ID:

dvi_14589

 Coordinate:

scaffold_13042:3419239-3419389 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.7 -28.7 -28.7

Flybase annnotation

CDS [Dvir\GJ15954-cds]; exon [dvir_GLEANR_16381:1]; intron [Dvir\GJ15954-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scaffold_12822:511901-511919 +
  2. scaffold_12822:3672583-3672601 +
  3. scaffold_12823:1461697-1461715 +
  4. scaffold_12875:4376043-4376061 +
  5. scaffold_12875:4914531-4914549 +
  6. scaffold_12875:5836003-5836021 +
  7. scaffold_12875:16082946-16082964 +
  8. scaffold_12875:16448062-16448080 +
  9. scaffold_12875:17141187-17141205 +
  10. scaffold_12875:20074293-20074311 +
  11. scaffold_12932:561202-561220 +
  12. scaffold_12963:16560501-16560519 +
  13. scaffold_12970:11276193-11276211 +
  14. scaffold_13042:2884714-2884732 +
  15. dvi_14589  scaffold_13042:3419253-3419271 +
  16. scaffold_13042:3551831-3551849 +
  17. scaffold_13047:17748549-17748567 +
  18. scaffold_13049:1150514-1150532 +
  19. scaffold_13049:5913005-5913023 +
  20. scaffold_13049:21187130-21187148 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGTCTACAACAACAAGAACAGCATTGGCGCCTTCTTTCAGACCTGCAAGGTAAGCAGAAAAGAAGAAGCAGCAGCAGCAGCAGCAAATTTCTATTCACCATTCTTAAAACACTTGAAAACAGTTATTGCCCAATGTTGTTGCTGGTTCAGTTAACGGTTCGAACCAACATTCGGAGTTTCATAAGTCAGATTTGTCGCAACTAGACCCAAACTGACTTGGTTCGGTTCAGGGCTTGCATACAATTGGCAT
**************************************************....(((((......(((.(((((((((((...((((....((.((((................))))...))...))))....))))))))))).))).........((((((......))))))...............))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 M028
head
 SRR060671
9x160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060681
Argx9_testes_total
 V053
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 M061
embryo
 GSM1528803
follicle cells		 SRR060678
9x140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 V047
embryo
 SRR060677
Argx9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060673
9_ovaries_total
 SRR060683
160_testes_total
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGC............. 18 2 2 10411.50 20823 7738 3143 1677 1238 961 1341 1134 872 542 279 288 276 222 161 166 102 137 107 76 69 59 19 49 46 33 29 17 8 2 6 6 5 3 4 4 2 1 1
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGC............. 19 2 1 1634.00 1634 272 386 142 173 81 28 118 49 70 59 44 26 43 34 7 36 16 3 1 1 1 15 0 1 7 6 4 2 4 2 2 0 1 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCG............ 19 3 16 210.13 3362 24 178 56 17 2798 4 26 45 17 15 9 13 9 13 36 27 3 4 28 1 8 0 8 16 0 0 1 0 0 1 1 0 0 4 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGCG............ 20 3 4 85.00 340 4 46 11 9 157 1 7 15 7 24 8 2 6 8 6 10 3 1 3 0 2 2 0 3 1 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTG.............. 18 2 8 38.50 308 2 44 32 92 3 0 29 19 12 18 15 1 22 4 0 11 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGTTCGATTCCGGGCTTGC............. 20 3 5 37.60 188 87 14 11 5 4 19 4 9 2 3 6 1 3 8 0 3 1 2 0 0 0 1 0 0 2 0 1 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTCGATTCCGGGCTTGC............. 20 2 1 12.00 12 0 1 0 1 0 0 2 1 0 0 0 0 0 4 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGTTCCGGGCTTGC............. 18 1 1 12.00 12 5 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCAGGGCTTGC............. 18 1 1 9.00 9 4 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTCGATTCCGGGCTTGCG............ 21 3 1 8.00 8 0 0 0 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGTTTCCGGGCTTGC............. 18 2 5 6.20 31 1 2 2 3 7 0 1 0 4 3 0 2 1 0 2 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCTGGTTCGATTCCGGGCTTGC............. 22 3 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCAC........... 20 3 6 3.67 22 12 0 0 0 4 4 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCA............ 19 2 2 3.50 7 1 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTGGTTCGATTCCGGGCTTGC............. 21 3 3 3.33 10 0 2 1 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCTGGGCTTGC............. 18 2 6 2.17 13 5 2 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGCGT........... 21 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCAGGGCTTGC............. 19 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGTTCCGGGCTTGCG............ 19 2 2 2.00 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGCTTCCGGGCTTGC............. 18 2 4 1.75 7 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGTTCGATTCCGGGCTTGC............. 19 3 8 1.25 10 2 2 0 1 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTTC............. 19 3 20 1.05 21 0 7 2 0 0 0 5 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCGTA.......... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCACAC......... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCAGGGCTTGCG............ 19 2 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGCTTCCGGGCTTGC............. 19 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTCGATTCCGGGCTTG.............. 19 2 5 0.80 4 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTGGATTCCGGGCTTGC............. 18 3 20 0.55 11 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCC............ 19 3 11 0.55 6 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCTGGGCTTGC............. 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGTTCGATTCCGGGCTTGCA............ 21 3 4 0.50 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGATTCCGGGCTTGCGTAC......... 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATCCCGGGCTTGC............. 18 3 20 0.45 9 1 1 0 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGT............. 19 3 20 0.35 7 0 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGCAC........... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGCTTCAGGGCGTGC............. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTGCT............ 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGGTTCCGGGCTTGCGCAC......... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GATCGATTCCGGGCTTGC............. 18 3 20 0.30 6 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCGGGGCTTGC............. 