ID:

dvi_15120

 Coordinate:

scaffold_13047:1560466-1560652 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8876:4]; CDS [Dvir\GJ23531-cds]; CDS [Dvir\GJ23531-cds]; exon [dvir_GLEANR_8876:3]; intron [Dvir\GJ23531-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAGAGCCTATGGCCAATGTGAGCACTGAGGCAATAACGGGAACATTCATGTAAGTGGTATTAAGACCTTTGGTAGGGGCAGTAAATGCGAATGCAGATCTTCTAATGATTGTGTTCTTAATTATAAATATATCATTAAGCAAATACCAACTATACATCAATAAATTTTTTAATTACCCATCTTTGACTGAAATATTCAAAAAACATTAATTGAAAATTATTACACTATACTTTCAGTGATATGCTAGAGAGTGGAGCCAGTGTCAATTTCTACATGTTTTATGGTG
**************************************************((((((((((((....((((....))))(((.....))).(((((((.((.......)))))))))((((((.(((....))).))))))..)))))).))).)))...(((((..((((((((((......(((((.........)))))......)))))))))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060681
Argx9_testes_total
........................................................................................................................................................................................................................................................AGAGTGGAGCCAGTGTTA..................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GAGTGGAGCCAGTGTTAA.................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...GAGCCTATGGCCAATGTGAGCACTG................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............CAATGTGAGCACTGAGGC............................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CATTGATATGCTAGAGAGTGGAGCC............................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................ATTGATATGCTAGAGATTGG................................ 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AAGAGTGGAGCCAGTGTTA..................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CATTCATTGATATGCTAGA...................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................ATTGATATGCTAGAGATTGGT............................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................TAAGACATATGGTAGGGG................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................GACTCAAGCATTCAAAAAACAT................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................GGTATTAAGATCTTGGGTAA................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................CTACATCAATAAATTTTC..................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAAAAAATTTTTTAATTACC............................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTCTCGGATACCGGTTACACTCGTGACTCCGTTATTGCCCTTGTAAGTACATTCACCATAATTCTGGAAACCATCCCCGTCATTTACGCTTACGTCTAGAAGATTACTAACACAAGAATTAATATTTATATAGTAATTCGTTTATGGTTGATATGTAGTTATTTAAAAAATTAATGGGTAGAAACTGACTTTATAAGTTTTTTGTAATTAACTTTTAATAATGTGATATGAAAGTCACTATACGATCTCTCACCTCGGTCACAGTTAAAGATGTACAAAATACCAC
**************************************************((((((((((((....((((....))))(((.....))).(((((((.((.......)))))))))((((((.(((....))).))))))..)))))).))).)))...(((((..((((((((((......(((((.........)))))......)))))))))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
.....................................................................................TACTCTTCCGTCTAGAAGAT...................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0
.....................................................................................................................................................................AAAAAATTAATGGGTAAAAATT.................................................................................................... 22 2 3 0.33 1 0 1 0
.....................................................................................................................................................................AAAAAATTATTGGGTAGAACAT.................................................................................................... 22 3 6 0.17 1 0 0 1
..........................ACTTCGTTAGTGCCCTTGCA................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:1560416-1560702 - dvi_15120 ACAGAGC-----CTATGGCCAATGTGAGCACTGAGGCAATAACGGGAACATTCATGTAA-----GTGGTA-----------------------------------------------TTAAG--------------------------------------------------------------------------------------------------------ACCTTTGGT--------------------------------------------------------------------------------------------------AGG--------------------GGCAGTAA------------------------------------------------ATGCGAATGCAGATCTTCTAATGATTGTGTTCTTAATTATAA-------------------------------------------------------------AT----------------------------------------------------------------------------ATATCATTAAGC--------------------AAATACCAACT---A------------------------------------------TACATCAATAAATTT--------------------------------------------------------------------------------------------------------------------TTTAATTACCCAT----CTTTGACTGAAATAT------------------------------------TCAAAAAACATTAATTGA-AAATTATTACACT-------ATACTTTCAGTGATATGCTAGAGAGTGGAGCCAGTGTCAATTTCTACATGTTTTATGGTG
