ID:

dvi_14643

 Coordinate:

scaffold_13042:3607610-3607760 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.5 -1.4 -1.1

Flybase annnotation

CDS [Dvir\GJ15970-cds]; exon [dvir_GLEANR_16396:3]; intron [Dvir\GJ15970-in]

No Repeatable elements found

mature
star
  1. dvi_11877  scaffold_12963:14535828-14535842 -
  2. dvi_14643  scaffold_13042:3607665-3607679 +
  3. scaffold_13049:7397141-7397155 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAAGGGAAAACAAGCAAAGAAAAATGGATGCATTTACACGCACTTTTCATAAAACTTTTCGCACAACAACTACAACAAAAACCAGCCCAAGGTCTCAAATTTATGATTTGTATCTAACCTCTTTAATTTGATATGTTACCTTTTTTTTCGTGTAATTATTCTCAACTAATTCTGGTTTTCCCAAAAATTATGCTTGCAGCTCAACGACAAACTCGGCGCTGCCCTCACGCGTGCCCAAGCAACAGAATT
*********************************************************************************************************......(((((...............))))).........................................************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M061
embryo
 M028
head
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR1106729
mixed whole adult body
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR1106730
embryo_16-30h
 SRR060684
140x9_0-2h_embryos_total
 SRR1106727
larvae
 SRR060669
160x9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
.........................................................................................................................................................................................................CTCAACGAGAGACTCGGTG............................... 19 3 20 11.35 227 90 2 17 20 13 0 0 3 28 22 4 0 0 0 15 0 0 5 0 3 2 2 1
.........................................................................................................................................................................................................CTCAACGAGAGACTCGGCG............................... 19 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACGACAAACTCGGCGCTGCC.......................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGAGAGACTCGGC................................ 18 2 2 2.00 4 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGAGAGACTCGGGG............................... 19 3 8 1.13 9 6 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTCACGCGTGCCCAAGCAACAGAAT. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGACAGACTCGGTGA.............................. 20 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACGACAAACTCGGCGCTGCCCTCACG.................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGCGTGCCCAAGC......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CACCAGCTCAACGACAAACTCGGCGC.............................. 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGGCGCTGCCCTCACGCGTGCC.............. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTAATTATTCTCAACTAATTCTGG.......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGC................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGACAAACTCGGCGCTGCC.......................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCC.......................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAATGCTGATTTTCCCAAAAA.............................................................. 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCTCACGCGTGCCCAAGCAACAGAA.. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCCCTCA...................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CTACAACAAAAACCAGCTCAAGGTCT.......................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGCGTGCCC............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACCTTTTTTTTCGTGTAATTATT......................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGACAGACTCGGT................................ 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGATTTGTATCTAAC................................................................................................................................... 15 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................ACCACAAAGACCAGCTCAAGG............................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......GGAATCAAGCAAAGAAAAAT................................................................................................................................................................................................................................ 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................CAACGACTACAACAATAACCTGCC.................................................................................................................................................................. 24 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGAGAGACTCGG................................. 17 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGAGATACTCGGTG............................... 19 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................TTTCAACTAAGTCTGGTT........................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCAACGAAAGACTCGGGG............................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCTATTTTTTCGTGTACT............................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTTTCCCTTTTGTTCGTTTCTTTTTACCTACGTAAATGTGCGTGAAAAGTATTTTGAAAAGCGTGTTGTTGATGTTGTTTTTGGTCGGGTTCCAGAGTTTAAATACTAAACATAGATTGGAGAAATTAAACTATACAATGGAAAAAAAAGCACATTAATAAGAGTTGATTAAGACCAAAAGGGTTTTTAATACGAACGTCGAGTTGCTGTTTGAGCCGCGACGGGAGTGCGCACGGGTTCGTTGTCTTAA