18 2 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGTTCGATTCAGGGCTTGCG............ 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCGT........... 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTCGATTCCGGGCTT............... 18 2 13 0.23 3 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCGTGC............. 19 3 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGTTCCGGGCTTGCCC........... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGAAGAAAAGAAGAAGCAG................................................................................................................................................................................... 20 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCCT........... 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTGCT............ 19 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGTTCCGCGCTTGC............. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGTTCGATTCCGGGCTTGC............. 19 3 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCTGGTTCGGTTCCGGGC................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGTTTCCGGGCTTG.............. 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGATTCCGGGCTTGCA............ 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGGTTCCGGGCTTGCGC........... 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCCATTCCGGGCTTGC............. 19 3 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGTTCCCGGCTTGC............. 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCTGGCTTGC............. 19 3 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTTC............. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATTCCGGGCTTGCATACCA....... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCAGGCTTGC............. 19 3 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGCTCGATTCCGGGCTTGC............. 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGATTCCGGGCTTACA............ 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGACTCCGGGCTTGC............. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATGCCGGGCTTGC............. 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GATTCGATTCCGGGCTTGC............. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTGGATTCCGGGCTTGC............. 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACCCTTGAAACCAGTGATT........................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCATGC............. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGCTTCCGGGCTTGCGT........... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GATTCCGGGCTTGCGTAC......... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGATTCCGGGCTTGCGTA.......... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AACGTTGTTGCTGGTTCT..................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCCTGGTTCGGTTCCGGGC................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAAGCAGCAGCAGCAGCA........................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AGTTAGAGGTTCGAACGAA................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTCGATTCCGGGCTTAC............. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACAGATGTTGTTGTTCTTGTCGTAACCGCGGAAGAAAGTCTGGACGTTCCATTCGTCTTTTCTTCTTCGTCGTCGTCGTCGTCGTTTAAAGATAAGTGGTAAGAATTTTGTGAACTTTTGTCAATAACGGGTTACAACAACGACCAAGTCAATTGCCAAGCTTGGTTGTAAGCCTCAAAGTATTCAGTCTAAACAGCGTTGATCTGGGTTTGACTGAACCAAGCCAAGTCCCGAACGTATGTTAACCGTA
**************************************************....(((((......(((.(((((((((((...((((....((.((((................))))...))...))))....))))))))))).))).........((((((......))))))...............))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060668
160x9_males_carcasses_total
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 V053
head
 GSM1528803
follicle cells		 SRR060682
9x140_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
.................................................................................................................................................................................................AAAGCGGTGATATGGGTTT....................................... 19 3 20 3.75 75 72 0 0 0 0 0 3 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGCGGGGATATGGGTTTGACT................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AACCGCGGAAGAAAGAATGG............................................................................................................................................................................................................... 20 2 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGCGGGGATATGGGTTTGA..................................... 19 3 14 0.79 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAGAGTATTCTGTCTATAC........................................................ 20 3 5 0.60 3 0 0 0 0 0 2 0 0 0 0 1 0 0 0
........................AACCGCGGAAGAAAGAATG................................................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................GCGGGAGAAAGTCAGGGCGTT.......................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAAGCGGGGATCTGGGTTT....................................... 19 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGAAAGCGTTGATATGGGTTT....................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................TTCTTCTTGGTCGTCGTCGTCGTCGTT.................................................................................................................................................................... 27 1 8 0.25 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................CAATTGCCAAGCTTAGTTC.................................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TGTAAGCTTCAAAGCATGC................................................................. 19 3 18 0.22 4 0 1 0 0 0 0 0 0 0 0 0 1 1 1
