ID:

dvi_14604

 Coordinate:

scaffold_13042:3491853-3492003 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.6 -19.1 -19.0

Flybase annnotation

exon [dvir_GLEANR_16387:1]; CDS [Dvir\GJ15960-cds]; intron [Dvir\GJ15960-in]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------####---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAAATCATTTAACTCAGCTAACAGAGCAGAGCCATCCATGTTAAAAATGGGTAAGTAGCTAGTCAAATACGATATACGTTTATGATATGCAATCCTCAATGAATGCAATAGCGTGCGTGTGTGTGTGTAGCAATGGCTTGGGGCAGGGGGTTTCTGTGAAAGGTGGTAAACGCAACAGGTGGGACACATAGTGTATATGAGGGAGAGAGAGAGAGAACGCCCTTCAAATTGTATTCTTCAGCCAAAAGGGT
*****************************************************************************************.............((((....))))((.(((.(((((......((.((((...(((((.....)))))...)))).))..)))))))).)).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060667
160_females_carcasses_total
 V047
embryo
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060683
160_testes_total
 V053
head
..........AACTCAGCTAACAGAGCAGAG............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............CTCAGCTAACAGAGCAGAGCC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TGTTAAAAATGGGTAAGTAG................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTATATGAGGGAGAGAGAGAGAGAA.................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACTCAGCTAACAGAGCAGA............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTTAACTCAGCTAACAGAGCA............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CATTTAACTCAGCTAACAGA.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTGTGTGTGTAGCAATGGCTTT............................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGGTGGTAAACGCAACAGGTG...................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTCTGTGAAAGGTGGTAAAC................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCATCCATGTTGAAAATGGGT....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AAATCATTTAACTCAGCTAAC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TAACTCAGCCAACAGAGCAGA............................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGAGCCATCCATGTTAAAAATGGA........................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAAGGTGGTAAACGCAACAG......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGGGGTCTTTTTGAAAGGTGGT.................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGAGAACGCCCTTCAAATTG.................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CAATCCTCAATGAATGCAATA............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATACGTTTATGTTAAGCGATC............................................................................................................................................................. 21 3 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGAGAGAGAGAGAACGCCCTT........................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................ATGGGTAAGTAGCTAGTCAAA........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CAGAGCCATCCATGTTAAAAATGG......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGGGGTTTGTGTGAAGGGTGGT.................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TTAAAAATGGGTAAGTGGC................................................................................................................................................................................................ 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................AAAAATGGGGATGTAGCT............................................................................................................................................................................................... 18 2 10 0.30 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0
...................................................................................................................................................GGGATTGTGTGAAAGATGGTA................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................GGTGGGAAACAGAGTGTA........................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TATAGGAGGGAGAGAGAGAGA..................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................TGGTATAAGCAACAAGTGGGA................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGTGTATTTGAGGTAGAG............................................ 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GCAATGGCTGGGGGCGGGG....................................................................................................... 19 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGTTCGAATTGTAGTCT.............. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
........................AGCAGAGCCATGCATGTCTA............................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................GGGGCAGGGAGGTTCTG............................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................TGAGGGAGAGAGAGAGAG.................................... 18 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTTAGTAAATTGAGTCGATTGTCTCGTCTCGGTAGGTACAATTTTTACCCATTCATCGATCAGTTTATGCTATATGCAAATACTATACGTTAGGAGTTACTTACGTTATCGCACGCACACACACACATCGTTACCGAACCCCGTCCCCCAAAGACACTTTCCACCATTTGCGTTGTCCACCCTGTGTATCACATATACTCCCTCTCTCTCTCTCTTGCGGGAAGTTTAACATAAGAAGTCGGTTTTCCCA
**********************************************************************.............((((....))))((.(((.(((((......((.((((...(((((.....)))))...)))).))..)))))))).)).***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR1106720
embryo_8-10h
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR1106713
embryo_0-2h
 SRR1106714
embryo_2-4h
 SRR1106717
embryo_6-8h
 SRR1106719
embryo_8-10h
 SRR1106718
embryo_6-8h
 SRR060688
160_ovaries_total
 SRR1106715
embryo_4-6h
 SRR1106722
embryo_10-12h
 SRR1106724
embryo_12-14h
 SRR1106725
embryo_14-16h
 SRR1106727
larvae
 SRR1106729
mixed whole adult body
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 M028
head
.......................................................ATCCATCAGTTTATG..................................................................................................................................................................................... 15 1 4 5.00 20 0 0 0 0 0 4 0 0 0 3 2 2 2 1 0 1 1 1 1 1 1 0 0 0 0
