ID:

dvi_15179

 Coordinate:

scaffold_13047:1738563-1738713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.8

Flybase annnotation

exon [dvir_GLEANR_9052:7]; CDS [Dvir\GJ23721-cds]; intron [Dvir\GJ23721-in]

Repeatable elements

NameClassFamilyStrand
(CATATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTAAGGGCTATACCGATGAGGGTGAATTTGACTGGACAGGGAAGACCATGGTAGGTAACAAGTTAAAACGTAAAATCGATACGCTGATCACTATGTGGCTCTTTTACTATAACTATTGTATACATATACATACATATACATATACATATGCATATACATATATATGTACATATATTAATGTATCTATATATGAAATGGATATTCGCATTCTCATTGACAATCACCTGAGCCGAATTCTAAACTCACATTTA
***********************************************************************************..........(((((........))))).....((((((..((((......))))..)))))).((.(((...((((((((.((((((......)))))).))))))))..))).))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060664
9_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 M027
male body		 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR1106729
mixed whole adult body
 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
...AGGGCTATACCGATGAGGG..................................................................................................................................................................................................................................... 19 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GGACAGGGAAGACCATGGA....................................................................................................................................................................................................... 19 1 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TTGACTGGACAGGGAAGACCATGT........................................................................................................................................................................................................ 24 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GGACAGGGAAGACCATGT........................................................................................................................................................................................................ 18 1 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGACTGGACAGGGAAGACCATGT........................................................................................................................................................................................................ 23 1 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TACCGATGAGGGTGAATTTG............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....GGGCTATACCGATGAGGGTG................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGGGCTATACCGATGAGG...................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCTATACCGATGAGGGTGAAT................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGACAATCACCTGAGCCGAATT............... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CTGATCACTATGTGGCTCTTTTACTATA............................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....GGGCTATACCGATGAGGGTGAAT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTAAGGGCTATACCGATGAGGGTGA.................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................GGACAGGGAAGACCATGG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TTGACTGGACAGGGAAGACCA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATTTGACTGGACAGGGAAGACCATGT........................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................GACTGGACAGGGAAGACC............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TTGACTGGACAGGGAAGACC............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGAGGGTGAATTTGACTGGAC...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AATTTGACTGGACAGGGAAGACCA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTAAGGGCTATACCGATGAGGGT.................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GGACAGGGAAGACCATGTC....................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGGACAGGGATGACCATG......................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................TTGACTGGACAGGGAAGACCAT.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATTGACAATCACCTGAGCCGAAT................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GACTGGACAGGGAAGACCATGT........................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GAATTTGACTGGACAGGGAAGAC............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTGAATTTGACTGGACAGGGAAGACC............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTGAATTTGACTGGACAG.................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATCTATATATGAAATGGAT................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGTGAATTTGACTGGACAGGG.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTCATTGACAATCACCTGAGC..................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGCCGAATTCTGAACTCACATTC. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATATATGAAATGGATATTCGCATTCT........................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............ATAACGGTGAATTTGACTCG........................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATACATATACATATACATAT...................................................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATACATATACATATGCATATACATA........................................................................................... 