............................................................................................AGAAGTGAGAAGAATTTTGTG.......................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CGTTTAAAGTTTAGTGGTA..................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGCGGTGATATGGGTTTAA..................................... 19 3 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCTTCTTGGTCGGCGTCGTCGTCGTT.................................................................................................................................................................... 27 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TGGGTTTGACTGGCCCTAG........................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:3419189-3419439 + dvi_14589 ATGTCTA-CAAC------AACAAGAA-----------------------------------------CAGCATTG---GC------------G--CCTTCTTTCAGACCTGCAAGG---------TAAGCAGAA--------------------------------------------------A------------AGAAGAA------------------------GCAGCAGCAGCAGCAGCAAAT------TTCTAT---------------TCA-----------------------------------------------------------------------------------------CCATTCTTAAAA--------------------------------------------------CACTTGAAAACA------GT---------TATTGCCCAATGTTG-TTGCTGGTTCAGTTAA---------------------------------------CGG--TTCGAACCAACATTCGGAGTTTCATAAGTCAGATT--TGTCGCAACTAGACCCAAACTGACTTGGTTCGGTTCAGGGCTTGCATACAATTGGCA-------T
droMoj3 scaffold_6496:6138009-6138136 - CA-ACAA-CAAC------AACAAC--------------------------------------------AGCAG---------CAACA--------AGAGCT---------------------------------------------GAA---------------------------------------------------------------------------------------------------------------AGGTTTTAAGCCAGCGACAGCTGAAAAAAA----------TTT----GCATAT--------GCAAA----------------------------------------------------TT-----------------------GAT----------TTC-T--CTA----CAC--GAACACA------GT---------TGTTGC--------------------T-----GT----------------------------AGT---------------------------------------------TG-------------------------------------------------------TTGTTGTAGTT
droGri2 scaffold_15245:12788784-12788999 - ACAACAA-CAAC------AACAAAG------TCGCAGCGAAAGTGCTAAAA----AATCAACAGCAGCAGCAGCA---GCAGC-----------------------AACA------ACAACAAAAACAACAGAA-------------ACA------A---------------------------AAGCA---------------------------------------GCAGCAGCAGCAG------CCCAAAACTTCAAT---------------AAG-----------------------------------------------------------------------------------------CAACAGCAACAACAATTTAAAATT--------------------------------------------------------G----------CACAGCCCACAAAAT-TTGCATGTTCT-----GC----------------------------AAA------AGG---GCTAAAAAACATACAAAACT-------------TA-------------------------------------------------------TTAAACCAAGT
droWil2 scf2_1100000004902:6978164-6978307 - ATGTCCCGCCACAA---CAACAACAG-----------------------------------------CAGCAGCA---GCAAC-----------------------AACA------ACAAC-------------AGCAGCAACAATCCCAACATCAT---------------------------CATCCAC------------A------------------------GCAGCAACAGCAACAACAACC------TCCGCC---------------GCA-----------------------------------------------------------------------------------------ACATTCCA----------------------------------------------------------TGGAGGCA------CA---------TTATGC-----------------------------------------------------CCAAGC---------------------------------------------TG-------------------------------------------------------CTGC-----TG
dp5 XL_group1a:8311051-8311208 + GTGGCAA-CATC------CACAGCAG-----------------------------------------CAGCAGCA---GCAGCAACA--------ACAACA---------------------------------------------CCCAACACCAA---------------------------CACCAGCAGCAGCAGCGGAA---------------------------GCAGCAGCAGCAGCAAGG------------------------------------------------------------------------------------------------------TTGACGATGAGTACACACCATTC---------------------------------------------------------------------------------TGGTGGCTGCCGAATATTGGCTGGCGGCTCGATCGT---------------------------------------CAG--GTCG-------------------------------------------------------------------------------------------------A
droPer2 scaffold_15:684041-684195 + ACATCCA-CAGC------AGCAGCAG-----------------------------------------C---A---G------CAACA--------ACAACA---------------------------------------------CCCAACACCAA---------------------------CACCAGCAGCAGCAGCGGAAGCA---------------------GCAGCAGCAGCAGCAGCAAGG------------------------------------------------------------------------------------------------------ATGACGATGAGTATACACCATTC---------------------------------------------------------------------------------TGGTGGCTGCCGAATATTGGCTGGCGGCTCGATCGT---------------------------------------CAG--GTCG-------------------------------------------------------------------------------------------------A
droAna3 scaffold_13340:6821883-6821988 + CCATCAA-CAAC------ATCAGC-----------------------------------------------A---A---------CACCACCAC--------CACCAACA----------------------------------------------T---------------------------CAGCAACATCAGCAG------------------------AGTCAGCAACTTCAGCAGCAACAGCA------CGCCAACT-------T-----TCT-----------------------------------------------------------------------------------------CCACATCCAACA-----------------------GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droBip1 scf7180000394718:52612-52732 + ACAGCAA-CAAC------ATCAGGAG-----------------------------------------CAGCAGCG---GC---------------------------------------------------------------------------------------------------------------------AACG------------GCAA---CA---------ACATCAGCAGCAATAAT----------------------------------------------------------------------------------------------------------------------------------------TAGAAATTAGTCCTCGGCAAGTTTCGTTTTTATTTTTATATATAAACACTTGAATTTA------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----TG
droKik1 scf7180000302510:466613-466791 - CTACCAG-CAGC------AACAAGAT-----------------------------GCCCAG------CAGCAACAG------CAGCA--------ACTCCACATGGAGCA----------------------------------------------A---------------------------CAGCAACAACAACAACAACAGCAGCAGCAGCAACAACAATATGTGCAACATCAGCAG------CC------CGCCAT---------------TCA-----------------------------------------------------------------------------------------GCATACGCAGCA-----------------------GAT----------TT--A--CTA----CACCTCAGAGCA------AG---------TAC-----------------------T-----AC----------------------------AGC------CCAA-----------------------------------TG-------------------------------------------------------CCAT-----TG