**************************************************************************......(((((...............))))).........................................********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060660
Argentina_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
............................................GAAAAGTATTTTGAAAAGCGTGTTGTT.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................ACGGGAGTGCGCACGCGTTCGT........ 22 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................GTGCGCACGGCCTCGGTGT..... 19 3 20 0.20 4 0 0 3 0 1
.....................................................................................TCGGATTCCAGAGATTAACT.................................................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:3607560-3607810 + dvi_14643 CAAAAGGGAAAA-CAAGCAAA---------------GAAAAATGGATGCATTTACACGCACTTTTCATAAAACTTTTCGCAC------------------------------------------------------AACAACTACAACAAAAACCAGCCCA---AGGTCTCAAATTTA---------------T--G-------AT---T-----T----------GTATCTAA-------------CCTC-TTTAATTTGATATGTT---------ACCTT------------------TTT----------TTTCGTG--------------TAATTAT------------------------------------T-------CTCAACT---------AATT----------C----------------------------T-------------GG---TTTTCCCAAAAATTATGCTTGCAGCTCAACGACAAACTCGGCGCTGCCCTCACGCGTGCC---CAAGCAACAGAATT
droMoj3 scaffold_6308:832609-832864 + CAAAGACAAAAAACA-CTCCA---------------TCGAAATGGAAGCCTTTACACGCACTTTTCACAAAACTTTTCGCACA-ACTT------------------------------------CCACA-----ACAACGAAAACCACAAAAACTAGCTCA---AGGTGTTT----------------------------------------------------------CTAACAATTGTGTATAACTCA-TT-CATTT-----ATTATTT-----TCTCA---------------TTGCAC----ACAAATTTTAACT--------------AAATTTTTATACTGAATTTGAA------------------------------------------------------------------------------------------------------ACATTT---------------TCTTGCAGCTCAACAACAAACTCGGCGCTGCCTTCCCGAGTGCC---CAAGCCACAGAACT
droGri2 scaffold_14853:10135525-10135809 + CAATATCGATCTGCA-TTCCGATTTGAATTTGGTTGACGTAATGGAGGCATTTACACGCACCTTTCATAAAACGTTTCGCACG----AGCAACACA---------AC---------AA------CAACA-----TCAACAAGAACAACAAAAACTTCGACA---AGGTGTACAATTTATGATTTTGTAGAAATA--AATTATGTAC---G-----CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAATTAGT---------TATGTCACCGTAACCAATACGCTGTATTCATAT-TTGC-AT---TATTTA---------------TTTTGCAGCTCAACGACAAACTCAGCACTGCCATCGCGAGTACC---CAAGCAACAGAATT
droWil2 scf2_1100000004909:6555721-6556017 - AA--------------------------------------TATGGAAGCCTTTAAGCGCACATTTCACAAAAGTTTTAGCACA-ACTAGAAATAGTAATAATATTAATACCACAACAACAACAACAA--CAAGAACAACCACAACAACAAATTCCTCAACA---AGGTCAAC---------------------CCAA-------AA---T-----C----------ATCCTTGC-------------CACA-ATTAAATTTTTTAG-------------TTGTTTTCCTTTTTTTTG---TAT----------T---ATT--------------TTGTTTC--AA-TAACTAGTCGAG------------------------------A-------------ATTATATTA----A----------------------------AGTTTCTTTATTCTG---AT---------------TTTTCCAGCTCAACAACAAACTCGGCGCTGCCATCACGAGTCCCATCCAAGCAACAGAACT
dp5 XL_group1a:5649891-5650101 + ----------------------------------------------------TAGGCGCACATTCCAAAACACTTTCCGCACACACCAAAA---------------------------------------------------AACAACAAAATTCCCTCCT------------------------------------------------ACTCCCC----C------TC-----CCAGTGTGGATAATTAT-TTTGATTTTA------AACT-----ATTTG------------------TTT----------TCA--TT--------------TAATTTG----ATTGA--------TTTGCAACTTTTC-------------------------------------------------------------------------TAT-TGGC-TTAT-GTC-AT---------------TATTTTAGCTCAACGACAAACTCGGCGCTGCCATCGCGAATCCC---CAAGCAACAGAACT
droPer2 scaffold_63:297403-297615 - --------------------------------------------------TTTAGGTGCACATTCCACAACACTTTCCGCACACACCAAAA---------------------------------------------------AACAACAAAATTCCCTCCT------------------------------------------------ACTCCCC----C------TC-----CCAGTGTGGATAATTAT-TTTGATTTTA------AACT-----ATTTG------------------TTT----------TCA--TT--------------TAATGTG----ATTGA--------TTTGCAACTTTTC-------------------------------------------------------------------------TAT-TGGC-TTAT-GTA-AT---------------TTTTTTAGCTCAACGACAAACTCGGCGCTGCCATCGCGAATCCC---CAAGCAACAGAACT
droAna3 scaffold_13417:1140894-1141160 + AGA-----------------------------------GAAATGGAGGCTTTTACACGCACTTTGCAAAAAACGTTTCGCAGC-ACTAGGA------------------------------CCACGA--CCAGCACTACCACCACTACCAATTCGTCCACCACTAGGTGATC---------------------CCAC-------TA---T-----C----------CTC-----CCATTGTGTATAACAGTTTTTGATTTTGA-----GTC------ACTTT---------------------TGATATGATTTTAAGTCTCTTTTTTTTCGTATAACCTT------TAA--------CCTGTGAC--------------------------------------------------------------------------------------CTT---GAT-AT---------------CCTTACAGCTCAACGACAAATTCGGCCCTGCCATCGCGAATCCC---CAAGCAACAGAACT
