ID:

dvi_14858

 Coordinate:

scaffold_13047:184710-184860 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.6 -25.4 -25.3

Flybase annnotation

exon [dvir_GLEANR_8952:5]; CDS [Dvir\GJ23613-cds]; intron [Dvir\GJ23613-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTATTTAAGGCACTTATTCCTCTTCATAGCCATTTAACAGACGAAGAAGGTAAGAAAACATAAAAAAACGTTTCATGAATAATGGGCAAATTGGCTTGGACGAAGAGGGAAGTCCGAATCTATGAAGTATATTTGTTCTTAAGCAAGATGTCGAATTGAGTCGATAAAGCCATGTCAGTAATCTGGGACTCGGAGCTAAGCTCTCCGCCTATCTTTCCATTTGTATGAACAAGTCATTTTTCGGCAATTT
**************************************************....................((((((.((......((((...((((((((((..........))))................((((((....)))))).((((((......)))))))))))))))).....))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060661
160x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106714
embryo_2-4h
 SRR060657
140_testes_total
 V116
male body		 SRR1106728
larvae
 SRR060662
9x160_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR1106730
embryo_16-30h
........................................GACGAAGAAGGTAAGAAAAC............................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CTTAAGGCACTTATTCCTCTTCATA.............................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................CCTCTTCATAGCCATTTAACAGACGAA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTCATAGCCATTTAACAGACGAAGAAGT........................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................CATAGCCATTTAACAGACGAAGAAGTT....................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATTTAACAGACGAAGAAGTTAAGC................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCCATTTAACAGACGAAGAAGTTAAGC................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CATGTCAGTAATCTGGGACT............................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCCATTTAACAGACGAAGAAGTT....................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....TTAAGGCACTTATTCCTCTTC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GCCATTTAACAGACGAAGAAGTT....................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATTTAACAGACGAAGAAGTT....................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATAGCCATTTAACAGACGAAGAA.......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CATAGCCATTTAACAGACGAAGAAG......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................TAGCCATTTAACAGACGAAGAAGT........................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AATAATGGGAAAATTGGCTTGGACGAA.................................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AATTGGCCGGGACGAAGAG............................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................AGGGAAGTCGGAATC.................................................................................................................................. 15 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................AGAAGGTAAGGACACATA............................................................................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TGTTAATCAAGATGTCGA................................................................................................ 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................AGCAAGAGGTAGAATTGAGA......................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................ATCATTAATCTGGGACT............................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................ATTAAGAGACGAAGAAGG........................................................................................................................................................................................................ 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................AGGGAAGTCGGAATCC................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................TAATCAAGATGTCGA................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAATAAATTCCGTGAATAAGGAGAAGTATCGGTAAATTGTCTGCTTCTTCCATTCTTTTGTATTTTTTTGCAAAGTACTTATTACCCGTTTAACCGAACCTGCTTCTCCCTTCAGGCTTAGATACTTCATATAAACAAGAATTCGTTCTACAGCTTAACTCAGCTATTTCGGTACAGTCATTAGACCCTGAGCCTCGATTCGAGAGGCGGATAGAAAGGTAAACATACTTGTTCAGTAAAAAGCCGTTAAA
**************************************************....................((((((.((......((((...((((((((((..........))))................((((((....)))))).((((((......)))))))))))))))).....))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 V116
male body		 SRR060666
160_males_carcasses_total
 M028
head
 SRR060671
9x160_males_carcasses_total
................................................................................................AACCTGCTTCTCCCTTCAGGCT..................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................CGCCTCGATTCGAGAGGCGGA........................................ 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................AACCTGCTGCTCCCTTCAGGCT..................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................GTCATTAGACCCTGAGTAGC....................................................... 20 3 2 0.50 1 0 0 1 0 0 0
........................................................................................................................................................................................................................AGGTACACATTCTTGTTCATT.............. 21 3 5 0.20 1 0 0 0 1 0 0
..........................................................................................................TCCCTTCAGGCTTGTAAAC.............................................................................................................................. 19 3 20 0.10 2 0 0 0 0 1 1
.................................................................................................ACTAGCTTCTCCATTCAGG....................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:184660-184910 + dvi_14858 GTTATTT----------------AAGGCACTTATTCCTC-----------------------------------TTCATAGCCATTTAA--CAGACGAAGAAGG-------TA-------AG-----------------AAAACATAAAAAAA------CGTTTCATGAATAATGGGCAAATTGGCTTGG------ACGAAGAGGGAAGTCCGAATCTATGAA-----GTATATTTGTTCTTAAGCAAGATGTCGAATTGAGTCGATAAAGCCATGTCAGTAA-TCTGGG--ACTCGGAGCTAAGCTCTC---------------CGCCTATCTTTCC----ATTT------------GTATGAA------------------CA----------AGTC-----AT------TTTTCGGCA---------ATT-------------------------------------------------------------T
droMoj3 scaffold_6540:1246835-1247072 + dmo_1763 ACTGTTT----------------AAGGCACTTATTCCTC-----------------------------------TTCATAGCCATTTAA--CTGAGGAAGAAGG-------TA-------AGTTTTTATACCCTAA-ACCAAAA--------TTATAATGGTT---------TTGTTGGAA-TGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCTCTCAAA-----GTATATATATTCTTGATTAGGGTGACGAGCTGAATTGATTTAGCCCTGTCTGTCTGTC---------------------------------------TGTCCGTCCGTCC----GTCT----TTCAGTATGTTTGAA------------------CG-------------------------------CGTCT---------ATT-------------------------------------------------------------T
droGri2 scaffold_15110:22772958-22773125 + AAAA--------------------------------------------------------------------------------------------------CG-------------------------------GTAAAAAGG--------GTATTATGGTT---------TTGTGCAAA-TGTATGTAACAGGCAGAAGGAAGTATCTCCGACCTCTCGAA-----GTACATATATTCTTGATCAGGATCTACAACCGAGTCGATATAGCCATGTTCGTCCGTC---------------------------------------CGTCGGTCCGTCC----ATCC------------ATAAAGA------------------C---TT-----------------------------CAA---------ATT-------------------------------------------------------------T