droFic1 scf7180000453929:853642-853809 + ATGCCCAGCAGCAG---CAACAGC--------------------------------------------AGCAGCAGCAA------CA--------ACTGCACTTAGAGCA------GCAAC-------------AG---------------------------CA---------------GCAGCA------------------------GCAACAACAACATTATGTGCAGCACCAGCAGCAGCAACC------CGCCAT---------------TCA-----------------------------------------------------------------------------------------GCATACACAGCA-----------------------GAT----------TT--A--CTA----CACTTCAGAGCA------AG---------TTC-----------------------T-----GC----------------------------AAC------CAAA-----------------------------------TG-------------------------------------------------------CCAT-----TG
droEle1 scf7180000491027:71324-71569 + ACATCTATTGGCAACAGCAACAGC-----------------------------------------------A---A------CAACACTGGGGT--------ACGCTGAT------GCAAC-------------GG---------------------------TG---------------GCCACGGCAACAACAACAT------------------------TGCTAGCGGCCGCAGCTGCAGCCACG------CGGCAAGGTTTGATTCCCCCCTCAACAAAAAAAAAAAACGAAAAACTTGAGAGCAGAT--------CTAGT----------------------------------------------------TT---------------------------------CGATTCTGATCTGCGTTATCT------CAATTATAGTTGTTGTTGTTGCTGCCCAAAACTCG-AAACAACACTAATGT---------------------------------------CATTTGCCA-------------------------------------------------------------------------------------------------G
droRho1 scf7180000779204:87972-88121 - ACATCAG-CAGC------AGCAACAT-----------------------------------------CAACAGCAGCAG------CA--------------------GCA----------------------------------------------TCAA------------------------CAGCAGCAGCAGCAG---CAGCATCAGCAGCAGCAACAA---------CATCAGCAG----------------------------------------------------------------------------------------------------------------------------------CAGCAACA----------------------------------------------------------------------------------------------------------------ACATCAAAGCATTGGAATGTTTGATGCCAATGAAGTTAACGA--TGTCATCCAGAAT---------------------------------------------------------------------------------------CC
droBia1 scf7180000302193:4304902-4305033 - ATGCCCAGCAGC------AACAGC-----------------------------------------------A---G------CAGCA--------ATTGCACCTGGAGCA----------------------------------------------A---------------------------CAGCAGCAGCAGCAG------------------------TATGTCCAGCACCAGCAGCAGCAACC------CGCCAT---------------CCA-----------------------------------------------------------------------------------------GCACACACAGCA-----------------------GAT----------TT--A--CTA----CACCTCCGAGCA------GG---------TGC-----------------------T-----GC------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415809:695732-695877 - TCCCCAG-CAGC------AGCAGC-----------------------------------------------A---A------CAGCA--------ATTGCACCTGGAGCA----------------------------------------------A---------------------------CAGCAACAGCAACAA------------------------TATGTGCAACACCAGCAGCAACAACC------CGCCAT---------------CCA-----------------------------------------------------------------------------------------GCACACGCAACA-----------------------GAT----------TT--A--CTA----CACTTCCGAGCA------GG---------TTC-----------------------T-----GC----------------------------AGC------CCAA-----------------------------------TG-------------------------------------------------------CCAT-----TG
droEug1 scf7180000409110:929206-929381 + GCAGCAA-CAAC------AACAATCGATGGGTGGTGGTGATCCTGGTGATA----ATG---------C---A---A---------CGTCGACGT--------CAGCGGCA----------------------------------------------G---------------------------CAGCAGCA------------------GCAGCAG---CAA---------CATTGACGG----GATC------CTCCAT---------------TTA----------------------TG--GTGCAGACGATGCAGGTGC-GGGTGTTGCTAGTGGC------------------------------------------------------------------------------------------------------------------------------GGTGTTG-GTGTTGGTGGTATTAG---------------------------------------CAG--TGCG-------------------------------------------------------------------------------------------------A
dm3 chr2L:16559675-16559842 + AG--CAG-CAGC------AGCAGC--------------------------------------------AGCAGCAGCTT------CA--------------------TCA----------------------------------------------T------------------------------CACCATCAGCAA------------------------CATGGGCAGCATCAGCA--------------------ACATTTGACGCCATCGCCAGTGACAAATGTTAATGGAAATATA-----------------------------------------------------------------GCACAGGCAGCA-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCTTCAGCGCCTAGATTGCTGCTGCAACTGGACGCAG------------------------------------CAAC-----TG
droSim2 x:5372070-5372206 + ACGAGCA-CAGC------AGCAGCAG-----------------------------------------CAGCGACA---GCG--------------ACAACAACTAGCCATGCCACG---------CCCACGGACA---------------------A---------------------------GAGCAACAGCAACAA------------------------CATG--------------------------------------------------------------------------------GCACAT--------CCC-ATACATCCCTCGCAGCAGCAACACCACC----------------------------------------------------------------------------------AACAACA------GA---------TAC-----------------------T-----GC--------------------------------------------------------------------------------------------------------------------------------------------ACGA
droSec2 scaffold_5:1500249-1500404 - ATAAATT-CAAC------AACGACGA--------CGGCCACTTCGTTGGTAATAAACTCGA---------CAGCAGGAG------CA--------GCTGAA----------------------------------------------------------CAAGTTGTAGAGGAGTCATTAA---AAGTAGC------A------------GCAGCAA---CAA---------CACTAGCAG------------------------------------CT-----------------------------------------------------------------------------------------AAACAGGAAACA-----------------------G---------------------------------TTGCA------GT---------TGC-----------------------T-----GC----------------------CGCCTGTG----------------------------------------------------------------------------------------------------------TTGCTCCT
