ID:

dvi_15171

 Coordinate:

scaffold_13047:1733020-1733170 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.45 -5.35 -5.15 -5.07

Flybase annnotation

CDS [Dvir\GJ23721-cds]; exon [dvir_GLEANR_9052:3]; intron [Dvir\GJ23721-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_2826:792-818 +
  2. scaffold_4692:1063-1089 +
  3. scaffold_8775:2582-2608 +
  4. scaffold_12002:2836-2862 +
  5. scaffold_12855:5981064-5981090 +
  6. scaffold_12932:1733941-1733967 +
  7. scaffold_12932:1734004-1734030 +
  8. scaffold_12932:1734096-1734122 +
  9. scaffold_12963:7736239-7736265 +
  10. scaffold_12963:7736327-7736353 +
  11. scaffold_12963:7736420-7736446 +
  12. scaffold_13049:1207846-1207872 +
  13. scaffold_13049:14296721-14296747 +
  14. scaffold_214:299-325 +
  15. scaffold_10324:141698-141724 +
  16. scaffold_12822:409846-409872 +
  17. dvi_3790  scaffold_12855:3915283-3915309 +
  18. scaffold_12875:3438055-3438081 +
  19. scaffold_12875:3879715-3879741 +
  20. scaffold_12928:518679-518705 +
  21. scaffold_12928:2681079-2681105 +
  22. scaffold_12943:194555-194581 +
  23. scaffold_12970:4112334-4112360 +
  24. dvi_14748  scaffold_13042:4303438-4303464 +
  25. dvi_15171  scaffold_13047:1733130-1733156 +
  26. scaffold_13047:4439127-4439153 +
  27. scaffold_13047:11660397-11660423 +
  28. scaffold_13049:78458-78484 +
  29. scaffold_13049:15116233-15116259 +
  30. scaffold_13049:18832163-18832189 +
  31. scaffold_13132:1994-2020 +
  32. scaffold_13246:100665-100691 +
  33. scaffold_13305:5926-5952 +
  34. scaffold_25:526-552 +
  35. scaffold_3000:1264-1290 +
  36. scaffold_3000:1395-1421 +
  37. scaffold_12410:1193-1219 +
  38. scaffold_12528:46054-46080 +
  39. scaffold_12823:1622112-1622138 +
  40. scaffold_12963:8212140-8212166 +
  41. scaffold_12970:1355571-1355597 +
  42. scaffold_13049:14296777-14296803 +
  43. scaffold_13049:14296849-14296875 +
  44. scaffold_12723:3659778-3659804 +
  45. scaffold_12963:7736447-7736473 +
  46. scaffold_4353:1622-1648 -
  47. scaffold_5385:29-55 -
  48. scaffold_6142:946-972 -
  49. scaffold_8078:402-428 -
  50. scaffold_9568:73-99 -
  51. scaffold_10316:1120-1146 -
  52. scaffold_12723:1786785-1786811 -
  53. scaffold_12741:47895-47921 -
  54. scaffold_12788:49498-49524 -
  55. scaffold_12823:199524-199550 -
  56. scaffold_12963:19383412-19383438 -
  57. scaffold_12967:787959-787985 -
  58. scaffold_12970:5793843-5793869 -
  59. scaffold_13047:3482389-3482415 -
  60. scaffold_13047:6339540-6339566 -
  61. scaffold_13047:9074111-9074137 -
  62. scaffold_13049:1368897-1368923 -
  63. scaffold_13049:2755040-2755066 -
  64. scaffold_13049:22360993-22361019 -
  65. scaffold_13049:24338003-24338029 -
  66. scaffold_3000:1121-1147 +
  67. scaffold_12963:7736496-7736522 +
  68. scaffold_12963:8211898-8211924 +
  69. scaffold_13049:14296671-14296697 +
  70. scaffold_12875:15313370-15313396 +
  71. scaffold_12875:19751713-19751739 +
  72. scaffold_12928:3190259-3190285 +
  73. scaffold_12963:7736101-7736127 +
  74. scaffold_13042:5120466-5120492 +
  75. dvi_24245  scaffold_2826:679-705 +
  76. scaffold_7535:5325-5351 +
  77. scaffold_8468:1063-1089 +
  78. scaffold_8775:2519-2545 +
  79. scaffold_9469:7496-7522 +
  80. scaffold_9909:6898-6924 +
  81. scaffold_12932:1734137-1734163 +
  82. scaffold_12963:8212212-8212238 +
  83. scaffold_13049:1207792-1207818 +
  84. scaffold_13049:23289319-23289345 +
  85. scaffold_1730:11-37 -
  86. scaffold_2338:1-27 -
  87. scaffold_2379:17-43 -
  88. scaffold_3056:210-236 -
  89. scaffold_3063:570-596 -
  90. scaffold_6379:54-80 -
  91. scaffold_6524:999-1025 -
  92. scaffold_6664:130-156 -
  93. scaffold_7844:39-65 -
  94. scaffold_9427:72-98 -
  95. scaffold_12856:42682-42708 -
  96. scaffold_12875:6151936-6151962 -
  97. scaffold_12970:3894821-3894847 -
  98. scaffold_13047:10470866-10470892 -
  99. scaffold_13049:1368623-1368649 -
  100. scaffold_13049:1368714-1368740 -
  101. scaffold_13213:1109-1135 -
  102. scaffold_4353:1165-1191 -
  103. scaffold_6664:36-62 -
  104. scaffold_7671:6-32 -
  105. scaffold_8754:439-465 -
  106. scaffold_9826:10-36 -
  107. scaffold_12528:67376-67402 -
  108. scaffold_12723:3814123-3814149 -
  109. scaffold_12875:11957148-11957174 -
  110. scaffold_12928:2333539-2333565 -
  111. scaffold_12958:573157-573183 -
  112. scaffold_12958:579108-579134 -
  113. scaffold_12970:9144637-9144663 -
  114. scaffold_13049:1368843-1368869 -
  115. scaffold_13052:1895214-1895240 -
  116. scaffold_6888:3219-3245 +
  117. scaffold_7755:353-379 +
  118. scaffold_8645:1267-1293 +
  119. scaffold_8741:1345-1371 +
  120. scaffold_10142:469-495 +
  121. scaffold_10257:8643-8669 +
  122. scaffold_12841:44428-44454 +
  123. scaffold_12855:3138338-3138364 +
  124. scaffold_12928:3949641-3949667 +
  125. scaffold_12954:1742868-1742894 +
  126. scaffold_13052:131634-131660 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCGCAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTAAATTGTCTTTATTATAACACAGAATATACAACTTTTTCCATACCCCTATAAAACACTAACAGCAATAAAAACAACTAACAAAAAGAAATAGGTCATGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATAATGAAAATAAAAATAAATATATTATTTTTTTCCATGCCCGTTTGTCGTCCTTTTGACA
**************************************************............((.((((((((.....................................................................................................................)))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060667
160_females_carcasses_total
 V047
embryo
 GSM1528803
follicle cells		 SRR060663
160_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060655
9x160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................ 27 0 20 8.30 166 166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA...................................................................... 21 0 20 2.35 47 0 0 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CCGCAACTACACTTAGAGTATAG................................................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA.................................................................. 24 0 20 1.90 38 0 0 0 34 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