droWil2 scf2_1100000004883:174767-175005 + TT-TTGT----------------AAGTCCTTTATTCTTCTTCTTAATAGCGAGTCGGCTACGAAA---TTCTTTTTTATACCCTT--------------------------------------------------GCAAAAAGG--------GTATATTAATT---------TTGGTCAGA-AGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAAA-----GTATATATATTCTTGATCAGCATGACGAGACGAGTTCATATAGCCATGTCCGTTCGTC---------------------------------------CGTCCGTCTGTCC----GTCC------------GTCTGGA------------------T---CA---ACAAACG-----AT------CTTTCGAAA---------A----------------------------------------------------------------
dp5 Unknown_singleton_655:1284-1412 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGAAGTGTTTCCGACCCCATAAA-----GTATATATATTCTTGATCAACATCAATAGCCGAGTCGATAGAGCCGAGTCGATAGAGCCAAGTC---------------------------------TTTTTGTCTGTCC----GTCA------------ATATGGA------------------T---CC---T----------------------GTGGTG---------ATT-------------------------------------------------------------T
droPer2 scaffold_21:784714-784896 - AGA--------------------------------------------------------------------------------------------TGAAGAAAGGGCTGATTAATAAAAAACGA----------------AAAA--------GTATAA---AG---------TGGTGAAAA-TGGATGTAACGTCAAGAAGGAAGCGTTTCCGACCCCATAAA-----GTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATAGAGCCATTTCTCTCCGTC---------------------------------------CGTCTG----TCC----TTCC------------CTATGAG------------------CGCC-------------------------------TAG---------TTT-------------------------------------------------------------T
droAna3 scaffold_13022:10693-10840 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATCAAA-AGTGTGCAACGCAGTGAACGAGACATCTCCAACCC--TAAA-----GTATATATATTCTGGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC---------------------------------------CATCTGTCTGTCTGTCCGTCT--------GTCTGTTTCTA---------------------------------------------------CGCAA---------ACT-------------------------------------------------------------A
droBip1 scf7180000396640:766067-766280 + AGAA--------------------------------------------------------------------------------------------------GG-------------------------------ACAGAAATC--------AGAAATTAATT---------TTGGTCAGA-AATTTGGGACAAAATGAAGGAAACATCTCCGACCCTAT--T-----GTATATATATTCTTAATTAGGATCGCCTCCTGAGTTGATATGAGCATGTCCGTCCGTCC--------------------------------------TGTTTGTCTGTAT----GTTT------------CTAAGGC------------------T---AT---CGAA-------------------TTGGAACTTTGCACAC------------------------------ATCCATCTTTCCTTTGCACGCAGTATATAAGTTG
droKik1 scf7180000302683:285906-286064 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACATTTCCGACCCTATAAA-----GTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTAGAGCCATGTC--------------TGCCGGGTAGATCTAGACATGTTCGTCTGTCC----ATTT------------CTATGCA------------------A--------ACTAGTCTCTCAGTTTT------AAAGCT---------ATC-------------------------------------------------------------T
droFic1 scf7180000454072:1932855-1932966 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACACCTCAGACCCCATAAA-----GTATATATATTCTTGATCAGCATCACGATCTGAGTCGAAATACGTCTGTACGTCTGTC---------------------------------------CGTCTGTCCGTCTGTCCGTCT--------GTCTGTCTG------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491238:256289-256430 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACATTTCCGACCCTATGCA-----GTATATATATTCTTGATCAGCATCACTAGGAGAGTCGAACTAGCCATGTCCGTCTGTC---------------------------------------CTTCTGTCCGTCTGTCCGTCC------------GTTTCTA------------------CGCA--A--ACTAGTCTCTCTGTTTT------TAAGCT---------ATC-------------------------------------------------------------T
droRho1 scf7180000762118:335-587 - GAAAA-----------ATTTTTAAAGGC------------------------------TGCGAAAGTATCCCTTTTTATACCCGTTACTCGTAGAGTAA-AAGT-------AG-------AGTATA--------------TAGA--------GTAAAGAGTAT---------TCGTGCAAA-AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCTATAAA-----GTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTC---------------------------------------CGTTTCTCCGTCTGTCCGTCTGTCTGTCCGTCCGTATGAA------------------CGCT--GAG--------------------ATCTCGGAA---------ACT-------------------------------------------------------------A
droBia1 scf7180000302239:13145-13271 - AAAAATT----------------GAGAGACTATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTAGACGGA-------CGGACCCTATAAA-----GTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTCTC---------------------------------------CGTCTGTCTGCCC----GTCC------------GTATGAA------------------C---------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415046:2225-2419 + TT-ATTT----------------CATTCATTCATTCATA-----------------------------------TTTATACCCGTTACTCGTAGAGTAA-----------------------------------------AAGA--------GTATATTGTAT---------TCGTGCAAA-AGTATGTAACAGGGAGAAAGAAGGGTTTCCGACCCTATAAA-----GTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCTTCTGTC---------------------------------------CGTCCGTCTATTC----GTCT------------GTATGAA------------------C---------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409758:238057-238209 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGAAGCGTTTCGGACCTTATAAA-----GTATATGTATTCTTGATCAGGATCAAT-GCTGAGTCAATTTAGCCATGTCCGTCTGTCC--G--TATAAATGCTAAGATATCAGGTATA------------TATATATAT--------------------GTTCGCA------------------A--------AATGATT-----ATTTTTAA---ATGGGA---------TTT-------------------------------------------------------------T
dm3 chr3LHet:911224-911349 - AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTAGATCGAACTTAATAAA-----TTATATATGTTCTTGATCAGAATCACTGGCCGAGTCAATCTGTCCTTATCCTTCCGTC---------------------------------------CATCCGCTTATCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGCA---------ACT-------------------------------------------------------------T
droSim2 2l:20729752-20729887 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGACCCTATAAACATACATATATATATTCTTAAGCAAGATCAATAGTCGAGTCGATATGGCCATGACTGTCCGTG---------------------------------------AACGTA----------------------------------------------------------AGG--------------------ATCTCGATA---------ACCTATAAACGCTAAATAGTTTAGATAAGACATGCATACT------------------------C
droSec2 scaffold_48:149529-149668 - TT--------------------------------------------------------------------------TATACCCGTTAGTCGTAGAGTAA-----------------------------------------AAGG--------GTAC--TAGAT---------TC-TTAAAA-AGTATGTAACAGGCAGAAGGAGGCGTTTCCGAATATATAAA-----GTATTTATATTCTTGTTCAGGATCAATAGCTGAGTCGATCTGGCCATGCCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:21792401-21792633 - CTGATGTGAACCAATACTTT---------TTTATTGCTT-----------------------------------TTTATACCCGTTACTCGTAGAGTAA-----------------------------------------AAGG--------GTATACTAGAT---------TCGCTGAAA-AGTATGAAACAGGCAAAAGAAAGCGTTTCCGACCATATAAA-----GTATATATATTGTTAATCAGGAACAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTC---------------------------------------CGTCCGTCTGTCC----ATCC------------GTTTGATTAATGTTTTGGTCAATTTCGACC-----------------------------CGTT---------ATT-------------------------------------------------------------C
