ID:

dvi_15158

 Coordinate:

scaffold_13047:1686566-1686716 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.3 -19.3 -19.3 -19.1

Flybase annnotation

exon [dvir_GLEANR_9049:5]; CDS [Dvir\GJ23717-cds]; intron [Dvir\GJ23717-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTATATAAACTTTAGAACATTAAGCTTATCGCAAACGATTTTTTACAGTGACAAAATGTGTGTGAAGCTGTGTGTATGGGTGTATGTGTGTAAGTACAAGTGTGTGTGCGATTGTCATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATTTTAAAATAAGCCCGCGCTGAAATGTTTGGAATTGTTCAC
*************************************************************************************........((......................((.((((.(((.(((((((..(((.......(((((......)))))......))))))))))..)))..))))))....))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 M047
female body
 SRR060656
9x160_ovaries_total
 SRR060670
9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060688
160_ovaries_total
 SRR1106724
embryo_12-14h
 SRR1106730
embryo_16-30h
 V047
embryo
 SRR060683
160_testes_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060659
Argentina_testes_total
.....................................................................................GCAAACGATTTTTTACAGTGA................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTGGCAAAAGCTCAAGTAAG.................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TACAGTGACAAAATGTGTGTG.................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GTGTGTGAAGCTGTGTGTATG...................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GAAATGTTTGGAGTTGTTCAC 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGCGATTGTCATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGC.............................................. 44 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CTCAAAGCGCATCGCGCTAAAG......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAAAATGTGTGTGAAGCTGTG............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGAAGCTGTGTGTATGGGTGT................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGAGCCATAATTTTAAAATAA.............................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTTGCTACCGAAACACTCAAAGCGCA.................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTAAGTACAAGTGTGTGTGC....................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTGTGTGTATGGGTGTATGTG............................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AGCACTCAAGGCGCATCGCGC.............................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGAAGCTGTGTGTATGGGTG.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGAAATGTTTGGAATTGTTC.. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGTGAGGCTGTGTGTATGGGT................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTTACAGTTAAAAAATGTGT....................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CAGCTATCGCTACCGAGACAC.............................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTAAGTACAAGTGTGTGTGCGAT.................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TAAAGGTACATTATATAAACT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGTGAAGCTGTGTGTATGGGT................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TGTGTGAAGCTGTGTGTATGG..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGAAGCTGTGTGTATGGGTGT................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TACCGAGACACTCAAGGCGCG.................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGACAAAATGTGTGTGAAGCT............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAATGTGTGTGAAGCTGTGTG.......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAGCTGTGTGTATGGGTGTAT............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AAACTTTAGAACATTAAGCTTATCGC.................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGTAAGTACAAGTGTGTGTGC....................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAG......................................................................................................................................................................................................... 42 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGTGTGTGAAGCTGTGTTTTT....................................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AGCGCTCAAAGCGCATCGCG............................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTGTGTATGGGTGTATGT............................................................................................................. 18 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGCAAGTGTGTGTGCGATTGT................................................................................. 21 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGTGTATGTGTGTGGGTACAA................................................................................................. 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTGTGTATGGGTGTATGTG............................................................................................................ 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTGAGTGGCAAAGGCGCAAGT....................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................CACTCAAAGATGATCGCGC.............................................................................................................................................................................................................. 19 3 18 0.17 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0
....................................................................................................CACTGACAAAATGTGTGAAAAG................................................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................AAGCTTATCGCCATCGAT............................................................................................................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................AGTGTGTCTGCGAGTGTCA............................................................................... 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................CTCGCCGAAACGTTTGGAA........ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCTCTAACGTCGATAACGATGGCTTTGTGAGTTTCGCGTAGCGCGATTTCCATGTAATATATTTGAAATCTTGTAATTCGAATAGCGTTTGCTAAAAAATGTCACTGTTTTACACACACTTCGACACACATACCCACATACACACATTCATGTTCACACACACGCTAACAGTACGGACACACCGTTTTCGAGTTCATTCAACTCGGTATTAAAATTTTATTCGGGCGCGACTTTACAAACCTTAACAAGTG