.CCGCAACTACACTTAGAGT....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAA............................................................ 36 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TATAAGCTATTAGGATCACAT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................AGCTATTAGGATCACATG......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGAGTATAGGTTTTATAAGCT....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TATAAGCTATTAGGATCACATGGTA...................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA.................................................................. 22 0 20 0.95 19 0 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA................................................................. 24 0 20 0.85 17 0 0 6 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA................................................................ 23 0 20 0.75 15 0 0 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAA.................................................................. 19 0 20 0.75 15 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAATAAAAAAAAAAAAAAACAA............................................................ 36 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAACAAAAGAAAAAAAAAAAAAAAAAAAAAAAACA............................................................. 36 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAACAAAAAAAAAAAAAAAAAAAAAAAAACAA............................................................ 36 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAACAAAAAAAAAAAAAAAAAAACAA............................................................ 36 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ACAAAAAAACAAAAAAAAAAAAAAAAAAAAACAACA.......................................................... 36 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAAGAAACAATAAAAAAGAAAAAAAAAAAAAAAAAA................................................................ 36 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAAATAGTTCCTGAAAC............................................................................................ 17 2 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAACAATAAG........................................................ 36 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGACAAAAAAAAAAAAAAACAAAAAAAAAAAAACAA............................................................ 36 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAGGAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................ 36 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAAAACAAAAAAAAACAAACAA............................................................ 36 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAAAAAAAAAAAA............................................................... 18 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................. 26 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAAAAAAACAAAAAAAACACAA............................................................ 36 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAACAAAAAAAACAAAAAACA............................................................. 35 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGGTCGTGAAAAAAAAAAAAAAAA................................................................................ 24 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACCAATGACA.................................................... 36 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TAACAAAAAAAAAAAAAAAAAAAAAAAAAAACACAA............................................................ 36 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAACA............................................................. 36 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAACACAAAAAAACAAAAAAACA............................................................. 35 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAA...................................................................... 25 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAATCAATAAAGAACA................................................... 36 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAACAACAAT........................................................ 36 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAA...................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACACAAAAAGAAAAAAAAAAAAAAAAAAAACCAA............................................................ 36 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CGAAACAAAAAAAAAAAAAAGAAAAAAAAAAAAAAG.............................................................. 36 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATGAAATAGATCCTGAAAC............................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................GGTGATGAGACATAAAAAAAA.................................................................................. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAACAAAAAACAAAAAAAACAACAA............................................................ 36 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CATGGCCGTTTTTAGTCCTT...... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAATAAACAAAAAAAAACAACAA............................................................ 36 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACAAAAAAACAAAAAAAAAAAAAACACAAAACAA............................................................ 35 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGAACGAAAAAAAAAAAAAAAAAAAAA...................................................................... 28 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAAACAAAAAAAAAAAAAA.............................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA....................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAA......................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAC.............................................................. 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAA.................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAACAAAAAAAAAAAAAAAAAAAA........................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................AAAAAAAAAAAAAAAGAAAAAAAAACCATAAG........................................................ 32 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAAAAAGAAGAAAAAAAAAACAATAAA........................................................ 36 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAGAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................... 36 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................AAACAAAAACAACAAAAAAAAAAAAAACAAAAACAA............................................................ 36 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAC.............................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGGCGTTGATGTGAATCTCATATCCAAAATATTCGATAATCCTAGTGTACCATACAATTTAACAGAAATAATATTGTGTCTTATATGTTGAAAAAGGTATGGGGATATTTTGTGATTGTCGTTATTTTTGTTGATTGTTTTTCTTTATCCAGTACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATTACTTTTATTTTTATTTATATAATAAAAAAAGGTACGGGCAAACAGCAGGAAAACTGT
**************************************************............((.((((((((.....................................................................................................................)))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 GSM1528803
follicle cells		 V047
embryo
