ID:

dvi_14768

 Coordinate:

scaffold_13042:4643577-4643766 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_16008:3]; exon [dvir_GLEANR_16008:4]; CDS [Dvir\GJ15560-cds]; CDS [Dvir\GJ15560-cds]; intron [Dvir\GJ15560-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATCATAAGCAATGAGTTCTGCGAGCGTTTCAACTATTATGGCATGCGTGGTAAGTACTTCTCGATCTGAATGCTCTCTGCCTCTACCTGCTCCTCCTTCCTTCTCACGTACTCCCCTCCTCTCTGGCCACTCCACCACATGATAAGTACTCCTCGATCTCTATGCCACCCCCCTCCTCCCCTAAGACCCCTCCTCCCCCTAGCCTGAATAGTAATTCTCTAAATTAATATCTCCCACAGCGATTCTGGTGCTTTATCTGACGCACAAGCTAGGCTACGACGAGGAGACG
**************************************************...(((((((.(((........((.....)).....................................((.....)).............))).))))))).................................................(((...((((....)))).)))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060688
160_ovaries_total
............................................................................................................................................................................................................................................................................GCTAGGCTACGACGAGGAGAC. 21 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................................................................................................AAGCTAGGCTACGACGAGGA.... 20 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................TCCCACTGCGATGCTGGT........................................ 18 2 4 0.75 3 0 0 2 1
............CGAGTTCTGGGAGCGTTT.................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0
...............................................................................................................................................TAAGTACGCCTTGATCCCTA............................................................................................................................... 20 3 8 0.13 1 1 0 0 0

Anti-sense strand reads

GTAGTATTCGTTACTCAAGACGCTCGCAAAGTTGATAATACCGTACGCACCATTCATGAAGAGCTAGACTTACGAGAGACGGAGATGGACGAGGAGGAAGGAAGAGTGCATGAGGGGAGGAGAGACCGGTGAGGTGGTGTACTATTCATGAGGAGCTAGAGATACGGTGGGGGGAGGAGGGGATTCTGGGGAGGAGGGGGATCGGACTTATCATTAAGAGATTTAATTATAGAGGGTGTCGCTAAGACCACGAAATAGACTGCGTGTTCGATCCGATGCTGCTCCTCTGC
**************************************************...(((((((.(((........((.....)).....................................((.....)).............))).))))))).................................................(((...((((....)))).)))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 V053
head
 SRR060676
9xArg_ovaries_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060683
160_testes_total
 M047
female body
 SRR060657
140_testes_total
 SRR060684
140x9_0-2h_embryos_total
...................................................................................................................................................................................................GGGGGATCGGATTTGTCA............................................................................. 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................CGGAGGGGGCAGGCGGGGATTC........................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGGGGATCGGATTTGTCAC............................................................................ 19 3 7 0.29 2 0 0 1 1 0 0 0 0 0
.....................................................................................................................................................................................GATTTTTGGGAGGAGGGGG.......................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................................................................GATGTACGAGGATGAAGG............................................................................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................GGGGACGAGGGGATTGTGG..................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................ATGAGCTAGTGATATGGTG......................................................................................................................... 19 3 7 0.14 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................GGGCAGGCGGTGATTCTG...................................................................................................... 18 3 19 0.11 2 0 0 0 0 0 2 0 0 0
..................................................................................................................................................................................................................................TGATAGAGGGTGGTGCTAA............................................. 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGTATTCTGGGGTAGAGGG............................................................................................ 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................TGAGTTGGTGTACTACTCC.............................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGACAGAGGGTGTTGCTAA............................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................AGAGTGCACCAGGAGAGG.......................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:4643527-4643816 - dvi_14768 CATCATAAGCA-ATGAGTTCTGCGAGCGTTTCAACTATTATGGCATGCGTGGTAAGTACTTCTCGATCTGA-------------------ATG--CTCTC-----TGCCTCTACCTGCTCCTCCTTCCTTCTCA---------------------------------------CG---TACTCCCCTCCTCT------CTGGC---CACTCCACCACAT-------------GATAAGTAC---------TCCTCGATCTCT-ATGC-----CACC------------------------CCCCTCCTCCCCTAAGACCCCTC----CTCCCC--CTAGCCTGAATAGTAATTCTCTAAATTAATA-------------TCTC------------------------------------------------------------------------------------------------CCACAGCGATTCTGGTGCTTTATCTGACGCACAAGCTAGGCTACGACGAGGAGACG