...................................................................................CTATACGTTAGGAGTTACTTA................................................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TGCAAATGCTATACGTTAGGAGTTA....................................................................................................................................................... 25 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGTTATCGCACGCACACACA............................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATACTCCCTCTCTCTCTCTCTTG................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAGGTACAATTTTTACCCATTCAT.................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTCTTGCGGGAAGTTTAACA................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTTGTCCACCCTGTGTAT............................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TGAGTCGATTGTCTCGTCTCG........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTCCACCATTTGCGTTGTCC........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............AGTCGATTGTCTCGTCTCGGTAG....................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGTATCACATATACTCCCTCTCTCTCTC...................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TGAGTCGATTGTCTCGTCTCGGTAG....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGATTGTCTCGTCTCGGTAGG...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........AATTGAGTCGATTGTCTCGTC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGTCTCGGTAGGTACAATTTT............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTTTTACCCATTCATCGATCAGT.......................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTCTCGTCTCGGTAGGTACAAT................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CATTCATCGATCAGTTTGTGC.................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATGCTATACGTTAGGAGTTACTTA................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAATGCTATACGTTAGGAGTTA....................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACGTTATCGCACGCACACACA............................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAGACACTTTCCACCATTTGC............................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGTCCACCCTGTGTATCA........................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCTCTCTTGCGGGAAGTTTAACATAA................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAATGCTATACGTTAGGAGTTAC...................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTCCACCATTTGCGTTGTCCACCCTG.................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAGGTACAATTTTTACCCATTCATC................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTAGGAGTTACTTACGTTA.............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTGTATCACATATACTCCCT............................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TATCGCACGCACACACACACA........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTCTTGCGGGAAGTTTAACATAAG............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGCTATATGCAAATGCTATA................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CGTTAGGAGTTACTTACGTTATCGC.......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTTACGTTATCGCACGCACACACACA............................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCACATATACTCCCTCTCTCTC........................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTACGTTATCGCACGCACACA................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTTGTCCACCCTGTGTATCA........................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGGAAGTTTAACATAAGAAG............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTGAGTCGATTGTCTCGTC.............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTCTTGCGGGAAGTTTAACGTG................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GTACAATTTTTACCCATTCATCGA............................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GCTCTTTCGGGAAGTTTGACAT.................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTCTTGCGGGAAGTTTGACGT.................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACATTCTACCAGTTGCGTTG........................................................................... 20 3 7 0.29 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTCCACCATTTTCGT............................................................................. 15 1 13 0.23 3 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGTCCCCCACAGACCCTTTT......................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTGAATTGAGTAGATTGT.................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................TTTAACATAAGAGGTTGGT....... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................TCGTGTCGTCTCGGCAGGTA.................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................TTCCAAAATTGGCGTTGTCC........................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................TCGGTCAGTTTAGGCTATT................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................TTCTCGCACGCACACACACAC............................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:3491803-3492053 + dvi_14604 CAAA-TCATTTAACTCAGCTAACAGAGCAGAGCCA------------------------TCCATGTTAAAAATGGGTAAGTAG-CTAGTCAAATACGATATACGTTTATGATATGC--A-------------------------A-TCCTCAATGAATGCAATAGCGTGCGTGTGTGTGTGTAGCAATGGCTTG-GGGCAGGGGGTTTCTGTGAAA---------GGTGGTAAACGCAACAGGTGG-GACACAT-----AGTGT-----ATATGAGGGAGAGAGAGAGAGA--------------------------------------------------------------ACGCCCTTCAAATTGTATTCTTCAGCCAAAAGGGT
droMoj3 scaffold_6308:718438-718759 + CAAA-T----------------------------AACAGTTAGCACACACACACTA---CGAAAAATAAACATGGGTAAGTTCATTAACGATTTACGATTTACGCATACGATATGC------------------------ACGAA-AGCTCAATGAATGCAACAGTTAGCGATTGGACGGGGA--------GAGTTGGGGAACGGTGAATGTGTTTGGTGTTGGTGTTGGGAAACGCAACAGGTGG-CGCGCAATATGCCGTGTATCAAGAGTGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGAGGACGACACAGAGATACGGCGACGAAGAGCGCGCGCAAAAGAATGCCCTTCAAATTGTGTTCTTTAGGTAAAAGGGT