droMoj3 scaffold_6540:5656856-5656918 - C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------------------------------------ACTTTCCAGAGACATGCTTGATAGCGGAGCCAGCGTCAATTTCTACATGTTTTATGGTG
droGri2 scaffold_14924:4604-5003 + ACAGAAC-----CAATGGCCAACGTGAGCACAGACTCAATAACGGGCACATTTATGTAA-----GCATCAAATTT-------------------------------TTG-CTTTGTTTTAA--------TTTTAATTTGGATATTT---------------------------------------TTGTCAAATTTCT-------AC-------------TGTGAAACTCTTGAA--------------------------------------------------------------------------------------------------AGGTTTGCTGGAATTT-------------------------------------------------------CGTGGAAAACGCAAAT---GATTTTCGAATGAG---------------AA-------------------------------------------------------------AT----------------------------------------------------------------------------ATTTTTTTGAGCTTTTTTTTTTTACTTAAACTTAATACTATCACTTGCATTCATTGATTCTCCTGTTAAACAGTTTGATGTG-----------------------GCCTTAAAATGATTTATGAAACATTAGTGAAAGTAAATGAAAT--------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATATTTTCTAACAAATTATTATGATATCCTTGAATCTTGCAGTGATATGCTGGAGAGTGGAGCCAGTGTCAATTTTTATATGTTCTATGGCG
droWil2 scf2_1100000004902:2197976-2198027 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACATGTTGGAAAGCGGAGCCAGTGTGAATTTCTATATGTTCTATGGTG
dp5 2:22584936-22584991 + ACGGAGC-----CCATGGCCAATGTGAGCACGAACTCGATTACTGGAACTTTTATGTAA-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:5360110-5360165 + ACGGAGC-----CCATGGCCAATGTGAGCACGAACTCGATTACTGGAACTTTTATGTAA-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:4581489-4581544 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGTGACATGCTGGACAGCGGGGCCAGTGTCAACTTCTACATGTTCTATGGAG
droBip1 scf7180000395235:30018-30442 + ACAGAAC-----CGATGGCTAATGTGAGCACGGATTCGATCACGGGGACTTTCGTGTGA-----GTATTCA---------------------------------------------------------------T----------------------------------T----------------------------GACATTTATTGTATAGGAACTATGGAAAATTCTTGAACTTAAGAATCTAGACAAAGAACCATTCATTTATCATTCATCCCATCATTTTCTTCCTTAAGTGACGCATATTGTCACGTTGCACTTTATTGAAAC---AGACTTATTGGCATTG-------------------------------------------------------TAGGGTAAATAAGAAT---AATT-------------------------------------------------------ATATA---TGTCCGGTACTTGCAAA---------------AAA-----AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTAC----------------------------------------------------ATTCGATTTGCGTATTTTTAGAAATTGAAAACAAATTAAAATTTTATTTAAGTAGTAAATTAAGTAAATTTTATTTAATTTTATTTTATTTATTTTAACTT-----------------------------------------------------CTGTTTCAGTAACATGCTGGATAGTGGAGCCAGCGTCAACTTCTACATGTTCTATGGTG
droKik1 scf7180000302468:64405-64647 - CAGGAGCAAAACCAACGACG----G-GATGGCCAGGAGGTGGCCAATGCTCTGAAGTAA-----GTCTAG-----------------------------------------------------------------CTTAAATAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGCCAATGAA----------------ATTT-----TTTCA-AAAGATGCGGCAAAAATAATTTAACGTCACTTTCTCGAGAT--------------------------------TGCAACCATTATTATT----CTAAAAAGCCTGTCTTACTCACCATTT------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------------------------------------------------GAACAATTCCAGAACCATTCTTAGTTACAACGCCAGTGTCAACCTCTACATGTTCTTTGGTG
droFic1 scf7180000453813:35415-35725 + CAGGAGCAAAACCAGAGGCG----C-GATGGCCAAGAGGTGGCCAATGCGTTAAGGTAA-----GTTAAAA---------------------------------------------------------------CTTCGGGGTCC----------------GTAATCAAC----------------------------AATAA-----------------------------------------------------ACAATC----------------------ACCACTGCCAAATGGTGCAAATTCATTTTTT---------------AAGTCT--------------------AGTATTAT-----------------------------------------------ATTATATTTC-----------------------------------------------------------------------------------------------------CCTACTGTATTT----------------TTTT-----TTTTGGTTATGTGTT------------------------------------------------------------------------------------------------------------------------------------------CATAAGAGCGAAATGAAAGACAATTAAGTTAATAAAGCTGGCATT-GCACTGTGAATTTAATAAGCGTAT---------------------------------------------------------------------------------TTTTT-----------------------------------------------------CACTCACAGGACGATCCTTACATACAACGCGAGTGTCAACCTGTACATGTTCTTCGGCG