****************************************************........((......................((.((((.(((.(((((((..(((.......(((((......)))))......))))))))))..)))..))))))....))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 V053
head
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 V116
male body		 M027
male body		 GSM1528803
follicle cells		 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
....................GGCTTTGTGAGTTTCGCGTA................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TTACACACACTTCGACACACA......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGTTCATTCGACTCGGTATTAAGGTT................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTAATTCGAATAGCGTTT................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......ACGTCGATAACGATGGCTT.................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGTTCATTCAACTCGGTATTA........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TACGGACACACCGTTTTCGAGTTCAT...................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGGCGCGACTTTACAAACCTT........ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................TTACACACACTTCGGCACACA......................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................TACCCACATACACACATTAAT.................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTCGGTATTAAAATTTTATT.............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................GTCACTGTTTTACACACACTT.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........GTCGATAACGATGGCTTTGTGAG............................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCACATACCCTCAGTCATG................................................................................................... 19 3 5 0.80 4 0 0 0 0 0 0 0 0 0 4 0 0 0
..........................................................................................................................GACACACGTACCCACATACAC............................................................................................................ 21 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................TGGCTTTGTGCGTTCCGC...................................................................................................................................................................................................................... 18 2 10 0.20 2 0 0 0 0 0 0 0 0 0 0 2 0 0
...................TGGCTTTGTGGGTTCCGC...................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................TGGCATTGTGAGTTCCGC...................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................TTGGCTTTGTGAGTTCCGC...................................................................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................AAAATGTAGCTGTTTTAC.......................................................................................................................................... 18 2 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 1
..................ATGGCATTGTGCGTTCCGC...................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................CACAGATTCATGTGAACAC............................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:1686516-1686766 + dvi_15158 AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAA---AC-TTTAGAACATTAAGC-------------TTATCGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGAC---AAAAT--------------------GTGTGTGAAGCTGTGTGTATGG----GTGTAT----------------------GTGTGTAAGTACAAGTGTGT----------GTGCGA----------------TTGTCATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATT-TTA--AAATAAGCCCG---------------CGCTGA----AATGT-------------------------------------------------TT-------------------------G----GAATTG-------------------------------------TTCAC----
droMoj3 scaffold_6540:5704366-5704637 + AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATTT----------AGAATA-------------TTAAGAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAG---AACACATGTATGAGTGAGTGTGA----------------------GTGTGTGTGCTTGTGTGTGAGTATGCGTGCGCGAGTGTGTAAGTACAAATG-------ATATATTTGAAT----------------TTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTTGAGCC-----------------------------------------------------ATA---------------TT--TTGAA----TGAAACCAGAGATGAAAA---------------------------GTATGGAATTA-------------------------------------TTCAT----
droGri2 scaffold_15074:6076311-6076585 - AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGC-------------TTATCGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGAT---ACAAT--------------TTTAGTG------------------TGT----GTCCAT----------------------TTCTGTAAGTACAAATATGCCTGGCTCTGTTTGTTTTTTTTTTGTTTTGCCACT-CAATGCTTGTGTGGCAAATGCCCAAGTAAGTTGGGCGAAACGT-AC-------AAAAA--CACAAGAA-AAAAGGCGCTGA----AATCGTATGGA-----------------------------------------------------------------------------ATTG-------------------------------------TCAAC----
droWil2 scf2_1100000004943:3274783-3275001 + AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGT-------------ATA-----A-AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGAT---TGTAA----------------------------------------GTGTGTGTTTGT----------------------GAGTGTAAGTAGTT---------------------------------------------------------------------------------------AGAACTTAAGATGA---------------CTTGGA----C---TTGTGGAC------------------------------------------------------------------------------------------------------------------------------
dp5 2:22534686-22534918 + AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACAC----------TTAAGAAACATCTCTTCCTTCCCCCG-AAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAACTCGC--------------------G------------------TGTGTTT-TGTTG----------------------GTGTGTAAGTAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-GAA----GATCTCTC---------------CA--TCGAA----CGATCCTTGCTTGGAAGA---------------------------G----AAC-TC---------------TCCCCCTCGATCTCTTCCTCTCTCTTC----
droPer2 scaffold_3:5313576-5313808 + AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACAC----------TTAAGAAACATCTCTTCCTTCCCCCG-AAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAACTCGC--------------------G------------------TGTGTTT-TGTTG----------------------GTGTGTAAGTAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-GAA----GATCTCTC---------------CA--TCGAA----CGATCCTTGCTTGGAAGA---------------------------G----AAC-TC---------------TCCCCCTCACTCTCTTCCTCTCTCTTC----