26 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................ATACATATACACATACATATGC.................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................ATTGTATGGATATACAGAC...................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACATAAGCGTATACATATATAT...................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................ACGATGATCACTAGGTGTC........................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AATACATAAGCGTATACATATATAT...................................................................................... 25 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TATACATATACATACATATA................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CATTCCCGATATGGCTACTCCCACTTAAACTGACCTGTCCCTTCTGGTACCATCCATTGTTCAATTTTGCATTTTAGCTATGCGACTAGTGATACACCGAGAAAATGATATTGATAACATATGTATATGTATGTATATGTATATGTATACGTATATGTATATATACATGTATATAATTACATAGATATATACTTTACCTATAAGCGTAAGAGTAACTGTTAGTGGACTCGGCTTAAGATTTGAGTGTAAAT
***************************************************..........(((((........))))).....((((((..((((......))))..)))))).((.(((...((((((((.((((((......)))))).))))))))..))).))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060673
9_ovaries_total
...........................................................................ACCTATGCTACTAGTGAAACACC......................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................TGTATACGTATATGTATATATA...................................................................................... 22 0 9 0.56 5 0 3 1 0 1 0
....................................................................................................................................................ACGTATATGTATATATACAT................................................................................... 20 0 8 0.13 1 0 1 0 0 0 0
......................................................................................................................................................................................................TGAAAGCGTAAGAATAACTGT................................ 21 3 9 0.11 1 0 0 0 1 0 0
................................................................................................................................................GTATACGTATATGTATATATA...................................................................................... 21 0 11 0.09 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:1738513-1738763 + dvi_15179 GTAAGGGCTATACCGATGAGGGT-GAATTTGACTGGACAGGGAAGACC-ATGGTAGGT-----------------AAC-AAGTTAAAACGTAAAATCGATAC-------GCTGATCACTATGT-------------------------------------------------------------G----------------------------------------------------------------GCTCTTT-----------TACTATAA--------------------------------------------CTATTGTATACATA----TACA--TA--------------------CATATACA----T----------A------TACATATGCA--T----ATACATAT--ATAT--GTAC----------------ATA--------TA-----------TT----AATGTAT--CTATATA--TGA-----A---------A-----------------TGGAT---------AT-TCGCATTC------------------TCAT---------TGACAA---TCACCTG--AGCCGAATTCTAAACTCACATTTA
droMoj3 scaffold_6540:15441116-15441310 - GTAAGGGCTATACCGACGAGGGC-GAATTTGACTGGACAGGGAAAACC-ATGGTGGGT-----------------AGC-AAGTTGAAATTTATTAC-----C-------------------G------------------AT--------------------TAACAATGA----T------------------------------------AATCACCG-----------------------------------------------------------------CAA------------------------GATCC-A-TATTGAAAATATG----TGCA--------------------------------------------------------T---------------------------------------------------------------------------------------------ATT--TGA-----A---------A-----------------TTGAT---------AATTCACATTT------------------GCCA----TT---TAACAAAATTCATCTGCGAGCCGAATTCTAAACTC--ATCTA
droGri2 scaffold_14906:12554792-12555003 + GTAAGGGCTACACCGACGAGGGC-GAGTTCGACTGGACAGGGAAGACA-ATGGTAGGT-----------------AACCCAGTTGAAAC------------T-------------------G------------------AT--------------------GAAC---AGACAAA------------------------------------AATCAACGCGTCTCGATGCTATTATTATTATTGT-------------------TATT--ATTA------------------------------------------------CG--------ATAA--C----A------------------TACAA----A--CACACACA--------------T---------------------------------------------------------------------------------------------TTG--TCA-----A---------A-----------------TGGAT---------AA-TCACATTC------------------GAAA----T-------CA---TGCATCTG--TGCCGAATTCTAAATTCATATCTA
droWil2 scf2_1100000004943:5553101-5553285 - GTAAAAAAAATACAAAATATGCA-TAATTAAAAGGAAAAATGCAAAAC-GGCGTAGTT-----------------AAT-AAAACGCGAGTGCATCA----AT-------A------------------------------A-TTGCCAT--------------------AATCT----------------------------------------------------------------------------------------------------------CTCCTCAA------------------------CATAC-A-TA-TATATAAATA----TTC--------------------------------ATACATATATATATG----------TA--------TATAT----------ATAT--ATATATACATA----TATATATA--------TA-----------TA----CATATAT--A------------------------------------------------------------------TTT------------------ATA---------------------------------------------------A