droYak3 2R:9276099-9276222 + ACG-CAA-CAGC------AATAGC-----------------------------------------------A---G------CAACATAAGCGC--------AACCAGCA----------------------------------------------A---------------------------CATTAGTTGGCGCAGCGGCAACATCGGCGGCAGCAACAA---------------------CAAAC-------------------------------------------------------------------------------------------------------------------------ACATCAAAAGCG-------------------------------------------------------------------------------------------------------------GTTTGAAAACTTG-----------CGCATTTG----------------------------------------------------------------------------------------------------------TTGTTGCT
droEre2 scaffold_4690:8222409-8222534 + ATTACAG-CAGC------AACAACAC------------------GTGGAAA----GGG---------C---A---A---------CGCAGACGCCACAATTATTGGGCATCCAACT------------GCCG-----------------------AA---------------------------AGGCAGCAGCAGCAGCG---------GCAGCAA---CAA---------CACTTGCCA----------------------------------------------------------------------------------------------------------------------------------CAACGACAACAATC--------------------------------------------------AAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATGTCTA-CAAC------AACAAGAA-----------------------------------------CAGCATTG---GC------------G--CCTTCTTTCAGACCTGCAAGG---------TAAGCAGAA--------------------------------------------------A------------AGAAGAA------------------------GCAGCAGCAGCAGCAGCAAAT------TTCTAT---------------TCA-----------------------------------------------------------------------------------------CCATTCTTAAAA--------------------------------------------------CACTTGAAAACA------GT---------TATTGCCCAATGTTG-TTGCTGGTTCAGTTAA---------------------------------------CGG--TTCGAACCAACATTCGGAGTTTCATAAGTCAGATT--TGTCGCAACTAGACCCAAACTGACTTGGTTCGGTTCAGGGCTTGCATACAATTGGCA-------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................AGAA------------------------GCAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CA-ACAA-CAAC------AACAAC--------------------------------------------AGCAG---------CAACA--------AGAGCT---------------------------------------------GAA---------------------------------------------------------------------------------------------------------------AGGTTTTAAGCCAGCGACAGCTGAAAAAAA----------TTT----GCATAT--------GCAAA----------------------------------------------------TT-----------------------GAT----------TTC-T--CTA----CAC--GAACACA------GT---------TGTTGC--------------------T-----GT----------------------------AGT---------------------------------------------TG-------------------------------------------------------TTGTTGTAGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAACAA-CAAC------AACAAAG------TCGCAGCGAAAGTGCTAAAA----AATCAACAGCAGCAGCAGCA---GCAGC-----------------------AACA------ACAACAAAAACAACAGAA-------------ACA------A---------------------------AAGCA---------------------------------------GCAGCAGCAGCAG------CCCAAAACTTCAAT---------------AAG-----------------------------------------------------------------------------------------CAACAGCAACAACAATTTAAAATT--------------------------------------------------------G----------CACAGCCCACAAAAT-TTGCATGTTCT-----GC----------------------------AAA------AGG---GCTAAAAAACATACAAAACT-------------TA-------------------------------------------------------TTAAACCAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................AAAA----AATCAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
droWil2
ATGTCCCGCCACAA---CAACAACAG-----------------------------------------CAGCAGCA---GCAAC-----------------------AACA------ACAAC-------------AGCAGCAACAATCCCAACATCAT---------------------------CATCCAC------------A------------------------GCAGCAACAGCAACAACAACC------TCCGCC---------------GCA-----------------------------------------------------------------------------------------ACATTCCA----------------------------------------------------------TGGAGGCA------CA---------TTATGC-----------------------------------------------------CCAAGC---------------------------------------------TG-------------------------------------------------------CTGC-----TGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................CAAC-----------------------AACA------ACAAC-------------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20400040
.........CACAA---CAACAACAG-----------------------------------------CAGCAGCA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100010
.......................................................................AGCA---GCAAC-----------------------AACA------ACAAC-------------AGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.............................................................................................................................................................................................AC------------A------------------------GCAGCAACAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................................................A---GCAAC-----------------------AACA------ACAAC-------------AGCAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
dp5
GTGGCAA-CATC------CACAGCAG-----------------------------------------CAGCAGCA---GCAGCAACA--------ACAACA---------------------------------------------CCCAACACCAA---------------------------CACCAGCAGCAGCAGCGGAA---------------------------GCAGCAGCAGCAGCAAGG------------------------------------------------------------------------------------------------------TTGACGATGAGTACACACCATTC---------------------------------------------------------------------------------TGGTGGCTGCCGAATATTGGCTGGCGGCTCGATCGT---------------------------------------CAG--GTCG-------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................AGCAGCAAGG------------------------------------------------------------------------------------------------------TTGACGATG.....................................................................................................................................................................................................................................................................................1911.0010000100000