droMoj3 scaffold_6328:3920841-3921068 + TATCATCAGCA-ATGAGTTCTGCGAGCGCTTCAACTATTATGGCATGCGCAGTAAGTAGTG--------A-----------------------AC----------------------------------------------------------------------------------------------------------------------------GAAACTCG------------------------------------------------T-A-----------------------------------------------------------------------------------------------------TCTTCCGTATCTCACGAATCTACCAAAAATGTTCGTGATTTCTTTTTACGAGACTTCTTGGATAAATCCCGCTA-ATCCTTTTTCTTCTTATTTCACCATCCGTAGCTGTCCTGGTCCTCTATTTGAGCAGACAGCTGGGCTACTCGGACGACACG
droGri2 scaffold_15081:2856666-2856734 + CATCATCAGCA-ATGAGTTCTGCGAGCGTTTCAACTATTACGGCATGCGTGGTAAGTAATCCGAAATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004837:1347719-1347834 - TCCGCC-TCCA-CTTACTCCTCC-----------------------------------------------------------------------------------------------------TTCCTCC------TATCTTTGC--------------------------AGTAGTAGAA--CCT----------------------------------------------------------------CCTCATCCTCC----T-----CATC------------------------CTCCCCTCCTCCTGGTGCTCCTT----TTCCCCATCCAACCAGCATTGTG-----------------------------------------------------------------------------------------------------------GCTC--------------------------------------------------------------------------
dp5 XL_group1e:6905030-6905127 - CATCATTAGCA-ATGAGTTCTGCGAACGCTTCAACTACTATGGCATGCGCAGTGAGTACCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAG------------------------------------------------T-A-----------------------------------------------------------------------------------------------------------------------------------------------------CGAG-----TGGGATATGTCCTGCAC-ATCCTTC--------------------------------------------------------------------------
droPer2 scaffold_23:542322-542415 + GAGTTGATTGC---------TC----------------------------------------------------------------------------TC-----TACCTCT--CTACCTCTCTCTCTCTCTCT---------------------------------------CT---CTCTCTCTCTCTCT------CTATCTCTCTCTTCATCGTGC-------------AATGTGTGC---------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG--------------------------------------------------------------------------
droAna3 scaffold_13266:13091154-13091339 + GTGTGTGTGGTAACAGATACTCCACCTAGCTC---------------------------------------------------------------CTCTT-----AGCTCCATCTAGCTCCTCCTAACTCC----------TTC-----------------------------CT---AGCTCCCTC-CTAGCTCCCTCCTAG---CTCCTCCCTAGACGCTACTAGCTCCTTCTAGCTAC---------TCCTAGCTCCTTCCTAG-----CTCC------------------------TCCTAGCTCCTTCCAGCTCCTTCCAAGCTCC---------------------------------------------------------------------------------------------------------------------------TCCTAGC--------------------------------------------------------------------------
droBip1 scf7180000396764:27618-27710 + CTCCCCCTGCT-CTGTCAC-----------------------------------------------------------------------------------------------------------TCCGCTCG---------------------------------------CG---CTCTCCTTGCCATT------CTCGC---CG-----------CTCTCCTG------------------------------------------------C-ATGACATCGCCGCTCATT-GCCG--------------------------G--------------------------------------------------------------------------------------------------------------------------CTCCCACATCCC--------------------------------------------------------------------------
droKik1 scf7180000302517:73611-73938 + TATTATCAGCA-ATGAGTTCTGTGAGCGCTTCAACTACTATGGCATGCGCAGTAAGTATTTCCA----TGATGATACCATAAACCCCTAAATC--TTTTAATAATCATCTCCAAATAATCATCTT--CTTA---TAATCATCTTCTAATAATCATCTTCTAATATTCATCTT-CT---AATAATCATC------------------------------TTCTAATAATCATCTCCAAATAATCATCTTCTTAT--------ATTCATCTCCTAATAAT-------CATCTTCT-T-ATAA-TCATCTTCTCCTAAT--------AAAC-------------------------------------ATCTCTATTCCCTCCC--------------------------------------------------------------------------------------------------TTGTAGCCATTCTGGTGCTGTATCTTACCAACAAGCTGGGCTACAACGAGGAGACC
droFic1 scf7180000453901:699074-699163 - CATCATCAGCA-ACGAGTTCTGCGAGCGCTTCAACTACTACGGAATGAGAAGTGTGTAGATCTC----TG-----------------------GG----------------------------------------------------------------------------------------------------------------------------TCTCCCTG------------------------------------------------C-A---------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------TTTCTGTCCTTC--------------------------------------------------------------------------