..........................................................................TGTGTCTTATATGTTGAAAAAGGGAT....................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................ATCCAAAATACGCCATAATC.................................................................................................................................................................................................................. 20 3 7 0.57 4 0 1 1 1 1 0 0
................................................................................................................................................................................................TTACTTTTATTTTTATT.......................................... 17 0 20 0.10 2 0 0 0 0 0 2 0
.....................ATCCAAAATACGCCATAAT................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................................................................................GTACTGTGTTTTTATTTTTTTT.............................................................................. 22 2 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................ATTTGTTTTCTTTTTTTTTTTTTTTTTTTTTTTGG.............................................................. 35 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:1732970-1733220 + dvi_15171 TCCGCAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTAAATT--GT-----CT-TTATTATA-----------AC---ACAGAAT----------------ATACAAC-TTTTTCC-----------------------------------------------------------------ATAC------CCCTA------------TAAAACA------CTAACA---GC---------AATAAAAACAA-------CTAAC-AA--------------------------------------------AAAGAAATAGGTCATGAAACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAAAAACAATAATGA-AAATAAAAATAA--------------------------------------ATATAT-----TATTTTT---------------TTCCATGCCCGTTTGT-CGTCCTTTTGACA----------------------------
droMoj3 scaffold_6540:15446326-15446534 - dmo_1956 TCCACAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTAAAAT--GT-----TT-TTATTATA-TTTATTGAATAC---AC-------A-TAATATGCCAACCTCTAC--TC------------------------------------------------------------------------------CGTCCCG--------------TAAAA------TTGACT---AA---------CA--AAA-----------TAAAC-----------------------------------------------------------C-------------------------ATAAGACAAAAAAAAA-AAATCATTTACAAAACAT-------------------------------------------------------------------------------------------------ATATTT---------------TTCCATGCCCGTTTGT-CGATTTACTGACA----------------------------
droGri2 scaffold_14906:12549250-12549521 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTGAAT----T----GAA----TGTTT-----------CTATTAC------------------A-----TA-C-TTTCCCCCTACCC--------------------------------------------------------C--CCA---------CCAATTACCCCTTACTTAAACA------CTAACA---GC---------CA--TAA-----------CTAAC-AATCAAACATAATAAAATTTAAATCAGAAATATGATAATA-TATATATATATATATATATATATATATTTATA------------------------------------------------------------------------------------------------------------TATATATATATTTATATA--TATAT----------ATATTTATATATATATATATATTCCACGCCCGTTT------------GACG----------------------------
droWil2 scf2_1100000004954:3598088-3598286 + TTAT---------------TTCGATTTTTGCACGGCATTCGGAT----------------TT--------------------------------------------------------------------TATACAAAAGCCAAACAAAAC--------------------------------------------------AAA------------------------------G------CCAAC------AACAG----CA--AAAGCAACAAAAATTGAAT-TG-G-----------------------AACTAACCAAA-A-AAAAAAAAAAAAAATACAGAAAGACGGCCAAA-------------------------------------------AATGAAA-GGCGCAAAGCA---------------------------------------------------------GGAGCGA--------AAC-----TACCTCC---------------CT------------CC-CTGCCTGCTCGCATT-----GTGGC-CCTT---------TT
dp5 2:22496022-22496357 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTTAACTA--TT----AAT----TAA-----------A-----------------------TCCAACC------------------------TCAACACCTTAACACCCTAACAAACAAACACGAACCCCACTGAAACCCCGCCCCCAATGCCGTCGTCCTC------------TTTCGTA---------AT------ACTAA----TA--AAACCAACAGCAAATTAAC-AA-T-----------------------TACTAACCCCC-CCCCCCAAAAGAAATCCCTCAAGAAAGAGC------------------------------------CAAGCCAAAGAGGTACAG-ACTGTACGGCTGCACCGAAACGAATATGCCAGATAACACCAAGCACTCTTGCTCTACTACTTATCTCTCCCTCTA--TATAT----------ATATTT----------------------------------ATC----------------------------------TA
droPer2 scaffold_3:5276407-5276751 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTTAACTA--TT----TAT----TAA-----------A-----------------------TCCAACC------------------------TCAACACCTTAACACCCTAACAAGCAAACACAAGCCCCACTGAAACCCCGTCCCAAACGCCGTCGTCCTC------------TTTCGTA---------AT------ACTAA----TA--AAACCAACAGAAAACTAAC-AA-T-----------------------TACTAACCCCC-C-CCCCGAAAGAAATCCCTCAAGAAAGAGC------------------------------------CAAGCCAAAGAGGTACAG-ACTGTACGTCTGCACCGAAACGAATATGCCAGATAACACCAAGCACTCTTGCTCTACTACTTATCTCTCCCTCTA--TATAT----------CTATTT-----------------------------AT-CTATATAACTATA----------------------------
droAna3 scaffold_13340:15463705-15463974 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAAAAA--AA-ATCTCT----TAATGACTTAATGACTACT----AGTCCGAT-ATA---TC----C---CAC-T-TTTCC-----------------------------------------------------------------GAAGCTGTCGTCCTC------------TCTAACT------CGAATT------TTAACCAAAA---AA-----------CTAAC-CA-C-----------------------TACTAA-------------------------CCAG----------AGATC----TCTTCCTGGAAGAGGACC----------------------AATATGGAG--------------------TGCCAGTTTAT---TGGCACTTTT-----------------------GG--------TTCCGATCTAT---------------------------------AT-GTCCTTTGTCTCT--GTATCTCCCTGCCCGCC-------CA
droBip1 scf7180000396708:4566127-4566369 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAAAATC-ATCTAT----TTATG--------ACTAC---AA-ATCCC---------------CCCTACC-T-TTTTC-----------------------------------------------------------------GAAGCTGTCGTCCCA------------C-----ATTAACTCTAATT------CTAACCAAAA---AAAAAAAAACAAACTAAC-AA-C-----------------------TACTAA-------------------------CCAA----------AGATCTAGCTCTTTATGGAGGA-----------------------GCAC--------------------------------------------------------------------------------------TACCGATCTATATGT---------------CC------------------ACCTGTCTCTCTGTATCTCCCT-CCTG---------CC
droKik1 scf7180000302255:219123-219376 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TTGATATAT----TTGAA-----------ACTATAAAACCCCTCTCTACAATCCAACCCTTAAC-TT-TTCC-----------------------------------------------------------------AACGCTGTCGTCCCC-----------TCTTAACA------CTAACTGATAA---------TT---TA-----------CTTAC-AA-C-----------------------TACTAA-------------------------TCAA----------AGACT--------------------TTC-AAATAGCTCTGATTAAGTTCAG-ATTGTGTGAGG---------------------------A-------------TT-------------------------------CAAATCTTT--TA---------------GTCCTTCC---TTCAC-TTTCTCTCTCTT----------------------------A
