ID:

dvi_14928

 Coordinate:

scaffold_13047:688695-688845 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.0 -15.6 -15.5

Flybase annnotation

exon [dvir_GLEANR_8979:2]; CDS [Dvir\GJ23641-cds]; intron [Dvir\GJ23641-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCTTTCATAAAACACGTGACACACACAAACACACACCTGCACACCCACACACACACACACACACACACACACACAACAGAAACAGACAGATAATGTCATATAATTGCATATCTCTGCCTTTGTCTAACAAATGTAATTAATGTAATTTTCAGTTGTATCATTAATCTAATGTAATTTTTTTTACCTCTATTTCGTTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACAAT
**************************************************.......................(((((.((((..((((.....)))).....(((((((.....(((.(((((...))))).)))....))))))))))).)))))..............((((......))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 SRR1106730
embryo_16-30h
 V053
head
 GSM1528803
follicle cells		 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060668
160x9_males_carcasses_total
...............................................................................................................................................................................TTTTTTTTACCTCTATTTCGTTTTAG.................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CCGGTGAGTCAGTTTGTTC.................................. 19 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................TGTAATTTTTTTTAGCTGTATT........................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................TTTGAGGTGAGTAAGTTTGGT................................... 21 3 18 0.11 2 0 0 0 0 1 1 0
...................................................................................................................................................................................................................TTTTTTTGGAATTGAGGTTGG................... 21 3 19 0.11 2 0 0 0 2 0 0 0
..........................................CACCCACACACACACACACACA........................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

ACGAAAGTATTTTGTGCACTGTGTGTGTTTGTGTGTGGACGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCTTTGTCTGTCTATTACAGTATATTAACGTATAGAGACGGAAACAGATTGTTTACATTAATTACATTAAAAGTCAACATAGTAATTAGATTACATTAAAAAAAATGGAGATAAAGCAAAATCCACTCAGTCAAACAAGACCTTAACTCCAACTTTAACTTTTATTATTGTTA
**************************************************.......................(((((.((((..((((.....)))).....(((((((.....(((.(((((...))))).)))....))))))))))).)))))..............((((......))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060656
9x160_ovaries_total
 V053
head
................................................................................................................................................................................................AGGAAAATCCAGTTAGTCAAA...................................... 21 3 5 0.20 1 0 1 0 0 0 0
..............................................................................................................................................................................AAAAAAAAATGGAGATTAAG......................................................... 20 2 15 0.13 2 1 0 1 0 0 0
...............................................................................................................................................................................AAAAAAATTGGAGATTAAG......................................................... 19 2 8 0.13 1 1 0 0 0 0 0
.....................TGTGTGTTTGTGTGTGGA.................................................................................................................................................................................................................... 18 0 9 0.11 1 0 0 0 1 0 0
.................................................................................................................................................................................AAAAAATAGAGGTAAAGCAA...................................................... 20 2 13 0.08 1 0 0 0 0 1 0
..........TTTGGGGACTTTGTGTGTTTGT........................................................................................................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 1
..................................................................................................................................................................................AAAAAAGGAGATAAAGGAAAA.................................................... 21 2 15 0.07 1 1 0 0 0 0 0
................................................................................................................................................................................AAAAAAATGGAGCCAAAG......................................................... 18 2 17 0.06 1 0 0 1 0 0 0
..................................................................................................................................................................................AAAAATGGAGATTAAGAA....................................................... 18 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:688645-688895 + dvi_14928 TGCTTTCATAAAA-CACGTGACACACACAAACACACA--C----------------------------CTGCACACC--------------CACACACACA------CACACACACA--CACACACACA--AC-A----GAA---------------ACAG---ACAGA----------T---------------------------------------------------------------------------------------------------AATGTC-----------------------------------------ATATAATTGCA------TATCTCTGCCTTTGTCT------AA----------------------------------------------------------------------------CAAATGTAATTAATGTAATTTTC--A--GTTGTATCATT---------------------AA----------------------------------------TCTAATGT----AAT--------------------TT-TTTTT------------------------A-C-----C------TCTA------TTTC---GTTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-AT
