ID:

dvi_14843

 Coordinate:

scaffold_13047:134408-134518 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.4 -0.2 -0.1

Flybase annnotation

CDS [Dvir\GJ23598-cds]; CDS [Dvir\GJ23598-cds]; exon [dvir_GLEANR_8939:2]; exon [dvir_GLEANR_8939:1]; intron [Dvir\GJ23598-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------##################################################
GCTATTATTTATGGATGATGACGCGGTAGCTGCTCCTATTTCACTCGAATGTAATGAAGCCGGCAAGAAGAAAACTGATCATATCGCAAAGCAGAACATCAATAAAAATGAAAAGGAAAATAAATTAAACATATTAAATAAAAATAACTCTCACTCAAAAGTTGCAAATGTCAACACGGTGTCAAAGCCCAATGGCGTGCGAAGTACTTCA
*******************************************************************........((((....((........))..)))).......................................................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 M047
female body
 M061
embryo
 SRR060685
9xArg_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 V053
head
 SRR060654
160x9_ovaries_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 M028
head
 M027
male body		 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106730
embryo_16-30h
.........TATGGATGATGACGCGGTAGCTGC.................................................................................................................................................................................. 24 0 1 3.00 3 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AAGAAAACTGATCATATCGCAAAGCA...................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAAAGCCCAATGGCGTGCGAAGTATT... 27 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TATGGATGATGACGCGGTAG...................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AAAACTGATCATATCGCAAAGCA...................................................................................................................... 23 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................TTCACTCGAATGTAATGAAGCCGGC................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGAATGTAATGAAGGCGGCAG................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACGCGGTGTCAAAGCCCAATGGCGT............. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGCAAATGTCAACACGGTGTC............................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTCAAAGCCCAATGGCGTGCGAAG....... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGCTCCTATTTCACTCGAATGCAATGA.......................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTCAACGCGGTGTCAAAGCCCAATG................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................AACTGATCATATCGCAAAGCA...................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GATGACGCGGTAGCTGCTCCT.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ATTATTTATGGATGATGACGC........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AACTGATCATATCGCAAAGCAGAACA................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AATAACTCTCACTCAAAAGTTGCAAAT.......................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GATGACGCGGTAGCTGCTCCG.............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCACTCGAATGTAATGAAGCCGGC................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCGAATGTAAAGAAGCCTGCAG................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TTATGGATGATGACGCGGTAGCTG................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAGCTGCTCCTATTTCACTCGAATGTAAT............................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCGAATGTAATGAAGCCGGCAAGAAGAA........................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CTATTTCACTCGAATGTAATGAAGC....................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TAAATAAAAATAACTCTCACTC....................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TATTTATGGATGATGACGCGGTAGC..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAATAAAAATAACTCTCACTCAAAA................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCGCAAAGCAGAACATCAATAA.......................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........TGGATGATGACGCGGTAGCTGCTCC............................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGCAAATGTCAACGCGGTGTCAAAGCC...................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......ATTTATGGATGATGACGCGGT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AATGTCAACGCGGTGTCAAAGC....................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AACTCTCACTCAAAAGTTGCA............................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATTAAATAAACATAACTCTCACTCAA..................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GCGGTGTCAAAGCCCAATGGC............... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTCGAATGTAATGAAGCCGGC................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGAACATCAATAAGTATGAA................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AATAAAAATGAAAAGGAAA............................................................................................ 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAATAAAAGTAGCTCTCACTC....................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GCTATCACTTCTGGATGAT................................................................................................................................................................................................ 19 3 19 0.32 6 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
............................................................................................AGAAGATCAATAAAAATG..................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................ACCGGCAAGAAGACAACT....................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAAGCCGGCAAGAGGT............................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGATAATAAATACCTACTACTGCGCCATCGACGAGGATAAAGTGAGCTTACATTACTTCGGCCGTTCTTCTTTTGACTAGTATAGCGTTTCGTCTTGTAGTTATTTTTACTTTTCCTTTTATTTAATTTGTATAATTTATTTTTATTGAGAGTGAGTTTTCAACGTTTACAGTTGTGCCACAGTTTCGGGTTACCGCACGCTTCATGAAGT
*******************************************************........((((....((........))..)))).......................................................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
......................................................................................................................................................................TTGCAGTTGCGCCACAGTTTCGGGT.................... 25 2 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:134358-134568 - dvi_14843 GCTATTATTTATGGATGATGACGCGGTA---------GCTGCTCCTAT---TTCACTCGAA--------------TGTAATGAA---------GCCGGC--A----AGAAGAAAACTGATC------ATATC------GCAA------AGCAGAACATCAATAAAAATGAAAAGGAAAATAAATTAAACATATTAAATAAAAATAA---C---------------TCTCACTCAAAAGTTGCAAATGTCA------ACACGGTGTCAAAG----------CCC-------------------------AATG------GCGTGCGAAGT------------ACTTCA
droMoj3 scaffold_6540:1455291-1455489 + GTTATTATCTATGGATGATGAATCGGTG---------GCACCTGCTAT---TCCACTTAAACAA------AGCGCCG--------GT------ACCGGC--A----AAAAAAAAAAAGACC------AATTT------GTAC------AGTCGAACACTGTTAAAAATGAAAAGGAAAATAAGATAAATACGCTAAATAAAAATAA---T---------------------A------CGAAAATTACAAATCAAAACTGCGGCTCAAAA----------GGA----------------------------------AA------TAG------------TGTTTCG
droGri2 scaffold_14906:13518920-13519109 - ACTATTATTTATGGACGATGACGCAGGT---------GGTGGTGCCCCAATTCTTCC--------------------------------------CGAC--A----AAAAGAAAACGGATC--------------------A------GAGCGTA----AAAAAGAGCGAAAAGGAAAACAAGTCGAACCCAGTTAGCAATAATAAGAATAAG------AACAATGC---TCAG---ACCAAAACAGCAAATGCGAATTCCGCCCATAAA----------CGA----------------------------------AA------TGG------------CGCTTCG
droWil2 scf2_1100000004943:5692786-5693035 - GTTATTGTTTATGGACGATGACGCTGGA---------GCTCCAGTCGT---GCCAGTGGCCATA------AATGCCG--------GTGCCGGCGCTGGCAACGAGAAAAAGAAAACTGAAC------GCCCG------GCCACTGTACAACAGAAGAAGAGCAAGCCTGAAAAGGAGAATAAGCCAATTGTGCCAAATAATAAGAC---GAATGCACCAGTTAAAGC---T------------GGCACCA-------A------------TGTGCCAAAGG----------CAAAGTTGCCGGCGCCTGTTGGTGGACAAGTGATACGCAACAA------------A
dp5 2:18023433-18023628 - ACTATTGTCAACATATGACGAGGATGTC---------GCAAAAGCTAT---CTCTACAAAAATG------AATATCG--------GC------CTTAGCAAT------AAGAA------AC------AGATT------AAAA------AAACAGTCTTAAATAAACCGGAAAAGGAAAATAAGCCAATGACTGGAAACAATAACAA---TATTGG---------------TAAAACAGAAAAAATTTTAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TGT------------TACCAAA
droPer2 scaffold_3:291660-291855 - ACTATTGTCAACATATGACGAGGATGTC---------GCAACAGCTAT---CTCTATAAAAATG------AATGTCG--------GC------CTTAGCAAT------AAGAA------AC------AGATT------AAAA------AAACAGTCTTAAATAAACCGGAAAAGGAAAATAAGCCAATGACAGGAAACAATAACAA---TATTGG---------------TAAAACAGAAAAAATTGTAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TGT------------TACCAAA
droBip1 scf7180000396708:2036632-2036827 - ACTGTTGTTCATGGACGACGAGGATGCA---------GTTGCGT---C---GCAGGTGAAGGTG------GCCGCCATTGCGGT---------GCCGGC--T------AAGAAGCAGGAGG---------CT------CCCA------AGGCGCCTAAGAGCAAGCAGGAGAAGGAGAACAAGCCGGTGGCTCC---CAAAAAGGCGCCCAAC------------------GCGGTTGTCCAGGGCAAGA-------G------------CCCGGTGAAGG---G---CAACAAGC----------------------------------------------CTGTG
droFic1 scf7180000454055:850185-850422 + GCTGTTGTTCATGGACGACGATGACTCC---------TCAGCGCCAGT---AAAGACACAGATT------CCCGCCGTAGTCGC---------GCCGGC--C------AAGAAGGCGGAGG---------CG---GCTCCAA------AGGCCCCGAAGAGCAAGCCGGAGAAGGAGAACAAGCCGGTAGCGTCGGCCCGCAAGGC---GAACAA---------------TCCGGCGGCAAAGAATGCAA-------G------------CCCCGTGAAGG---G---CGGAAAAGT----GC---CGGCTGGCGGGGAATCTGGTCGCACTAGGAAT------CCG
droEle1 scf7180000491212:274228-274483 + GCTGTTGTTCATGGACGACGATGACTCCGCCGCCAACTCCGCTCCTGC---CCAGCCACAGACTGCCATTCCCGCCGTAGTTGC---------GCCGTC--C------AAGAAGGCGGAGC------AGCCG------GCCA------AGGCGGCAAAAAGCAAGCCGGAGAAGGAGAACAAGCCGGTGGCGTCGGCCCGCAAGGC---CAACAA---------CTCGAATCCGGTGGCCAAAAACACGA-------G------------TCCGGTGAAGGGAGTCGGCGGCAAAGG-AGCGC---CAACTGGCGGAGA------TCGCCCTAGG------------
droBia1 scf7180000302136:1749394-1749631 + GCTGTTGTTCATGGACGACGATGACTCC---------TCCGCGCCTGC---CCAGCCACAGATT------CCCGCCGTAGTGGC---------GCCGGC--C------AAGAAACCGGAGT---------CGCAAGCCCCCA------AGGCGCCCAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTGGTGTCGGTGCGTAAGGC---CAAC------------------CCGGCGGCGAAGAACGCCA-------G------------TCCCGTGAAGG---GTGGTGGCAAACC-GGTGC---CGTCTGGCGGGGATTCGGGTCGCACCCGG------------
droTak1 scf7180000415658:271629-271896 + ACTGCTGTTCATGGACGACGATGACTCC---------TCCGCGCCTGC---CCAGCCACAGATTCCCACCGCTGCCGTAGTGGCGGC------GCCGGC--C------AAGAAACCGGAAC---------AG------CCGA------AGGTGGCCAAGAGCAAGCAGGAGAAGGAGAACAAGCCGGTGGCGTCGGCCCGCAAGGT---TAATAG---------CTCGAATCCGGCGGCCAAAAACGCGA-------G------------TCCGGTGAAGCCAGGCGGCGGCAAGTT-GGCGCCCTCTGCAGGCGGAGATTCGGGTCGCCCCAGGAACGCAGCCACA
droEug1 scf7180000409692:447459-447676 - GCTGTTGTTCATGGACGACGATGATTCT---------TCCGCGCCTGC---CCAACCACAGATT------CCCGCCGTAATCGC---------GCCGAC--C------AAGAAACCGGAAC---------CG------GCAA------AAGCCCCGAAGAGCAAGCAGGAAAAGGAAAATAAGCCGGTTGTGACGGCCCGTAAGGC---CAACAA---------------TCCTGCGGCGAAGAACTCAA-------G------------TCCTGTGAAAG---G---AGGCAAAGT----AA---CGGCTGGCGGAGATGTGA-----------------------
droSim2 3r:20459948-20460197 + GCTGTTGTTCATGGACGACGATGACTCC---------TCCGGGCTCGC---ACAGCCACAGATT------GCCGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAACAGGCAAAGGCG------GCAA------AGGCGCCAAAGAGTAAGTCCGAGAAGGAGAACAAGCCGGTTGTGGCGGCCCGCAAGGC---CAACGC---------------TCCGGTGGCGAAGAACGCGA-------G------------TCCGGTGAAAG---G---CGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGTCGCCCCAGGAACCCAACCGCA
droSec2 scaffold_33:211048-211297 + GCTGTTGTTCATGGACGACGATGACTCC---------TCCGGGCTCGC---ACAGCCACAGATT------GCCGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAACCGGCAAAGGCG------GCAA------AGGCGCCAAAGAGCAAGTCCGAGAAGGAGAACAAGCCGGTTGTGGCGGCTCGCAAGGC---CAACGC---------------TCCGGTGGCGAAGAACACGA-------G------------TCCGGTGAAAG---G---CGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGTCGCCCCAGGAACCCAACCGCA
droYak3 3R:25546135-25546378 - GCTGTTGTTCATGGACGACGATGACTCCTCCG------CCGCGCCCGC---CCAGCCACAGATT------CCCGCCGTAGTCGC---------GGCGCC--T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCCGAAGGGCAAGTCCGAGAAGGAGAACAAGCCGGTAGCGTCGGCTCGCAAAGC---CAACGT---------------TCCGGCGGCCAAGAACGCGA-------G------------TCCAGTGAAGG---G---TGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGCCGTCCCAGGAATGCAGCTACA
droEre2 scaffold_4820:7099806-7100037 - GCTGTTGTTCATGGACGACGATGACTCCTCCG------CCGCTCCCGC---CCAGCCACAGATT------CCTGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCCAAAGGGCAAGTCAGAGAAGGAGAACAAGCCGGTAACTTCGGCCCGCAAGGC---CAACGC---------------TCCGGCGGTCAAGAACGTGA-------G------------TCCAGTGAAGG---G---TGGCAAGGG----TC---CCGCTGGCGGTGATGTGAGCCGTCCCAGG------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCTATTATTTATGGATGATGACGCGGTA---------GCTGCTCCTAT---TTCACTCGAA--------------TGTAATGAA---------GCCGGC--A----AGAAGAAAACTGATC------ATATC------GCAA------AGCAGAACATCAATAAAAATGAAAAGGAAAATAAATTAAACATATTAAATAAAAATAA---C---------------TCTCACTCAAAAGTTGCAAATGTCA------ACACGGTGTCAAAG----------CCC-------------------------AATG------GCGTGCGAAGT------------ACTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........TATGGATGATGACGCGGTA---------GCTGC.................................................................................................................................................................................................................................................................................................................2413.003000000010000000000000000000010000010000000000000000000000000000
............................................................................................................AAGAAAACTGATC------ATATC------GCAA------AGCA...................................................................................................................................................................................................2612.002000000000000000000000100000000000010000000000000000000000000000
.........TATGGATGATGACGCGGTA---------G.....................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................AAAACTGATC------ATATC------GCAA------AGCA...................................................................................................................................................................................................2312.002000000000000000000000000000100000000000000000000000000000001000