dp5 XL_group3b:258285-258465 + AGGGCG------------AAAGT----TTCGTCTGAAAAGGAGCGCCCAATAATAAAAAGGAAGTTTTTATCAGAA------------AGTCAAATGGAAAT-------G------------------------------C-ATGGCGT--------------------GAGTCAC---------AC---------------------------TCTGC------------------------------------------------------------------------G--------------------TATAT----C-TATGTACATA----TAC--------------------------------ATACATATACATATA----------CA--------TATAT----------TTAT--CTTTACATATA----CATACATA--------TA-----------TT----TATATTT--A------------------------------------------------------------------TAT------------------TTA---------------------------------------------------T
droPer2 scaffold_21:1464490-1464670 + TTAACT----------------------------TGAACGGGAAAACA-ATTAAAGCT-----------------AAT-GAAA-GGAGAGTAAAAT-----TGCAGC--GCGAAA--GAGTTG------------------------------------------------------------------------------------------------------------------------TAGC--AGGAATC--------TAATAAA--------------------------------------------ACAAATATTATATATATA----TATA--TA--------------------TATATATA----T----------A------TATATATATA--C----ATACAT----ATA------------------TA----TA----------TGATA-T---ATATACAACTATAT--ATATTTT--T-----------------------------------------------------CAAAAGT------------------ATG---------------------------------------------------T
droAna3 scaffold_12903:223608-223752 + CAAATGCAA------------------------------------------------------------------------------CAACAA---------------------------------------------------AACCA--------------------------ACATCACTGAGCTTTGTA-----------------------------------TGTA-------------------TTTCTGAGCGCTCTAACCAA--------------------------------------------AC-----------ATATA------CATAAA--------------------TACAT--A--TAT----------A--------AATATGTATAT----ATA--TAT--ATATGTGTGT------A----T----GTG--------TA-----------TA----TATAT---------------------AATATATGTAG-----------------TGGAA----------------------------------------A--------------------------------------------------CT
droBip1 scf7180000395977:9132-9303 - ATGAGAGCTATAC--ATGAAAGC-TATTTT---T-----GGCAAAATA-ATAT------------------------------------------------TAC---GT----AC--CAAATTTATAGGGATC------------------------------------------------------------------------GGCC--------------------------G---------ACTATATCTTA-----------T---ATAA-----------TAAT---------------------------CT------TACATATA------CATATA--------------------TATAT--A--TAT----------ATATATATATA--------T----ATA--TAT--ATATATATA------------------TA--------TAGTACAATATAAT------------------AAA--TAT-----A------------------------------------------------ATAC------------------ATA---------------------------------------------------T
droKik1 scf7180000302696:811756-811931 - AACAAATTTAA----------------------------------------------------------------------------CATTAT-------------------------------------------ATGC--------A--------------------------TGCTCGTTACGTTTGACTTGATTTGGATTTTGCTAGCTGCAA-------------------------------------------------------ATAT-------------CAA--------------------TATAT----A-TATATACATA----TAC--------------------------------ATACATATATATATA----------TA----------TCAA----T----AT----ATATATATACATATACA----TACATACATATA-----------TA----TATATAT--A----------TATATAT---------------------------------------CAAT-ATCAATCA--------------------A-------------------------------------------------TTG
droFic1 scf7180000454040:238146-238283 + GTAAGGTCGTTT-----------------------------------------------------------------------------------------CGC---TC----CC--CAATAT------------------------------------------------------------------------------------------------------------TGTTG---------GCCTTTTCTTC-----------T---ACTA-----------TAGG---------------------------AA------TACATATA------TGCATG--------------------TAC----ATATGT----------ATACATACGTC--------C----ATAAAC----GTATATGTA------------CA----TA----------TTATC-T---ATA------------------------AAAAAAT-----------------------------------------GT-TTACATCC------------------ACA-------------------------------------------------TTG
droEle1 scf7180000491193:54336-54515 - GAAAACTCTGG---------------------CG---------------------GCC-----------------A-T-AA--AAAAGGATAAAAGCGAAAC-------ACAGGGTACAATGT-------------------------------------------------------------G-----------------------------------------------GCTG---------ATG----CCTT-----------T--------------GGGTTAAG----------------------CACAT-A-TA-TATACACATA----TAT--------------------------------A--TACAGATATATA----------TA--------TATATA----T----AT----ATCTATATACA----ACTAGATA--------TA-----------TC----TGTGTGT--GTATGTG--CCTCAAG-G---------------------------------------ACAT-TTCCACTT------------------GCA---------------------------------------------------T
droRho1 scf7180000776638:16511-16639 + ATTATATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--------TAAT----A--T-------------ACATATACATATACATATACATATACAT-A-TA-CA--------TATA------------------------------------------------------------C----------ATATA----C--AT------ATACATATACATATACA----TATACATATAC-------------------------ATATACATATA--CATATAC---------------------------------------ATAT-ACATATAC------------------ATA---------------------------------------------------T
droBia1 scf7180000298858:2780-2915 + AAATTA-------------------------------------------------------------------------------AAAAATATCA------------------------------------------------------------------------------------------------------------------------------------ATAAT-TTATTATTATTATT--ATTATTA--------TAATATA--------------------------------------------ACATCTACTATATATATA----TATA--TA--------------------TATATATA----T----------A------TATATACACA--T----ATATAC----ATATATGTACGC----A----TATA------------C-----------AT------------------ATA--TAA-----A---------A-----------------TAAAT----------------------------------------A--------------------------------------------------TT