droMoj3 scaffold_6540:4678233-4678440 + CTCA---------------------CACACCCACCCA--C----------------------------ACACACACA----CA--CGCACAT------A--CA--CATACTTTGACT--G-----------------------------------------------------------------ACG-----------------------------------------------------------------------------------------------TC-----------------------------------------AGCTCACTGCA------TATCTTAGCCGTTGTCT------AA----TATATAATTCAAGTGAATTGA---------------------------------------------------CAAATGTAACTAATGCC--------------------------------------------------------------------------------------------------ATG-CTTG-T------------TTCTCTC------------------------------CATCTCTG------------TTTC---ATTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-AT
droGri2 scaffold_14906:5638440-5638684 - TGTC------T--------------GACATACACACA--C----------------------------ACAGACACA----CA--CACACAC------A--CA--CATATGTACACC--CGTG--------------------------------------------------------------ACG-----------------------------------------------------------------------------------------------TC-----------------------------------------AGCTAGTTGCTTGCTACTATCTTTGCCTTTGTCG------AA---TTATGTAA--------------------------------------------------------------------------TTGATGTAATT-----------GT-----------------------------ATTTTAATTTTTTTTTTTGGTTTTTTGCCCATCTAATGTATCTAATGTATAA-ATG----------------------TATT------------------------------TATTTCTG------------TTTC---GTTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-AT
droWil2 scf2_1100000004902:9728745-9728963 - AGGT---------------------GTCGCTACGGCATATG---ACATTATTCTTTACCTTCAAACATA-ATAAACA----CA--CACACAG------A--CA--TATACTCGTTTG--TATATT-------------------------TAGAAAAT------------------------------------AATGC-----------------------------ATAATTTCATATTTATATATCA------ATGC----------------------T-ATATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAATTGGATAT-----------------------TT-TGTTT------------------------T-T-----G------TTTT------TCTC---ATTTCAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-AT
dp5 XR_group3a:81861-82077 + CACA---------------------CTCGCACGCACA--C----------------------------ACACACACA----CG--CACGCAC------A--CA--CGCC-----ACA------------------------------------AGCAACAC---ACATAAATA---------------------------TCCGTGGATATACTATTGTATATATTGTATATGTGCATATACATATGTACATATATAGCAGA---------------------------------------------------------------------------------------------------------------------------------------------TATACTA--CACCA-----------------------------------------------------------------------------------------------------------------------------TATA-----TGTATGC-ATATGTTTAG------------TA-CTGTTATTTACACGGCA-CGCACGTTCTTG-C-------------------------------------------CGCTTCTTCTCTTGTTGCTGTTGCACTT----------------
droPer2 scaffold_38:685695-685867 + CACA------AC--------------ACACACACACA--CACA------------------------CACACACACA----CA--CACA--CACACACACA------CACACACACA--CA----CACACACACA----CACACAC-----------ACAC---ACA---------------C--A--CA------------------------------------------------------------------------------------------------------------------------------------------C-ACACT-----------CGTATCCTGCCTCT------CA----TATGTGAA-----------------------------------------------------------------GA-------------------------------------------------G-------------------------------------------------------------------TGG-AGTGTCGCCTTTT-------TAATGGAATTTTAATGTA--TTTGGT-T--------TGGTT------------C---TTT---------------------------------------------------TT-C
droAna3 scaffold_13337:18629891-18630071 - TTCG----TATCA-GAAGAGACCCTCACA----AACA--CACA------------------------CACTCACACACACACTCACA----------CACA------CACTCACACA--CA----CACA--TTCA----CACACACTCTT----GTAGAAAGCA---TTATAGCCTTG-------ACC----------------------------------------------------------------------------------------------T-CTACAATCT----------------------------------------------------------------------------------ACAA-AC------TGCGGCTAATG-----T----TC-------------------------------------------------------T--C--TCTGAATGGTT---------------------GG---------------------------------------------ATT----------------------------T-CTTTT------------------------T-C-----T-----TT-TT------ATTT----TT---------------------------------------------------TT-T
droBip1 scf7180000396359:410862-410945 + TAAT---------------------CTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-CTGTT------------------------C-T-----T------TTCT------TCCC---GTTTCAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-AT
droKik1 scf7180000302392:156673-156859 + CACA------CA--------------AAACACACTCA--C----------------------------ACACTCACA----CA--GACACAC------A--CACACACACA--CACA--A------------T--------------------CGCAACAC---ACAGG----------TA-CAGA--C-------------------------------------------------------------------------------------------------------------TGTACTTTTCGTCTCTTTTGGATATTTCTAC----------TAACTAACATTGCTGCATTTATGATTTTAATGT-CGAGAA-AC------C---GTT--------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------AAACATA--TTTTGG-TCACA-------CT---GTTTTT---TGTAACG--A------------------------------------------------G-AT
droFic1 scf7180000453882:1169271-1169472 - CATA------AAATTGCTCAACACACATACACACACA--C----------------------------ACACATACA----CA--CACACAC------A--------CATACACACA--CATACACACA--AC-A----AACA---------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------AGC----------ACACTAACATTGCATTAATCACCACTGAAAAAT-CAACAA-TC------AACAACAAAAACAACAATACCAC--GTCG-----------TCC--------------------------------T--T--CGCTGTG------------------------------------ATTTAT---------------------------------------------------------------------------------TTATCTA--TTTTTT-TGCTACTATTA------------TTTC----GT---------------------------------------------------TT-T