...................................................TTCACTCGAA--------------TGTAATGAA---------GCCGGC--......................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TGCAAATGTCA------ACACGGTGTC.................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGTCAAAG----------CCC-------------------------AATG------GCGTGCGAAG...................2511.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................AACTGATC------ATATC------GCAA------AGCA...................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
................GATGACGCGGTA---------GCTGCTCCT.............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
...ATTATTTATGGATGATGACGC...................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................AACTGATC------ATATC------GCAA------AGCAGAACA..............................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................AATAA---C---------------TCTCACTCAAAAGTTGCAAAT.....................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................GATGACGCGGTA---------GCTGCTCCG.............................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
....................................................TCACTCGAA--------------TGTAATGAA---------GCCGGC--......................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........TTATGGATGATGACGCGGTA---------GCTG..................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
..........................TA---------GCTGCTCCTAT---TTCACTCGAA--------------TGTAAT..........................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
........................................................TCGAA--------------TGTAATGAA---------GCCGGC--A----AGAAGAA..........................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............................................CTAT---TTCACTCGAA--------------TGTAATGAA---------GC............................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TAAATAAAAATAA---C---------------TCTCACTC..................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....TATTTATGGATGATGACGCGGTA---------GC....................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................AAATAAAAATAA---C---------------TCTCACTCAAAA..............................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TC------GCAA------AGCAGAACATCAATAA.......................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
...........TGGATGATGACGCGGTA---------GCTGCTCC..............................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
......ATTTATGGATGATGACGCGGT................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AA---C---------------TCTCACTCAAAAGTTGCA........................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
.......................................................CTCGAA--------------TGTAATGAA---------GCCGGC--......................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AATAAAAATGAAAAGGAAA.........................................................................................................................................................................1920.501000000000000000000000000000000000010000000000000000000000000000
droMoj3
GTTATTATCTATGGATGATGAATCGGTG---------GCACCTGCTAT---TCCACTTAAACAA------AGCGCCG--------GT------ACCGGC--A----AAAAAAAAAAAGACC------AATTT------GTAC------AGTCGAACACTGTTAAAAATGAAAAGGAAAATAAGATAAATACGCTAAATAAAAATAA---T---------------------A------CGAAAATTACAAATCAAAACTGCGGCTCAAAA----------GGA----------------------------------AA------TAG------------TGTTTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................TTAAACAA------AGCGCCG--------GT------ACCG..........................................................................................................................................................................................................................................................2111.001000001
.....TATCTATGGATGATGAAT....................................................................................................................................................................................................................................................................................................................................1811.001100000
........CTATGGATGATGAATCGGTG---------......................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................AAATCAAAACTGCGGCTCA................................................................................1911.001000010
.............................................TAT---TCCACTTAAACAA------AGCGCCG--------GT------A.............................................................................................................................................................................................................................................................2611.001000001
droGri2
ACTATTATTTATGGACGATGACGCAGGT---------GGTGGTGCCCCAATTCTTCC--------------------------------------CGAC--A----AAAAGAAAACGGATC--------------------A------GAGCGTA----AAAAAGAGCGAAAAGGAAAACAAGTCGAACCCAGTTAGCAATAATAAGAATAAG------AACAATGC---TCAG---ACCAAAACAGCAAATGCGAATTCCGCCCATAAA----------CGA----------------------------------AA------TGG------------CGCTTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................TC--------------------A------GAGCGTA----AAAAAGAGCGA.................................................................................................................................................................................2111.00101
droWil2
GTTATTGTTTATGGACGATGACGCTGGA---------GCTCCAGTCGT---GCCAGTGGCCATA------AATGCCG--------GTGCCGGCGCTGGCAACGAGAAAAAGAAAACTGAAC------GCCCG------GCCACTGTACAACAGAAGAAGAGCAAGCCTGAAAAGGAGAATAAGCCAATTGTGCCAAATAATAAGAC---GAATGCACCAGTTAAAGC---T------------GGCACCA-------A------------TGTGCCAAAGG----------CAAAGTTGCCGGCGCCTGTTGGTGGACAAGTGATACGCAACAA------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................GTACAACAGAAGAAGAGCAAGCCT...................................................................................................................................................................................2412.00210100
....................................................................................................................................................................................................................................................................................................AAAGTTGCCGGCGCCTGTTGGT.................................2221.50300030
.....................................................................................................................................................ACAGAAGAAGAGCAAGCCTT..................................................................................................................................................................................2011.00100001
..........................................................................................................................................................................................................................AGTTAAAGC---T------------GGCACCA-------A------------TGTGCCAAAGG----------........................................................2911.00100010
........TTATGGACGATGACGCTGGA---------......................................................................................................................................................................................................................................................................................................................2021.00200110
.........................GGA---------GCTCCAGTCGT---GCCAGTGGCCA.............................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................AAGAGCAAGCCTGAAAAG.............................................................................................................................................................................1811.00100010
......................................................AGTGGCCATA------AATGCCG--------GTGCCGGCGC............................................................................................................................................................................................................................................................2711.00101000
.........................GGA---------GCTCCAGTCGT---GCCAGTGGC...............................................................................................................................................................................................................................................................................................2311.00100010
.........................GGA---------GCTCCAGTCGT---GCCAGTGGCC..............................................................................................................................................................................................................................................................................................2411.00100100
......................................................................................................................................................................................................................................................................................................................TGGTGGACAAGTGATACGC..................1921.00200020
......................................CTCCAGTCGT---GCCAGTGGC...............................................................................................................................................................................................................................................................................................1911.00100010
.....................................GCTCCAGTCGT---GCCAGTGGCC..............................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................AAGCCTGAAAAGGAGAATAAGCC..................................................................................................................................................................2311.00100010
..........................GA---------GCTCCAGTCGT---GCCAGTGGCCATA------.....................................................................................................................................................................................................................................................................................2611.00100010
...........................A---------GCTCCAGTCGT---GCCAGTGGCCATA------AA...................................................................................................................................................................................................................................................................................2711.00100010
GTTATTGTTTATGGACGAT........................................................................................................................................................................................................................................................................................................................................1921.00200020
.........................................................................................................................................................................................................................................................A-------A------------TGTGCCAAAGG----------CAAAGT..................................................1911.00101000
..................................................................................................................................................................................................................................................................................................................CTGTTGGTGGACAAGTGAT......................1921.00200020
...................................................................................................................................................................................................................................................................................................CAAAGTTGCCGGCGCCTGTTGGT.................................2321.00200020
..............ACGATGACGCTGGA---------GCTCCAGTCGT---........................................................................................................................................................................................................................................................................................................2521.00200020
.................................................................................................................AACTGAAC------GCCCG------GCCACTGTACAAC....................................................................................................................................................................................................2621.00220000
........TTATGGACGATGACGCTGGA---------GCTCCAGT..............................................................................................................................................................................................................................................................................................................2821.00201010
.........................GGA---------GCTCCAGTCGT---GCCAGTGGCCAT............................................................................................................................................................................................................................................................................................2611.00100010
...........................A---------GCTCCAGTCGT---GCCAGTGGCC..............................................................................................................................................................................................................................................................................................2211.00100010
.......................CTGGA---------GCTCCAGTCGT---GCCAGTGGCC..............................................................................................................................................................................................................................................................................................2611.00100100
.....................................................................................................................................................................................................................................................................................AAGG----------CAAAGTTGCCGGCGCCT.......................................2120.50100010