.........................................................................CA---GCAGCAACA--------ACAACA---------------------------------------------CCCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................CAGCAGCAGCAAGG------------------------------------------------------------------------------------------------------TTGACGATGAGT..................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................CAA---------------------------CACCAGCAGCAGCAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.8350400000100
................................................................................................................................................................................................GCAGCAGCGGAA---------------------------GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310100000000
...........................................................................................................................................................AA---------------------------CACCAGCAGCAGCAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.3320100000100
.....................................................................................................................................................................................................AGCGGAA---------------------------GCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................2140.2510100000000
......................................................................................................................................................................................................GCGGAA---------------------------GCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................2060.1710010000000
...........................................................................................................................................................AA---------------------------CACCAGCAGCAGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410100000000
............................................................................................................................................................A---------------------------CACCAGCAGCAGCAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000100
....................................................................AGCAGCA---GCAGCAACA--------ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..........................................................................................................................................................CAA---------------------------CACCAGCAGCAGCAGCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000100000
......................GCAG-----------------------------------------CAGCAGCA---GCAGCAACA--------AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
...................ACAGCAG-----------------------------------------CAGCAGCA---GCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
ACATCCA-CAGC------AGCAGCAG-----------------------------------------C---A---G------CAACA--------ACAACA---------------------------------------------CCCAACACCAA---------------------------CACCAGCAGCAGCAGCGGAAGCA---------------------GCAGCAGCAGCAGCAGCAAGG------------------------------------------------------------------------------------------------------ATGACGATGAGTATACACCATTC---------------------------------------------------------------------------------TGGTGGCTGCCGAATATTGGCTGGCGGCTCGATCGT---------------------------------------CAG--GTCG-------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................CAGCAGCGGAAGCA---------------------GCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
....CCA-CAGC------AGCAGCAG-----------------------------------------C---A---G------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
..................AGCAGCAG-----------------------------------------C---A---G------CAACA--------ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
.........................................................................................................................................................................................................GAAGCA---------------------GCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
......A-CAGC------AGCAGCAG-----------------------------------------C---A---G------CAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
droAna3
CCATCAA-CAAC------ATCAGC-----------------------------------------------A---A---------CACCACCAC--------CACCAACA----------------------------------------------T---------------------------CAGCAACATCAGCAG------------------------AGTCAGCAACTTCAGCAGCAACAGCA------CGCCAACT-------T-----TCT-----------------------------------------------------------------------------------------CCACATCCAACA-----------------------GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........C------ATCAGC-----------------------------------------------A---A---------CACCACCAC--------CACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
droBip1
ACAGCAA-CAAC------ATCAGGAG-----------------------------------------CAGCAGCG---GC---------------------------------------------------------------------------------------------------------------------AACG------------GCAA---CA---------ACATCAGCAGCAATAAT----------------------------------------------------------------------------------------------------------------------------------------TAGAAATTAGTCCTCGGCAAGTTTCGTTTTTATTTTTATATATAAACACTTGAATTTA------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----TGSizeHit CountTotal NormTotal
No Reads
droKik1