droEle1 scf7180000491008:1520846-1521023 + AATA------CA--------------TCACGCATATG--CACA------------------------CACTCCAGCA----CA--CC----CGCACACACA------CACCCATCCA--CA----CACA--TCCAG--T-----------TACAG------------------------------ATG------GCAAC-----------------------------TTAGGAGCATATGGATGT--------------------------------------------------------------------------------------------------------GCCGTTG-CA------AA----CACATG-CTCAATTGAATTGA---------------------------------------------------AA-----------TTGAATTTGC--A--ATTCTATG-------------------CGCTGCA----------------------------------------GCTAACGC----CAT--------------------TT-TC-----------------------------------------------------------TTT---------------------------------------------------G-CC
droRho1 scf7180000779334:274400-274601 - AAAC------A-----CTCA------ACA----AACACACAGACACA--------------------TGCAGCACCA----CC--CC----CACACACACA------CACTCACACA--CACACACACA--CC-AG--T-----------GACA-------------------------------------------AGTTTTCTTCGTAGACGATGGAAA-----------------------AT--G----CTTA--------------------------T-------------CG-------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACT---------------------------------------------ATATAA------A------------------------------------CTAT----------G-AGAGCTTGA------GTTTTCC-------TAATTAAACTATAATATA--TTTTTT-TTCGA-------TT---TTTTTT---CGTACTTTTAAG-------------------------------------------------T
droBia1 scf7180000301141:1135-1217 - AAAC------A--------------CGCACACACACA--C----------------------------ACACACACG----CG--CACACACACACACACA------CACACACACA--CA----CACACACACA----CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-CA
droTak1 scf7180000415704:940180-940275 + ACAC--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CACA----------TA--CT-AGGTT-----------GACAGCAACAAAAA---CAAAGCGATGGCCATC-----------------------------------------------------------------------------------------------------------------------------------------------ACATCATCG---------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408900:151693-151850 + CACA---------------------CATACACAGCGA--G----------------------------CCACACACA----GA--TACACAC------A--CG--CACA----CAG--------C-------------------------TACAACAGAAAAGA---TAAATGCACTGCCA-A-------------------------------------------------------------AAATC--------------------------------------------GTAGCCTA-------------------------ATTTACCTCGC-------------------------------------------------------------------T----TT-------------------------------------------------------CAAC--GTTGTTGCCTT---------------------TA----------------------------------------AC---------------------------------------------------AAATATA--TTTTAT-TTCAA-------CT---TTAGTT---TTTATTC---------------------------------------------------TGTG
dm3 chr3L:21491719-21491862 + ACAC--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CCCC--CC--------------------------------TGCACCAA---AAAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATTTC-ATAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGTAAC-----T----TC-------------------------------------------------------C--C--GTTGTTTATTT---------------------AC---------------------------------------------ACTATGT-----------------------AC-TGTT-----------------------------------------------------CTTATTC---------------------------------------------------TC-T
droSim2 x:9685772-9685938 + GACA---------------------CGCACGCACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACACACACACA--CACACACACA--CCCA----CACA---------------------------------------------CCCACAC--------------------TCG-----------------CA----GTCACGTATGAATAGAGCATACATAGAAAGTTGGAAGAAATTTC-----------------------------------------ATTTAATTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAACGCC--TGTTGC-C--------TAGA---------------------------------------------------------------CGAATTTATT-T
droSec2 scaffold_9:1956648-1956781 + ACAT--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CACA--CACACACACA--AAGA----AACA---------------------------------------------CCAAAAGAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCTGATTGTGTGCGTGTGCGTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTACAAATTAGTTTAATTTAAATTAGA-GT
droYak3 3L:2622735-2622922 + GCGA---------------------AACACACACACA--C----------------------------ACATATACA----CA--CACACAC------A--CA--CATACTCATACA--CACACAGACA-----------------------CAGAAAGGAAGA---AGGAGCAACTTCTAAG-----------------------------------------------------------------------------------------------------------------------------------------------ACATGACCGCG------TGTCTCGGTGTTG----------------------------------------------------------------------------------AAGTGAAAAAT---------------------------------------------ATGTGA------A--------------------------------------------------------------ATTTAATTTTCC-------TAAGTGATTTTTCATGTA--ATTCGGCACCTGCTATTA------------TTTC---TTTTC----------------------------------------------------A
droEre2 scaffold_4690:14905848-14905989 + CACA---------------------CATACGCACGCA--C----------------------------GCACACACA----CA--CACACAC------A--CA--TACACA--CACACACACACACACA--CG-A--------------------------------------------------G---------------------------------------------------------------------------------------------------------------CGGA------------------------------------------------------------------------------------------------AC-----T----TACCATTATATTTTTATACATATATATTGT------------------------------------TTGTA---ATCTAAAAGCTA---------------------------------------------------------------------------------------------------------AGTAAA--TTTTAG-T--------TA------------TTTA----TT---------------------------------------------------A-GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCTTTCATAAAA-CACGTGACACACACAAACACACA--C----------------------------CTGCACACC--------------CACACACACA------CACACACACA--CACACACACA--AC-A----GAA---------------ACAG---ACAGA----------T---------------------------------------------------------------------------------------------------AATGTC-----------------------------------------ATATAATTGCA------TATCTCTGCCTTTGTCT------AA----------------------------------------------------------------------------CAAATGTAATTAATGTAATTTTC--A--GTTGTATCATT---------------------AA----------------------------------------TCTAATGT----AAT--------------------TT-TTTTT------------------------A-C-----C------TCTA------TTTC---GTTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------TT-TTTTT------------------------A-C-----C------TCTA------TTTC---GTTTTAG...................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................CACC--------------CACACACACA------CACACACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