....TTGTTTATGGACGATGACGCTGGA---------......................................................................................................................................................................................................................................................................................................................2420.50100010
............GGACGATGACGCTGGA---------GCTCCAGTCGT---........................................................................................................................................................................................................................................................................................................2720.50100010
.................................................................................................................AACTGAAC------GCCCG------GCCACT...........................................................................................................................................................................................................1920.50100010
..........................GA---------GCTCCAGTCGT---GCCAGTGG................................................................................................................................................................................................................................................................................................2120.50101000
....................................................................................................................................................................................................ATAATAAGAC---GAATGCACCA................................................................................................................................2020.50100100
................................................................................................................................................................................................................................................................................................................GCCTGTTGGTGGACAAGTGATACGCAAC...............2820.50100010
...........................................................................................................................................................................................................................GTTAAAGC---T------------GGCACCA-------A------------TGTGC........................................................................2220.50100100
.........TATGGACGATGACGCTGGA---------GCTCC.................................................................................................................................................................................................................................................................................................................2420.50100010
....................................................................................................ACGAGAAAAAGAAAACTGAAC------GCCC........................................................................................................................................................................................................................2520.50100100
......................................................................................................................................................................................................................................................................................................AGTTGCCGGCGCCTGTTGGT.................................2020.50100010
............................................................................................................................................................................................TGTGCCAAATAATAAGAC---GAAT......................................................................................................................................2220.50100010
.........................GGA---------GCTCCAGTCGT---GCCAGTGG................................................................................................................................................................................................................................................................................................2220.50101000
...............................................................................................................AAAACTGAAC------GCCCG------GCCACT...........................................................................................................................................................................................................2120.50100010
..................................................................................................................................CG------GCCACTGTACAACAGAAGAAGA...........................................................................................................................................................................................2420.50100010
............................................................................G--------GTGCCGGCGCTGGCAACGAGAA................................................................................................................................................................................................................................................2320.50100010
................................................................................................................................................................................................................................................................................................................GCCTGTTGGTGGACAAGTGATACGC..................2520.50100010
........TTATGGACGATGACGCTGGA---------GCTCCAGTC.............................................................................................................................................................................................................................................................................................................2920.50110000
................GATGACGCTGGA---------GCTCCAGTCGT---GCC.....................................................................................................................................................................................................................................................................................................2620.50100010
....................................................................................................................................................................................................ATAATAAGAC---GAATGCACCAGT..............................................................................................................................2220.50100100
..................................................................................................................................................................................................................................................................................................................CTGTTGGTGGACAAGTGATACGC..................2320.50100100
......................GCTGGA---------GCTCCAGTCGT---GCC.....................................................................................................................................................................................................................................................................................................2020.50100010
.............................................................................................GCTGGCAACGAGAAAAAGAAAA........................................................................................................................................................................................................................................2220.50100010
....................................................................................................................................................................................................................................................................................................................GTTGGTGGACAAGTGATAC....................1920.50101000
.......TTTATGGACGATGACGCTGGA---------......................................................................................................................................................................................................................................................................................................................2120.50100100
.......................................................................................................................................................................................................................................................................................................GTTGCCGGCGCCTGTTGGT.................................1920.50101000
.............................................................................................................................................................................................................................................................................................................GGCGCCTGTTGGTGGACAAGTG........................2220.50100010
..............................................................................................................................................................................GAGAATAAGCCAATTGTGCCAA.......................................................................................................................................................2220.50100010
..........................GA---------GCTCCAGTCGT---GCCAGT..................................................................................................................................................................................................................................................................................................1920.50100010
................GATGACGCTGGA---------GCTCCAGT..............................................................................................................................................................................................................................................................................................................2020.50100100
.......TTTATGGACGATGACGCT..................................................................................................................................................................................................................................................................................................................................1820.50100010
...............CGATGACGCTGGA---------GCTCCAGTC.............................................................................................................................................................................................................................................................................................................2220.50100010
.........................................................................................................AAAAAGAAAACTGAAC------GCCCG------GCCACTGT.........................................................................................................................................................................................................2920.50110000
................GATGACGCTGGA---------GCTCCAGTCGT---........................................................................................................................................................................................................................................................................................................2320.50100010
dp5
ACTATTGTCAACATATGACGAGGATGTC---------GCAAAAGCTAT---CTCTACAAAAATG------AATATCG--------GC------CTTAGCAAT------AAGAA------AC------AGATT------AAAA------AAACAGTCTTAAATAAACCGGAAAAGGAAAATAAGCCAATGACTGGAAACAATAACAA---TATTGG---------------TAAAACAGAAAAAATTTTAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TGT------------TACCAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................TAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TGA------------.......2211.0010000001000
...............TGACGAGGATGTC---------GCAAAAGCTAT---CTC.....................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................AA------AAACAGTCTTAAATAAACCGG..................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................ATTTTAA-------AACGAGTC--GTA----------GGA----------------------------------A.............................2211.0010100000000
droPer2
ACTATTGTCAACATATGACGAGGATGTC---------GCAACAGCTAT---CTCTATAAAAATG------AATGTCG--------GC------CTTAGCAAT------AAGAA------AC------AGATT------AAAA------AAACAGTCTTAAATAAACCGGAAAAGGAAAATAAGCCAATGACAGGAAACAATAACAA---TATTGG---------------TAAAACAGAAAAAATTGTAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TGT------------TACCAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................TG------AATGTCG--------GC------CTTAGCAAT------AAGAA------AC------............................................................................................................................................................................................................................2713.003300000
.......................................................ATAAAAATG------AATGTCG--------GC------CTT...........................................................................................................................................................................................................................................................2113.003300000
........................................................TAAAAATG------AATGTCG--------GC------CT............................................................................................................................................................................................................................................................1912.002200000