droTak1 scf7180000411343:21714-21840 - TATATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATGTAT--------------------------------ATATAT----ATATG----------TA--------TATAT----------ATAT--ATGTATATATA----TATATGTA--------TA-----------TA----TATATATGTATATATA--CATATAT-GATTTTTATAGCAAACGTTTGAAAAGCATACTT----------------------------------------G--------------------------------------------------TT
droEug1 scf7180000409752:791160-791336 - CTGCTG------------AGAGT-AAT-TTCAATGGTAAGTCAAAAAC-ATAT------------------------------------------------CTT---GT----AT--TA-------------------------AATCGGAGGTAAAGAAAGCAAT---AAACTAA------------------------------------ACTAAATTGGTTT------------------------------------------------------------CG----A--------------------TGTAT-T-TA-TTTTCATATA----TAT--------------------------------A--TATATATATATATG--------TA--------TATAT----------ATAT--ATATATATATA----TATATATA--------TA-----------TG----TATTTAT--T------------------------------------------------------------------TAT------------------ATA---------------------------------------------------T
dm3 chrU:6539654-6539855 - CAGACGGCTAAGCCAGATGACGCTGGCTAGAACT-AGC----ACGATA------------------------------------------------------AG---GA----AG--TAGCTGAAGAGGGATC-----------CCAAT--------------------AGGAA-----------CCTTTATA-------------------TATGT-----------------------------------AT------------AT----A--T-------------GTATATATGTATATATGTATATATGTAT-A-TA-TG--------TATA------------------------------------------------------------T----------ATGTA----T--AT------ATGTATATATGTATATA----TGTATATATGT-------------------------ATATATGTATA--TATGTAT---------------------------------------ATAT-GTATATAT------------------GTA---------------------------------------------------T
droSim2 x:14968001-14968158 + CAAGTCA------------------------------------------------------------------------------AAAAGTATAT------TTT---CT----TT--TA-------------------------AATTG--------------------------ACATTAAACC----------------------------------------------------------------GCTTTTT-----------TGCCACAA--------------------------------------------CAACCCTAAATATA------TCTATA--------------------TACAT--A--TAC----------A------CATATATATA--A----ATATAT----ATATATGTAA------A----AA----TA--------T-----------AT------------------ATA--CGA-----A---------A-----------------TACGTGTTTCCAATAT-TTTTATGT------------------ACA--------------------------------------------------AT
droSec2 scaffold_0:16589188-16589327 + AATGAGCTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAACAAACAGCAACATTAAATTAA-----------------------------------------------GT----A--TACATCTCCATTA------------------------TATAT-A-TA-TATATATATA----TAT--------------------------------ATATACATATGTATA----------TA--------TATAT----------ATAT--ATATATATATA----TATACATA--------TA-----------TA----TATATAT--A------------------------------------------------------------------TAT------------------ATA---------------------------------------------------T
droYak3 3L:19816986-19817219 + AATTTG-------------------------ACTGAAAAGAGAATACA-ACGGAAA--------ATTAGAGTACAC-------------------------T-------------------GT----------CGTATGC----AGAAA--------------------------TATTTGTTGTGCCTTGCA-----------------------------------TATTATTATTATTTTTTT-------------------TACC--AATA-----------------------------------------------------TTAAG------TCTTAGCTGACTTGAGTAAATATATACATA------CATATATG--------------CATGCA----A----------------------------------------ATA--------TA-------------------ATTAC--T---------------------------------------------------------GAA-G---ATCAATTAAATTGCTCGATTTTGAAAATCTTCGAATAATAG---TCACC------TCAAATACAAAAATTGTACTTA
droEre2 scaffold_4929:21197034-21197192 - TAATAATT-------------------------------GGTAAATTT--------------------------------------------ATA-------------------------------------------------------------------------------------------------TCGATATACATATCGATATTTATTTAC-----------------------------------------------AT----A--T-------------ACATATACATATACATATACATATACAT-A-TA-CA--------TATA------------------------------------------------------------C----------ATATA----C--AT------ATACATATACATATACA----TATACATATAC-------------------------ATATACATATA--CATATAC---------------------------------------ATAT-ACATATAC------------------ATA---------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTAAGGGCTATACCGATGAGGGT-GAATTTGACTGGACAGGGAAGACC-ATGGTAGGT-----------------AAC-AAGTTAAAACGTAAAATCGATAC-------GCTGATCACTATGT-------------------------------------------------------------G----------------------------------------------------------------GCTCTTT-----------TACTATAA--------------------------------------------CTATTGTATACATA----TACA--TA--------------------CATATACA----T----------A------TACATATGCA--T----ATACATAT--ATAT--GTAC----------------ATA--------TA-----------TT----AATGTAT--CTATATA--TGA-----A---------A-----------------TGGAT---------AT-TCGCATTC------------------TCAT---------TGACAA---TCACCTG--AGCCGAATTCTAAACTCACATTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AGGGCTATACCGATGAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000010000000000001000000000000000000000000000000000000000000