droEle1 scf7180000490399:29342-29718 - CAGGAGCAAAACCAAAGGCG----T-GATGGCCAAGAGGTAGCCGATGCTTTAAGGTGA-----GTTAAAT-------CATCCAT---AACTTATATCCAA-----------------AGAGAACTTTATTTCGATTCGGTA----------------------TGGAGTCACTCCAAG-----TCAATAGT--GTAC---------------------------------------------------------------------------------CCACTTTTATACCCA----------------------------------------------------------------------------ATCAAGCCATGTCCGTATGTCCTTCCGTTTAAGCGCA--------------------------------------------------------------------------------------AAGTTGTCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTGCTAAACCTAATTAATTATAAAAAA-------------------ATTATAATTATTTTTAACTTGGCGT----GTTCGAATGATATACTTTTATTATTTCTCTTTTACCATTTCACATAAGAAATAAAATAAAAT------------------------T-AAATGATTCCAGGACAATCCTTAGCTACAACGCCAGTGTTAATTTGTACATGTTCTTCGGGG
droRho1 scf7180000759866:5094-5490 + ACGGAAC-----CGATGGCCAATGTGAGCACAGGGTCAATCACTTCCACTTTCATGTAA-----GTTCAAG-TTTAATTGTCTACACTCGCTTAAATTAAATTAACTTGATTTTGTTTTAAG------TTTTTGATTTGGCG----------------------ATAAATTAGTACGTT-----TCAATCGA--TTGC---------------------------------------------------------------------------------ACTGTTTAAAAGTCAAA-------------------------------------A-----GATAAAATTTCATACAAAAAGCTTAATTCAAAACAAGTCTTAACTGACTCCCACTACGTTAATGACTAGGAAATCGCTAAT---GA----------------------------------------------------------------CTAGAAACTATCTTACTGAGTCAGACCTATCTTAATGACATGAAATAATACGATCTATACACTGTCTTAATTG------------------------AAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------ACTTT-----------------------------------------------------GTCTTCCAGAAATATGCTGGACAGTGGCGCCAGTGTCAACTTCTATATGTTCTACGGCG
droBia1 scf7180000302402:9991333-9991561 - ACCGAAC-----CCATGGCCAACGTGAGCACCCGATCGATTACTTCCACTTTTATGTAA-----GTTCAAG---------------------------------------------------------------TTTTGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------TGCTTTGT-----------------------------------------------AATTAAAATT-----------------------------------------------------------------------------------------------------CTTGCCCTCTAA----------------TTTG-----TTTCG-AAAATTGTT------------------------------------------------------------------------------------------------------------------------------------------TATG-----------------------ATTATAAGGAGTGCCTTT-ACAAACTAAGTTACTTATAAAAAC---------------------------------------------------------------------------------ATTTT-----------------------------------------------------ACCTTCCAGAAACATGCTGGACAACGGTGCCAGTGTCAACTTCTACATGTTCTACGGCG
droTak1 scf7180000415245:107320-107391 + ATAAATC-----CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----------------------------------------------------ACTTTCTAGAAACATGTTGGACAATGGTGCCAGTGTCAACTTCTACATGTTCTACGGCG
droEug1 scf7180000409615:45115-45366 + ACGGAAC-----CGATGGCCAATGTTAGCACGAGATCGATTACCTCAACTTTTATGTAA-----GTTATTA---------------------------------------------------------------GTTTGGGTTTATCCATATTCTGAGTACGTGATATATTATTTTGTTAAGTAACATTCTA--ATGC---------------------------------------------------------------------------------ATTG----------------------------------------------------------------------------------------------------------------------------------CCCTAAT---GA----------------------------------------------------------------CTAGTAACTATCTTAATTA-------CTGACTTAATGACAAGAAA----------------CTTT-----TTT------------------------AAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------ACTTT-----------------------------------------------------GTCTTCCAGAAACATGCTGGACAATGGTGCCAGTGTCAACTTCTACATGTTCTATGGAG
dm3 chr3R:7827866-7828069 + ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATTACTTCCACTTTTATGTAA-----GTTTCCA---------------------------------------------------------------ATTTGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GGCATTGAT------------------------------------------------TA---------------------T--------------TA--TGTGTTATTTAAAGAATTAATATATATTTATATATAATATCGTATATATAAC---------------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTT-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGCG
droSim2 3r:13279575-13279763 - ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATTACCTCCACTTTTATGTAA-----GTTTCTA---------------------------------------------------------------ATTTGGTT----------------------ATAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATAATAAATTATAAATTATAAT-----------TATAATATCGTATATATAAC---------------CAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTT-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGCG
droSec2 scaffold_0:14144939-14145150 - ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATAACCTCCACTTTTATGTAA-----GTTTCAA---------------------------------------------------------------ATTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GGCAATGATATAAATATCTG---------------------------------------------------------------------------TAG--TTGTTATTTAAAGAATTAATATATATTAATATATAATATCGTATAAATAAC---------------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTG-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGTG
droYak3 2L:13189028-13189270 + GCAGAAC-----CAAAGGCG----T-GATGGCCAGGAGGTGGCCAATGCGTTAAGGTAA-----GTGGAAA---------------------------------------------------------------ATACGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------GAAGATTACTTCGAAACCGGTTT-------------------------------------------------CGGGATGATTTCGGTTCTACCTGAAGTTAAGAAATTCGAAGGGATAAT-----CTTGTAAGCTATTCAGTATTCACAAC---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATTTACACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTCGGCG
droEre2 scaffold_4929:6095663-6095908 - GCAGAAC-----CAAAGGCG----T-GATGGCCAGGAGGTGGCCAATGCGTTAAGGTAACATAAGTTGAGA---------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGTTACTTCGAAACCGGTTT-------------------------------------------------CGGCCTGATTTCGGTTCTACCTGAAATTGTGAAATTCGAAGAGATTAT-----CTTGTAAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAGATAAGATTTTTCTTACAATGATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATT-TGACAATTCCAGGACAATTCTGAGCTACAACGCCAGCGTTAACCTGTATATGTTCTTCGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAGAGC-----CTATGGCCAATGTGAGCACTGAGGCAATAACGGGAACATTCATGTAA-----GTGGTA-----------------------------------------------TTAAG--------------------------------------------------------------------------------------------------------ACCTTTGGT--------------------------------------------------------------------------------------------------AGG--------------------GGCAGTAA------------------------------------------------ATGCGAATGCAGATCTTCTAATGATTGTGTTCTTAATTATAA-------------------------------------------------------------AT----------------------------------------------------------------------------ATATCATTAAGC--------------------AAATACCAACT---A------------------------------------------TACATCAATAAATTT--------------------------------------------------------------------------------------------------------------------TTTAATTACCCAT----CTTTGACTGAAATAT------------------------------------TCAAAAAACATTAATTGA-AAATTATTACACT-------ATACTTTCAGTGATATGCTAGAGAGTGGAGCCAGTGTCAATTTCTACATGTTTTATGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...GAGC-----CTATGGCCAATGTGAGCACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...................CAATGTGAGCACTGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
droMoj3
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------------------------------------ACTTTCCAGAGACATGCTTGATAGCGGAGCCAGCGTCAATTTCTACATGTTTTATGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAGAAC-----CAATGGCCAACGTGAGCACAGACTCAATAACGGGCACATTTATGTAA-----GCATCAAATTT-------------------------------TTG-CTTTGTTTTAA--------TTTTAATTTGGATATTT---------------------------------------TTGTCAAATTTCT-------AC-------------TGTGAAACTCTTGAA--------------------------------------------------------------------------------------------------AGGTTTGCTGGAATTT-------------------------------------------------------CGTGGAAAACGCAAAT---GATTTTCGAATGAG---------------AA-------------------------------------------------------------AT----------------------------------------------------------------------------ATTTTTTTGAGCTTTTTTTTTTTACTTAAACTTAATACTATCACTTGCATTCATTGATTCTCCTGTTAAACAGTTTGATGTG-----------------------GCCTTAAAATGATTTATGAAACATTAGTGAAAGTAAATGAAAT--------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATATTTTCTAACAAATTATTATGATATCCTTGAATCTTGCAGTGATATGCTGGAGAGTGGAGCCAGTGTCAATTTTTATATGTTCTATGGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCTGGAGAGTGGAGCCAGTGTC......................2720.50101
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTGGAGAGTGGAGC.............................1820.50110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGGAGCCAGTGTCA.....................1920.50101
...GAAC-----CAATGGCCAACGTGAGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50110