.......................................................................................................................................................................................................................................................TAA-------AACGAGTC--GTA----------GGA----------------------------------AA------TG....................2111.001100000
........CAACATATGACGAGGATGTC---------GCAACAG...............................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
ACTGTTGTTCATGGACGACGAGGATGCA---------GTTGCGT---C---GCAGGTGAAGGTG------GCCGCCATTGCGGT---------GCCGGC--T------AAGAAGCAGGAGG---------CT------CCCA------AGGCGCCTAAGAGCAAGCAGGAGAAGGAGAACAAGCCGGTGGCTCC---CAAAAAGGCGCCCAAC------------------GCGGTTGTCCAGGGCAAGA-------G------------CCCGGTGAAGG---G---CAACAAGC----------------------------------------------CTGTGSizeHit CountTotal NormTotal
No Reads
droFic1
GCTGTTGTTCATGGACGACGATGACTCC---------TCAGCGCCAGT---AAAGACACAGATT------CCCGCCGTAGTCGC---------GCCGGC--C------AAGAAGGCGGAGG---------CG---GCTCCAA------AGGCCCCGAAGAGCAAGCCGGAGAAGGAGAACAAGCCGGTAGCGTCGGCCCGCAAGGC---GAACAA---------------TCCGGCGGCAAAGAATGCAA-------G------------CCCCGTGAAGG---G---CGGAAAAGT----GC---CGGCTGGCGGGGAATCTGGTCGCACTAGGAAT------CCGSizeHit CountTotal NormTotal
No Reads
droEle1
GCTGTTGTTCATGGACGACGATGACTCCGCCGCCAACTCCGCTCCTGC---CCAGCCACAGACTGCCATTCCCGCCGTAGTTGC---------GCCGTC--C------AAGAAGGCGGAGC------AGCCG------GCCA------AGGCGGCAAAAAGCAAGCCGGAGAAGGAGAACAAGCCGGTGGCGTCGGCCCGCAAGGC---CAACAA---------CTCGAATCCGGTGGCCAAAAACACGA-------G------------TCCGGTGAAGGGAGTCGGCGGCAAAGG-AGCGC---CAACTGGCGGAGA------TCGCCCTAGG------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCTGTTGTTCATGGACGACGATGACTCC---------TCCGCGCCTGC---CCAGCCACAGATT------CCCGCCGTAGTGGC---------GCCGGC--C------AAGAAACCGGAGT---------CGCAAGCCCCCA------AGGCGCCCAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTGGTGTCGGTGCGTAAGGC---CAAC------------------CCGGCGGCGAAGAACGCCA-------G------------TCCCGTGAAGG---GTGGTGGCAAACC-GGTGC---CGTCTGGCGGGGATTCGGGTCGCACCCGG------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTGCTGTTCATGGACGACGATGACTCC---------TCCGCGCCTGC---CCAGCCACAGATTCCCACCGCTGCCGTAGTGGCGGC------GCCGGC--C------AAGAAACCGGAAC---------AG------CCGA------AGGTGGCCAAGAGCAAGCAGGAGAAGGAGAACAAGCCGGTGGCGTCGGCCCGCAAGGT---TAATAG---------CTCGAATCCGGCGGCCAAAAACGCGA-------G------------TCCGGTGAAGCCAGGCGGCGGCAAGTT-GGCGCCCTCTGCAGGCGGAGATTCGGGTCGCCCCAGGAACGCAGCCACASizeHit CountTotal NormTotal
No Reads
droEug1
GCTGTTGTTCATGGACGACGATGATTCT---------TCCGCGCCTGC---CCAACCACAGATT------CCCGCCGTAATCGC---------GCCGAC--C------AAGAAACCGGAAC---------CG------GCAA------AAGCCCCGAAGAGCAAGCAGGAAAAGGAAAATAAGCCGGTTGTGACGGCCCGTAAGGC---CAACAA---------------TCCTGCGGCGAAGAACTCAA-------G------------TCCTGTGAAAG---G---AGGCAAAGT----AA---CGGCTGGCGGAGATGTGA-----------------------SizeHit CountTotal NormTotal
No Reads
droSim2
GCTGTTGTTCATGGACGACGATGACTCC---------TCCGGGCTCGC---ACAGCCACAGATT------GCCGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAACAGGCAAAGGCG------GCAA------AGGCGCCAAAGAGTAAGTCCGAGAAGGAGAACAAGCCGGTTGTGGCGGCCCGCAAGGC---CAACGC---------------TCCGGTGGCGAAGAACGCGA-------G------------TCCGGTGAAAG---G---CGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGTCGCCCCAGGAACCCAACCGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........CATGGACGACGATGACTCC---------TCCGGGC...............................................................................................................................................................................................................................................................................................................2613.00300200001000000000
.......................................................................................................................................................................CGAGAAGGAGAACAAGCCGGTTGTGGC.........................................................................................................................................................2713.00300000010000020000
............................................TCGC---ACAGCCACAGATT------GCCG.................................................................................................................................................................................................................................................................................2112.00200000000000002000
..TGTTGTTCATGGACGA.........................................................................................................................................................................................................................................................................................................................................1612.00200000020000000000
....................................................................................................................................................................GTCCGAGAAGGAGAACAAGCC..................................................................................................................................................................2112.00200200000000000000
......................................................................................................................................................................CCGAGAAGGAGAACAAGCCGGTA..............................................................................................................................................................2312.00200000000000002000
.............................................CGC---ACAGCCACAGATT------GCCGC................................................................................................................................................................................................................................................................................2112.00200010000000001000
......................................................................................................................................................................................................................................TCCGGTGGCGAAGAACGCGA-------G------------.............................................................................2111.00100000000000001000
.............................................................................................................................................................................................................................................GCGAAGAACGCGA-------G------------TCCGGTT......................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................TCCGGTGGCGAAGAACGCGA-------G------------T............................................................................2211.00100000000000001000
..............................................................................................................GAAGCCGGAACAGGCAAAGGCG------GCAA------AGG....................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................................................................................................AGGC---CAACGC---------------TCCGGTGGCGAAGAA......................................................................................................2511.00100000000010000000
.............................................................................................................................AAAGGCG------GCAA------AGGCGCC................................................................................................................................................................................................1811.00100000000001000000
..............................................................................................................................................................................................................................................CGAAGAACGCGA-------G------------TCCGGTG......................................................................2011.00100000000000001000
.......................................................................................................................................................................................................................................................................................................GG----TC---CCGCTGGCGGGGATGTGGGTC....................2511.00100000000000100000
...GTTGTTCATGGACGACGA......................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.....................................................AGCCACAGATT------GCCGCCGT.............................................................................................................................................................................................................................................................................1911.00100001000000000000
.......................................CGGGCTCGC---ACAGCCACAGATT------GCCGC................................................................................................................................................................................................................................................................................2711.00100000000001000000
...................................................................................................................................................................................................................................................AACGCGA-------G------------TCCGGTGA.....................................................................1611.00100000010000000000
............................................................................GTAGTCGC---------GGCGCC--C------AAGA...........................................................................................................................................................................................................................................1911.00100000001000000000
...............................................................................................................................................................................................................................................................................CCGGTGAAAG---G---CGGCAAGGG----T.............................................2111.00100000000000001000
...................................................................................................................................................................................................................................................AACGCGA-------G------------TCCGGTGAAAG---G---CG.........................................................2211.00100000000001000000
.......TTCATGGACGACGATGAC..................................................................................................................................................................................................................................................................................................................................1811.00100000000010000000
.........................................................................................................................AGGCAAAGGCG------GCAA------AGGCGCCA...............................................................................................................................................................................................2311.00100000000001000000
..........................................................................................................................................................................GAAGGAGAACAAGCCGGTTGT............................................................................................................................................................2111.00100001000000000000
............................................................................GTAGTCGC---------GGCGCC--C------AAGAAGCCGGAA...................................................................................................................................................................................................................................2711.00100000001000000000
...............CGACGATGACTCC---------TCCGGGC...............................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...............CGACGATGACTCC---------TCCGGGCTTT............................................................................................................................................................................................................................................................................................................2311.00100000000000001000
..................CGATGACTCC---------TCCGGGCT..............................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................AGCCACAGATT------GCCGCCGTTT...........................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................GC---CAACGC---------------TCCGGTGGCGA..........................................................................................................1911.00100000000001000000
..............................................................................................................................................................GAGTAAGTCCGAGAAGGAGA.........................................................................................................................................................................2011.00100000010000000000
.............................................................................................................................................................................GGAGAACAAGCCGGTTGT............................................................................................................................................................1811.00100000000100000000
.....TGTTCATGGACGACGATGACTCC---------......................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
...........................................................................................................................................................................................................................................TGGCGAAGAACGCGA-------G------------TCCGGTGAAA...................................................................2611.00100000000010000000
...........................................................................................................................GCAAAGGCG------GCAA------AGGCGCC................................................................................................................................................................................................2011.00100000000001000000