CTCA---------------------CACACCCACCCA--C----------------------------ACACACACA----CA--CGCACAT------A--CA--CATACTTTGACT--G-----------------------------------------------------------------ACG-----------------------------------------------------------------------------------------------TC-----------------------------------------AGCTCACTGCA------TATCTTAGCCGTTGTCT------AA----TATATAATTCAAGTGAATTGA---------------------------------------------------CAAATGTAACTAATGCC--------------------------------------------------------------------------------------------------ATG-CTTG-T------------TTCTCTC------------------------------CATCTCTG------------TTTC---ATTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTC------------------------------CATCTCTG------------TTTC---..........................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGTTCTGGAATTGAGGT.......................2111.001000001
......................................................................................................................................................................................................................................................................................................................................AGCTCACTGCA------TATCTTAGCC..............................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................AAGTGAATTGA---------------------------------------------------CAAATGTAAC.........................................................................................................................................................................................................................................................2111.001000010
droGri2
TGTC------T--------------GACATACACACA--C----------------------------ACAGACACA----CA--CACACAC------A--CA--CATATGTACACC--CGTG--------------------------------------------------------------ACG-----------------------------------------------------------------------------------------------TC-----------------------------------------AGCTAGTTGCTTGCTACTATCTTTGCCTTTGTCG------AA---TTATGTAA--------------------------------------------------------------------------TTGATGTAATT-----------GT-----------------------------ATTTTAATTTTTTTTTTTGGTTTTTTGCCCATCTAATGTATCTAATGTATAA-ATG----------------------TATT------------------------------TATTTCTG------------TTTC---GTTTTAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGGT---------------------GTCGCTACGGCATATG---ACATTATTCTTTACCTTCAAACATA-ATAAACA----CA--CACACAG------A--CA--TATACTCGTTTG--TATATT-------------------------TAGAAAAT------------------------------------AATGC-----------------------------ATAATTTCATATTTATATATCA------ATGC----------------------T-ATATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAATTGGATAT-----------------------TT-TGTTT------------------------T-T-----G------TTTT------TCTC---ATTTCAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTGGAATTGAGGTTGAA...................2112.00200200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTGGAATTGAGGTTGAAATT................2511.00100010
...T---------------------GTCGCTACGGCATATG---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTGAAATTGAAAATAATA......2511.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCAGTTTGTTCC..................................1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCAGTTTGTTCTGGAATTGAGGT.......................2611.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATTGAGGTTGAAATTGAAAA...........2511.00100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAGGTTGAAATTGAA.............1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTGTTCTGGAATTGAGGT.......................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGTTCTGGAATTGAGGTTGAAAT.................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCAGTTTGTTCTGGAAT.............................2211.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGAATTGAGGTTGAAATTGAAA............2711.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTTGAAATTGAAAA...........1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTCTGGAATTGAGG........................1911.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTGGAATTGAGGTTGAAA..................2311.00100100
dp5
CACA---------------------CTCGCACGCACA--C----------------------------ACACACACA----CG--CACGCAC------A--CA--CGCC-----ACA------------------------------------AGCAACAC---ACATAAATA---------------------------TCCGTGGATATACTATTGTATATATTGTATATGTGCATATACATATGTACATATATAGCAGA---------------------------------------------------------------------------------------------------------------------------------------------TATACTA--CACCA-----------------------------------------------------------------------------------------------------------------------------TATA-----TGTATGC-ATATGTTTAG------------TA-CTGTTATTTACACGGCA-CGCACGTTCTTG-C-------------------------------------------CGCTTCTTCTCTTGTTGCTGTTGCACTT----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CACA------AC--------------ACACACACACA--CACA------------------------CACACACACA----CA--CACA--CACACACACA------CACACACACA--CA----CACACACACA----CACACAC-----------ACAC---ACA---------------C--A--CA------------------------------------------------------------------------------------------------------------------------------------------C-ACACT-----------CGTATCCTGCCTCT------CA----TATGTGAA-----------------------------------------------------------------GA-------------------------------------------------G-------------------------------------------------------------------TGG-AGTGTCGCCTTTT-------TAATGGAATTTTAATGTA--TTTGGT-T--------TGGTT------------C---TTT---------------------------------------------------TT-CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTCG----TATCA-GAAGAGACCCTCACA----AACA--CACA------------------------CACTCACACACACACTCACA----------CACA------CACTCACACA--CA----CACA--TTCA----CACACACTCTT----GTAGAAAGCA---TTATAGCCTTG-------ACC----------------------------------------------------------------------------------------------T-CTACAATCT----------------------------------------------------------------------------------ACAA-AC------TGCGGCTAATG-----T----TC-------------------------------------------------------T--C--TCTGAATGGTT---------------------GG---------------------------------------------ATT----------------------------T-CTTTT------------------------T-C-----T-----TT-TT------ATTT----TT---------------------------------------------------TT-TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTT---------------------GG---------------------------------------------ATT----------------------------T-CTTTT------------------------T-T-----..................................................................................2011.001100000
droBip1
TAAT---------------------CTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-CTGTT------------------------C-T-----T------TTCT------TCCC---GTTTCAGGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAATAACA-ATSizeHit CountTotal NormTotal
No Reads
droKik1
CACA------CA--------------AAACACACTCA--C----------------------------ACACTCACA----CA--GACACAC------A--CACACACACA--CACA--A------------T--------------------CGCAACAC---ACAGG----------TA-CAGA--C-------------------------------------------------------------------------------------------------------------TGTACTTTTCGTCTCTTTTGGATATTTCTAC----------TAACTAACATTGCTGCATTTATGATTTTAATGT-CGAGAA-AC------C---GTT--------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------AAACATA--TTTTGG-TCACA-------CT---GTTTTT---TGTAACG--A------------------------------------------------G-ATSizeHit CountTotal NormTotal
No Reads
droFic1
CATA------AAATTGCTCAACACACATACACACACA--C----------------------------ACACATACA----CA--CACACAC------A--------CATACACACA--CATACACACA--AC-A----AACA---------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------AGC----------ACACTAACATTGCATTAATCACCACTGAAAAAT-CAACAA-TC------AACAACAAAAACAACAATACCAC--GTCG-----------TCC--------------------------------T--T--CGCTGTG------------------------------------ATTTAT---------------------------------------------------------------------------------TTATCTA--TTTTTT-TGCTACTATTA------------TTTC----GT---------------------------------------------------TT-TSizeHit CountTotal NormTotal
No Reads
droEle1
AATA------CA--------------TCACGCATATG--CACA------------------------CACTCCAGCA----CA--CC----CGCACACACA------CACCCATCCA--CA----CACA--TCCAG--T-----------TACAG------------------------------ATG------GCAAC-----------------------------TTAGGAGCATATGGATGT--------------------------------------------------------------------------------------------------------GCCGTTG-CA------AA----CACATG-CTCAATTGAATTGA---------------------------------------------------AA-----------TTGAATTTGC--A--ATTCTATG-------------------CGCTGCA----------------------------------------GCTAACGC----CAT--------------------TT-TC-----------------------------------------------------------TTT---------------------------------------------------G-CCSizeHit CountTotal NormTotal
No Reads
droRho1
AAAC------A-----CTCA------ACA----AACACACAGACACA--------------------TGCAGCACCA----CC--CC----CACACACACA------CACTCACACA--CACACACACA--CC-AG--T-----------GACA-------------------------------------------AGTTTTCTTCGTAGACGATGGAAA-----------------------AT--G----CTTA--------------------------T-------------CG-------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACT---------------------------------------------ATATAA------A------------------------------------CTAT----------G-AGAGCTTGA------GTTTTCC-------TAATTAAACTATAATATA--TTTTTT-TTCGA-------TT---TTTTTT---CGTACTTTTAAG-------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
AAAC------A--------------CGCACACACACA--C----------------------------ACACACACG----CG--CACACACACACACACA------CACACACACA--CA----CACACACACA----CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-CASizeHit CountTotal NormTotal
No Reads
droTak1
ACAC--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CACA----------TA--CT-AGGTT-----------GACAGCAACAAAAA---CAAAGCGATGGCCATC-----------------------------------------------------------------------------------------------------------------------------------------------ACATCATCG---------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CACA---------------------CATACACAGCGA--G----------------------------CCACACACA----GA--TACACAC------A--CG--CACA----CAG--------C-------------------------TACAACAGAAAAGA---TAAATGCACTGCCA-A-------------------------------------------------------------AAATC--------------------------------------------GTAGCCTA-------------------------ATTTACCTCGC-------------------------------------------------------------------T----TT-------------------------------------------------------CAAC--GTTGTTGCCTT---------------------TA----------------------------------------AC---------------------------------------------------AAATATA--TTTTAT-TTCAA-------CT---TTAGTT---TTTATTC---------------------------------------------------TGTGSizeHit CountTotal NormTotal