droEre2 scaffold_4845:22531325-22531468 - AA---------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TCGCTAAGA-AGTATGT-------AGAAGAACTCGTTTCCGACCCTATAAA-----GTATATATATTCTTAATCAGGATAAAAAGCCGATTCGATCTAGCCATGTCCGTCTGTC---------------------------------------ACTTTTTCTGTCC----GTTT------------ATGTATT------------------C--------C--GGAT-----------------TTTTT---------TTT-------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTTATTT----------------AAGGCACTTATTCCTC-----------------------------------TTCATAGCCATTTAA--CAGACGAAGAAGG-------TA-------AG-----------------AAAACATAAAAAAA------CGTTTCATGAATAATGGGCAAATTGGCTTGG------ACGAAGAGGGAAGTCCGAATCTATGAA-----GTATATTTGTTCTTAAGCAAGATGTCGAATTGAGTCGATAAAGCCATGTCAGTAA-TCTGGG--ACTCGGAGCTAAGCTCTC---------------CGCCTATCTTTCC----ATTT------------GTATGAA------------------CA----------AGTC-----AT------TTTTCGGCA---------ATT-------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................GACGAAGAAGG-------TA-------AG-----------------AAAAC...............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...................................CCTC-----------------------------------TTCATAGCCATTTAA--CAGACGAA............................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................TTCATAGCCATTTAA--CAGACGAAGAAGT-------................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CATGTCAGTAA-TCTGGG--ACT........................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....TT----------------AAGGCACTTATTCCTC-----------------------------------TTC..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................ATAGCCATTTAA--CAGACGAAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
............................................................................CATAGCCATTTAA--CAGACGAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................TAGCCATTTAA--CAGACGAAGAAGT-------................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
droMoj3
ACTGTTT----------------AAGGCACTTATTCCTC-----------------------------------TTCATAGCCATTTAA--CTGAGGAAGAAGG-------TA-------AGTTTTTATACCCTAA-ACCAAAA--------TTATAATGGTT---------TTGTTGGAA-TGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCTCTCAAA-----GTATATATATTCTTGATTAGGGTGACGAGCTGAATTGATTTAGCCCTGTCTGTCTGTC---------------------------------------TGTCCGTCCGTCC----GTCT----TTCAGTATGTTTGAA------------------CG-------------------------------CGTCT---------ATT-------------------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................TGTTGGAA-TGTATGTAACAGG............................................................................................................................................................................................................................................................................................................2130.331100000
.......................................................................................................................................................................................................................................TATATATTCTTGATTAGGGTGA..................................................................................................................................................................................................................................................2250.201010000
.................................................................................................................................................................................................GGCAGAAGGAGGCGTGGCAGACCT......................................................................................................................................................................................................................................................................................24200.051100000
....................................................................................................................................................................................A-TGTATGTAACAGGCAGAAGGAG...................................................................................................................................................................................................................................................................................................23200.051000010
.........................................................................................................................................................................................ATGTAACAGGCAGAAGGAGGCGTGG.............................................................................................................................................................................................................................................................................................25200.051000010
........................................................................................................................................................................................................................................................................................TCTGTC---------------------------------------TGTCCGTCCGTCC----GTCT----.................................................................................................................................................23200.051100000
......................................................................................................................................................................................................................................................................................TGTCTGTC---------------------------------------TGTCCGTCCGTCC----G........................................................................................................................................................22200.051100000
droGri2
AAAA--------------------------------------------------------------------------------------------------CG-------------------------------GTAAAAAGG--------GTATTATGGTT---------TTGTGCAAA-TGTATGTAACAGGCAGAAGGAAGTATCTCCGACCTCTCGAA-----GTACATATATTCTTGATCAGGATCTACAACCGAGTCGATATAGCCATGTTCGTCCGTC---------------------------------------CGTCGGTCCGTCC----ATCC------------ATAAAGA------------------C---TT-----------------------------CAA---------ATT-------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TT-TTGT----------------AAGTCCTTTATTCTTCTTCTTAATAGCGAGTCGGCTACGAAA---TTCTTTTTTATACCCTT--------------------------------------------------GCAAAAAGG--------GTATATTAATT---------TTGGTCAGA-AGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAAA-----GTATATATATTCTTGATCAGCATGACGAGACGAGTTCATATAGCCATGTCCGTTCGTC---------------------------------------CGTCCGTCTGTCC----GTCC------------GTCTGGA------------------T---CA---ACAAACG-----AT------CTTTCGAAA---------A----------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................TATTAATT---------TTGGTCAGA-AGTGTGC..................................................................................................................................................................................................................................................................................................................24204.6593000930
....................................................................................................................................................................................................................................................TCAGCATGACGAGACGAGTTCATA...................................................................................................................................................................................................................................24202.2545000450
................................................................................................................................................................................................................................................TTGATCAGCATGACGAGACGAGTT.......................................................................................................................................................................................................................................24200.40808000