..................................GGACAGGGAAGACC-ATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000011000000000000000000000000000000000
............................TTGACTGGACAGGGAAGACC-ATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002001000000000000000000000000000000000000000000000000000000000010
..................................GGACAGGGAAGACC-ATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000010000000000000001000000000000000000000000000000000
.............................TGACTGGACAGGGAAGACC-ATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000010010000000000000000000000000000000000000000000000000
..........TACCGATGAGGGT-GAATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
....GGGCTATACCGATGAGGGT-G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...AGGGCTATACCGATGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
......GCTATACCGATGAGGGT-GAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAA---TCACCTG--AGCCGAATT...............2211.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................CTGATCACTATGT-------------------------------------------------------------G----------------------------------------------------------------GCTCTTT-----------TACTATA....................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000100000
....GGGCTATACCGATGAGGGT-GAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
GTAAGGGCTATACCGATGAGGGT-GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000001000000000000000000000000000000000000000000000000000000
..................................GGACAGGGAAGACC-ATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
............................TTGACTGGACAGGGAAGACC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
..........................ATTTGACTGGACAGGGAAGACC-ATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
..............................GACTGGACAGGGAAGACC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
............................TTGACTGGACAGGGAAGACC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
................TGAGGGT-GAATTTGACTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
.........................AATTTGACTGGACAGGGAAGACC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
GTAAGGGCTATACCGATGAGGGT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
..................................GGACAGGGAAGACC-ATGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
............................TTGACTGGACAGGGAAGACC-AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT---------TGACAA---TCACCTG--AGCCGAAT................2411.001000000000000001000000000000000000000000000000000000000000000000
..............................GACTGGACAGGGAAGACC-ATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
........................GAATTTGACTGGACAGGGAAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
.....................GT-GAATTTGACTGGACAGGGAAGACC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.....................GT-GAATTTGACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--CTATATA--TGA-----A---------A-----------------TGGAT---------....................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................GGT-GAATTTGACTGGACAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------TCAT---------TGACAA---TCACCTG--AGC.....................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA--TGA-----A---------A-----------------TGGAT---------AT-TCGCATTC------------------T......................................................2611.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................A--TA--------------------CATATACA----T----------A------TACATAT....................................................................................................................................................................................................................................20200.102000000000000002000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATACA----T----------A------TACATATGCA--T----ATACATA...................................................................................................................................................................................................................26110.091000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TATACATA----TACA--TA--------------------CATATA...................................................................................................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
droMoj3
GTAAGGGCTATACCGACGAGGGC-GAATTTGACTGGACAGGGAAAACC-ATGGTGGGT-----------------AGC-AAGTTGAAATTTATTAC-----C-------------------G------------------AT--------------------TAACAATGA----T------------------------------------AATCACCG-----------------------------------------------------------------CAA------------------------GATCC-A-TATTGAAAATATG----TGCA--------------------------------------------------------T---------------------------------------------------------------------------------------------ATT--TGA-----A---------A-----------------TTGAT---------AATTCACATTT------------------GCCA----TT---TAACAAAATTCATCTGCGAGCCGAATTCTAAACTC--ATCTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
GTAAGGGCTATACCGACGAGGGC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