No Reads
dm3
ACAC--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CCCC--CC--------------------------------TGCACCAA---AAAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATTTC-ATAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGTAAC-----T----TC-------------------------------------------------------C--C--GTTGTTTATTT---------------------AC---------------------------------------------ACTATGT-----------------------AC-TGTT-----------------------------------------------------CTTATTC---------------------------------------------------TC-TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................AAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1863.17190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATCACGTAAC-----T----TC-------------------------------------------------------C--C--GTTGTTTATT.............................................................................................................................................................................................................................2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CACCAA---AAAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATTTC-ATAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................2731.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................2131.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTTC-ATAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGT...................................................................................................................................................................................................................................................................................................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AAAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1960.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGTAAC-----T----......................................................................................................................................................................................................................................................................................................2450.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------ACTATGT-----------------------AC-TGTT-----------------------------------------------------CTTATT........................................................2060.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGGAATG---------------------------------------------------------------------------------------------------TTCAAGAAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................1960.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCACGTAAC-----T----TC-------------------------------------------------------C--C--GTTGTTT................................................................................................................................................................................................................................2130.3310000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTTC-ATAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGTA..................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATTTC-ATAATTTG--------------------------------------CTGCC---------------------------------------------------TATCACG....................................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------------AC---------------------------------------------ACTATGT-----------------------AC-TGTT-----------------------------------------------------C.............................................................1830.3310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CC---------------------------------------------------TATCACGTAAC-----T----TC-------------------------------------------------------C--C--GTT....................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TG--------------------------------------CTGCC---------------------------------------------------TATCACGTAAC-----T----TC-------------------------------------------------------C--C--.......................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AATTTG--------------------------------------CTGCC---------------------------------------------------TATCACGT...................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------------------------------------------C--C--GTTGTTTATTT---------------------AC---------------------------------------------A.......................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGT-----------------------AC-TGTT-----------------------------------------------------CTTATTC---------------------------------------------------T...2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGT-----------------------AC-TGTT-----------------------------------------------------CTTATTC---------------------------------------------------TC-.2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-----------------------AC-TGTT-----------------------------------------------------CTTATTC---------------------------------------------------TC-T2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CA--CACACAC------A--CA--CACA----CCCC--C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACACACA--C----------------------------ACACACACA----CA--CACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACAC--------------------ACACACACACACA--C----------------------------ACACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACACACACACACA--C----------------------------ACACACACA----C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AC--------------------ACACACACACACA--C----------------------------ACACACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ACA----