droBip1 scf7180000395529:232793-233067 - AG-------------------------------------AAATGGAGGCCTTTACACGCACTTTGCAAAAAACCTTTCGCAGC-ACCAGGA------------------------------CCACGA--CCAGCACCACCACAACCACCAATACCTCCACCACTAGGTGATC---------------------CCAC-------TACCTCCTCCCC----T------TC-----CCATTGTTTATAACTTT-TTTGATTTGAG------TC------ATTTG---------------------TGATATGATTTTA-GT----TTTTTATCATTTAATGT-----ATTAA--------CCTTTAACCTTTA----------------------A--------------------------------------------------AA------CTT---GCT-AT---------------CCTTGCAGCTCAACGACAAATTCGGCCCTGCCATCGCGAATCCC---CAAGCAACAGAACT
droKik1 scf7180000302696:444542-444814 + AGAGAAGCA---------------------------ACAGAATGGAGGCCTTTACGCGCACACTACACAAGACCTTTCGCACT-ACTAAAACTACGACTAGTAGCAC---------GA------CCACC-----ACCACCACCATGACTAACTCCTCAAAT---AGGTTCTG---------------------C--T------------------T----------GCTCCCAA-------------CACT-TTTGATTTTCATTTTT------------TT---------------------CGACACTATCTCT-GT---------------------------------------TTTGATA--------TTTCTTTGAATACC----CAGTTCTAA--------------------------------------------CCA-GCTCCTT---GGTTTC---------------TCTTGCAGCTCAACGACAAACTCGGCCCTGCCATCCCGAATCCC---CAAGCAACAGAACT
droFic1 scf7180000454073:1785965-1786213 + AG--------------------------------------AATGGAGGCTTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACAAGAA------------------------------CCACGACT-----ACAACTACCACCACAAAATCCTCCACC---AGGTTCCT---------------------CTAC-------AC---T-----G----------ATTCCTAA-------------CACT-TTTAATTTAAACTCTAATTT-----TTATG------------------TATTAATACGGTTTTA-GT----TTT--------------------------------TTTTCGGTTTTAA-------------------------------------------------------------------------CAC-TTTC-TTAA-CATCTT---------------TATTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT
droEle1 scf7180000490751:1176115-1176355 + AG--------------------------------------AATGGAGGCTTTCACGCGCACATTGCATAAAACCTTTCGTAGC-ACTAGAA------------------------------CCACGACT-----ACTACTACTACCACCAAATCCTCCACA---AGGTTCCC---------------------A--C-------AC---G-----C----------AACCCTAA-------------CACT-TTTGATTTAAATTTAAATCT-----TACTG------------------TTT----------T---------------------AATTTG----A--------TGACTTTTCAGTTTTAA-------------------------------------------------------------------------CAT-TGCC-AAAA-TTATTT---------------TGTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT
droRho1 scf7180000761121:132021-132247 - AG--------------------------------------AATGGAGGCTTTCACTCGCACTCTACATAAAACCTTTCGTAGC-ACTAGAA------------------------------CCACGACT-----ACTACCACTACCACCAAATCCTCTACC---AGGTTCCT---------------------C--C-------AC---G-----A----------ATCCCTAA-------------CACT-TTTGATTTCTTTTTAA-TTT-----GACCG------------------TTT----------TTCAGT-----------------------------------------------TTTAACATTTTT-------------------------------------------------------------------------C-ATAA-TTATTT---------------TATTGCAGCTCAACGACGAACTCGGCTCTCCCATCCCGAATCCC---AAAGCAACAGAACT
droBia1 scf7180000302069:1101473-1101716 - AG--------------------------------------AATGGAGGCCTTCACGCGCACTCTGCAAAATACCTTTCGTAGC-ACAAGAA------------------------------CCACGA-----------CCACTACTACCAACTCCTCCACC---AGGTTCCT---------------------C--C-------AC---A-----C----------ATCCCTAA-------------CCAC-TTTGATTTAAC--------CATTGGAATTG------------------TTT----------T---ATT--------------TTGGTTC--AGCTCCCTTGTGTAC------------------------------TCCTAGTTT-------------C----A----------------A-----------CGT-TCTCCAC---CCTTCC---------------TTTTGCAGCTCAACGACGAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT
droTak1 scf7180000415169:792863-793123 - AG--------------------------------------AATGGAGGCCTTCACGCGCACTCTGCAAAATACTTTTCGTAGC-ACCAAGAGAACC---------AA---------AA---CCACGA--CTACTACTACCACCACCACCAACTCCTCCACC---AGGTTCCG---------------------A--C----------------------------------CAG-------------CACT-CTTGATTTCACTTATAATCT-----TTCTG------------------TTT----------TTTGGTT--------------TAAGTTTTAAGTTTGTTTGGGAACTTTTTAATTTCAA-------------------------------------------------------------------------CAT-TATC-CC---GACTTT---------------TCTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT
droEug1 scf7180000409230:828867-829133 - AGACAAGCA---------------------------TCAGAATGGAGGCTTTTACGCGCACACTTCAAAAAACGTTTCGTAGC-ACTAGAA------------------------------CCACGA--CTACCACTACTACTACCACCAATTCCACCTCC---AGGTTCCT---------------------C-AC-------CA---G-----C----------ATCCCTAA-------------CAGT-TTTAATTTCAATTCGTATCT-----TTGTA------------------TAT----------GTTATTT--------------TCGGTTC------CATTTGAGTATTTCTTTGTTTTAA-------------------------------------------------------------------------CCT-TAGT-TT---TTAATT---------------TTTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT
dm3 chrX:19504196-19504463 + -----------------------------------------ATGGAGGCCTTTACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACTACAACAACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----C----------AACCCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCTTC----------------------------AA------------CACT----CAACTGCAATACTCATGTACAAT-A----------------------------TGTT----------------CGTCTCA----ACTTATTTGCAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCC---AAAGCAACAGAACT