.................ACGATGACTCC---------TCCGGGCTTTT---........................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.......................................................................................................................................................................................................................................CCGGTGGCGAAGAAC.....................................................................................................1511.00100000010000000000
......................................................................................................................................................................................................................................................................................................................TGGCGGGGATGTGGGTCGCCCCAGT............2511.00100000000001000000
................................................................................................................................................................................................................................................................................................CGGCAAGGG----TC---CCGCTGGCGGTA.............................2311.00100000000000001000
......................................................................................................................................................................................................................................TCCGGTGGCGAAGAACGCGA-------G------------TCCG.........................................................................2511.00100000000000010000
.........CATGGACGACGATGACTCC---------TCC...................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................CGGTGAAAG---G---CGGCAAGGG----TT---T........................................2211.00100000000000001000
...............................................................................................CGCC--C------AAGAAGCCGGAACAGG...............................................................................................................................................................................................................................2111.00100001000000000000
................................................................................................................................................................GTAAGTCCGAGAAGGAGAACAAGCC..................................................................................................................................................................2511.00101000000000000000
....TTGTTCATGGACGACGATGAC..................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..........ATGGACGACGATGACTCC---------TCC...................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................AGCCACAGATT------GCCGCCGTAG...........................................................................................................................................................................................................................................................................2111.00101000000000000000
........TCATGGACGACGATGACTCC---------TC....................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
........................................................CACAGATT------GCCGCCGTAGT..........................................................................................................................................................................................................................................................................1911.00101000000000000000
........................................................................................................................................................................................................................................................................................................G----TC---CCGCTGGCGGGGATGTGG.......................2111.00100100000000000000
.....................................................................................................................................................GGCGCCAAAGAGTAAGTCCGAGAAGGAGA.........................................................................................................................................................................2911.00100000000010000000
.........................................................................................................................................................................................................................................GGTGGCGAAGAACGCGA-------G------------TCC..........................................................................2111.00101000000000000000
....................ATGACTCC---------TCCGGGCTCGC---AC......................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................ACAGATT------GCCGCCGTAGTCGC---------..............................................................................................................................................................................................................................................................2111.00100000000000001000
.................ACGATGACTCC---------TCCGGGCTTT............................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................AAGAAGCCGGAACAGGCAAAG..........................................................................................................................................................................................................................2111.00100001000000000000
........................................................................................................................................................................................................................................................................................................G----TC---CCGCTGGCGGGGATGTGGGTC....................2411.00100000000000100000
................................................................................................................................................................................GAACAAGCCGGTTGTGGCGGC......................................................................................................................................................2111.00100000000000100000
..........................................................................................................................................................CAAAGAGTAAGTCCGAGAAGGAGAA........................................................................................................................................................................2511.00100000001000000000
.............................................................................................................................................................................................................................................GCGAAGAACGCGA-------G------------TCCG.........................................................................1811.00100001000000000000
...........................................................................................................................................................................................................................................TGGCGAAGAACGCGA-------G------------TCCGGTT......................................................................2311.00100000000000001000
.....TGTTCATGGACGACGATGACTC................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
......................................................................................................................................................................................................................................TCCGGTGGCGAAGAACGCGA-------G------------A............................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................CGGTGAAAG---G---CGGCAAGGG----TT---A........................................2211.00100000000000001000
.......................................................................................................................................................................CGAGAAGGAGAACAAGCCGGT...............................................................................................................................................................2111.00100000000000001000
........TCATGGACGACGATGACTCC---------TCCGGGC...............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................................TGGCGAAGAACGCGA-------G------------TCCGG........................................................................2111.00100000000000001000
...........................................................................CGTAGTCGC---------GGCGCC--C------AA.............................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................................................................................ACAAGCCGGTTGTGGCGGCCCGCAA................................................................................................................................................2511.00100000000001000000
.............................................................................................................................AAAGGCG------GCAA------AGGCGCCAA..............................................................................................................................................................................................2011.00100000000001000000
........................................................................................................................................................................................................CAAGGC---CAACGC---------------TCCGGT...............................................................................................................1811.00100001000000000000
......................................................................................................................................................................................................................................TCCGGTGGCGAAGAACGCGT-------T------------.............................................................................2111.00100000000000001000
......................................................................................................................................................................................................................C---------------TCCGGTGGCGAAGAACG....................................................................................................1811.00100001000000000000
..............................................................................................................GAAGCCGGAACAGGG..............................................................................................................................................................................................................................15100.20200000000020000000
droSec2
GCTGTTGTTCATGGACGACGATGACTCC---------TCCGGGCTCGC---ACAGCCACAGATT------GCCGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAACCGGCAAAGGCG------GCAA------AGGCGCCAAAGAGCAAGTCCGAGAAGGAGAACAAGCCGGTTGTGGCGGCTCGCAAGGC---CAACGC---------------TCCGGTGGCGAAGAACACGA-------G------------TCCGGTGAAAG---G---CGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGTCGCCCCAGGAACCCAACCGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................GCCAAAGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................2416.0060150
............................................................................................................................................................AAGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................2013.0030120
................................................................................................................AGCCGGAACCGGCAAAGGCG------GC...............................................................................................................................................................................................................2212.0020020
...................................................................................................................CGGAACCGGCAAAGGCG------GC...............................................................................................................................................................................................................1912.0020020
.........................................................................................................................................................................................................................................GGTGGCGAAGAACACGA-------G------------TCCGGT.......................................................................2412.0021010
........................................................................................................................................................................................................................................................................................................G----TC---CCGCTGGCGGGGATGTGGGTCGC..................2611.0010010
..........ATGGACGACGATGACTCC---------TCCGGGCTC.............................................................................................................................................................................................................................................................................................................2711.0010010
.....................................................................................................................................................................................AGCCGGTTGTGGCGGCTCGCAAGGC---..........................................................................................................................................2511.0010010
...................GATGACTCC---------TCCGGGCTCGC---ACA.....................................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................................................................................................................AACACGA-------G------------TCCGGTGAAAG---G---C..........................................................2111.0010010