droEle1 scf7180000491018:210589-210700 - CATCATCAGTA-ACGAATTCTGCGAGCGTTTCAACTACTACGGCATGAGAAGTGGGTGCTTCCC----TT-----------------------GA----------------------------------------------------------------------------------------------------------------------------GACATAAT------------------------------------------------CAACTGAATCCTCACTAACCCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAACTCAC--------------------------------------------------------------------------
droRho1 scf7180000779841:196571-196696 + AGTGCTCTGTG-CCTTTCC--------------TAT----------------------------------------------------------------------------ACCAGCCCCCCCTCTCCCCTCCTGATTTTTCCGC--------------------------AATACCCAAT--CCC---CA------CTCGG---TTTTCCA-------------G------------------------CCCCATTTTCG----C-----CACC------------------------CCCCTCCCCCTCCAAC-------------------------------------------------------------------------------------------------------------------------------------ACTG-CTTTTCC--------------------------------------------------------------------------
droBia1 scf7180000302421:2528880-2528972 - CCCCTCTATTC-GAAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTACAAACCTTGTA-------------TCTT--------------------------------------------------------------------------------------------------CCAGCCATTCTGGTGTTGTATCTCACCAACAAGCTGGGCTACAATGAGGAGACC
droTak1 scf7180000415763:156408-156551 - CTTCTCGTCCA-CTGTGGTGTCCTCCTC--------------------------------------------------------------------------------CTCCTCCTCCTCGCTCTC-CTCC-----------TCCT-----------------------CGGACT---CGCTCTCCTCCTCG------CTTTC---CTCCTCCTCGGAC-------------TCGGTTTCC---------TCTTCGGTCTCC----T-----CCTCCT-------CCTCCTCCTC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------TCCT-CTTCTTC--------------------------------------------------------------------------
droEug1 scf7180000409553:9439-9498 - CATCATCAGTA-ATGAGTTTTGCGAGCGATTCAATTATTATGGCATGCGAAGTGAGTAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:3759384-3759440 - CATCATCAGCA-ATGAGTTCTGCGAGCGATTCAACTACTATGGCATGCGCAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:3468256-3468364 + CATCATCAGTA-ACGAATTTTGCGAACGTTTCAACTACTACGGCATGAGGAGTAAGTTAATCGC----AA-----------------------AG----------------------------------------------------------------------------------------------------------------------------GATCTTAG------------------------------------------------C-ATGGAATCACTGCTAATC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------GTTC-TTCTTTC--------------------------------------------------------------------------
droSec2 scaffold_4:2937059-2937167 - CATCATCAGTA-ACGAATTCTGCGAACGTTTCAACTACTACGGCATGAGGAGTAAGTTAATCGC----AA-----------------------AG----------------------------------------------------------------------------------------------------------------------------GATCTTAG------------------------------------------------C-ATGGAATCACTGCTAATC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------GTTC-TTCTTTC--------------------------------------------------------------------------
droYak3 X:4655357-4655413 + CATCATTAGCA-ATGAGTTCTGCGAGCGCTTCAACTACTATGGCATGCGCAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:1143351-1143412 - CATCATAAGCA-ATGAGTTCTGCGAGCGCTTCAACTACTATGGCATGCGCAGTGAGTAACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CATCATAAGCA-ATGAGTTCTGCGAGCGTTTCAACTATTATGGCATGCGTGGTAAGTACTTCTCGATCTGA-------------------ATG--CTCTC-----TGCCTCTACCTGCTCCTCCTTCCTTCTCA---------------------------------------CG---TACTCCCCTCCTCT------CTGGC---CACTCCACCACAT-------------GATAAGTAC---------TCCTCGATCTCT-ATGC-----CACC------------------------CCCCTCCTCCCCTAAGACCCCTC----CTCCCC--CTAGCCTGAATAGTAATTCTCTAAATTAATA-------------TCTC------------------------------------------------------------------------------------------------CCACAGCGATTCTGGTGCTTTATCTGACGCACAAGCTAGGCTACGACGAGGAGACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCTACGACGAGGAGAC.2111.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAGGCTACGACGAGGA....2011.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
TATCATCAGCA-ATGAGTTCTGCGAGCGCTTCAACTATTATGGCATGCGCAGTAAGTAGTG--------A-----------------------AC----------------------------------------------------------------------------------------------------------------------------GAAACTCG------------------------------------------------T-A-----------------------------------------------------------------------------------------------------TCTTCCGTATCTCACGAATCTACCAAAAATGTTCGTGATTTCTTTTTACGAGACTTCTTGGATAAATCCCGCTA-ATCCTTTTTCTTCTTATTTCACCATCCGTAGCTGTCCTGGTCCTCTATTTGAGCAGACAGCTGGGCTACTCGGACGACACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGGCTACTCGGACGAC...2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGGGCTACTCGGAC......2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATTTGAGCAGACAGCTGGGC...............2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTGAGCAGACAGCTGGGC...............2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAGACAGCTGGGCTACTCGGA.......2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCTGGGCTACTCGGAC......2111.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTGAGCAGACAGCTGG.................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCTGGGCTACTCGGA.......2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGCTGGGCTACTCGGAC......2411.001100000