droSim2 x:18397615-18397877 + dsi_4328 -----------------------------------------ATGGAGGCCTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACCACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----CAACCCTAACA---CCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCCTT------------------------------------A-------CT----TAGCTGCAATACTT----------A----------------------------TGTT----------------CGTCTTA----ACCTATTTGCAGCTCAACGACAAACTCGGCACTGCCATCCCGTATCCC---AAAGCAACAGAACT
droSec2 scaffold_8:1784907-1785169 + -----------------------------------------ATGGAGGCCTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACCACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----CAATCCTAACA---CCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCCTT------------------------------------A-------CT----TAACTGCAATACTT----------A----------------------------TGTT----------------CGTCTTA----ACCTATTTGCAGCTCAACGACAAACTCGGCACTGCCATCCCGTATCCC---AAAGCAACAGAACT
droYak3 X:11832626-11832880 - AG-----------------------------------CAGCATGGAGGCCTTCACGCGCACACTGCAAAACACCTTTCGTAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACTACCACAACCACAAACTCCTCCACC---AGGTTCCT---------------------T--C-------AC---G-----C----------ATCCCTAA-------------CACT-TTTGATTTTATTTGGAATCT-----ACTTG------------------TTT----------TTAAGTT--------------TCGTTTC------------------------------------A-------CT----CAATTGTAATACTT----------A----------------------------TGTG----------------CATTTCA----ACCTATTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---CAAGCAACAGAACT
droEre2 scaffold_4690:9732397-9732649 + AA-------------------------------------GCATGGAAGCCTTCACGCGCACACTGCAAAATACCTTTCGTAGC-ACTAGGACCACT---------AG---------AA------CCACT-----ACTACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------T--C-------AC---G-----C----------ATCCCTAA-------------CACT-TTTTATTTTATTTGGAAACT-----ATTTG------------------TTT----------TTAAGTT--------------TCGCTTT------------------------------------A-------TG----TAATTGTTATACTC----------A----------------------------TATT----------------AATTTCA----ACCTATTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAAAGGGAAAA-CAAGCAAA---------------GAAAAATGGATGCATTTACACGCACTTTTCATAAAACTTTTCGCAC------------------------------------------------------AACAACTACAACAAAAACCAGCCCA---AGGTCTCAAATTTA---------------T--G-------AT---T-----T----------GTATCTAA-------------CCTC-TTTAATTTGATATGTT---------ACCTT------------------TTT----------TTTCGTG--------------TAATTAT------------------------------------T-------CTCAACT---------AATT----------C----------------------------T-------------GG---TTTTCCCAAAAATTATGCTTGCAGCTCAACGACAAACTCGGCGCTGCCCTCACGCGTGCC---CAAGCAACAGAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCGCTGCC.............................2012.002020000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACGCGTGCC---CAAGCAACAGAAT.2511.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAACTCGGCGCTGCCCTCACG.......................2711.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGCGTGCC---CAAGC.........2911.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCTGCCCTCACGCGTGCC---..............2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................G--------------TAATTAT------------------------------------T-------CTCAACT---------AATT----------C----------------------------T-------------GG---.............................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGC......................1911.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAACTCGGCGCTGCC.............................1911.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCC.............................2211.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACGCGTGCC---CAAGCAACAGAA..2511.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCCCTCA.........................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCGCTGCCCTCACGCGTGCC---C.............2511.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................ACCTT------------------TTT----------TTTCGTG--------------TAATTAT------------------------------------T-------...........................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T--G-------AT---T-----T----------GTATCTAA-------------C....................................................................................................................................................................................................................................................................................................1530.331000000000000000000000000000000000000000000000000000000010000000
droMoj3
CAAAGACAAAAAACA-CTCCA---------------TCGAAATGGAAGCCTTTACACGCACTTTTCACAAAACTTTTCGCACA-ACTT------------------------------------CCACA-----ACAACGAAAACCACAAAAACTAGCTCA---AGGTGTTT----------------------------------------------------------CTAACAATTGTGTATAACTCA-TT-CATTT-----ATTATTT-----TCTCA---------------TTGCAC----ACAAATTTTAACT--------------AAATTTTTATACTGAATTTGAA------------------------------------------------------------------------------------------------------ACATTT---------------TCTTGCAGCTCAACAACAAACTCGGCGCTGCCTTCCCGAGTGCC---CAAGCCACAGAACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAACTCGGCGCTGCC.............................2211.001100000