droWil2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACATGTTGGAAAGCGGAGCCAGTGTGAATTTCTATATGTTCTATGGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ACGGAGC-----CCATGGCCAATGTGAGCACGAACTCGATTACTGGAACTTTTATGTAA-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACGGAGC-----CCATGGCCAATGTGAGCACGAACTCGATTACTGGAACTTTTATGTAA-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................CGATTACTGGAACTTTTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGTGACATGCTGGACAGCGGGGCCAGTGTCAACTTCTACATGTTCTATGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACAGAAC-----CGATGGCTAATGTGAGCACGGATTCGATCACGGGGACTTTCGTGTGA-----GTATTCA---------------------------------------------------------------T----------------------------------T----------------------------GACATTTATTGTATAGGAACTATGGAAAATTCTTGAACTTAAGAATCTAGACAAAGAACCATTCATTTATCATTCATCCCATCATTTTCTTCCTTAAGTGACGCATATTGTCACGTTGCACTTTATTGAAAC---AGACTTATTGGCATTG-------------------------------------------------------TAGGGTAAATAAGAAT---AATT-------------------------------------------------------ATATA---TGTCCGGTACTTGCAAA---------------AAA-----AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTAC----------------------------------------------------ATTCGATTTGCGTATTTTTAGAAATTGAAAACAAATTAAAATTTTATTTAAGTAGTAAATTAAGTAAATTTTATTTAATTTTATTTTATTTATTTTAACTT-----------------------------------------------------CTGTTTCAGTAACATGCTGGATAGTGGAGCCAGCGTCAACTTCTACATGTTCTATGGTGSizeHit CountTotal NormTotal
No Reads
droKik1
CAGGAGCAAAACCAACGACG----G-GATGGCCAGGAGGTGGCCAATGCTCTGAAGTAA-----GTCTAG-----------------------------------------------------------------CTTAAATAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGCCAATGAA----------------ATTT-----TTTCA-AAAGATGCGGCAAAAATAATTTAACGTCACTTTCTCGAGAT--------------------------------TGCAACCATTATTATT----CTAAAAAGCCTGTCTTACTCACCATTT------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------------------------------------------------GAACAATTCCAGAACCATTCTTAGTTACAACGCCAGTGTCAACCTCTACATGTTCTTTGGTGSizeHit CountTotal NormTotal
No Reads
droFic1
CAGGAGCAAAACCAGAGGCG----C-GATGGCCAAGAGGTGGCCAATGCGTTAAGGTAA-----GTTAAAA---------------------------------------------------------------CTTCGGGGTCC----------------GTAATCAAC----------------------------AATAA-----------------------------------------------------ACAATC----------------------ACCACTGCCAAATGGTGCAAATTCATTTTTT---------------AAGTCT--------------------AGTATTAT-----------------------------------------------ATTATATTTC-----------------------------------------------------------------------------------------------------CCTACTGTATTT----------------TTTT-----TTTTGGTTATGTGTT------------------------------------------------------------------------------------------------------------------------------------------CATAAGAGCGAAATGAAAGACAATTAAGTTAATAAAGCTGGCATT-GCACTGTGAATTTAATAAGCGTAT---------------------------------------------------------------------------------TTTTT-----------------------------------------------------CACTCACAGGACGATCCTTACATACAACGCGAGTGTCAACCTGTACATGTTCTTCGGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CAGGAGCAAAACCAAAGGCG----T-GATGGCCAAGAGGTAGCCGATGCTTTAAGGTGA-----GTTAAAT-------CATCCAT---AACTTATATCCAA-----------------AGAGAACTTTATTTCGATTCGGTA----------------------TGGAGTCACTCCAAG-----TCAATAGT--GTAC---------------------------------------------------------------------------------CCACTTTTATACCCA----------------------------------------------------------------------------ATCAAGCCATGTCCGTATGTCCTTCCGTTTAAGCGCA--------------------------------------------------------------------------------------AAGTTGTCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTGCTAAACCTAATTAATTATAAAAAA-------------------ATTATAATTATTTTTAACTTGGCGT----GTTCGAATGATATACTTTTATTATTTCTCTTTTACCATTTCACATAAGAAATAAAATAAAAT------------------------T-AAATGATTCCAGGACAATCCTTAGCTACAACGCCAGTGTTAATTTGTACATGTTCTTCGGGGSizeHit CountTotal NormTotal
No Reads
droRho1
ACGGAAC-----CGATGGCCAATGTGAGCACAGGGTCAATCACTTCCACTTTCATGTAA-----GTTCAAG-TTTAATTGTCTACACTCGCTTAAATTAAATTAACTTGATTTTGTTTTAAG------TTTTTGATTTGGCG----------------------ATAAATTAGTACGTT-----TCAATCGA--TTGC---------------------------------------------------------------------------------ACTGTTTAAAAGTCAAA-------------------------------------A-----GATAAAATTTCATACAAAAAGCTTAATTCAAAACAAGTCTTAACTGACTCCCACTACGTTAATGACTAGGAAATCGCTAAT---GA----------------------------------------------------------------CTAGAAACTATCTTACTGAGTCAGACCTATCTTAATGACATGAAATAATACGATCTATACACTGTCTTAATTG------------------------AAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------ACTTT-----------------------------------------------------GTCTTCCAGAAATATGCTGGACAGTGGCGCCAGTGTCAACTTCTATATGTTCTACGGCGSizeHit CountTotal NormTotal