droAna3 scaffold_13340:15436293-15436499 - AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACAC----------TTAAGT-------------TTACCCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAA---CTCGC--------------------G------------------TGT----GTGTGT----------------------TTGTGTAAGTAAT-ATA------------------------------------------------------------------------------CATAATAGAACGTAAGATGT---------------CGCGGA----TT----G---CCTTTC-----GCTTTC--TTG----AGATCCTGGCTGGAATGGCC---------------------------------CTG-------------------------------------GCTAC----
droBip1 scf7180000396708:4595380-4595571 + AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAATC----------TTAAGT-------------TTATCCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGAT---ATCGC--------------------G------------------TGT----GTGTGT----------------------TTGTGTAAGTAA---------------------------------------------------------------------------------------ATAGAACGTAAGAA-------------------------------------------------------------------CCAAGCTGGAATGGTCCTGGCTCCGTTAGGTCGGGCAATGAG----ATCGCA----------------------------------------------
droKik1 scf7180000302255:259737-259926 + AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACAC----------TTAAGT-------------TCACCCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC----------------------------------------GTGTTTATGTGA----------------------GTGTGTAAGTAGTT--------------------------------------------------------------------------------------------------------------------------------TATCTAGAAATATA-----GCCAT----------TGATCCAAGATTGGATGACCCAGAA-------------A------------AAATG-------------------------------------AATAC----
droFic1 scf7180000453580:5875-6081 - AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------CTAAGT-------------TCACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTTAT-----------------------------------------------------------------------------------ATAGATCGTAAGATGG---------------CGCGGA----TAAATCGCGGACTATT-----GGTATC---------CGATCCAAGCTTGGATGACC-------------------------G----GATCTTTCGG------------------------------------------
droEle1 scf7180000490967:318390-318605 - AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACAC----------TTAAGT-------------TCACCCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC--------------------G------------------TGT----GTGTGT----------------------GTGTGTAAGTAGTTATA------------------------------------------------------------------------------C---ATAGATCGTAAGATGG---------------CGCGGA----TATATCGCGGACTCTAGCACAGCTAAC---------CGATCTTAGCTTTGATGACC-------------------------G----GATGTTTCG-------------------------------------GC----
droRho1 scf7180000780217:6862-7074 - AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACAT----------TTAAGT-------------TTACCCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTT---CGCGT----------------------------------------GT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGAACGTAAGATGG---------------CGCGGA----TATATCGCGGACTCTC-----GCTATC---------CGATCCTAGCTTTGATGACC-------------------------G----GATGTTTCGGCCAA-----------------------------GCGAT----
droBia1 scf7180000299102:8787-9008 - AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------TTAAGT-------------TTACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC----------------------------------------GT----GTGTGT----------------------GTGTGTAAGTAGTTATA-------G----------------------------------------------------------------------CAT-ATAGATCGTAAGAAGG---------------CGCGGATACGTATGTCGCGGACTA----------------------------AGGCTGGGATGACC-------------------------C----GACGTTTCGGCCAAGCGATTG----------------------CATCCGAGT
droTak1 scf7180000415409:717321-717525 - AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAT----------TTAAGT-------------TTACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGAT---CGCGC--------------TC----G------------------CGT----GTGTGT----------------------GTGTGTAAGTAGTTAT-----------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGCTACATATATCG---ATCTTT-----GCTATC---------CGATCTTTGCTTGGATTACC-------------------------G----GAC-------------------------------------------------
droEug1 scf7180000409557:474784-474992 + AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACAC----------TTAAGT-------------TCATCCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCT---CGCGC--------------GTGAG--------------------TGT----ATGTGT----------------------GTGTGTAAGTAGTTATA------------------------------------------------------------------------------C---ATATATAATAAGACAG---------------CGCGGA----TATATCGCGGACTATC-----GCTATC---------CAATCTAAGCGTGGATGACC-------------------------G----GACGT-----------------------------------------------
dm3 chr3R:7777498-7777689 + AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCT---CGCGC--------------------T------------------CGT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------
droSim2 3r:13327540-13327729 - AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------
droSec2 scaffold_0:14191942-14192131 - AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAA------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------
droYak3 3R:16641792-16642020 - AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------CTAAGT-------------TTATCCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGAT---CGCGT--------------------G------------------TGT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTATT-----GCCATT-CGAAGATTCAATCGTAGCTTGGATGACC-------------------------G----GATGTTTCG-------------------------------------GC----
droEre2 scaffold_4770:13842510-13842723 - AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACAC----------TTAAGT-------------TTATCCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGAC---CGCGT----------------------------------------------GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAAACGG---------------TGCGGA----TTTATCGCGGACTATT-----GCTATT---------CGATCGTAGCTTGGATGACC-------------------------G----GATGTTTCGGCCAAGCG--------------------------AGTGC----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAA---AC-TTTAGAACATTAAGC-------------TTATCGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGAC---AAAAT--------------------GTGTGTGAAGCTGTGTGTATGG----GTGTAT----------------------GTGTGTAAGTACAAGTGTGT----------GTGCGA----------------TTGTCATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATT-TTA--AAATAAGCCCG---------------CGCTGA----AATGT-------------------------------------------------TT-------------------------G----GAATTG-------------------------------------TTCAC----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................GC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGA.........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGTGGCAAAAGCTCAAGTAAG.................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................TACAGTGAC---AAAAT--------------------GTGTGTG.....................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GTGTGTGAAGCTGTGTGTATG.......................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................TGCGA----------------TTGTCATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGC...........................................................................................................................................................................................4411.001000000000000000000000000000000000000000000000000000000000010000
............................CTCAAAGCGCATCGCGCTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................C---AAAAT--------------------GTGTGTGAAGCTGTG.............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................GTGAAGCTGTGTGTATGG----GTGT..............................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TGAGCCATAATT-TTA--AAATAA........................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GTAAGTACAAGTGTGT----------GTGC....................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................CTGTGTGTATGG----GTGTAT----------------------GTG...................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GTGAAGCTGTGTGTATGG----GTG...............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTGA----AATGT-------------------------------------------------TT-------------------------G----GAATTG-------------------------------------TTC......2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................GTAAGTACAAGTGTGT----------GTGCGA----------------T.................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.............................................TAAAGGTACATTAT--ATAA---AC-T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................TGTGAAGCTGTGTGTATGG----GT................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................TGTGTGAAGCTGTGTGTATGG----..................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................TGAAGCTGTGTGTATGG----GTGT..............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................TGAC---AAAAT--------------------GTGTGTGAAGCT................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................AAAT--------------------GTGTGTGAAGCTGTGTG...........................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................AAGCTGTGTGTATGG----GTGTAT----------------------......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................AA---AC-TTTAGAACATTAAGC-------------TTATCGC-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TGTAAGTACAAGTGTGT----------GTGC....................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
........CAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................4211.001000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................GTGTGTATGG----GTGTAT----------------------GT....................................................................................................................................................................................................................................................................................1840.251000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................TGTGTGTATGG----GTGTAT----------------------GTG...................................................................................................................................................................................................................................................................................2040.251000000000000000000000001000000000000000000000000000000000000000
droMoj3
AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATTT----------AGAATA-------------TTAAGAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAG---AACACATGTATGAGTGAGTGTGA----------------------GTGTGTGTGCTTGTGTGTGAGTATGCGTGCGCGAGTGTGTAAGTACAAATG-------ATATATTTGAAT----------------TTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTTGAGCC-----------------------------------------------------ATA---------------TT--TTGAA----TGAAACCAGAGATGAAAA---------------------------GTATGGAATTA-------------------------------------TTCAT----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................CTGAAACACTCAAAGCGCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................................................................GAGTGTGA----------------------GTGTGTGTGCTT............................................................................................................................................................................................................................................................................................................2020.501100000
droGri2
AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGC-------------TTATCGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGAT---ACAAT--------------TTTAGTG------------------TGT----GTCCAT----------------------TTCTGTAAGTACAAATATGCCTGGCTCTGTTTGTTTTTTTTTTGTTTTGCCACT-CAATGCTTGTGTGGCAAATGCCCAAGTAAGTTGGGCGAAACGT-AC-------AAAAA--CACAAGAA-AAAAGGCGCTGA----AATCGTATGGA-----------------------------------------------------------------------------ATTG-------------------------------------TCAAC----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGT-------------ATA-----A-AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGAT---TGTAA----------------------------------------GTGTGTGTTTGT----------------------GAGTGTAAGTAGTT---------------------------------------------------------------------------------------AGAACTTAAGATGA---------------CTTGGA----C---TTGTGGAC------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................ATA-----A-AAACAATCCTTTCTCTATCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
......................................................................................................................TTTCTCTATCCGATCACCCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................GTGTGTGTTTGT----------------------GAGTGTAAGT............................................................................................................................................................................................................................................................................2211.00101000