CTACCAG-CAGC------AACAAGAT-----------------------------GCCCAG------CAGCAACAG------CAGCA--------ACTCCACATGGAGCA----------------------------------------------A---------------------------CAGCAACAACAACAACAACAGCAGCAGCAGCAACAACAATATGTGCAACATCAGCAG------CC------CGCCAT---------------TCA-----------------------------------------------------------------------------------------GCATACGCAGCA-----------------------GAT----------TT--A--CTA----CACCTCAGAGCA------AG---------TAC-----------------------T-----AC----------------------------AGC------CCAA-----------------------------------TG-------------------------------------------------------CCAT-----TGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGCCCAGCAGCAG---CAACAGC--------------------------------------------AGCAGCAGCAA------CA--------ACTGCACTTAGAGCA------GCAAC-------------AG---------------------------CA---------------GCAGCA------------------------GCAACAACAACATTATGTGCAGCACCAGCAGCAGCAACC------CGCCAT---------------TCA-----------------------------------------------------------------------------------------GCATACACAGCA-----------------------GAT----------TT--A--CTA----CACTTCAGAGCA------AG---------TTC-----------------------T-----GC----------------------------AAC------CAAA-----------------------------------TG-------------------------------------------------------CCAT-----TGSizeHit CountTotal NormTotal
No Reads
droEle1
ACATCTATTGGCAACAGCAACAGC-----------------------------------------------A---A------CAACACTGGGGT--------ACGCTGAT------GCAAC-------------GG---------------------------TG---------------GCCACGGCAACAACAACAT------------------------TGCTAGCGGCCGCAGCTGCAGCCACG------CGGCAAGGTTTGATTCCCCCCTCAACAAAAAAAAAAAACGAAAAACTTGAGAGCAGAT--------CTAGT----------------------------------------------------TT---------------------------------CGATTCTGATCTGCGTTATCT------CAATTATAGTTGTTGTTGTTGCTGCCCAAAACTCG-AAACAACACTAATGT---------------------------------------CATTTGCCA-------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
ACATCAG-CAGC------AGCAACAT-----------------------------------------CAACAGCAGCAG------CA--------------------GCA----------------------------------------------TCAA------------------------CAGCAGCAGCAGCAG---CAGCATCAGCAGCAGCAACAA---------CATCAGCAG----------------------------------------------------------------------------------------------------------------------------------CAGCAACA----------------------------------------------------------------------------------------------------------------ACATCAAAGCATTGGAATGTTTGATGCCAATGAAGTTAACGA--TGTCATCCAGAAT---------------------------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droBia1
ATGCCCAGCAGC------AACAGC-----------------------------------------------A---G------CAGCA--------ATTGCACCTGGAGCA----------------------------------------------A---------------------------CAGCAGCAGCAGCAG------------------------TATGTCCAGCACCAGCAGCAGCAACC------CGCCAT---------------CCA-----------------------------------------------------------------------------------------GCACACACAGCA-----------------------GAT----------TT--A--CTA----CACCTCCGAGCA------GG---------TGC-----------------------T-----GC------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCCCAG-CAGC------AGCAGC-----------------------------------------------A---A------CAGCA--------ATTGCACCTGGAGCA----------------------------------------------A---------------------------CAGCAACAGCAACAA------------------------TATGTGCAACACCAGCAGCAACAACC------CGCCAT---------------CCA-----------------------------------------------------------------------------------------GCACACGCAACA-----------------------GAT----------TT--A--CTA----CACTTCCGAGCA------GG---------TTC-----------------------T-----GC----------------------------AGC------CCAA-----------------------------------TG-------------------------------------------------------CCAT-----TGSizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCAA-CAAC------AACAATCGATGGGTGGTGGTGATCCTGGTGATA----ATG---------C---A---A---------CGTCGACGT--------CAGCGGCA----------------------------------------------G---------------------------CAGCAGCA------------------GCAGCAG---CAA---------CATTGACGG----GATC------CTCCAT---------------TTA----------------------TG--GTGCAGACGATGCAGGTGC-GGGTGTTGCTAGTGGC------------------------------------------------------------------------------------------------------------------------------GGTGTTG-GTGTTGGTGGTATTAG---------------------------------------CAG--TGCG-------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
AG--CAG-CAGC------AGCAGC--------------------------------------------AGCAGCAGCTT------CA--------------------TCA----------------------------------------------T------------------------------CACCATCAGCAA------------------------CATGGGCAGCATCAGCA--------------------ACATTTGACGCCATCGCCAGTGACAAATGTTAATGGAAATATA-----------------------------------------------------------------GCACAGGCAGCA-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCTTCAGCGCCTAGATTGCTGCTGCAACTGGACGCAG------------------------------------CAAC-----TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................A-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCTTCAGCGCCTAGAT....................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AGTGACAAATGTTAATGGAAATATA-----------------------------------------------------------------GCA..........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CACCATCAGCAA------------------------CATGGGCAGCATCA................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACCATCAGCAA------------------------CATGGGCAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTAATGGAAATATA-----------------------------------------------------------------GCACAGGCAGCA-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------C...........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GTTAATGGAAATATA-----------------------------------------------------------------GCACAGGCAG...................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................ATGGGCAGCATCAGCA--------------------ACATTTGACGC..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGCAGCTT------CA--------------------TCA----------------------------------------------T------------------------------CACCATCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TAATGGAAATATA-----------------------------------------------------------------GCACAGGCAGCA-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------C...........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TCAGCAA------------------------CATGGGCAGCATCAGCA--------------------ACA......................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTGACGCCATCGCCAGTGACA................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GACGCCATCGCCAGTGACAAATGT...........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................AGCAA------------------------CATGGGCAGCATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................................................................................................................................TTAATGGAAATATA-----------------------------------------------------------------GCACAGGCAGCA-----------------------..........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCTGCAACTGGACG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CAGCAA------------------------CATGGGCAGCATCA................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AGCA--------------------ACATTTGACGCCATCGCCAGTGAC.................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TCA----------------------------------------------T------------------------------CACCATCAGCAA------------------------CATGGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CAGCAGCTT------CA--------------------TCA----------------------------------------------T------------------------------CACCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................AGCA--------------------ACATTTGACGCCATC..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GACGCCATCGCCAGTGACA................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGCGCCTAGATTGCTA...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----------------------G---------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCTTCAGC............................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGC------AGCAGC--------------------------------------------AGCAGCAGCTT------CA--------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.G--CAG-CAGC------AGCAGC--------------------------------------------AGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AG-CAGC------AGCAGC--------------------------------------------AGCAGCAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAG-CAGC------AGCAGC--------------------------------------------AGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGAGCA-CAGC------AGCAGCAG-----------------------------------------CAGCGACA---GCG--------------ACAACAACTAGCCATGCCACG---------CCCACGGACA---------------------A---------------------------GAGCAACAGCAACAA------------------------CATG--------------------------------------------------------------------------------GCACAT--------CCC-ATACATCCCTCGCAGCAGCAACACCACC----------------------------------------------------------------------------------AACAACA------GA---------TAC-----------------------T-----GC--------------------------------------------------------------------------------------------------------------------------------------------ACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATAAATT-CAAC------AACGACGA--------CGGCCACTTCGTTGGTAATAAACTCGA---------CAGCAGGAG------CA--------GCTGAA----------------------------------------------------------CAAGTTGTAGAGGAGTCATTAA---AAGTAGC------A------------GCAGCAA---CAA---------CACTAGCAG------------------------------------CT-----------------------------------------------------------------------------------------AAACAGGAAACA-----------------------G---------------------------------TTGCA------GT---------TGC-----------------------T-----GC----------------------CGCCTGTG----------------------------------------------------------------------------------------------------------TTGCTCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................ATAAACTCGA---------CAGCAGGAG------CA--------GCTGAA----------------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
............................................................................................................................................................................AGTCATTAA---AAGTAGC------A------------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................................................................................................................................................................................................AA---CAA---------CACTAGCAG------------------------------------CT-----------------------------------------------------------------------------------------AAACAGGAAAC..................................................................................................................................................................................................................................................................2711.0010010
......................................................................................A--------GCTGAA----------------------------------------------------------CAAGTTGTAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
ACG-CAA-CAGC------AATAGC-----------------------------------------------A---G------CAACATAAGCGC--------AACCAGCA----------------------------------------------A---------------------------CATTAGTTGGCGCAGCGGCAACATCGGCGGCAGCAACAA---------------------CAAAC-------------------------------------------------------------------------------------------------------------------------ACATCAAAAGCG-------------------------------------------------------------------------------------------------------------GTTTGAAAACTTG-----------CGCATTTG----------------------------------------------------------------------------------------------------------TTGTTGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATTACAG-CAGC------AACAACAC------------------GTGGAAA----GGG---------C---A---A---------CGCAGACGCCACAATTATTGGGCATCCAACT------------GCCG-----------------------AA---------------------------AGGCAGCAGCAGCAGCG---------GCAGCAA---CAA---------CACTTGCCA----------------------------------------------------------------------------------------------------------------------------------CAACGACAACAATC--------------------------------------------------AAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................CAGCAGCAGCAGCG---------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100

Generated: 05/19/2015 at 06:50 PM