.................................TGGACAGGGAAAACC-ATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................C-GAATTTGACTGGACAGGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....GGCTATACCGACGAGGGC-GAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............................TTGACTGGACAGGGAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
GTAAGGGCTACACCGACGAGGGC-GAGTTCGACTGGACAGGGAAGACA-ATGGTAGGT-----------------AACCCAGTTGAAAC------------T-------------------G------------------AT--------------------GAAC---AGACAAA------------------------------------AATCAACGCGTCTCGATGCTATTATTATTATTGT-------------------TATT--ATTA------------------------------------------------CG--------ATAA--C----A------------------TACAA----A--CACACACA--------------T---------------------------------------------------------------------------------------------TTG--TCA-----A---------A-----------------TGGAT---------AA-TCACATTC------------------GAAA----T-------CA---TGCATCTG--TGCCGAATTCTAAATTCATATCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................TGGACAGGGAAGACA-ATGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
...........ACCGACGAGGGC-GAGTTCGACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..............................GACTGGACAGGGAAGACA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..............GACGAGGGC-GAGTTCGACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droWil2
GTAAAAAAAATACAAAATATGCA-TAATTAAAAGGAAAAATGCAAAAC-GGCGTAGTT-----------------AAT-AAAACGCGAGTGCATCA----AT-------A------------------------------A-TTGCCAT--------------------AATCT----------------------------------------------------------------------------------------------------------CTCCTCAA------------------------CATAC-A-TA-TATATAAATA----TTC--------------------------------ATACATATATATATG----------TA--------TATAT----------ATAT--ATATATACATA----TATATATA--------TA-----------TA----CATATAT--A------------------------------------------------------------------TTT------------------ATA---------------------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AGGGCG------------AAAGT----TTCGTCTGAAAAGGAGCGCCCAATAATAAAAAGGAAGTTTTTATCAGAA------------AGTCAAATGGAAAT-------G------------------------------C-ATGGCGT--------------------GAGTCAC---------AC---------------------------TCTGC------------------------------------------------------------------------G--------------------TATAT----C-TATGTACATA----TAC--------------------------------ATACATATACATATA----------CA--------TATAT----------TTAT--CTTTACATATA----CATACATA--------TA-----------TT----TATATTT--A------------------------------------------------------------------TAT------------------TTA---------------------------------------------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTAACT----------------------------TGAACGGGAAAACA-ATTAAAGCT-----------------AAT-GAAA-GGAGAGTAAAAT-----TGCAGC--GCGAAA--GAGTTG------------------------------------------------------------------------------------------------------------------------TAGC--AGGAATC--------TAATAAA--------------------------------------------ACAAATATTATATATATA----TATA--TA--------------------TATATATA----T----------A------TATATATATA--C----ATACAT----ATA------------------TA----TA----------TGATA-T---ATATACAACTATAT--ATATTTT--T-----------------------------------------------------CAAAAGT------------------ATG---------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................AAAAT-----TGCAGC--GCGAAA--GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................AAAT-----TGCAGC--GCGAAA--GAGTTG------------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................A------TATATATATA--C----ATACAT----A...............................................................................................................................................................................................................19200.051001000
droAna3
CAAATGCAA------------------------------------------------------------------------------CAACAA---------------------------------------------------AACCA--------------------------ACATCACTGAGCTTTGTA-----------------------------------TGTA-------------------TTTCTGAGCGCTCTAACCAA--------------------------------------------AC-----------ATATA------CATAAA--------------------TACAT--A--TAT----------A--------AATATGTATAT----ATA--TAT--ATATGTGTGT------A----T----GTG--------TA-----------TA----TATAT---------------------AATATATGTAG-----------------TGGAA----------------------------------------A--------------------------------------------------CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATGAGAGCTATAC--ATGAAAGC-TATTTT---T-----GGCAAAATA-ATAT------------------------------------------------TAC---GT----AC--CAAATTTATAGGGATC------------------------------------------------------------------------GGCC--------------------------G---------ACTATATCTTA-----------T---ATAA-----------TAAT---------------------------CT------TACATATA------CATATA--------------------TATAT--A--TAT----------ATATATATATA--------T----ATA--TAT--ATATATATA------------------TA--------TAGTACAATATAAT------------------AAA--TAT-----A------------------------------------------------ATAC------------------ATA---------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