No Reads
droBia1
ACCGAAC-----CCATGGCCAACGTGAGCACCCGATCGATTACTTCCACTTTTATGTAA-----GTTCAAG---------------------------------------------------------------TTTTGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------TGCTTTGT-----------------------------------------------AATTAAAATT-----------------------------------------------------------------------------------------------------CTTGCCCTCTAA----------------TTTG-----TTTCG-AAAATTGTT------------------------------------------------------------------------------------------------------------------------------------------TATG-----------------------ATTATAAGGAGTGCCTTT-ACAAACTAAGTTACTTATAAAAAC---------------------------------------------------------------------------------ATTTT-----------------------------------------------------ACCTTCCAGAAACATGCTGGACAACGGTGCCAGTGTCAACTTCTACATGTTCTACGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
ATAAATC-----CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----------------------------------------------------ACTTTCTAGAAACATGTTGGACAATGGTGCCAGTGTCAACTTCTACATGTTCTACGGCGSizeHit CountTotal NormTotal
No Reads
droEug1
ACGGAAC-----CGATGGCCAATGTTAGCACGAGATCGATTACCTCAACTTTTATGTAA-----GTTATTA---------------------------------------------------------------GTTTGGGTTTATCCATATTCTGAGTACGTGATATATTATTTTGTTAAGTAACATTCTA--ATGC---------------------------------------------------------------------------------ATTG----------------------------------------------------------------------------------------------------------------------------------CCCTAAT---GA----------------------------------------------------------------CTAGTAACTATCTTAATTA-------CTGACTTAATGACAAGAAA----------------CTTT-----TTT------------------------AAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------ACTTT-----------------------------------------------------GTCTTCCAGAAACATGCTGGACAATGGTGCCAGTGTCAACTTCTACATGTTCTATGGAGSizeHit CountTotal NormTotal
No Reads
dm3
ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATTACTTCCACTTTTATGTAA-----GTTTCCA---------------------------------------------------------------ATTTGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GGCATTGAT------------------------------------------------TA---------------------T--------------TA--TGTGTTATTTAAAGAATTAATATATATTTATATATAATATCGTATATATAAC---------------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTT-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..GGAGC-----CGATGGCCAATGTTAGCACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTTAGCACCCAATCGATTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTTAGCACCCAATCGATTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCACCCAATCGATTACTTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGTGTGAACTTCTACATGTTC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATGGTGCCAGTGTGAACTTC................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATGTTAGCACCCAATCGATTACTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGATTACTTCCACTTTTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATGGTGCCAGTGTGAA....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
......C-----CGATGGCCAATGTTAGCACCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAAAGAATTAATATATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGGTGCCAGTGTGAACTTCTACAT...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATATATATTTATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATTACCTCCACTTTTATGTAA-----GTTTCTA---------------------------------------------------------------ATTTGGTT----------------------ATAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATAATAAATTATAAATTATAAT-----------TATAATATCGTATATATAAC---------------CAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTT-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACGGAGC-----CGATGGCCAATGTTAGCACCCAATCGATAACCTCCACTTTTATGTAA-----GTTTCAA---------------------------------------------------------------ATTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GGCAATGATATAAATATCTG---------------------------------------------------------------------------TAG--TTGTTATTTAAAGAATTAATATATATTAATATATAATATCGTATAAATAAC---------------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTG-----------------------------------------------------GGCTTCCAGAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................GTAA-----GTTTCAA---------------------------------------------------------------ATTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.................GCCAATGTTAGCACCCAATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