droGri2
CAATATCGATCTGCA-TTCCGATTTGAATTTGGTTGACGTAATGGAGGCATTTACACGCACCTTTCATAAAACGTTTCGCACG----AGCAACACA---------AC---------AA------CAACA-----TCAACAAGAACAACAAAAACTTCGACA---AGGTGTACAATTTATGATTTTGTAGAAATA--AATTATGTAC---G-----CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAATTAGT---------TATGTCACCGTAACCAATACGCTGTATTCATAT-TTGC-AT---TATTTA---------------TTTTGCAGCTCAACGACAAACTCAGCACTGCCATCGCGAGTACC---CAAGCAACAGAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AA--------------------------------------TATGGAAGCCTTTAAGCGCACATTTCACAAAAGTTTTAGCACA-ACTAGAAATAGTAATAATATTAATACCACAACAACAACAACAA--CAAGAACAACCACAACAACAAATTCCTCAACA---AGGTCAAC---------------------CCAA-------AA---T-----C----------ATCCTTGC-------------CACA-ATTAAATTTTTTAG-------------TTGTTTTCCTTTTTTTTG---TAT----------T---ATT--------------TTGTTTC--AA-TAACTAGTCGAG------------------------------A-------------ATTATATTA----A----------------------------AGTTTCTTTATTCTG---AT---------------TTTTCCAGCTCAACAACAAACTCGGCGCTGCCATCACGAGTCCCATCCAAGCAACAGAACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACTCGGCGCTGCCATCACGA......................2511.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAGTCCCATCCAAGCAACAGAACT2811.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAACTCGGCGCTGCC.............................2211.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAACTCGGCGCTG...............................1811.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTG---AT---------------TTTTCCAGCTCAACAACA...........................................2711.00101000
dp5
----------------------------------------------------TAGGCGCACATTCCAAAACACTTTCCGCACACACCAAAA---------------------------------------------------AACAACAAAATTCCCTCCT------------------------------------------------ACTCCCC----C------TC-----CCAGTGTGGATAATTAT-TTTGATTTTA------AACT-----ATTTG------------------TTT----------TCA--TT--------------TAATTTG----ATTGA--------TTTGCAACTTTTC-------------------------------------------------------------------------TAT-TGGC-TTAT-GTC-AT---------------TATTTTAGCTCAACGACAAACTCGGCGCTGCCATCGCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCC.............................22113.001301120000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCCAT...........................2412.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACGACAAACTCGGCGCTGC..............................2312.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCGCTGCCATCGCG.......................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCCA............................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATCGCGAATCCC---CAAGC.........2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCGCTGCCA............................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCCATCGC........................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCCATCGCGAATC...................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGACAAACTCGGCGCTGCC.............................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAACTCGGCGCTGCCATC..........................2211.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGGCGCTGCCATCGCGAATCC..................2511.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACGACAAACTCGGCGCTGCC.............................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCGAATCCC---CAAGC.........1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCCATCGCGAAT....................2711.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCTGCCATCGCGAATCCC---CAAGC.........2811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGACAAACTCGGCGCTGCC.............................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCC.............................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAACTCGGCGCTGCC.............................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCT................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGACAAACTCGGCGCTGCCAT...........................2711.0010100000000
droPer2
--------------------------------------------------TTTAGGTGCACATTCCACAACACTTTCCGCACACACCAAAA---------------------------------------------------AACAACAAAATTCCCTCCT------------------------------------------------ACTCCCC----C------TC-----CCAGTGTGGATAATTAT-TTTGATTTTA------AACT-----ATTTG------------------TTT----------TCA--TT--------------TAATGTG----ATTGA--------TTTGCAACTTTTC-------------------------------------------------------------------------TAT-TGGC-TTAT-GTA-AT---------------TTTTTTAGCTCAACGACAAACTCGGCGCTGCCATCGCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCC.............................2212.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAACTCGGCGCTGCC.............................1912.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCT................................1912.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCGCTGCC.............................2012.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCGCTGCCATCGCGAATCCC---..............2412.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCTGCCATCGCGAAT....................1911.001000010