........................CTCC---------TCCGGGCTCGC---ACAGCCACA...............................................................................................................................................................................................................................................................................................2411.0010010
...........................................................................................................................................................AAAGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................2111.0010010
...........................................................................................................................................................................................TTGTGGCGGCTCGCAAGGC---..........................................................................................................................................1911.0010001
..............................................................................................................................................................................GAGAACAAGCCGGTTGTGGCGGC......................................................................................................................................................2311.0010100
.................................................................................................................................................................................................................CAACGC---------------TCCGGTGGCGAAGAACACGA-------..........................................................................................2611.0010010
......................................................................................................................................................GCGCCAAAGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................2611.0010100
....................ATGACTCC---------TCCGGGCTCGC---AC......................................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................CGCAAGGC---CAACGC---------------TCCGGT...............................................................................................................2011.0010010
................................................................................................................................................................................GAACAAGCCGGTTGTGGCGG.......................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................GCTGGCGGGGATGTGGGTCGCCCC...............2411.0010100
..............................................................................................................................................................................................................................................CGAAGAACACGA-------G------------TCCGGTGAAAG---G---C..........................................................2611.0010100
.................................................................................................CC--C------AAGAAGCCGGAACCGGCAAAGGC........................................................................................................................................................................................................................2611.0010010
..............................................................................................................................................................................................................................................CGAAGAACACGA-------G------------TCCGGTGATT...................................................................2311.0010100
..........................................................................................................................GGCAAAGGCG------GCAA------AGGCGC.................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................CGCCAAAGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................................................GGTGAAAG---G---CGGCAAGGG----TC---CCG......................................2311.0010001
..........................................................................................................................GGCAAAGGCG------GCAA------AGGCGCC................................................................................................................................................................................................2111.0010010
............................................................................................................................................AA------AGGCGCCAAAGAGCAAGTCC...................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................AGAACACGA-------G------------TCCGGTGAAAG---G---C..........................................................2311.0010010
................................................................................................................................................................GCAAGTCCGAGAAGGAGAAC.......................................................................................................................................................................2011.0010010
..............................................................................AGTCGC---------GGCGCC--C------AAGAAGCCGGAACCGG...............................................................................................................................................................................................................................2911.0010010
..................................................................................................................................................................................................................................................GAACACGA-------G------------TCCGGTGAAAG---G---CGGCA......................................................2611.0010010
.....................................................................................................................................................................................................................................................................................AAAG---G---CGGCAAGGG----TC---CCGCTGGCGGG..............................2711.0010010
...............................................................................................................................................................................................................................................GAAGAACACGA-------G------------TCCGGT.......................................................................1811.0010010
..................................................................................................................................................................................................................................................................................GTGAAAG---G---CGGCAAGGG----TC---CCGCTGGC.................................2711.0010010
............................................................................................................................................AA------AGGCGCCAAAGAGCAAGTCCGAGAAGG............................................................................................................................................................................2911.0010100
.............................................................................................................................................................AGAGCAAGTCCGAGAAGGA...........................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................GAACACGA-------G------------TCCGGTGAAAG---G---C..........................................................2211.0010010
..............................................................................................GCGCC--C------AAGAAGCCGGAACCGGCAAAGG.........................................................................................................................................................................................................................2811.0010010
.................................................................................................................GCCGGAACCGGCAAAGGCG------GC...............................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................CACGA-------G------------TCCGGTGAAAG---G---CGGCAAGG...................................................2611.0010100
droYak3
GCTGTTGTTCATGGACGACGATGACTCCTCCG------CCGCGCCCGC---CCAGCCACAGATT------CCCGCCGTAGTCGC---------GGCGCC--T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCCGAAGGGCAAGTCCGAGAAGGAGAACAAGCCGGTAGCGTCGGCTCGCAAAGC---CAACGT---------------TCCGGCGGCCAAGAACGCGA-------G------------TCCAGTGAAGG---G---TGGCAAGGG----TC---CCGCTGGCGGGGATGTGGGCCGTCCCAGGAATGCAGCTACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................T------CCCGCCGTAGTCGC---------GGCGCC--T------AAGA...........................................................................................................................................................................................................................................2618.00800000000008
..............................................................................................................................................................................GAGAACAAGCCGGTAGCGTC.........................................................................................................................................................2013.00300300000000
..................................................................................................C--T------AAGAAGCCGGAAC---------CG------GCGA------AGGC...................................................................................................................................................................................................2513.00300200010000
................................................................................................................................................................................GAACAAGCCGGTAGCGTCGGC......................................................................................................................................................2112.00200200000000
..................................................................................................C--T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGC.................................................................................................................................................................................................2712.00200100010000
.....................................................................................................................GAAC---------CG------GCGA------AGGCGCCGAAGGGC.........................................................................................................................................................................................2412.00200010010000
..................................................................................................................................................................AAGTCCGAGAAGGAGAACAAGCCGGTAGC............................................................................................................................................................2912.00200000020000
...................................................................................................................CGGAAC---------CG------GCGA------AGGCGCCGAAGGGC.........................................................................................................................................................................................2612.00200000020000
...............CGACGATGACTCCTCCG------CCGC.................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................GCAAGGG----TC---CCGCTGGCGGGG.............................2111.00100010000000
.........................................................................................................................................................CCGAAGGGCAAGTCCGAGAAGG............................................................................................................................................................................2211.00100100000000
....................................................................................................................................................................................................................................................................................................AAGGG----TC---CCGCTGGCGGGGATGTGG.......................2511.00100100000000
............................................................................................................................................................................................................................................................................................G---TGGCAAGGG----TC---CCGCTGGCGGGG.............................2411.00101000000000
..................................................................................................................................................................................................GGCTCGCAAAGC---CAACGT---------------TCCGGCGGC............................................................................................................2711.00101000000000
......................................................................................................................................................................................................................................TCCGGCGGCCAAGAACGCGA-------G------------TCCAG........................................................................2611.00101000000000
...................................................................................................................................................................................................................................................................................................CAAGGG----TC---CCGCTGGCGG...............................1811.00101000000000
...................................................................................................................CGGAAC---------CG------GCGA------AGGCGCCGAAGGGCA........................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................G------------TCCAGTGAAGG---G---TGGCAAGG...................................................2111.00100100000000