................................................................................................................................................................................................GTAA----------------------------------------GTGTGTGTTTGT----------------------GAGTGTAAGTA...........................................................................................................................................................................................................................................................................2711.00100100
....................................................................................................................................................................................................................................................................................................................................................................................GAACTTAAGATGA---------------CTTGGA----C---......................................................................................................................................2011.00110000
...........................................................................................................................................................................GTTTATTTTACAGCGAT---TGTAA----------------------------------------GTGT....................................................................................................................................................................................................................................................................................................................2611.00100010
.............ATTGCAAGTGAAACAATGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................A----------------------------------------GTGTGTGTTTGT----------------------GAGTG.................................................................................................................................................................................................................................................................................1880.13101000
dp5
AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACAC----------TTAAGAAACATCTCTTCCTTCCCCCG-AAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAACTCGC--------------------G------------------TGTGTTT-TGTTG----------------------GTGTGTAAGTAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-GAA----GATCTCTC---------------CA--TCGAA----CGATCCTTGCTTGGAAGA---------------------------G----AAC-TC---------------TCCCCCTCGATCTCTTCCTCTCTCTTC----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................TAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-GA...............................................................................................................................................2312.0020000000020
...................................................................................................................................................................................................................................................................................................................................................................................................................GAA----GATCTCTC---------------CA--TCGAA----CGA...................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................TGTAAGTAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-G................................................................................................................................................2811.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................GA---------------CG-GAA----GATCTCTC---------------CA--TCGAA----CGAT..................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTGCTTGGAAGA---------------------------G----....................................................1811.0010100000000
.............................................................................................................................................................................................AACTCGC--------------------G------------------TGTGTTT-TGTTG----------------------G.....................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACAC----------TTAAGAAACATCTCTTCCTTCCCCCG-AAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAACTCGC--------------------G------------------TGTGTTT-TGTTG----------------------GTGTGTAAGTAGCT---------------------------------------------------------------------------------------AGAACATAAGATGA---------------CG-GAA----GATCTCTC---------------CA--TCGAA----CGATCCTTGCTTGGAAGA---------------------------G----AAC-TC---------------TCCCCCTCACTCTCTTCCTCTCTCTTC----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACAC----------TTAAGT-------------TTACCCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAA---CTCGC--------------------G------------------TGT----GTGTGT----------------------TTGTGTAAGTAAT-ATA------------------------------------------------------------------------------CATAATAGAACGTAAGATGT---------------CGCGGA----TT----G---CCTTTC-----GCTTTC--TTG----AGATCCTGGCTGGAATGGCC---------------------------------CTG-------------------------------------GCTAC----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....TAGCTGCCATTGCTGGCGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C--TTG----AGATCCTGGCTGGAATGGC...................................................................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................AAGATGT---------------CGCGGA----TT----G---CCTTT...........................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................AATAGAACGTAAGATGT---------------CGC.................................................................................................................................................2011.001000010
droBip1
AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAATC----------TTAAGT-------------TTATCCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGAT---ATCGC--------------------G------------------TGT----GTGTGT----------------------TTGTGTAAGTAA---------------------------------------------------------------------------------------ATAGAACGTAAGAA-------------------------------------------------------------------CCAAGCTGGAATGGTCCTGGCTCCGTTAGGTCGGGCAATGAG----ATCGCA----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACAC----------TTAAGT-------------TCACCCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC----------------------------------------GTGTTTATGTGA----------------------GTGTGTAAGTAGTT--------------------------------------------------------------------------------------------------------------------------------TATCTAGAAATATA-----GCCAT----------TGATCCAAGATTGGATGACCCAGAA-------------A------------AAATG-------------------------------------AATAC----SizeHit CountTotal NormTotal
No Reads
droFic1
AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------CTAAGT-------------TCACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTTAT-----------------------------------------------------------------------------------ATAGATCGTAAGATGG---------------CGCGGA----TAAATCGCGGACTATT-----GGTATC---------CGATCCAAGCTTGGATGACC-------------------------G----GATCTTTCGG------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACAC----------TTAAGT-------------TCACCCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC--------------------G------------------TGT----GTGTGT----------------------GTGTGTAAGTAGTTATA------------------------------------------------------------------------------C---ATAGATCGTAAGATGG---------------CGCGGA----TATATCGCGGACTCTAGCACAGCTAAC---------CGATCTTAGCTTTGATGACC-------------------------G----GATGTTTCG-------------------------------------GC----SizeHit CountTotal NormTotal
No Reads
droRho1
AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACAT----------TTAAGT-------------TTACCCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTT---CGCGT----------------------------------------GT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGAACGTAAGATGG---------------CGCGGA----TATATCGCGGACTCTC-----GCTATC---------CGATCCTAGCTTTGATGACC-------------------------G----GATGTTTCGGCCAA-----------------------------GCGAT----SizeHit CountTotal NormTotal
No Reads
droBia1
AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------TTAAGT-------------TTACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCT---CGCGC----------------------------------------GT----GTGTGT----------------------GTGTGTAAGTAGTTATA-------G----------------------------------------------------------------------CAT-ATAGATCGTAAGAAGG---------------CGCGGATACGTATGTCGCGGACTA----------------------------AGGCTGGGATGACC-------------------------C----GACGTTTCGGCCAAGCGATTG----------------------CATCCGAGTSizeHit CountTotal NormTotal
No Reads
droTak1
AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAT----------TTAAGT-------------TTACCCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGAT---CGCGC--------------TC----G------------------CGT----GTGTGT----------------------GTGTGTAAGTAGTTAT-----------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGCTACATATATCG---ATCTTT-----GCTATC---------CGATCTTTGCTTGGATTACC-------------------------G----GAC-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACAC----------TTAAGT-------------TCATCCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCT---CGCGC--------------GTGAG--------------------TGT----ATGTGT----------------------GTGTGTAAGTAGTTATA------------------------------------------------------------------------------C---ATATATAATAAGACAG---------------CGCGGA----TATATCGCGGACTATC-----GCTATC---------CAATCTAAGCGTGGATGACC-------------------------G----GACGT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCT---CGCGC--------------------T------------------CGT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......TGCAGCCATTGCAGGCGAGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GA----TATATCGCGGAT------------------------CGATTGT...............................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................T----GTGTGT----------------------GTGTGTAAGTAG..........................................................................................................................................................................................................................................................................1942.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000001000000115000000000000000000000000000000000
.....TTGCAGCCATTGCAGGCGAGACTCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATAGATCGTAAGACGG---------------CGCGGA----T.........................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................................................................................................................................................................GTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGA......................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................CTTCCAGCGCT---CGCGC--------------------T------------------CGT----GTGTGT----------------------......................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTGCAGGCGAGACTCTAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGG...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTGGATGACC-------------------------G----G...................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATG................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................CTAAAAGCACACCGTGCGAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTGCAGGCGAGACTCTAAAAGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................C--------------------T------------------CGT----GTGTGT----------------------GTGTGTAAGT............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCCAGCGCT---CGCGC--------------------T------------------CGT----GTGTGT----------------------G.....................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................CGAGACTCTAAAAGCACACCGTGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TAAGACGG---------------CGCGGA----TATATCG...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGA----TATATCGCGGAT------------------------CGATTGTA..............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................AAAGCACACCGTGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAAAAGCACACCGTGCGAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CG..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTTCCAGCGCT---CGCGC--------------------T------------------CGT----GTGT..............