droAna3
AGA-----------------------------------GAAATGGAGGCTTTTACACGCACTTTGCAAAAAACGTTTCGCAGC-ACTAGGA------------------------------CCACGA--CCAGCACTACCACCACTACCAATTCGTCCACCACTAGGTGATC---------------------CCAC-------TA---T-----C----------CTC-----CCATTGTGTATAACAGTTTTTGATTTTGA-----GTC------ACTTT---------------------TGATATGATTTTAAGTCTCTTTTTTTTCGTATAACCTT------TAA--------CCTGTGAC--------------------------------------------------------------------------------------CTT---GAT-AT---------------CCTTACAGCTCAACGACAAATTCGGCCCTGCCATCGCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCGAATCCC---CAAGCAA.......2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGAATCCC---CAAGCAACA.....2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGACAAATTCGGCCC.................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCGAATCCC---CAAGCAACAGA...2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAATTCGGCCCTGCCA............................2211.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACGACAAATTCGGCCCTGCC.............................2411.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATTCGGCCCTGCCAT...........................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGCCATCGCGAATCCC---CAAGCA........2711.001100000
droBip1
AG-------------------------------------AAATGGAGGCCTTTACACGCACTTTGCAAAAAACCTTTCGCAGC-ACCAGGA------------------------------CCACGA--CCAGCACCACCACAACCACCAATACCTCCACCACTAGGTGATC---------------------CCAC-------TACCTCCTCCCC----T------TC-----CCATTGTTTATAACTTT-TTTGATTTGAG------TC------ATTTG---------------------TGATATGATTTTA-GT----TTTTTATCATTTAATGT-----ATTAA--------CCTTTAACCTTTA----------------------A--------------------------------------------------AA------CTT---GCT-AT---------------CCTTGCAGCTCAACGACAAATTCGGCCCTGCCATCGCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droKik1
AGAGAAGCA---------------------------ACAGAATGGAGGCCTTTACGCGCACACTACACAAGACCTTTCGCACT-ACTAAAACTACGACTAGTAGCAC---------GA------CCACC-----ACCACCACCATGACTAACTCCTCAAAT---AGGTTCTG---------------------C--T------------------T----------GCTCCCAA-------------CACT-TTTGATTTTCATTTTT------------TT---------------------CGACACTATCTCT-GT---------------------------------------TTTGATA--------TTTCTTTGAATACC----CAGTTCTAA--------------------------------------------CCA-GCTCCTT---GGTTTC---------------TCTTGCAGCTCAACGACAAACTCGGCCCTGCCATCCCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droFic1
AG--------------------------------------AATGGAGGCTTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACAAGAA------------------------------CCACGACT-----ACAACTACCACCACAAAATCCTCCACC---AGGTTCCT---------------------CTAC-------AC---T-----G----------ATTCCTAA-------------CACT-TTTAATTTAAACTCTAATTT-----TTATG------------------TATTAATACGGTTTTA-GT----TTT--------------------------------TTTTCGGTTTTAA-------------------------------------------------------------------------CAC-TTTC-TTAA-CATCTT---------------TATTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droEle1
AG--------------------------------------AATGGAGGCTTTCACGCGCACATTGCATAAAACCTTTCGTAGC-ACTAGAA------------------------------CCACGACT-----ACTACTACTACCACCAAATCCTCCACA---AGGTTCCC---------------------A--C-------AC---G-----C----------AACCCTAA-------------CACT-TTTGATTTAAATTTAAATCT-----TACTG------------------TTT----------T---------------------AATTTG----A--------TGACTTTTCAGTTTTAA-------------------------------------------------------------------------CAT-TGCC-AAAA-TTATTT---------------TGTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droRho1
AG--------------------------------------AATGGAGGCTTTCACTCGCACTCTACATAAAACCTTTCGTAGC-ACTAGAA------------------------------CCACGACT-----ACTACCACTACCACCAAATCCTCTACC---AGGTTCCT---------------------C--C-------AC---G-----A----------ATCCCTAA-------------CACT-TTTGATTTCTTTTTAA-TTT-----GACCG------------------TTT----------TTCAGT-----------------------------------------------TTTAACATTTTT-------------------------------------------------------------------------C-ATAA-TTATTT---------------TATTGCAGCTCAACGACGAACTCGGCTCTCCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droBia1
AG--------------------------------------AATGGAGGCCTTCACGCGCACTCTGCAAAATACCTTTCGTAGC-ACAAGAA------------------------------CCACGA-----------CCACTACTACCAACTCCTCCACC---AGGTTCCT---------------------C--C-------AC---A-----C----------ATCCCTAA-------------CCAC-TTTGATTTAAC--------CATTGGAATTG------------------TTT----------T---ATT--------------TTGGTTC--AGCTCCCTTGTGTAC------------------------------TCCTAGTTT-------------C----A----------------A-----------CGT-TCTCCAC---CCTTCC---------------TTTTGCAGCTCAACGACGAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droTak1