droFic1 scf7180000453580:41030-41301 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TA-AA-CAA----TTATA-----------ACTGTGCAGTCCGTC-CAACGACCAAACCCTTAAC-TTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCC------------TCTAACA------CAAACT---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGC-------------------------CCAA----------AGACC----TCTGCAGGGAAACAAATTTCAAAATGCTCTGAAGAAGTACAG-AACGTACTCGA------------AA-------------A-------------TACAAT--------G-TAACCCA--------AGACGGTCAAT---------------------------------A--TTTCCTTGTCACACTTT-----------------------A
droEle1 scf7180000490967:354206-354477 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TC----GAT----TTATA-----------ACATTGCAGTACGTC-CTACGATCCAACCCTTAACCTTTTTTC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CCAAACA------CTAACT---TA---------TT---GA-----------CTAAC-AAAC-----------------------CAATGT-------------------------CCAC----------AGACC----TCTGCTGGGAAGATAATCCGAAAAAGTTCTAAAGAAGTGCAT-ATTGTACTTATAA-------------------------A-------------TTGAAT--------T-TTTCCAA--------TGCTGGTCTAA----------------------------------T-TTTCCTTGTCACTGTTC-----------------------A
droRho1 scf7180000780217:43939-44208 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TC----AAT----TTATT-----------ACTCTGCAGTCCGTC-CTACGATCCAACCCTTAACCTTTTTCC-----------------------------------------------------------------GAAGCTGTTGTCCCA------------CCAAACA------CTAACT---AA---------TC---AA-----------CTAACTAA-C-----------------------CAATGT-------------------------CCAA----------AGACC----TCTGCACGGGAGAGAATTC-AAATAGCTCTGAAGAAGTACAG-ATTGTACTCAT---------------------------T-------------TTCAAT--------ATTTACCCA--------TGCCGGTCGCT---------------------------------TTATATCCTTGTCACT----------------C---------CC
droBia1 scf7180000299102:44011-44253 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TC----GAT----TTTTA-----------ACACTGCAGTC--------------AACCCCCAAA-CTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAACC---AC---------T----TA-----------CTAAC-AA-C-------------------------------------------------------CAA----------AGACC----TCTGCAGGGAAGATAACTC-CAGTGGCTCTGAAGAAGTACAG-ATTGTACTTGA---------------------------------------------AG--------A-TTACCCA--------AGCCGGTCTC-------------------------------------TTTCCTGGTCACACTC----------CCTC---------CC
droTak1 scf7180000415580:581187-581450 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TT----TAT----TTATA-----------ATTCTGCAGTCCGTC-CTACGATCCAACCCTTAAC-TTTTCCC---------------------------------------------------------------AAAAAGCTGTTGTCCCA------------CTTAACA------CTAACA---AC---------CA---AA-----------CTAAC-AA-C-----------------------AA--------------------------------A----------CGACC----TGTGCAGGGAAGATAATTT-AAATAGCTCTAAA-AAGTACAG-ATTGTACAAAAAA--------AAAGAA-----------A-------------TTAAAT--------A-TTATCCA--------AGCCGGTCACT----------------------------------T-TTTCCTTGTCACA----------------------------
droEug1 scf7180000409557:438809-439071 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TC----GATTTT-ATATA-----------ACTCTGCAGTCCGTC-CTACCAACCAAACCTTAAC-TTTTTCC--------------------------------------------------------------CTCAAAGCTGTCGTCCCA------------CTTAATA------CTTACT---AA---------CA--AAA-----------CTAAC-AA----------------------------TAC-------------------------CCAAAG--------AGAGC----TAAGCAGGGAA---------------------AGATGTACTTTATAGTACACAA--------------------GT---------------------AA----------A-TTACCCAAA------AGCTGGCCTCTCTT---------------------------------CTTCCTTGCCACACTTTATCTCTCT--------------TG
dm3 chr3R:12118507-12118752 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-GTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAAAT---AA---------TG---AA-----------CTAAC-AA-C-----------------------AAATTT-------------------------CCAA----------AGACC----TCTATAGGGAATAAAATTC-AAATTGCTCTGAAGACGTACGA-ATTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTTT---------------------------------GT-TTTCCTAGTCACA----------------------------
droSim2 3r:9132408-9132653 - dsi_14598 TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-TTCTTCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAAAT---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------CGACC----CCTATAGGGAATAAAATTC-CAATTGCTCTGAAGACGTACGA-TTTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTCT---------------------------------AT-TTTCCTAGTCACA----------------------------
droSec2 scaffold_12:2028793-2029038 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTTTTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-TTCTTCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CAAAAT---AA---------TA---AA-----------CTAAC-AA-C-----------------------AAATGT-------------------------CCAA----------CGACC----TCTATAGGGAATAAAATTC-CAATTGCTCTGAAGACGTACGA-TTTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTCT---------------------------------AT-TTTCCTAGTCACA----------------------------
droYak3 3R:14306282-14306543 - TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTATA-----------ACTCTGCAGCCTGTT-CTACGAACCCACTCATAAC-TTTACCC-----------------------------------------------------------------AAAGCCGTCGTCCCA------------C-TAACA------CTAACT---AA---------TG---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------ACTCC----TCTGTAGGGAATAAAATTC-GAATTGCTCTGAGGAGGTACGA-ATTGTAAATGA---------------------------------------------------------TTA-------------------------------------------------------------TCCCTGTCACAACTTATCTCCCC-CCTCTCCGTATCTTT
droEre2 scaffold_4770:11642798-11643047 + TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTATA-----------ACTCTGTAGTTTGTT-CTACGATCCAAACCATAAC-TTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAACG---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------ATTCC----TCTGTAGGGAATAAAAATC-AAATTGCTCTGAAGAC--------------ATGA---------------------------------------------------------TTA-------------------------------------------------------------TCCCTGTCACACTTTATCTCCTTTCCTCCCCGTATC-TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCCGCAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTAAATT--GT-----CT-TTATTATA-----------AC---ACAGAAT----------------ATACAAC-TTTTTCC-----------------------------------------------------------------ATAC------CCCTA------------TAAAACA------CTAACA---GC---------AATAAAAACAA-------CTAAC-AA--------------------------------------------AAAGAAATAGGTCATGAAACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAAAAACAATAATGA-AAATAAAAATAA--------------------------------------ATATAT-----TATTTTT---------------TTCCATGCCCGTTTGT-CGTCCTTTTGACA----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAAAA........................................................................................................................................................27208.3016600166000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------AAAAAAAAAAAAAAAAAA-A------------..............................................................................................................................................................21202.35470000000000000000000047000000000000000000000000000000000000000000
.CCGCAACTACACTTAGAGTATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000001000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................A------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAA..........................................................................................................................................................24201.90380000000000000000000004034000000000000000000000000000000000000000
.CCGCAACTACACTTAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAAAAACAA....................................................................................................................................................3621.002000000000000000000000000000000000000000000000000000000000000200
............................TATAAGCTATTAGGATCACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
................................AGCTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
...............AGAGTATAGGTTTTATAAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................TATAAGCTATTAGGATCACATGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA-A------------AAAA..........................................................................................................................................................22200.95190000000000000000000000000000000000000000000000000000000000000019
......................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA-A------------AAAAA.........................................................................................................................................................24200.85170000000000000000000060110000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA-A------------AAAAAA........................................................................................................................................................23200.75150000000000000000015000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA-A------------AAAA..........................................................................................................................................................19200.75150000000000000000000015000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA-A------------AAAAAAA.......................................................................................................................................................18200.153000000000000000000030000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAA..........................................................................................................................................................26200.153000000000000000000000003000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------..............................................................................................................................................................25200.102101000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------..............................................................................................................................................................26200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TGAAACAAA------------------------------------AAAAAAAAAAA...................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------AAAAAAAAAAAAAAAAAA-...........................................................................................................................................................................21200.051000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAACAAA------------------------------------AAAAAAAAAAAAAAAA..............................................................................................................................................................................23200.051000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA-A------------AAAAAAAC......................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................AACAAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AA............................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GAAACAAA------------------------------------AAAAAAAAAAAAAAAAA.............................................................................................................................................................................25200.051000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------AAAAAAAAAAAAAAAAAA-A------------AAAAAA........................................................................................................................................................28200.051000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA-A------------AAAAAAAC......................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCCACAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTAAAAT--GT-----TT-TTATTATA-TTTATTGAATAC---AC-------A-TAATATGCCAACCTCTAC--TC------------------------------------------------------------------------------CGTCCCG--------------TAAAA------TTGACT---AA---------CA--AAA-----------TAAAC-----------------------------------------------------------C-------------------------ATAAGACAAAAAAAAA-AAATCATTTACAAAACAT-------------------------------------------------------------------------------------------------ATATTT---------------TTCCATGCCCGTTTGT-CGATTTACTGACA----------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................TAAGCTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
.CCACAACTACACTTAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTGT-CGATTTACTGACA----------------------------2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AATCATTTACAAAACAT-------------------------------------------------------------------------------------------------ATATT..........................................................................2211.001100000
droGri2
TCCGCAACTACACTTAGAGTATAGGTTTTATAAGCTATTAGGATCACATGGTATGTTGAAT----T----GAA----TGTTT-----------CTATTAC------------------A-----TA-C-TTTCCCCCTACCC--------------------------------------------------------C--CCA---------CCAATTACCCCTTACTTAAACA------CTAACA---GC---------CA--TAA-----------CTAAC-AATCAAACATAATAAAATTTAAATCAGAAATATGATAATA-TATATATATATATATATATATATATATTTATA------------------------------------------------------------------------------------------------------------TATATATATATTTATATA--TATAT----------ATATTTATATATATATATATATTCCACGCCCGTTT------------GACG----------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................TAAACA------CTAACA---GC---------CA--TAA-----------CTAAC-A......................................................................................................................................................................................................................................................................................................2511.00110