..................................................................................................................................................................................................................................................GATCAGCATGACGAGACGAGTTCATA...................................................................................................................................................................................................................................26200.25500050
..............................................................................................................................................................................................................................................TCTTGATCAGCATGACGAGACGAG.........................................................................................................................................................................................................................................24200.25504010
............................................................................................................................................................................................CAACGCATAGAAGGAAGCATC..............................................................................................................................................................................................................................................................................................21200.20404000
....................................................................................................................................................................................................................................................TCAGCATGACGAGACGAGTTCAT....................................................................................................................................................................................................................................23200.10200020
.......................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCC----GTCC------------GTCTGG...................................................................................................................................21200.10220000
...................................................................................................................................................................................................TAGAAGGAAGCATCTCCGACC.......................................................................................................................................................................................................................................................................................21200.10202000
...............................................................................................................................................................................................CGCATAGAAGGAAGCATCTCCGA.........................................................................................................................................................................................................................................................................................23200.10202000
.......................................................................................................................................................................................................................................................................TCATATAGCCATGTCCGTTCGTC---------------------------------------CG........................................................................................................................................................................25170.06100010
.......................................................................................................................................................................................................................................................................TCATATAGCCATGTCCGTTCGTC---------------------------------------C.........................................................................................................................................................................24170.06101000
..................................................................................................................................................................................................................................................................CGAGTTCATATAGCCATGTCCGTTC....................................................................................................................................................................................................................25190.05101000
........................................................................................................................................................GTATATTAATT---------TTGGTCAGA-AGT......................................................................................................................................................................................................................................................................................................................23200.05101000
.........................................................................................................................................................................................................................................................................ATATAGCCATGTCCGTTCGTC---------------------------------------C.........................................................................................................................................................................22200.05101000
........................................................................................................................................................................................................................................................CATGACGAGACGAGTTCATATAG................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................TC---------------------------------------CGTCCGTCTGTCC----GTCC------------GTC......................................................................................................................................22200.05101000
.............................................................................................................................................................................................................................................................................................C---------------------------------------CGTCCGTCTGTCC----GTCC------------GTCTG....................................................................................................................................23200.05101000
................................................................................................................................................................ATT---------TTGGTCAGA-AGTGTGC..................................................................................................................................................................................................................................................................................................................19200.05100100
