------ACCACA-GTCCGAGCCACA...................................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACCACA-GTCCGAGCCACAAC----.............................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAGGCACCACAATCAGA------------ACC...................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGGATCGTTGCCACCGTCC.2511.001000001
...................GATGATG--AC---AGGAGAACAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............TCGATTCGATGATG--AC---AGGAGAACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACA-GTCCGAGCCACAAC----CAG..........................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGAATCCCCACGAAGGCACC...........................................................................2411.001000001
AGCAGCTCGACCTCGATTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAATCCCCACGAAGGCACCACAAT......................................................................2711.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----CAGCAACAGCGGATCGT............2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GTCCGAGCCACAAC----CAGCAACA.....................2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAGA------------ACCACA-GTCCGAG........................................2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGGATCGTTGCCACCGTCC.2311.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGA------------ACCACA-GTCCGAGCC......................................2111.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------ACCACA-GTCCGAGCCACA...................................2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACCACA-GTCCGAGCCACAAC----CAGCAAC......................2911.001010000
droBip1
AGCAGCTGGACCTGGATTCAATGATG--AC---AGGAGAACAGGTGGGTAAAAT----------------------------------AT-------------AACTATATGT-------AGAC---------A----------------AGCCTAGGTAGCTCAGTCAAGTTTGTCAGTTGATCAGAGAA-C-CCTA--GA--------CGTAGAATTATGCGAATAAGAACTCACAATAT--------------------TATATATTTATTTAGATATATT-GGTAGTCGAGCCACTTCCACAGATTTT----------------------------------------------------------CTTATTTT------AACCAC-ACTTTCCCAACCTTTTGATTATCG--CGATCGGTATTGTCCGGCTAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------CGTTTT--ATTCC-C---------G--------TCCGTAGAACCCCACGGAGAGCCCACGAAGGCAC---CAA-------------------------CACAGC----------CAGCAGCAGCGGATTGTTGCCACCGTCCASizeHit CountTotal NormTotal
No Reads
droKik1
AGCAACTGGATCTCGATGCTATGATG--CC---AGGAGATCAGGTGAGTTATTGTAAA--------------------------------------------------------------------------------------------------AAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT------------CATATAAATTTA--------------------------------------CAAGCTA---------------------------------------------------------------------------------------------------TGTTTT--GATTC-T---------A---------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCACA------------ACAACA-GTCCGAGTC----------ACAACCACAGGATCGTTGCCACCGTTCASizeHit CountTotal NormTotal
No Reads
droEle1
TTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGTTTT------AACCAG-CTTAATGCAAATTTCGGACTAAGAAAAAT------------CGCTTAAATT----------------------------------------AAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTG-T---------TTG-----CTATACAGAACCGGACGGAAACTCCGCGGAGGCAC---AACCCAACTCAAAGTCACA---ACA-GTCACAAT----------CAGAATCACAGGATCGTAGCCACTGTTCASizeHit CountTotal NormTotal
No Reads
droBia1
TTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------AGCCAC-CCTTATGAAAATTTCGGACTAAGA--AAT------------CGCAAAAATT----------------------------------------CAAGTTT---------------------------------------------------------------------------------------------------TGTTTT--ATTTT-T--------CGC-CCAA---AAACAGAACCGCACGGAAACCCACCGGAGGCAC---AACCCAACCCAAAGTCATAGTCAGA-GTCACAAT----------CACAATCACAGGATCGTAGCCACTGTTCASizeHit CountTotal NormTotal
No Reads
droTak1
AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------------------------------------TAAGTTT---------------------------------------------------------------------------------------------------CGTTTT--ATTTT-T---------CCA----CGCACACAGAGCCAC---------CAGCGAAGGCCCAACAACCCAACCCAAAG-------------TCACAAT----------CACAATCACAGGATCGTAGCCACTGTTCASizeHit CountTotal NormTotal
No Reads
droEug1
AGCAATTGGATCTGGATGCCATGATG--CC---AGGCGATCAGGTGAGAAAAGA-----------------------------------T--AGATTGAGTTTTAT----------------------------------------------CCCAGATGGCTCATTTATGTTTGTCAGTTAACCGTAGAA-ACTTTA------------TAAAGAGTTTGGCAAACA-GAACAAA-AAAACAA--------------------TATATTTA----------TT-GATAGCCAACTTATTTTCATTAT---------------------------------------------------------CTTTATTTGTTTT------AACCAACACTTATGAAAGTTTCGGACTAAGG--AGT------------TCCTAAAATT----------------------------------------CAAGTTT-----------------------------------------------------------------------------------------------T---TGTTTC--GTTTT-C---------C------ATCACACAGAACCGGACGGAAGCTACACGGAGGCAC---AACCCAACCCAAAGTCACAATCACA-GTCAGAGT----------CACAATCACAGGATCGTAGCCACTGTTCASizeHit CountTotal NormTotal
No Reads
dm3
AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTTCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCGTAGCCA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACAGGATCGTAGCCACAGTTCA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCACAGGATCGTAGCCACA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGGATCGTAGCCACG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCGTAGCCACAGTTCA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACAGGATCGTAGCCACA.....2211.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCGTAGCCACAGTTCA2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGCAACTGGATCTGGATGCCATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGCAACTGGATCTGGATGCCATGATG--CC---AGGCGATCAGGTGTGTAACGCCCCTTAGCC-----------------------------------------------------CCA-ATAC---------ATATTCAGAAACTCCACAGCATAGCTAGCACATTAATGTTTGTCAGTTATTCGTGGAAAACCTTACAGA--------CGTTG---TTGTC--------------------A--------------------TATATTTAT----------T-GAGTCCCAACT-------------------------------------CACT-----------------ATTTGCATTACCCTTACTTGTTTA----------------------CAACGAGGACAACGA--GGT------------CGCTAAAATT----------------------------------------CAAGTCT---------------------------------------------------------------------------------------------------TATTTT--CTTCC-T---------A------TCCACACAGAACCGGACGGAAACTCCCAGAAGGCAC---AATCCAGCGCATAGTCACAGCCACA-GTCAAGGT----------CACAACCATAGGATCGTAGCCACAGTTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACCATAGGATCGTAGCCACA.....2413.00301000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----------CACAACCATAGGATCGTAGCCACA.....2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGACGGAAACTCCCAGAAGGCAC---.........................................................................2711.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAGGCAC---AATCCAGCGCATAGT..........................................................2711.00100000010000
................TGCCATGATG--CC---AGGCGATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACCATAGGATCGTAGCCACAGTT..2711.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC---AATCCAGCGCATAGTCACAGCCACA-...............................................2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACGGAAACTCCCAGAAGGC..............................................................................2311.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATAGGATCGTAGCCACA.....2111.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCACAGCCACA-GTCAAGGT----------CACAA........................2711.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA-GTCAAGGT----------CACAACCATAGGATCGT............2911.00100000010000
droEre2
AGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCACAGTACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCAC......2313.0031000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCGTAGCCACAGT...2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACAGGATCGTAGC.........1811.0010000010
...C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCACAGGATCGTAGCCA.......2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGGATCGTAGCCACA.....2111.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGATCGTAGCCACA.....1811.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACAGGATCGTAGCCA.......2011.0010000010

Generated: 05/16/2015 at 09:04 PM