..........ATGGACGACGATGACTCCTCC............................................................................................................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................GAACAAGCCGGTAGCGTCGGCT.....................................................................................................................................................2211.00100000010000
...........................................................AGATT------CCCGCCGTAGTCGC---------G.............................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................CAACGT---------------TCCGGCGGCCAAGAAC.....................................................................................................2211.00100100000000
............GGACGACGATGACTCCTCCG------CCGCGCC..............................................................................................................................................................................................................................................................................................................2711.00100100000000
..........................................................................................................................................................CGAAGGGCAAGTCCGAGAAGGAGAA........................................................................................................................................................................2511.00100000010000
............................................................................................................AAGAAGCCGGAAC---------CG------GCGA------AGGC...................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................GGAGAACAAGCCGGTAGCGTC.........................................................................................................................................................2111.00100100000000
........................................................................................................................................................GCCGAAGGGCAAGTCCGAGAAGGA...........................................................................................................................................................................2411.00100010000000
.....................TGACTCCTCCG------CCGCGCCC.............................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................................................................AAGAACGCGA-------G------------TCCAGTGAAGG---G---T..........................................................2411.00100000010000
................GACGATGACTCCTCCG------CCGCGCCC.............................................................................................................................................................................................................................................................................................................2411.00101000000000
.........CATGGACGACGATGACTCCT..............................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....................................................................................................................................................................................AGCCGGTAGCGTCGGCTCGCAAAGC---C.........................................................................................................................................2611.00100100000000
................GACGATGACTCCTCCG------CCGCGCC..............................................................................................................................................................................................................................................................................................................2311.00100100000000
....................ATGACTCCTCCG------CCGCGCC..............................................................................................................................................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................GGCCAAGAACGCGA-------G------------TCCAGTGAAGG---G---T..........................................................2811.00100000010000
......................................................................................................................................................................................................CGCAAAGC---CAACGT---------------TCCGGC...............................................................................................................2011.00100100000000
...............CGACGATGACTCCTCCG------CC...................................................................................................................................................................................................................................................................................................................1911.00100100000000
.......................................................................................................................................................................................................................................................................................................GG----TC---CCGCTGGCGGGGATGTGGGCC....................2511.00101000000000
...................................................CCAGCCACAGATT------CCCGCCGTAGTC.........................................................................................................................................................................................................................................................................2511.00100010000000
...................................................................................................................................................................................................................................................AACGCGA-------G------------TCCAGTGAAGG---G---TGG........................................................2311.00100000010000
................................................................................................GCC--T------AAGAAGCCGGAAC---------CG------GCGA------AGGC...................................................................................................................................................................................................2711.00100000100000
..................................................................................................C--T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCC................................................................................................................................................................................................2811.00100100000000
............................................................................................................AAGAAGCCGGAAC---------CG------GCGA------AGGCGCC................................................................................................................................................................................................2611.00100100000000
................................................................................................................................................................................................................................................................................................................................GTGGGCCGTCCCAGGAATGCA......2111.00100000010000
................................................................................................................................................................................................................................................................................................................................GTGGGCCGTCCCAGGAATGCAG.....2211.00100010000000
.........................................................ACAGATT------CCCGCCGTAGTCGC---------GGC...........................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................GGCTCGCAAAGC---CAACGT---------------TCCGGC...............................................................................................................2411.00100100000000
..........................................................................................................................................................CGAAGGGCAAGTCCGAGAAGG............................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................GGCGGGGATGTGGGCCGTCCCAGGG...........2511.00100000100000
...............................................................................................................................................................................AGAACAAGCCGGTAGCGTC.........................................................................................................................................................1911.00100010000000
.....................................................................................................T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCC................................................................................................................................................................................................2711.00100100000000
................................................................................................................................................................................GAACAAGCCGGTAGCGTCGG.......................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................GAACGCGA-------G------------TCCAGTGAAGG---G---T..........................................................2211.00100000010000
..........................................................................................................................................................CGAAGGGCAAGTCCGAGAAGGAG..........................................................................................................................................................................2311.00100000010000
............................................................................................................................................................................AGGAGAACAAGCCGGTAGCGTCG........................................................................................................................................................2311.00100000010000
................................................................................................................................................................................GAACAAGCCGGTAGCGTC.........................................................................................................................................................1811.00100010000000
.......................................................................................................................................................................................................................................................................................................GG----TC---CCGCTGGCGGGGATGTGGGCCG...................2611.00101000000000
...............................................................................................................................................................................AGAACAAGCCGGTAGCGTCGGC......................................................................................................................................................2211.00100000010000
.....................................................................................................T------AAGAAGCCGGAAC---------CG------GCGA------AGGCGC.................................................................................................................................................................................................2611.00100000010000
............................................................................GTAGTCGC---------GGCGCC--T------AAGAAGCCGGAAC---------C........................................................................................................................................................................................................................2911.00100100000000
..............................................................................................................................................................................................................................................................................................................................ATGTGGGCCGTCCCAGGAATGCA......2311.00101000000000
...................................................................................................................................................................................................................................................................................TGAAGG---G---TGGCAAGGG----TC---CCGCTGG..................................2511.00101000000000
..................................................................................................................................................................................................................................................................................GTGAAGG---G---TGGCAAGGG----TC---CCGCT....................................2411.00100000010000
.....................TGACTCCTCCG------CCGCGCCCGC---CCAGC...................................................................................................................................................................................................................................................................................................2611.00101000000000
....................................................................................................................GGAAC---------CG------GCGA------AGGCGCCGAAGGGC.........................................................................................................................................................................................2511.00100100000000
droEre2
GCTGTTGTTCATGGACGACGATGACTCCTCCG------CCGCTCCCGC---CCAGCCACAGATT------CCTGCCGTAGTCGC---------GGCGCC--C------AAGAAGCCGGAAC---------CG------GCGA------AGGCGCCAAAGGGCAAGTCAGAGAAGGAGAACAAGCCGGTAACTTCGGCCCGCAAGGC---CAACGC---------------TCCGGCGGTCAAGAACGTGA-------G------------TCCAGTGAAGG---G---TGGCAAGGG----TC---CCGCTGGCGGTGATGTGAGCCGTCCCAGG------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................GTAGTCGC---------GGCGCC--C------AAGAAGCC.......................................................................................................................................................................................................................................2312.0021100000