....ATCAGCA-ATGAGTTCTGCGAGCGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGCTGGGCTACTCGGAC......2311.001000001
.......AGCA-ATGAGTTCTGCGAGCGCTTCAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAGACAGCTGGGCTACTCGGAC......2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAGACAGCTGGGCTACTCGGA.......2611.001100000
................GTTCTGCGAGCGCTTCAACTATTATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droGri2
CATCATCAGCA-ATGAGTTCTGCGAGCGTTTCAACTATTACGGCATGCGTGGTAAGTAATCCGAAATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCCGCC-TCCA-CTTACTCCTCC-----------------------------------------------------------------------------------------------------TTCCTCC------TATCTTTGC--------------------------AGTAGTAGAA--CCT----------------------------------------------------------------CCTCATCCTCC----T-----CATC------------------------CTCCCCTCCTCCTGGTGCTCCTT----TTCCCCATCCAACCAGCATTGTG-----------------------------------------------------------------------------------------------------------GCTC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CATCATTAGCA-ATGAGTTCTGCGAACGCTTCAACTACTATGGCATGCGCAGTGAGTACCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAG------------------------------------------------T-A-----------------------------------------------------------------------------------------------------------------------------------------------------CGAG-----TGGGATATGTCCTGCAC-ATCCTTC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GAGTTGATTGC---------TC----------------------------------------------------------------------------TC-----TACCTCT--CTACCTCTCTCTCTCTCTCT---------------------------------------CT---CTCTCTCTCTCTCT------CTATCTCTCTCTTCATCGTGC-------------AATGTGTGC---------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG--------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................ACCTCTCTCTCTCTCTCT---------------------------------------CT---C....................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
GTGTGTGTGGTAACAGATACTCCACCTAGCTC---------------------------------------------------------------CTCTT-----AGCTCCATCTAGCTCCTCCTAACTCC----------TTC-----------------------------CT---AGCTCCCTC-CTAGCTCCCTCCTAG---CTCCTCCCTAGACGCTACTAGCTCCTTCTAGCTAC---------TCCTAGCTCCTTCCTAG-----CTCC------------------------TCCTAGCTCCTTCCAGCTCCTTCCAAGCTCC---------------------------------------------------------------------------------------------------------------------------TCCTAGC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTCCCCCTGCT-CTGTCAC-----------------------------------------------------------------------------------------------------------TCCGCTCG---------------------------------------CG---CTCTCCTTGCCATT------CTCGC---CG-----------CTCTCCTG------------------------------------------------C-ATGACATCGCCGCTCATT-GCCG--------------------------G--------------------------------------------------------------------------------------------------------------------------CTCCCACATCCC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATTATCAGCA-ATGAGTTCTGTGAGCGCTTCAACTACTATGGCATGCGCAGTAAGTATTTCCA----TGATGATACCATAAACCCCTAAATC--TTTTAATAATCATCTCCAAATAATCATCTT--CTTA---TAATCATCTTCTAATAATCATCTTCTAATATTCATCTT-CT---AATAATCATC------------------------------TTCTAATAATCATCTCCAAATAATCATCTTCTTAT--------ATTCATCTCCTAATAAT-------CATCTTCT-T-ATAA-TCATCTTCTCCTAAT--------AAAC-------------------------------------ATCTCTATTCCCTCCC--------------------------------------------------------------------------------------------------TTGTAGCCATTCTGGTGCTGTATCTTACCAACAAGCTGGGCTACAACGAGGAGACCSizeHit CountTotal NormTotal
No Reads
droFic1
CATCATCAGCA-ACGAGTTCTGCGAGCGCTTCAACTACTACGGAATGAGAAGTGTGTAGATCTC----TG-----------------------GG----------------------------------------------------------------------------------------------------------------------------TCTCCCTG------------------------------------------------C-A---------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------TTTCTGTCCTTC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CATCATCAGTA-ACGAATTCTGCGAGCGTTTCAACTACTACGGCATGAGAAGTGGGTGCTTCCC----TT-----------------------GA----------------------------------------------------------------------------------------------------------------------------GACATAAT------------------------------------------------CAACTGAATCCTCACTAACCCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAACTCAC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTGCTCTGTG-CCTTTCC--------------TAT----------------------------------------------------------------------------ACCAGCCCCCCCTCTCCCCTCCTGATTTTTCCGC--------------------------AATACCCAAT--CCC---CA------CTCGG---TTTTCCA-------------G------------------------CCCCATTTTCG----C-----CACC------------------------CCCCTCCCCCTCCAAC-------------------------------------------------------------------------------------------------------------------------------------ACTG-CTTTTCC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCCCTCTATTC-GAAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTACAAACCTTGTA-------------TCTT--------------------------------------------------------------------------------------------------CCAGCCATTCTGGTGTTGTATCTCACCAACAAGCTGGGCTACAATGAGGAGACCSizeHit CountTotal NormTotal