droWil2
TTAT---------------TTCGATTTTTGCACGGCATTCGGAT----------------TT--------------------------------------------------------------------TATACAAAAGCCAAACAAAAC--------------------------------------------------AAA------------------------------G------CCAAC------AACAG----CA--AAAGCAACAAAAATTGAAT-TG-G-----------------------AACTAACCAAA-A-AAAAAAAAAAAAAATACAGAAAGACGGCCAAA-------------------------------------------AATGAAA-GGCGCAAAGCA---------------------------------------------------------GGAGCGA--------AAC-----TACCTCC---------------CT------------CC-CTGCCTGCTCGCATT-----GTGGC-CCTT---------TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................A-A-AAAAAAAAAAAAAATAC.............................................................................................................................................................................................................................................19200.05101000
dp5
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTTAACTA--TT----AAT----TAA-----------A-----------------------TCCAACC------------------------TCAACACCTTAACACCCTAACAAACAAACACGAACCCCACTGAAACCCCGCCCCCAATGCCGTCGTCCTC------------TTTCGTA---------AT------ACTAA----TA--AAACCAACAGCAAATTAAC-AA-T-----------------------TACTAACCCCC-CCCCCCAAAAGAAATCCCTCAAGAAAGAGC------------------------------------CAAGCCAAAGAGGTACAG-ACTGTACGGCTGCACCGAAACGAATATGCCAGATAACACCAAGCACTCTTGCTCTACTACTTATCTCTCCCTCTA--TATAT----------ATATTT----------------------------------ATC----------------------------------TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................CAAGAAAGAGC------------------------------------CAAGCCAAAGAGG.................................................................................................................................................................................2411.0010100000000
...............................AAACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............TTAGAGTATAGGTTTTATAAACTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................GTTTTATAAACTATTAGGATCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTACTACTTATCTCTCCCTCTA--..............................................................................................2611.0010100000000
..CGCAACTACACTTAGAGTATAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTTAACTA--TT----TAT----TAA-----------A-----------------------TCCAACC------------------------TCAACACCTTAACACCCTAACAAGCAAACACAAGCCCCACTGAAACCCCGTCCCAAACGCCGTCGTCCTC------------TTTCGTA---------AT------ACTAA----TA--AAACCAACAGAAAACTAAC-AA-T-----------------------TACTAACCCCC-C-CCCCGAAAGAAATCCCTCAAGAAAGAGC------------------------------------CAAGCCAAAGAGGTACAG-ACTGTACGTCTGCACCGAAACGAATATGCCAGATAACACCAAGCACTCTTGCTCTACTACTTATCTCTCCCTCTA--TATAT----------CTATTT-----------------------------AT-CTATATAACTATA----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................TTTATAAACTATTAGGATCACATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
...................................................................................................................................................................................................GTCCCAAACGCCGTCGTCCT.............................................................................................................................................................................................................................................................................................................................................................................2012.002200000
........................GTTTTATAAACTATTAGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACGTCTGCACCGAAACGAAT..................................................................................................................................................2411.001100000
................................AACTATTAGGATCACATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droAna3
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAAAAA--AA-ATCTCT----TAATGACTTAATGACTACT----AGTCCGAT-ATA---TC----C---CAC-T-TTTCC-----------------------------------------------------------------GAAGCTGTCGTCCTC------------TCTAACT------CGAATT------TTAACCAAAA---AA-----------CTAAC-CA-C-----------------------TACTAA-------------------------CCAG----------AGATC----TCTTCCTGGAAGAGGACC----------------------AATATGGAG--------------------TGCCAGTTTAT---TGGCACTTTT-----------------------GG--------TTCCGATCTAT---------------------------------AT-GTCCTTTGTCTCT--GTATCTCCCTGCCCGCC-------CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TTAGAGTATAGGTTTTATAAACTATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
....................................................................................................................................................................................................................................................................AAA---AA-----------CTAAC-CA-C-----------------------TACTAA-------------------------CCAG----------AG.............................................................................................................................................................................................................................2511.001010000
droBip1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAAAATC-ATCTAT----TTATG--------ACTAC---AA-ATCCC---------------CCCTACC-T-TTTTC-----------------------------------------------------------------GAAGCTGTCGTCCCA------------C-----ATTAACTCTAATT------CTAACCAAAA---AAAAAAAAACAAACTAAC-AA-C-----------------------TACTAA-------------------------CCAA----------AGATCTAGCTCTTTATGGAGGA-----------------------GCAC--------------------------------------------------------------------------------------TACCGATCTATATGT---------------CC------------------ACCTGTCTCTCTGTATCTCCCT-CCTG---------CCSizeHit CountTotal NormTotal
No Reads