....................................................................................................................................................................................................................................................ACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2012.0020100100
............................................................GATT------CCTGCCGTAGTCGC---------G.............................................................................................................................................................................................................................................................1912.0021001000
..................................................................................................................................................................................................................................................GAACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2212.0020000200
........................................................................................................................................................................................................................................................................................G---G---TGGCAAGGG----TC---CCGCTGGCGGT..............................2411.0011000000
....................................................................................................................GGAAC---------CG------GCGA------AGGCGCCAAAGGG..........................................................................................................................................................................................2411.0011000000
.....................................................................................................................................................................................................................................................CGTGA-------G------------TCCAGTGAAGG---G---TGGCA......................................................2311.0010000100
.............................................................................................................................................................................................................................................GTCAAGAACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2711.0010000100
....................................................................................................................GGAAC---------CG------GCGA------AGGCGCCAAAGGGCAA.......................................................................................................................................................................................2711.0010000100
............................................................................................................................................................................................................GC---CAACGC---------------TCCGGCGGTCAAGA.......................................................................................................2211.0010100000
......................................................................................................................AAC---------CG------GCGA------AGGCGCCAAAGGGCA........................................................................................................................................................................................2411.0010001000
.......................................................................................................................................................................................................................................................TGA-------G------------TCCAGTGAAGG---G---TGGCAAGG...................................................2411.0011000000
.................................................................................................................................................................CAAGTCAGAGAAGGAGAACAAGCCG.................................................................................................................................................................2511.0010000100
...............................................................................................................................................................................................................................................CAAGAACGTGA-------G------------TCCAGT.......................................................................1811.0010000010
........................................................CACAGATT------CCTGCCGTAGTCG........................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................CAAGAACGTGA-------G------------TCCAGTGAAGG---...............................................................2311.0010001000
...........................................................................................................................................................AAAGGGCAAGTCAGAGAAGGAG..........................................................................................................................................................................2211.0010000100
..................................................................................................................................................................................................................................................................................GTGAAGG---G---TGGCAAGGG----TC---CCGCTGGC.................................2711.0010000100
......................................................................................................................AAC---------CG------GCGA------AGGCGCCAAAGGGC.........................................................................................................................................................................................2311.0010001000
..........................................................................................................................................................CAAAGGGCAAGTCAGAGAAGGA...........................................................................................................................................................................2211.0010100000
..................................................................................................................................................................................................................................................................................................GCAAGGG----TC---CCGCTGGCG................................1811.0010000010
...........................................................AGATT------CCTGCCGTAGTCGC---------GG............................................................................................................................................................................................................................................................2111.0011000000
...............CGACGATGACTCCTCCG------CCG..................................................................................................................................................................................................................................................................................................................2011.0010001000
................GACGATGACTCCTCCG------CCGCTCCCGC---C.......................................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................................................................................................................................................................................................................................AGG---G---TGGCAAGGG----TC---CCGCTGGCGGT..............................2611.0011000000
.................................................................................................................................................................................................................CAACGC---------------TCCGGCGGTCAAGAACGTG..................................................................................................2511.0010100000
.......................................................................................................................................................CGCCAAAGGGCAAGTCAGAGAAGGA...........................................................................................................................................................................2511.0010001000
...............................................................................................................................................................................................................................................CAAGAACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2511.0011000000
............................................................................................................................................................................................................................................GGTCAAGAACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2811.0010100000
..................................................................................................................................................................................................................................................................................GTGAAGG---G---TGGCAAGGG----TC---CCGCT....................................2411.0010000010
..........................................................................................................................................................CAAAGGGCAAGTCAGAGA...............................................................................................................................................................................1811.0010001000
........................................................................................................................................................................................................................................................................................................G----TC---CCGCTGGCGGTGATGTGAGCC....................2411.0010100000
...................GATGACTCCTCCG------CCGCTCCCGC---CC......................................................................................................................................................................................................................................................................................................2511.0010100000
...............................................................................................................................................................GGCAAGTCAGAGAAGGAG..........................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................A-------G------------TCCAGTGAAGG---G---TGGCAA.....................................................2011.0011000000
.....................TGACTCCTCCG------CCGCTCCCGC---CCAGC...................................................................................................................................................................................................................................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................CCAGTGAAGG---G---TGGCAAGG...................................................1911.0010001000
..............................................................................................................................................................................................................................................TCAAGAACGTGA-------G------------TCCAGTGAAGG---G---T..........................................................2611.0011000000
............................................................................................................AAGAAGCCGGAAC---------CG------GCGA------AGGCGC.................................................................................................................................................................................................2511.0010100000
................................................................................................................................................................................................................................................................................CAGTGAAGG---G---TGGCAAGGG----TC---CCGCTGGC.................................2911.0010100000
................................................................................TCGC---------GGCGCC--C------AAGAAGCCGGAAC---------CG------G................................................................................................................................................................................................................2711.0010000001
..............................................................................................................................................................................................................................................................................................................C---CCGCTGGCGGTGATGTGA.......................1911.0011000000
............GGACGACGATGACTCCTC.............................................................................................................................................................................................................................................................................................................................1811.0010100000
....................ATGACTCCTCCG------CCGCTCCCGC---C.......................................................................................................................................................................................................................................................................................................2311.0011000000
.........................TCCTCCG------CCGCTCCCGC---CCAGCCA.................................................................................................................................................................................................................................................................................................2411.0011000000

Generated: 05/16/2015 at 11:36 PM