No Reads
droTak1
CTTCTCGTCCA-CTGTGGTGTCCTCCTC--------------------------------------------------------------------------------CTCCTCCTCCTCGCTCTC-CTCC-----------TCCT-----------------------CGGACT---CGCTCTCCTCCTCG------CTTTC---CTCCTCCTCGGAC-------------TCGGTTTCC---------TCTTCGGTCTCC----T-----CCTCCT-------CCTCCTCCTC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------TCCT-CTTCTTC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CATCATCAGTA-ATGAGTTTTGCGAGCGATTCAATTATTATGGCATGCGAAGTGAGTAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CATCATCAGCA-ATGAGTTCTGCGAGCGATTCAACTACTATGGCATGCGCAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........A-ATGAGTTCTGCGAGCGATTCAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATTCAACTACTATGGCATGCGCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCAGCA-ATGAGTTCTGCGAGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGAGTTCTGCGAGCGATTCAACTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-ATGAGTTCTGCGAGCGATTCAACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-ATGAGTTCTGCGAGCGATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCAGCA-ATGAGTTCTGCGAGCGATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCGAGCGATTCAACTACTATGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........A-ATGAGTTCTGCGAGCGATTCAACTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGAGTTCTGCGAGCGATTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........A-ATGAGTTCTGCGAGCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATCAGCA-ATGAGTTCTGCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGAGTTCTGCGAGCGATTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGGCATGCGCAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...................CTGCGAGCGATTCAACTACTATGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......CAGCA-ATGAGTTCTGCGAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCA-ATGAGTTCTGCGAGCGATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GATTCAACTACTATGGCATGCGCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................GATTCAACTACTATGGCATGCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......AGCA-ATGAGTTCTGCGAGCGATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCGAGCGATTCAACTACTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....TCAGCA-ATGAGTTCTGCGAGCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCTGCGAGCGATTCAACTACTATGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATCATCAGCA-ATGAGTTCTGCGAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTGCGAGCGATTCAACTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCAGCA-ATGAGTTCTGCGAGCGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCA-ATGAGTTCTGCGAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGAGTTCTGCGAGCGATTCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTGCGAGCGATTCAACTACTATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCA-ATGAGTTCTGCGAGCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCA-ATGAGTTCTGCGAGCGATTCAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................GAGCGATTCAACTACTATGGCATGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATCAGCA-ATGAGTTCTGCGAGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATCAGCA-ATGAGTTCTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATCAGCA-ATGAGTTCTGCGAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGATTCAACTACTATGGCATGCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCGAGCGATTCAACTACTATGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCAGCA-ATGAGTTCTGCGAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCA-ATGAGTTCTGCGAGCGATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-ATGAGTTCTGCGAGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-ATGAGTTCTGCGAGCGATTCAACTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATCATCAGCA-ATGAGTTCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........CA-ATGAGTTCTGCGAGCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...CATCAGCA-ATGAGTTCTGCGAGCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CTACTATGGCATGCGCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ACTATGGCATGCGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