CA--CACACAC------A--CA--CACA----CCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACACACACA--C----------------------------ACACACACA----CA--CAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACACA--C----------------------------ACACACACA----CA--CACACAC------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACACACACACA--C----------------------------ACACACACA----CA--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GACA---------------------CGCACGCACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACACACACACA--CACACACACA--CCCA----CACA---------------------------------------------CCCACAC--------------------TCG-----------------CA----GTCACGTATGAATAGAGCATACATAGAAAGTTGGAAGAAATTTC-----------------------------------------ATTTAATTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAACGCC--TGTTGC-C--------TAGA---------------------------------------------------------------CGAATTTATT-TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................ACACACACA--CACACACACA--CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
droSec2
ACAT--------------------ACACACACACACA--C----------------------------ACACACACA----CA--CACACAC------A--CA--CACA----CACA--CACACACACA--AAGA----AACA---------------------------------------------CCAAAAGAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCTGATTGTGTGCGTGTGCGTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTACAAATTAGTTTAATTTAAATTAGA-GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................ACACACACACA--C----------------------------ACACACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
droYak3
GCGA---------------------AACACACACACA--C----------------------------ACATATACA----CA--CACACAC------A--CA--CATACTCATACA--CACACAGACA-----------------------CAGAAAGGAAGA---AGGAGCAACTTCTAAG-----------------------------------------------------------------------------------------------------------------------------------------------ACATGACCGCG------TGTCTCGGTGTTG----------------------------------------------------------------------------------AAGTGAAAAAT---------------------------------------------ATGTGA------A--------------------------------------------------------------ATTTAATTTTCC-------TAAGTGATTTTTCATGTA--ATTCGGCACCTGCTATTA------------TTTC---TTTTC----------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CACA---------------------CATACGCACGCA--C----------------------------GCACACACA----CA--CACACAC------A--CA--TACACA--CACACACACACACACA--CG-A--------------------------------------------------G---------------------------------------------------------------------------------------------------------------CGGA------------------------------------------------------------------------------------------------AC-----T----TACCATTATATTTTTATACATATATATTGT------------------------------------TTGTA---ATCTAAAAGCTA---------------------------------------------------------------------------------------------------------AGTAAA--TTTTAG-T--------TA------------TTTA----TT---------------------------------------------------A-GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................CACACACACA--CG-A--------------------------------------------------G---------------------------------------------------------------------------------------------------------------CGGA------------------------------------------------------------------------------------------------AC-----...........................................................................................................................................................................................................................................................................................................2011.0010000100
...............................................................................................................................CA--CG-A--------------------------------------------------G---------------------------------------------------------------------------------------------------------------CGGA------------------------------------------------------------------------------------------------AC-----T----TACCATT...............................................................................................................................................................................................................................................................................................2011.0010000100
..CA---------------------CATACGCACGCA--C----------------------------GCACACACA----CA--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
............................................................................................................................ACACA--CG-A--------------------------------------------------G---------------------------------------------------------------------------------------------------------------CGGA------------------------------------------------------------------------------------------------AC-----T----TACCATT...............................................................................................................................................................................................................................................................................................2311.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGT------------------------------------TTGTA---ATCTAAAAGCTA---------------------------------------------------------------------------------------------------------AGT....................................................................................................2711.0010100000
.....................................................................................CACACAC------A--CA--TACACA--CACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100

Generated: 05/17/2015 at 04:15 AM