droKik1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TTGATATAT----TTGAA-----------ACTATAAAACCCCTCTCTACAATCCAACCCTTAAC-TT-TTCC-----------------------------------------------------------------AACGCTGTCGTCCCC-----------TCTTAACA------CTAACTGATAA---------TT---TA-----------CTTAC-AA-C-----------------------TACTAA-------------------------TCAA----------AGACT--------------------TTC-AAATAGCTCTGATTAAGTTCAG-ATTGTGTGAGG---------------------------A-------------TT-------------------------------CAAATCTTT--TA---------------GTCCTTCC---TTCAC-TTTCTCTCTCTT----------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TA-AA-CAA----TTATA-----------ACTGTGCAGTCCGTC-CAACGACCAAACCCTTAAC-TTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCC------------TCTAACA------CAAACT---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGC-------------------------CCAA----------AGACC----TCTGCAGGGAAACAAATTTCAAAATGCTCTGAAGAAGTACAG-AACGTACTCGA------------AA-------------A-------------TACAAT--------G-TAACCCA--------AGACGGTCAAT---------------------------------A--TTTCCTTGTCACACTTT-----------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TC----GAT----TTATA-----------ACATTGCAGTACGTC-CTACGATCCAACCCTTAACCTTTTTTC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CCAAACA------CTAACT---TA---------TT---GA-----------CTAAC-AAAC-----------------------CAATGT-------------------------CCAC----------AGACC----TCTGCTGGGAAGATAATCCGAAAAAGTTCTAAAGAAGTGCAT-ATTGTACTTATAA-------------------------A-------------TTGAAT--------T-TTTCCAA--------TGCTGGTCTAA----------------------------------T-TTTCCTTGTCACTGTTC-----------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TC----AAT----TTATT-----------ACTCTGCAGTCCGTC-CTACGATCCAACCCTTAACCTTTTTCC-----------------------------------------------------------------GAAGCTGTTGTCCCA------------CCAAACA------CTAACT---AA---------TC---AA-----------CTAACTAA-C-----------------------CAATGT-------------------------CCAA----------AGACC----TCTGCACGGGAGAGAATTC-AAATAGCTCTGAAGAAGTACAG-ATTGTACTCAT---------------------------T-------------TTCAAT--------ATTTACCCA--------TGCCGGTCGCT---------------------------------TTATATCCTTGTCACT----------------C---------CCSizeHit CountTotal NormTotal
No Reads
droBia1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TC----GAT----TTTTA-----------ACACTGCAGTC--------------AACCCCCAAA-CTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAACC---AC---------T----TA-----------CTAAC-AA-C-------------------------------------------------------CAA----------AGACC----TCTGCAGGGAAGATAACTC-CAGTGGCTCTGAAGAAGTACAG-ATTGTACTTGA---------------------------------------------AG--------A-TTACCCA--------AGCCGGTCTC-------------------------------------TTTCCTGGTCACACTC----------CCTC---------CCSizeHit CountTotal NormTotal
No Reads
droTak1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACTA--TT----TAT----TTATA-----------ATTCTGCAGTCCGTC-CTACGATCCAACCCTTAAC-TTTTCCC---------------------------------------------------------------AAAAAGCTGTTGTCCCA------------CTTAACA------CTAACA---AC---------CA---AA-----------CTAAC-AA-C-----------------------AA--------------------------------A----------CGACC----TGTGCAGGGAAGATAATTT-AAATAGCTCTAAA-AAGTACAG-ATTGTACAAAAAA--------AAAGAA-----------A-------------TTAAAT--------A-TTATCCA--------AGCCGGTCACT----------------------------------T-TTTCCTTGTCACA----------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAAACAA--TC----GATTTT-ATATA-----------ACTCTGCAGTCCGTC-CTACCAACCAAACCTTAAC-TTTTTCC--------------------------------------------------------------CTCAAAGCTGTCGTCCCA------------CTTAATA------CTTACT---AA---------CA--AAA-----------CTAAC-AA----------------------------TAC-------------------------CCAAAG--------AGAGC----TAAGCAGGGAA---------------------AGATGTACTTTATAGTACACAA--------------------GT---------------------AA----------A-TTACCCAAA------AGCTGGCCTCTCTT---------------------------------CTTCCTTGCCACACTTTATCTCTCT--------------TGSizeHit CountTotal NormTotal
No Reads
dm3
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-GTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAAAT---AA---------TG---AA-----------CTAAC-AA-C-----------------------AAATTT-------------------------CCAA----------AGACC----TCTATAGGGAATAAAATTC-AAATTGCTCTGAAGACGTACGA-ATTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTTT---------------------------------GT-TTTCCTAGTCACA----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................AACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000000001000000100000000000000000000000000000000000000
...............AGAGTATAGGTTTTATAAACTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TACACTTAGAGTATAGGTTTTATAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAAACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000
.CCGCAACTACACTTAGAGTATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................TTTTATAAACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TACGATCCA-----TAAC-GTTTCCC-----------------------------------------------------------------AAAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATAGGGAATAAAATTC-AAATTGCTCTGA......................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA---------------------------------------------------------TTATCGA--------AGCCGGT.................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................AAC-GTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------C...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................GTATGTAATCTA--TC----GCT----T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGCAACTACACTTAGAGTATAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.CCGCAACTACACTTAGAGTATAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TATAAACTATTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..CGCAACTACACTTAGAGTATAGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAAACTATTAGGATCACATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AAC-GTTTCCC-----------------------------------------------------------------AAAGCTGTCGT................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAATTGCTCTGAAGACGTACG.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............TTAGAGTATAGGTTTTATAAACTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCCGCAACTACACTTAGAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAAGCTGTCGTCCCA------------CTTAACA------CTAA...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCAACTACACTTAGAGTATAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GACC----TCTATAGGGAATAAAAT.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTAGAGTATAGGTTTTATAAACTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................GTATAGGTTTTATAAACTATTAGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.CCGCAACTACACTTAGAGTATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACTTAGAGTATAGGTTTTATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCTATAGGGAATAAAATTC-AAATTGC...........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............TAGAGTATAGGTTTTATAAACTATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..CGCAACTACACTTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCCGCAACTACACTTAGAGTATAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AACTATTAGGATCACATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-TTCTTCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAAAT---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------CGACC----CCTATAGGGAATAAAATTC-CAATTGCTCTGAAGACGTACGA-TTTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTCT---------------------------------AT-TTTCCTAGTCACA----------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................AAATTC-CAATTGCTCTGAAGACGTA...............................................................................................................................................................................2512.00201100000000000000
....................................ATTAGGATCACATGGTATGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTC-CAATTGCTCTGAAGACGTACG.............................................................................................................................................................................2411.00100100000000000000
...................................................................................................................................CTTCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTT.............................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AATAAAATTC-CAATTGCTCTGAAGAC..................................................................................................................................................................................2611.00100100000000000000
..................................CTATTAGGATCACATGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTCTGAAGACGTACGA-TTTGTAC....................................................................................................................................................................2811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTCT---------------------------------............................................2411.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTCTCT---------------------------------AT-TTTCCTAG.................................2011.00110000000000000000
droSec2
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTTTTAGGATCACATGGTATGTAATCTA--TC----GCT----TTACA-----------ACTC----GTCTGTT-CTACGATCCA-----TAAC-TTCTTCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CAAAAT---AA---------TA---AA-----------CTAAC-AA-C-----------------------AAATGT-------------------------CCAA----------CGACC----TCTATAGGGAATAAAATTC-CAATTGCTCTGAAGACGTACGA-TTTGTACATGA---------------------------------------------------------TTATCGA--------AGCCGGTCTCT---------------------------------AT-TTTCCTAGTCACA----------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................T-------------------------CCAA----------CGACC----TCTATAGGGA............................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTCTGAAGACGTACGA-TTTGTAC....................................................................................................................................................................2711.0010100
.CCGCAACTACACTTAGAGTATAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..........................TTTATAAACTTTTAGGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................................AAATGT-------------------------CCAA----------CGACC----TCTATAGGGA............................................................................................................................................................................................................2511.0010010
..........................................ATCACATGGTATGTAATCTA--TC----GCT----T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
................................AACTTTTAGGATCACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.................................ACTTTTAGGATCACATGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTATA-----------ACTCTGCAGCCTGTT-CTACGAACCCACTCATAAC-TTTACCC-----------------------------------------------------------------AAAGCCGTCGTCCCA------------C-TAACA------CTAACT---AA---------TG---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------ACTCC----TCTGTAGGGAATAAAATTC-GAATTGCTCTGAGGAGGTACGA-ATTGTAAATGA---------------------------------------------------------TTA-------------------------------------------------------------TCCCTGTCACAACTTATCTCCCC-CCTCTCCGTATCTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.CCGCAACTACACTTAGAGTATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300000030000
................................................................................................................................................................................................................................................................................................................................................................................................C-GAATTGCTCTGAGGAGGTACGA-ATTGT......................................................................................................................................................................2811.00100000010000
............CTTAGAGTATAGGTTTTATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............AGAGTATAGGTTTTATAAACTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAAATTC-GAATTGCTCTGAGGAGGT................................................................................................................................................................................2511.00100000010000
.CCGCAACTACACTTAGAGTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
TCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCACATGGTATGTAATCTA--TC----GCT----TTATA-----------ACTCTGTAGTTTGTT-CTACGATCCAAACCATAAC-TTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CTTAACA------CTAACG---AA---------TA---AA-----------CTAAC-AA-C-----------------------CAATGT-------------------------CCAA----------ATTCC----TCTGTAGGGAATAAAAATC-AAATTGCTCTGAAGAC--------------ATGA---------------------------------------------------------TTA-------------------------------------------------------------TCCCTGTCACACTTTATCTCCTTTCCTCCCCGTATC-TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................AAACTATTAGGATCACATGGTATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.CCGCAACTACACTTAGAGTATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.................................................................................................................................TTTTCCC-----------------------------------------------------------------AAAGCTGTCGTCCCA------------CT..............................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.............................ATAAACTATTAGGATCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................GT-------------------------CCAA----------ATTCC----TCTGTAGGG.............................................................................................................................................................................................................2011.0010100000
..............TAGAGTATAGGTTTTATAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/16/2015 at 08:48 PM