droYak3
GCAGAAC-----CAAAGGCG----T-GATGGCCAGGAGGTGGCCAATGCGTTAAGGTAA-----GTGGAAA---------------------------------------------------------------ATACGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------GAAGATTACTTCGAAACCGGTTT-------------------------------------------------CGGGATGATTTCGGTTCTACCTGAAGTTAAGAAATTCGAAGGGATAAT-----CTTGTAAGCTATTCAGTATTCACAAC---------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATTTACACAATTCCAGGACAATTCTGAGCTACAACGCCAGTGTTAACCTCTATATGTTCTTCGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................CAGGAGGTGGCCAATGCGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.00400000040000
..AGAAC-----CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACGCCAGTGTTAACCT.................2112.00200000020000
...............................CCAGGAGGTGGCCAATGCGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
................................CAGGAGGTGGCCAATGCGTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
.............AAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
......C-----CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000110000
..AGAAC-----CAAAGGCG----T-GATGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
............CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
.............AAAGGCG----T-GATGGCCAGGAGGTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...............AGGCG----T-GATGGCCAGGAGGTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......C-----CAAAGGCG----T-GATGGCCAGGAGGTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..AGAAC-----CAAAGGCG----T-GATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......C-----CAAAGGCG----T-GATGGCCAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
............CAAAGGCG----T-GATGGCCAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTACAACGCCAGTGTTAACCT.................2511.00101000000000
............CAAAGGCG----T-GATGGCCAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
................GGCG----T-GATGGCCAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....AC-----CAAAGGCG----T-GATGGCCAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...GAAC-----CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...........................ATGGCCAGGAGGTGGCCAATGCGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..............................GCCAGGAGGTGGCCAATGCGTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................GGTGGCCAATGCGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
................GGCG----T-GATGGCCAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.CAGAAC-----CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCCA...........................2311.00101000000000
GCAGAAC-----CAAAGGCG----T-GAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................GTGGCCAATGCGTTAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................GATGGCCAGGAGGTGGCCAATGCGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGCCAGTGTTAACCT.................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTACAACGCCAGTGTTAACCT.................2411.00101000000000
droEre2
GCAGAAC-----CAAAGGCG----T-GATGGCCAGGAGGTGGCCAATGCGTTAAGGTAACATAAGTTGAGA---------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGTTACTTCGAAACCGGTTT-------------------------------------------------CGGCCTGATTTCGGTTCTACCTGAAATTGTGAAATTCGAAGAGATTAT-----CTTGTAAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAGATAAGATTTTTCTTACAATGATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCATT-TGACAATTCCAGGACAATTCTGAGCTACAACGCCAGCGTTAACCTGTATATGTTCTTCGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....AC-----CAAAGGCG----T-GATGGCCAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTACAACGCCAGC.........................1811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTCTGAGCTACAACGCC............................2211.0010000010
GCAGAAC-----CAAAGGCG----T-GATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...........................ATGGCCAGGAGGTGGCCAATGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.............AAAGGCG----T-GATGGCCAGGAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGAGCTACAACGCCAGC.........................2211.0010000100

Generated: 05/19/2015 at 07:06 PM