AACAAATTTAA----------------------------------------------------------------------------CATTAT-------------------------------------------ATGC--------A--------------------------TGCTCGTTACGTTTGACTTGATTTGGATTTTGCTAGCTGCAA-------------------------------------------------------ATAT-------------CAA--------------------TATAT----A-TATATACATA----TAC--------------------------------ATACATATATATATA----------TA----------TCAA----T----AT----ATATATATACATATACA----TACATACATATA-----------TA----TATATAT--A----------TATATAT---------------------------------------CAAT-ATCAATCA--------------------A-------------------------------------------------TTGSizeHit CountTotal NormTotal
No Reads
droFic1
GTAAGGTCGTTT-----------------------------------------------------------------------------------------CGC---TC----CC--CAATAT------------------------------------------------------------------------------------------------------------TGTTG---------GCCTTTTCTTC-----------T---ACTA-----------TAGG---------------------------AA------TACATATA------TGCATG--------------------TAC----ATATGT----------ATACATACGTC--------C----ATAAAC----GTATATGTA------------CA----TA----------TTATC-T---ATA------------------------AAAAAAT-----------------------------------------GT-TTACATCC------------------ACA-------------------------------------------------TTGSizeHit CountTotal NormTotal
No Reads
droEle1
GAAAACTCTGG---------------------CG---------------------GCC-----------------A-T-AA--AAAAGGATAAAAGCGAAAC-------ACAGGGTACAATGT-------------------------------------------------------------G-----------------------------------------------GCTG---------ATG----CCTT-----------T--------------GGGTTAAG----------------------CACAT-A-TA-TATACACATA----TAT--------------------------------A--TACAGATATATA----------TA--------TATATA----T----AT----ATCTATATACA----ACTAGATA--------TA-----------TC----TGTGTGT--GTATGTG--CCTCAAG-G---------------------------------------ACAT-TTCCACTT------------------GCA---------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
ATTATATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--------TAAT----A--T-------------ACATATACATATACATATACATATACAT-A-TA-CA--------TATA------------------------------------------------------------C----------ATATA----C--AT------ATACATATACATATACA----TATACATATAC-------------------------ATATACATATA--CATATAC---------------------------------------ATAT-ACATATAC------------------ATA---------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
AAATTA-------------------------------------------------------------------------------AAAAATATCA------------------------------------------------------------------------------------------------------------------------------------ATAAT-TTATTATTATTATT--ATTATTA--------TAATATA--------------------------------------------ACATCTACTATATATATA----TATA--TA--------------------TATATATA----T----------A------TATATACACA--T----ATATAC----ATATATGTACGC----A----TATA------------C-----------AT------------------ATA--TAA-----A---------A-----------------TAAAT----------------------------------------A--------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
TATATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATGTAT--------------------------------ATATAT----ATATG----------TA--------TATAT----------ATAT--ATGTATATATA----TATATGTA--------TA-----------TA----TATATATGTATATATA--CATATAT-GATTTTTATAGCAAACGTTTGAAAAGCATACTT----------------------------------------G--------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droEug1
CTGCTG------------AGAGT-AAT-TTCAATGGTAAGTCAAAAAC-ATAT------------------------------------------------CTT---GT----AT--TA-------------------------AATCGGAGGTAAAGAAAGCAAT---AAACTAA------------------------------------ACTAAATTGGTTT------------------------------------------------------------CG----A--------------------TGTAT-T-TA-TTTTCATATA----TAT--------------------------------A--TATATATATATATG--------TA--------TATAT----------ATAT--ATATATATATA----TATATATA--------TA-----------TG----TATTTAT--T------------------------------------------------------------------TAT------------------ATA---------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
CAGACGGCTAAGCCAGATGACGCTGGCTAGAACT-AGC----ACGATA------------------------------------------------------AG---GA----AG--TAGCTGAAGAGGGATC-----------CCAAT--------------------AGGAA-----------CCTTTATA-------------------TATGT-----------------------------------AT------------AT----A--T-------------GTATATATGTATATATGTATATATGTAT-A-TA-TG--------TATA------------------------------------------------------------T----------ATGTA----T--AT------ATGTATATATGTATATA----TGTATATATGT-------------------------ATATATGTATA--TATGTAT---------------------------------------ATAT-GTATATAT------------------GTA---------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............GATGACGCTGGCTAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TAGAACT-AGC----ACGATA------------------------------------------------------AG---GA----AG--TAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CTGAAGAGGGATC-----------CCAAT--------------------AGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGAAGAGGGATC-----------CCAAT--------------------AGGAA-----------CCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.6720000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GAGGGATC-----------CCAAT--------------------AGGAA-----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AAGAGGGATC-----------CCAAT--------------------AGGAA-----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GCTGAAGAGGGATC-----------CCAAT--------------------AGGAA-----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