droGri2 scaffold_15203:2674777-2675075 + CAAAAGCAACTGCCTCAGCTAACAACACAGAGTTAACAGACGGAAAACACACAACAGCAGCCATGTTAAAAGTCGGTAAGTAA-CAATTTTTTTGTAATGCACTCCTGTAATCACTACACATTTACATACATACAAATGCATGCACATATCGATGTATG------------------TATGTA-CATTACTGAG-TGACGAATGGAAAATGTGTATGGC---------GGACTGGGTCACTGGGGACATTGCAC-----TGAGA-----GAACGAGGGAGTGAGTGAG------------------------G-----------------------AGAGCGCTCGCC-ACGATCGCCCTTCAAATTGGGTTATTTAGCTG-AAGGGT
droWil2 scf2_1100000004590:3745103-3745150 - G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------------------------------------------CAGAG-----AGTGT-----GTGTGAGAGAGAGAGAGAGAGAGAG------------------------------------------------------------------------------------AGAGAAAGAG
droPer2 scaffold_34:71539-71594 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCAAATGGAACAAATGG-AAAACAA-----GAATC-----GCACAAAGGAGAGAGGGAGAGA-------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAA-TCATTTAACTCAGCTAACAGAGCAGAGCCA------------------------TCCATGTTAAAAATGGGTAAGTAG-CTAGTCAAATACGATATACGTTTATGATATGC--A-------------------------A-TCCTCAATGAATGCAATAGCGTGCGTGTGTGTGTGTAGCAATGGCTTG-GGGCAGGGGGTTTCTGTGAAA---------GGTGGTAAACGCAACAGGTGG-GACACAT-----AGTGT-----ATATGAGGGAGAGAGAGAGAGA--------------------------------------------------------------ACGCCCTTCAAATTGTATTCTTCAGCCAAAAGGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........AACTCAGCTAACAGAGCAGAG....................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.............CTCAGCTAACAGAGCAGAGCC..................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................TGTTAAAAATGGGTAAGTAG-................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GT-----ATATGAGGGAGAGAGAGAGAGA--------------------------------------------------------------A..................................2511.001000000000000000000000000000000000000000000000000000000000000010
............ACTCAGCTAACAGAGCAGA.....................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
........TTTAACTCAGCTAACAGAGCA.......................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......CATTTAACTCAGCTAACAGA..........................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GTGTGTGTGTAGCAATGGCTTT-.................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................A---------GGTGGTAAACGCAACAGGTG...............................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................TTCTGTGAAA---------GGTGGTAAAC.........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.AAA-TCATTTAACTCAGCTAAC.............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
............................AGAGCCA------------------------TCCATGTTAAAAATGGA........................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GAAA---------GGTGGTAAACGCAACAG..................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AGAGA--------------------------------------------------------------ACGCCCTTCAAATTG....................2011.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................C--A-------------------------A-TCCTCAATGAATGCAATA................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................AGAGAGAGAGAGA--------------------------------------------------------------ACGCCCTT...........................2111.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................ATGGGTAAGTAG-CTAGTCAAA.......................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................CAGAGCCA------------------------TCCATGTTAAAAATGG.........................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGAGGGAGAGAGAGAGAG..................................................................................................18160.061000000000000000000000000000000000000000000000000000000000000010
droMoj3
CAAA-T----------------------------AACAGTTAGCACACACACACTA---CGAAAAATAAACATGGGTAAGTTCATTAACGATTTACGATTTACGCATACGATATGC------------------------ACGAA-AGCTCAATGAATGCAACAGTTAGCGATTGGACGGGGA--------GAGTTGGGGAACGGTGAATGTGTTTGGTGTTGGTGTTGGGAAACGCAACAGGTGG-CGCGCAATATGCCGTGTATCAAGAGTGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGAGGACGACACAGAGATACGGCGACGAAGAGCGCGCGCAAAAGAATGCCCTTCAAATTGTGTTCTTTAGGTAAAAGGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
CAAA-T----------------------------AACAGTTAGCACACACACA...............................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................ACACTA---CGAAAAATAAACATGGA........................................................................................................................................................................................................................................................................................................................2311.001100000
..................................AACAGTTAGCACACACACA...............................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................................................TGAGTGAGGACGACACAGAGATAC............................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................AATGCCCTTCAAATTGTGTTCT..............2211.001100000
droGri2
CAAAAGCAACTGCCTCAGCTAACAACACAGAGTTAACAGACGGAAAACACACAACAGCAGCCATGTTAAAAGTCGGTAAGTAA-CAATTTTTTTGTAATGCACTCCTGTAATCACTACACATTTACATACATACAAATGCATGCACATATCGATGTATG------------------TATGTA-CATTACTGAG-TGACGAATGGAAAATGTGTATGGC---------GGACTGGGTCACTGGGGACATTGCAC-----TGAGA-----GAACGAGGGAGTGAGTGAG------------------------G-----------------------AGAGCGCTCGCC-ACGATCGCCCTTCAAATTGGGTTATTTAGCTG-AAGGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------------------------------------------CAGAG-----AGTGT-----GTGTGAGAGAGAGAGAGAGAGAGAG------------------------------------------------------------------------------------AGAGAAAGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droPer2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCAAATGGAACAAATGG-AAAACAA-----GAATC-----GCACAAAGGAGAGAGGGAGAGA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/19/2015 at 06:40 PM