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTGCAGCCATTGCAGGCGAGACTCTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGAGACTCTAAAAGCACACCGTGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAT------------------------CGATTGTAGCTTGG........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGATTGCAGCCATTGCAGGCGAGACTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTCTAAAAGCACACCGTGCGAAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAGCACACCGTGCGAAAGGTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGCACACCGTGCGAAAGGTACATTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----GA..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....TTGCAGCCATTGCAGGCGAGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTCCAGCGCT---CGCGC--------------------T------------------CGT----GTG...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTAAAAGCACACCGTGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAAAGCACACCGTGCGAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAGCACACCGTGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTGCAGGCGAGACTCTAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.GAGATTGCAGCCATTGCAGGCGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAAAAGCACACCGTGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CATTGCAGGCGAGACTCTAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................T----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................ACCGAT-----------------------------------------------------------TTCTTCCAGCGC.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------CGATTGTAGCTTGGATGACC-------------------------G----GA..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATCCC-A-AACCGAT-----------------------------------------------------------TTCTTCC..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CGCGC--------------------T------------------CGT----GTGTGT----------------------GTGTG.................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................C--------------------T------------------CGT----GTGTGT----------------------GTGTGTAAGTG...........................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................T----GTGTGT----------------------GTGTGTAAGTAGA.........................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TGT----------------------GTGTGTAAGTAGTA-------------------------------------------------------------------------------------T..................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------------------CGATTGTAGCTTGGATGACC-------------------------G----....................................................2411.00101000000000000000
..............TTGCAGGCGAGACTCTAAAAGCACACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAT------------------------CGATTGTAGCTTGGAT......................................................................................2111.00101000000000000000
.................................................................................................................................................................................................CGC----------------------------------------GC----GTGTGT----------------------GTGTGTA...............................................................................................................................................................................................................................................................................1870.14100000000001000000
droSec2
AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATAC----------TTAAGT-------------TTATCCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGT---CGCGC----------------------------------------GC----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGACGG---------------CGCGGA----TATATCGCGGAA------------------------CGATTGTAGCTTGGATGACC-------------------------G----GATGTT----------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACAC----------CTAAGT-------------TTATCCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGAT---CGCGT--------------------G------------------TGT----GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTATT-----GCCATT-CGAAGATTCAATCGTAGCTTGGATGACC-------------------------G----GATGTTTCG-------------------------------------GC----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATTCAATCGTAGCTTGGAC......................................................................................2311.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGTAAGATCGTAAGGCGCGG...............................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGCGCGGA----TATATCGCGGA...............................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................GTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAGAT--...................................................................................................................................................................2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGCGGA----TATATCGCGGA...............................................................................................................................2311.00100000100000
.................................................................................................................................................................................CTTCCAGCGAT---CGCGT--------------------G------------------TGT----GT................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGATGACC-------------------------G----GATGTTTCG-------------------------------------GC----2411.00100100000000
droEre2
AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACAC----------TTAAGT-------------TTATCCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGAC---CGCGT----------------------------------------------GTGTGT----------------------GTGTGTAAGTAGTT-------------------------------------------------------------------------------------ATAGATCGTAAAACGG---------------TGCGGA----TTTATCGCGGACTATT-----GCTATT---------CGATCGTAGCTTGGATGACC-------------------------G----GATGTTTCGGCCAAGCG--------------------------AGTGC----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................GAGGCATTAAAAGCACACCGTGTTAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTATT-----GCTATT---------CGATCGTAGCTT..........................................................................................2311.0011000000

Generated: 05/19/2015 at 07:07 PM