.................................................................................................................................................................................................................................................TGATCAGCATGACGAGACGAG.........................................................................................................................................................................................................................................21200.05100010
.................................................................................................................................................................................................................................................TGATCAGCATGACGAGACGAGTTCAT....................................................................................................................................................................................................................................26200.05101000
...........................................................................................................................................................................................................................................................GACGAGACGAGTTCATATAGCCATGT..........................................................................................................................................................................................................................26200.05101000
..........................................................................................................................................................................................................................................................TGACGAGACGAGTTCATATA.................................................................................................................................................................................................................................20200.05100010
...........................................................................................................................................................TATTAATT---------TTGGTCAGA-AGTG.....................................................................................................................................................................................................................................................................................................................21200.05110000
.....................................................................................................................................................................................................................................................CAGCATGACGAGACGAGTTCA.....................................................................................................................................................................................................................................21200.05101000
dp5
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGAAGTGTTTCCGACCCCATAAA-----GTATATATATTCTTGATCAACATCAATAGCCGAGTCGATAGAGCCGAGTCGATAGAGCCAAGTC---------------------------------TTTTTGTCTGTCC----GTCA------------ATATGGA------------------T---CC---T----------------------GTGGTG---------ATT-------------------------------------------------------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................TTGATCAACATCAATAGCCGAGTCGA.....................................................................................................................................................................................................................................26130.2330000000030
................................................................................................................................................................................................................................................TTGATCAACATCAATAGCCGAGTC.......................................................................................................................................................................................................................................24150.1320200000000
................................................................................................................................................................................................................................................TTGATCAACATCAATAGCCGAGTCG......................................................................................................................................................................................................................................25130.0810100000000
................................................................................................................................................................................................................................................TTGATCAACATCAATAGCCGT..........................................................................................................................................................................................................................................21200.0510000010000
droPer2
AGA--------------------------------------------------------------------------------------------TGAAGAAAGGGCTGATTAATAAAAAACGA----------------AAAA--------GTATAA---AG---------TGGTGAAAA-TGGATGTAACGTCAAGAAGGAAGCGTTTCCGACCCCATAAA-----GTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATAGAGCCATTTCTCTCCGTC---------------------------------------CGTCTG----TCC----TTCC------------CTATGAG------------------CGCC-------------------------------TAG---------TTT-------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATA...................................................................................................................................................................................................................................23200.051010000
droAna3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATCAAA-AGTGTGCAACGCAGTGAACGAGACATCTCCAACCC--TAAA-----GTATATATATTCTGGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC---------------------------------------CATCTGTCTGTCTGTCCGTCT--------GTCTGTTTCTA---------------------------------------------------CGCAA---------ACT-------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................TGTCCGTCT--------GTCTGTTTCTA---------------------------------------------------CGCA...........................................................................24200.153300000
...................................................................................................................................................................................AA-AGTGTGCAACGCAGTGAACGAG...................................................................................................................................................................................................................................................................................................24140.071001000
.......................................................................................................................................................................................GTGTGCAACGCAGTGAACGAG...................................................................................................................................................................................................................................................................................................21140.071001000