AG--TAGCTGAAGAGGGATC-----------CCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................G--TAGCTGAAGAGGGATC-----------CCAAT--------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGAAGAGGGATC-----------CCAAT--------------------AGGAA-----------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GAGGGATC-----------CCAAT--------------------AGGAA-----------CCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AGAACT-AGC----ACGATA------------------------------------------------------AA---T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AGGGATC-----------CCAAT--------------------AGGAA-----------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GACGGCTAAGCCAGATGACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GACGGCTAAGCCAGATGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATA--TATGTAT---------------------------------------ATAT-GT...............................................................................21200.0510000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................T----------ATGTA----T--AT------ATGTATATATGTA.............................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TATGTATATATGTAT-A-TA-TG--------.........................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGT-------------------------ATATATGTATA--TATGT...............................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTATATA----TGTATA...............................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAGTCA------------------------------------------------------------------------------AAAAGTATAT------TTT---CT----TT--TA-------------------------AATTG--------------------------ACATTAAACC----------------------------------------------------------------GCTTTTT-----------TGCCACAA--------------------------------------------CAACCCTAAATATA------TCTATA--------------------TACAT--A--TAC----------A------CATATATATA--A----ATATAT----ATATATGTAA------A----AA----TA--------T-----------AT------------------ATA--CGA-----A---------A-----------------TACGTGTTTCCAATAT-TTTTATGT------------------ACA--------------------------------------------------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AATGAGCTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAACAAACAGCAACATTAAATTAA-----------------------------------------------GT----A--TACATCTCCATTA------------------------TATAT-A-TA-TATATATATA----TAT--------------------------------ATATACATATGTATA----------TA--------TATAT----------ATAT--ATATATATATA----TATACATA--------TA-----------TA----TATATAT--A------------------------------------------------------------------TAT------------------ATA---------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AATTTG-------------------------ACTGAAAAGAGAATACA-ACGGAAA--------ATTAGAGTACAC-------------------------T-------------------GT----------CGTATGC----AGAAA--------------------------TATTTGTTGTGCCTTGCA-----------------------------------TATTATTATTATTTTTTT-------------------TACC--AATA-----------------------------------------------------TTAAG------TCTTAGCTGACTTGAGTAAATATATACATA------CATATATG--------------CATGCA----A----------------------------------------ATA--------TA-------------------ATTAC--T---------------------------------------------------------GAA-G---ATCAATTAAATTGCTCGATTTTGAAAATCTTCGAATAATAG---TCACC------TCAAATACAAAAATTGTACTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAATAATT-------------------------------GGTAAATTT--------------------------------------------ATA-------------------------------------------------------------------------------------------------TCGATATACATATCGATATTTATTTAC-----------------------------------------------AT----A--T-------------ACATATACATATACATATACATATACAT-A-TA-CA--------TATA------------------------------------------------------------C----------ATATA----C--AT------ATACATATACATATACA----TATACATATAC-------------------------ATATACATATA--CATATAC---------------------------------------ATAT-ACATATAC------------------ATA---------------------------------------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATAC-------------------------ATATACATAT.......................................................................................................................................20200.0511000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACA----TATACATATAC-------------------------ATAT.............................................................................................................................................20200.0511000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATA----C--AT------ATACATATACATAT............................................................................................................................................................................................20200.0511000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATACATATACA----TAT..................................................................................................................................................................................20200.0511000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATACA----TATACATAT............................................................................................................................................................................20200.0511000000

Generated: 05/16/2015 at 08:46 PM