AG--------------------------------------AATGGAGGCCTTCACGCGCACTCTGCAAAATACTTTTCGTAGC-ACCAAGAGAACC---------AA---------AA---CCACGA--CTACTACTACCACCACCACCAACTCCTCCACC---AGGTTCCG---------------------A--C----------------------------------CAG-------------CACT-CTTGATTTCACTTATAATCT-----TTCTG------------------TTT----------TTTGGTT--------------TAAGTTTTAAGTTTGTTTGGGAACTTTTTAATTTCAA-------------------------------------------------------------------------CAT-TATC-CC---GACTTT---------------TCTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
droEug1
AGACAAGCA---------------------------TCAGAATGGAGGCTTTTACGCGCACACTTCAAAAAACGTTTCGTAGC-ACTAGAA------------------------------CCACGA--CTACCACTACTACTACCACCAATTCCACCTCC---AGGTTCCT---------------------C-AC-------CA---G-----C----------ATCCCTAA-------------CAGT-TTTAATTTCAATTCGTATCT-----TTGTA------------------TAT----------GTTATTT--------------TCGGTTC------CATTTGAGTATTTCTTTGTTTTAA-------------------------------------------------------------------------CCT-TAGT-TT---TTAATT---------------TTTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotal
No Reads
dm3
-----------------------------------------ATGGAGGCCTTTACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACTACAACAACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----C----------AACCCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCTTC----------------------------AA------------CACT----CAACTGCAATACTCATGTACAAT-A----------------------------TGTT----------------CGTCTCA----ACTTATTTGCAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCATCCCGAATCCC---AAAGCA........2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCGCTGCCAT...........................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCCCGAATCCC---AAAGCAACAGAAC.2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AACAACCACAAACTCCTCCAC............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAACTCGGCGCTGCCATCCCG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCTGCCATCCCGAATCCC---..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGACAAACTCGGCGCTGCCATCCC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATCCCGAATCCC---AAAGCAAC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCGCTGCCATCCCG.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGCGCTGCCATCCCGAATCCC---..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CCTTTACGCGCACACTGCAAAATACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTCGGCGCTGCCATCCCGAATC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CCTTTCGCAGC-ACTAGGACCACC---------AG---------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGGCGCTGCCATCCCGAAT....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGGCGCTGCCATCCC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------CGTCTCA----ACTTATTTGCAGC....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGCCATCCCGAATCCC---A.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCTGCCATCCCGAATCCC---AAAGCAACA.....3111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCTGCCATCCCGAAT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAATCCC---AAAGCA........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCCATCCC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C----------TTAAGTT--------------TCGCTTC----------------------------AA------------CACT----CAAC.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCTGCCATCCCGAATCC..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCGCTGCCATCCCGAA.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCGCTGCCATCCCGAATCC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCGCTGCCATCCCGAATC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTCGGCGCTGCCATCCCGA......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGACAAACTCGGCGCTGCCA............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCTGCCATCCCGAA.....................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGCAGCTCAACGACAAACTCGGCGC.................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCAACGACAAACTCGGCG..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCCCGAATCCC---AAAGCAACAGAAA.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCGCTGCC.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCGCTGCCATCCCGAAT....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C----------TTAAGTT--------------TCGCTTC----------------------------AA------------CACT----CAACTGCA.............................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-----------------------------------------ATGGAGGCCTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACCACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----CAACCCTAACA---CCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCCTT------------------------------------A-------CT----TAGCTGCAATACTT----------A----------------------------TGTT----------------CGTCTTA----ACCTATTTGCAGCTCAACGACAAACTCGGCACTGCCATCCCGTATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCAACGACAAACTCGGCACT................................2613.00300200000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AATACTT----------A----------------------------TGTT----------------CGTCTTA----ACCTATT..........................................................2613.00301000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCACTGCC.............................2212.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACGACAAACTCGGCACTGCC.............................2411.00101000000000000000