..........................................................................................................................................................................................TGCAACGCAGTGAACGAGACATCTC............................................................................................................................................................................................................................................................................................25140.071000100
......................................................................................................................................................................................AGTGTGCAACGCAGTGAACGA....................................................................................................................................................................................................................................................................................................21140.071100000
...........................................................................................................................................................................................GCAACGCAGTGAACGAGAC.................................................................................................................................................................................................................................................................................................19150.071001000
..........................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTC---------------------------------------CATC......................................................................................................................................................................24150.071010000
.........................................................................................................................................................................................GTGCAACGCAGTGAACGAGACAT...............................................................................................................................................................................................................................................................................................23150.071000010
.........................................................................................................................................................................................GTGCAACGCAGTGAACGAGAC.................................................................................................................................................................................................................................................................................................21150.071010000
............................................................................................................................................................................................................................................ATTCTGGATCAGGATCACCTCC.............................................................................................................................................................................................................................................22160.061010000
.............................................................................................................................................................................................................................................................................GAGCATGTCCGTCTGTC---------------------------------------CATC......................................................................................................................................................................21160.061000010
................................................................................................................................................................................................................................................TGGATCAGGATCACCTCC.............................................................................................................................................................................................................................................18180.061010000
droBip1
AGAA--------------------------------------------------------------------------------------------------GG-------------------------------ACAGAAATC--------AGAAATTAATT---------TTGGTCAGA-AATTTGGGACAAAATGAAGGAAACATCTCCGACCCTAT--T-----GTATATATATTCTTAATTAGGATCGCCTCCTGAGTTGATATGAGCATGTCCGTCCGTCC--------------------------------------TGTTTGTCTGTAT----GTTT------------CTAAGGC------------------T---AT---CGAA-------------------TTGGAACTTTGCACAC------------------------------ATCCATCTTTCCTTTGCACGCAGTATATAAGTTGSizeHit CountTotal NormTotal
No Reads
droKik1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACATTTCCGACCCTATAAA-----GTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTAGAGCCATGTC--------------TGCCGGGTAGATCTAGACATGTTCGTCTGTCC----ATTT------------CTATGCA------------------A--------ACTAGTCTCTCAGTTTT------AAAGCT---------ATC-------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACACCTCAGACCCCATAAA-----GTATATATATTCTTGATCAGCATCACGATCTGAGTCGAAATACGTCTGTACGTCTGTC---------------------------------------CGTCTGTCCGTCTGTCCGTCT--------GTCTGTCTG------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGACATTTCCGACCCTATGCA-----GTATATATATTCTTGATCAGCATCACTAGGAGAGTCGAACTAGCCATGTCCGTCTGTC---------------------------------------CTTCTGTCCGTCTGTCCGTCC------------GTTTCTA------------------CGCA--A--ACTAGTCTCTCTGTTTT------TAAGCT---------ATC-------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
GAAAA-----------ATTTTTAAAGGC------------------------------TGCGAAAGTATCCCTTTTTATACCCGTTACTCGTAGAGTAA-AAGT-------AG-------AGTATA--------------TAGA--------GTAAAGAGTAT---------TCGTGCAAA-AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCTATAAA-----GTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTC---------------------------------------CGTTTCTCCGTCTGTCCGTCTGTCTGTCCGTCCGTATGAA------------------CGCT--GAG--------------------ATCTCGGAA---------ACT-------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
AAAAATT----------------GAGAGACTATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTAGACGGA-------CGGACCCTATAAA-----GTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTCTC---------------------------------------CGTCTGTCTGCCC----GTCC------------GTATGAA------------------C---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TT-ATTT----------------CATTCATTCATTCATA-----------------------------------TTTATACCCGTTACTCGTAGAGTAA-----------------------------------------AAGA--------GTATATTGTAT---------TCGTGCAAA-AGTATGTAACAGGGAGAAAGAAGGGTTTCCGACCCTATAAA-----GTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCTTCTGTC---------------------------------------CGTCCGTCTATTC----GTCT------------GTATGAA------------------C---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGAAGCGTTTCGGACCTTATAAA-----GTATATGTATTCTTGATCAGGATCAAT-GCTGAGTCAATTTAGCCATGTCCGTCTGTCC--G--TATAAATGCTAAGATATCAGGTATA------------TATATATAT--------------------GTTCGCA------------------A--------AATGATT-----ATTTTTAA---ATGGGA---------TTT-------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTAGATCGAACTTAATAAA-----TTATATATGTTCTTGATCAGAATCACTGGCCGAGTCAATCTGTCCTTATCCTTCCGTC---------------------------------------CATCCGCTTATCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGCA---------ACT-------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................CCTTATCCTTCCGTC---------------------------------------CATCCGCTTA................