CATCATCAGTA-ACGAATTTTGCGAACGTTTCAACTACTACGGCATGAGGAGTAAGTTAATCGC----AA-----------------------AG----------------------------------------------------------------------------------------------------------------------------GATCTTAG------------------------------------------------C-ATGGAATCACTGCTAATC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------GTTC-TTCTTTC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
CATCATCAGTA-ACGAATTTTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.00606000000000000000
....ATCAGTA-ACGAATTTTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...CATCAGTA-ACGAATTTTGCGAACGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
...CATCAGTA-ACGAATTTTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
....................TGCGAACGTTTCAACTACTACGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
.ATCATCAGTA-ACGAATTTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
......CAGTA-ACGAATTTTGCGAACGTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
CATCATCAGTA-ACGAATTTTGCGAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.................TTTTGCGAACGTTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......CAGTA-ACGAATTTTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............................TTCAACTACTACGGCATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
............................................................................................................................................................................................................................ATCTTAG------------------------------------------------C-ATGGAATA..........................................................................................................................................................................................................................................................1650.20100000000100000000
droSec2
CATCATCAGTA-ACGAATTCTGCGAACGTTTCAACTACTACGGCATGAGGAGTAAGTTAATCGC----AA-----------------------AG----------------------------------------------------------------------------------------------------------------------------GATCTTAG------------------------------------------------C-ATGGAATCACTGCTAATC-GCTC-----------------------------------------------------------------------------------------------------------------------------------------------------GTTC-TTCTTTC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...CATCAGTA-ACGAATTCTGCGAACGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040130
........GTA-ACGAATTCTGCGAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030210
..........A-ACGAATTCTGCGAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030030
......CAGTA-ACGAATTCTGCGAACGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020110
...CATCAGTA-ACGAATTCTGCGAACGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020020
..............................TCAACTACTACGGCATGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200
...CATCAGTA-ACGAATTCTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021010
.............................TTCAACTACTACGGCATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....ATCAGTA-ACGAATTCTGCGAACGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
................ATTCTGCGAACGTTTCAACTACTACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
...........................GTTTCAACTACTACGGCATGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
...............................CAACTACTACGGCATGAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........TA-ACGAATTCTGCGAACGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.............................TTCAACTACTACGGCATGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.................................ACTACTACGGCATGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........A-ACGAATTCTGCGAACGTTTCAACTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
...................CTGCGAACGTTTCAACTACTACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....................TGCGAACGTTTCAACTACTACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...............................CAACTACTACGGCATGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
....ATCAGTA-ACGAATTCTGCGAACGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
CATCATCAGTA-ACGAATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
......CAGTA-ACGAATTCTGCGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................CAACTACTACGGCATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............GAATTCTGCGAACGTTTCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................ACGTTTCAACTACTACGGCATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..............GAATTCTGCGAACGTTTCAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
CATCATTAGCA-ATGAGTTCTGCGAGCGCTTCAACTACTATGGCATGCGCAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................CTTCAACTACTATGGCATGCGCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25111.0011000000000011
droEre2
CATCATAAGCA-ATGAGTTCTGCGAGCGCTTCAACTACTATGGCATGCGCAGTGAGTAACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/16/2015 at 10:00 PM