......................................................................................TAGGACCACC---------AG---------AA------CCACT-----ACC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
................................................................................AGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACC...................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
....................................................................................ACTAGGACCACC---------AG---------AA------CCAC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGACAAACTCGGCACTGCCATCCCG.......................2911.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAACTCGGCACTGCCATCC.........................2511.00100000000001000000
.......................................................................................................................................................................................................................................................................TTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------T.............................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGTATCCC---AAAGCAACAGAAC.2411.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCACTGCCATCCCG.......................2611.00100000000001000000
droSec2
-----------------------------------------ATGGAGGCCTTCACGCGCACACTGCAAAATACCTTTCGCAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACCACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------A--CCTCACCTAC---G-----CAATCCTAACA---CCTAA-------------CACC-TTTGGTTTTATTTCGAGTCT-----ACTTG------------------TTC----------TTAAGTT--------------TCGCCTT------------------------------------A-------CT----TAACTGCAATACTT----------A----------------------------TGTT----------------CGTCTTA----ACCTATTTGCAGCTCAACGACAAACTCGGCACTGCCATCCCGTATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAACTCGGCACTGCC.............................2111.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTCGGCACTGCCATCC.........................2211.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCACT................................1911.0011000
droYak3
AG-----------------------------------CAGCATGGAGGCCTTCACGCGCACACTGCAAAACACCTTTCGTAGC-ACTAGGACCACC---------AG---------AA------CCACT-----ACTACCACAACCACAAACTCCTCCACC---AGGTTCCT---------------------T--C-------AC---G-----C----------ATCCCTAA-------------CACT-TTTGATTTTATTTGGAATCT-----ACTTG------------------TTT----------TTAAGTT--------------TCGTTTC------------------------------------A-------CT----CAATTGTAATACTT----------A----------------------------TGTG----------------CATTTCA----ACCTATTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---CAAGCAACAGAACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTCTGCCATCCCGAATCCC---CAAG..........2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAAACTCGGCTCTGCC.............................2111.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCTCTGCCATCCCGAATCCC---C.............2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGGCTCTGCCATCCCG.......................2011.00101000000000
droEre2
AA-------------------------------------GCATGGAAGCCTTCACGCGCACACTGCAAAATACCTTTCGTAGC-ACTAGGACCACT---------AG---------AA------CCACT-----ACTACCACTACCACAAACTCCTCCACC---AGGTTCCT---------------------T--C-------AC---G-----C----------ATCCCTAA-------------CACT-TTTTATTTTATTTGGAAACT-----ATTTG------------------TTT----------TTAAGTT--------------TCGCTTT------------------------------------A-------TG----TAATTGTTATACTC----------A----------------------------TATT----------------AATTTCA----ACCTATTTGCAGCTCAACGACAAACTCGGCTCTGCCATCCCGAATCCC---AAAGCAACAGAACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGGCTCTGCCATCCCG.......................2112.0022000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGACAAACTCGGCTCTGCC.............................2311.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGACAAACTCGGCTCTGC..............................2411.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATCCCGAATCCC---AAAGCAAC......2411.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAACTCGGCTCTGCCATCCCGAA.....................2811.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCC---AAAGCAACAGAACT2011.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCCATCCCGAATCCC---AA............2211.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAAACTCGGCTCTGCC.............................2211.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCTCTGCCATCCCGA......................1911.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGCCATCCCGAATCCC---AAAGC.........2611.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGGCTCTGCCATCCCGAATCCC---..............2611.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCTGCCATCCCGAATCCC---A.............2411.0011000000

Generated: 05/16/2015 at 08:25 PM