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTGATCAGAATCACTGGCCGAGT........................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CC------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGC...........................................................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TGTCCTTATCCTTCCGTC---------------------------------------CATCCGCT..................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................GGTAGATCGAACTTAATAAA-----T..........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTATGAA------------------CGTC--GAG--------------------ATCTCAGC...........................................................................2221.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------A..................................................................................2431.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AA------------------CGTC--GAG--------------------ATCTCAGCA---------ACT-------------------------------------------------------------.2141.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGATCAGAATCACTGGCCGAGTCAATC...................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTGTCCTTATCCTTCCGTC---------------------------------------CATCC.....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TCCGTC---------------------------------------CATCCGCTTATCC----GTA......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCAATCTGTCCTTATCCTTC.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTGATCAGAATCACTGGCCGAGTCAA.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCAATCTGTCCTTATCCTTCC....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CAGGTAGATCGAACTTAATAAA-----TTATA......................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTGTCCTTATCCTTCCGTC---------------------------------------CATCCGCT..................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTAGATCGAACTTAATAAA-----T..........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................C------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGCA---------ACT-------------------------------------------------------------.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AATCTGTCCTTATCCTTCCGT..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCCTTCCGTC---------------------------------------CATCCGCTTATCC----GTC......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTATCC----GTCC------------GTATGAA------------------CGTC--..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TAATAAA-----TTATATATGTTCTTGATCA........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TATGTTCTTGATCAGAATCACTGGC.............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGC...........................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TATGAA------------------CGTC--GAG--------------------ATCTCAGCA---------AC...............................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TCC------------GTATGAA------------------CGTC--GAG--------------------ATCTCAGC...........................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGAA------------------CGTC--GAG--------------------ATCTCAGCA---------AC...............................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TATCC----GTCC------------GTATGAA------------------CGTC--G.........................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGAA------------------CGTC--GAG--------------------ATCTCAGC...........................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTCC------------GTATGAA------------------CGTC--GAG--------------------ATC................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------...................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCTCA.............................................................................27190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATC................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................C----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATC................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................C----GTCC------------GTATGAA------------------CGTC--GAG--------------------AT.................................................................................21200.0510000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................C----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCTC..............................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------A..................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCC----GTCC------------GTATGAA------------------CGTC--GAG--------------------ATCT...............................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGACCCTATAAACATACATATATATATTCTTAAGCAAGATCAATAGTCGAGTCGATATGGCCATGACTGTCCGTG---------------------------------------AACGTA----------------------------------------------------------AGG--------------------ATCTCGATA---------ACCTATAAACGCTAAATAGTTTAGATAAGACATGCATACT------------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................TG---------------------------------------AACGTA----------------------------------------------------------AGG--------------------ATCTCGATA---------ACA..............................................................2311.00100000000000010000
............................................................................................................................................................................................................................................................................TGGCCATGACTGTCCGTG---------------------------------------AACGTA----------------------------------------------------------AGG--------------------...................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................AAGATCAATAGTCGAGTC.......................................................................................................................................................................................................................................1820.50101000000000000000
........................................................................................................................................................................................................................................................GATCAATAGTCGAGTCGATAT..................................................................................................................................................................................................................................2130.33101000000000000000
..........................................................................................................................................................................................................................................................TCAATAGTCGAGTCGAT....................................................................................................................................................................................................................................17140.07100000000001000000
droSec2
TT--------------------------------------------------------------------------TATACCCGTTAGTCGTAGAGTAA-----------------------------------------AAGG--------GTAC--TAGAT---------TC-TTAAAA-AGTATGTAACAGGCAGAAGGAGGCGTTTCCGAATATATAAA-----GTATTTATATTCTTGTTCAGGATCAATAGCTGAGTCGATCTGGCCATGCCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................GAGTCGATCTGGCCATGC..........................................................................................................................................................................................................................18200.0511000
........................................................................................................................................................................................................................................................GATCAATAGCTGAGTCGAT....................................................................................................................................................................................................................................19200.0510010
droYak3
CTGATGTGAACCAATACTTT---------TTTATTGCTT-----------------------------------TTTATACCCGTTACTCGTAGAGTAA-----------------------------------------AAGG--------GTATACTAGAT---------TCGCTGAAA-AGTATGAAACAGGCAAAAGAAAGCGTTTCCGACCATATAAA-----GTATATATATTGTTAATCAGGAACAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTC---------------------------------------CGTCCGTCTGTCC----ATCC------------GTTTGATTAATGTTTTGGTCAATTTCGACC-----------------------------CGTT---------ATT-------------------------------------------------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................ATACTAGAT---------TCGCTGAAA-AGTATGA..................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................T-----------------------------------TTTATACCCGTTACTCGTAGAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................25200.5511000000000011
...............................................................................................................................................................................................................................................................................CCATGTCCGTCTGTC---------------------------------------CGTCCG....................................................................................................................................................................21200.15330000000000
.................................................................................................AA-----------------------------------------AAGG--------GTATACTAGAT---------TCGCTGAAA-AGT......................................................................................................................................................................................................................................................................................................................2990.11100000010000
..............................................................................................................................................GG--------GTATACTAGAT---------TCGCTGAAA-A........................................................................................................................................................................................................................................................................................................................23110.09101000000000
.................................................................................................AA-----------------------------------------AAGG--------GTATACTAGAT---------TCGCT..............................................................................................................................................................................................................................................................................................................................22120.08100100000000
...........................................................................................TAGAGTAA-----------------------------------------AAGG--------GTATACTAGAT---------TCGC...............................................................................................................................................................................................................................................................................................................................27160.06100001000000
.......................................................................................................................................................................................................................................................GGAACAATAGCCGAGTCGATCTGGCC..............................................................................................................................................................................................................................26190.05100100000000
................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGT......................................................................................................................................................................................................................25200.05100100000000
...................................................................................................................................................................................................................................................ATCAGGAACAATAGCCGAGTC.......................................................................................................................................................................................................................................21200.05100000100000
.......................................................................................................................................................................................................AGAAAGCGTTTCCGACCATATAAA-----GT.........................................................................................................................................................................................................................................................................26200.05100000010000
........................................................................................................................................................................................................................................................................................TCTGTC---------------------------------------CGTCCGTCTGTCC----A........................................................................................................................................................20200.05100100000000
.................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTCCGTCTGTC---------------------------------------..........................................................................................................................................................................29200.05100100000000
droEre2
AA---------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TCGCTAAGA-AGTATGT-------AGAAGAACTCGTTTCCGACCCTATAAA-----GTATATATATTCTTAATCAGGATAAAAAGCCGATTCGATCTAGCCATGTCCGTCTGTC---------------------------------------ACTTTTTCTGTCC----GTTT------------ATGTATT------------------C--------C--GGAT-----------------TTTTT---------TTT-------------------------------------------------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 11:54 PM