ID:

dvi_14495

 Coordinate:

scaffold_13042:2805011-2805161 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.8

Flybase annnotation

exon [dvir_GLEANR_16351:8]; CDS [Dvir\GJ15921-cds]; intron [Dvir\GJ15921-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAGTTACAGTTACAGCAGCAGCAGCGACAGCGACCGCAGGCGGGAACAGTTATCAAGGCGCGACAACAGTTGGGCATCGATAACGATAACGATAATTATGAGAGTGCGGCAAATGCAAATGCAAAACATTTATTGTATTCATCAGTGCAGGCAGGTTTTTCCTATTGTTTTTTTTTTGTTTTTGTAATCAATTTATGTTAACGTATCAATTTAGTTTGTACACCGCATTCTTTATGCTCTTTAAACGAA
************************************************************************************************....(((((((((((.(((((...........))))).)))))))).))).........************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
................................................................................................ATTATGAGAGTGCGGCAAATGCAAAT................................................................................................................................. 26 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................ATCAAGGCGCGCCAACAGTTGG................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATTTGTTGTATTCATCAGTGC..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAATTATGAGAGTGCGGCAAAT....................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAACGATAACGATAATTATGAGAGTTC.............................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTATTCATCAGTGCAGGCA................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AGTGCGGCAAATGCAAATGC............................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................GACAGCGACCGCAGGCGGGAACAGTT...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................ATCAAGGCGCGACAACAGTTGGGC.............................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATCGATAACGATAACGATAATTATGAG................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTACACCGCATTCTTTATG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CAGCGACCGCAGGCGGGAACAGTC...................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................CGACAGCGACCGCAGGCGG.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GACCGCAGGCGGGAACAGTT...................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................CAGCGACCGCAGGCGGGA............................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAACGATAATTATGAGAGT................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................GGCATCGATAACGATAACGAT............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TGAGAGTGCGGCAAATGCAAATGC............................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GTTACAGTTACAGCAGCAGC................................................................................................................................................................................................................................... 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................AAAGCGAGCGCAGGCGGG............................................................................................................................................................................................................. 18 2 10 0.30 3 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0
..........................CGTAAGCGAGCGCAGGCGGG............................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................TTTTTTTTTGTTTTTGTAA.............................................................. 19 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................AGCAGTTATCAAGGCTGGA.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................GCGAGCGCAGGCGGGTTC.......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................ATGAGAGTGCGGACAATGT..................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTCAATGTCAATGTCGTCGTCGTCGCTGTCGCTGGCGTCCGCCCTTGTCAATAGTTCCGCGCTGTTGTCAACCCGTAGCTATTGCTATTGCTATTAATACTCTCACGCCGTTTACGTTTACGTTTTGTAAATAACATAAGTAGTCACGTCCGTCCAAAAAGGATAACAAAAAAAAAACAAAAACATTAGTTAAATACAATTGCATAGTTAAATCAAACATGTGGCGTAAGAAATACGAGAAATTTGCTT
************************************************************************************************....(((((((((((.(((((...........))))).)))))))).))).........************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR1106729
mixed whole adult body
 GSM1528803
follicle cells		 SRR060671
9x160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 V116
male body		 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
..........................................................CCGCGCTGTTGGCCAC................................................................................................................................................................................. 16 2 20 1.30 26 0 26 0 0 0 0 0 0 0 0 0 0
...............................................TGTCAATAGTTCCGCGCTGTT....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................CGTCGTCGTCGCGGTCGCTGGCGTCCG................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCGTAAGAAATACGAGAAATT..... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAACACCAAAAACATTAGTTA......................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AACATGTGGCGTGAGAAATA.............. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CGTCAATGTCAATGTCGTCG...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TAAGCAGTCACGACCGTCCAA............................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TAAGCAGTGACGACCGTCCAA............................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TAAGTAGTGAAGACCGTCCAA............................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................CGCGCTGTTGGCCAC................................................................................................................................................................................. 15 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0
...............................................................CTGTTGTCAAACCGTATCTATT...................................................................................................................................................................... 22 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................AAACAAAAACATTATTTAA........................................................ 19 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................AAGCAGTGACGACCGTCCA............................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAAAAAAAAAGATTAGTTA......................................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..........CTATGTCTTCGTAGTCGCT.............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................TTACCTTGTGTGAATAACAT................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:2804961-2805211 + dvi_14495 AGCAGTTACAGTTACA-GCAGCAGCAGCGACAGCG---ACCGCAGGC--GGGAACAGTTATCAAG----------GCGCGACAA-----------------CAGTTGGGCATCGATAACGATAACG---ATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CAAATGCAAAACATTTATTGTATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTG------TT-TTTTTTTTGTTTTTGTAATCAATTTATGTTAACGTATCAATTTAGTTTGTACACCGCATT--CTTT-----------------ATGCT--------------------CTTTAAACGAA
droMoj3 scaffold_6328:809075-809287 - AGCAGCAGGAGCAGCA-GCAACAGCAAT--CAACA---GCAGCTAA-----TAA----------AGCGCGG----------CAG-----------------CATTTGGGCATCGATAACGATAACG---ATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CA------AAACATTTATTGTATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGC-AGGCAGGTTTTTC--------------------------CT---ATTTTCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATA---------------------------------------------TGTTCACGTATCAATTTAGTT-ATATAACACATT--CCTT--------------AT----TT--------------------CTCTCAACGAA
droGri2 scaffold_14853:1336924-1337147 - AGCAGCAGCAGCAACA-ACAACAGAAGCAGCAAAA---ACAACAAGA--A-CGGCAG------------------------CAGCAGCA--GCAG-----------------------CAGCAGC-TTGATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CAAATACAAAACATTTATTAAATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGC-AGGCAGGTTTTTC--------------------------CTTTG-TTTTCTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCACGTATCTATTTAGTTTGTACACCATATT--CTTTTCTTAGTGCTTCTTAG----TT--------------------ATTTGGATCTA
droWil2 scf2_1100000004590:2677347-2677592 + AACCACAACAACAACA-GCAGCAGCAGCAGCAAGT---GGTGCAGCA--A-CAACAA------------------------CAGCAAGC--ACCAC--------------------------------------------------------------------------------GTTTTACCACACATCCGTCGTCATCGGGATCC--------------------------ATTGTTAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGTACAAAGATTTTA------------------------------------------------------------------------------------------------------------------------------------------------CAGTGTCATGCT----------------------------------------------------------CTGGGTAAGTTGTTT--------T-----------------------TTCGTCTTGGACTTTGTTTTTTTTTTGTTTCTTCACTCACTCCATGTAATCCCAACAAT-AAGT------TTCA--TC-TAAAC--------------ATTA--------------------CACTTGTCCTTCAAA
dp5 XL_group1a:2320536-2320749 - AACAGCAGCAGCAGCACACGGCGCGGGCAA---TA---GCCG--GCA----------------------------------------------------------------------------------ATAATTATGAAAGTGCCGCGCAGCAGCAGCA-----------------------------------------------------------TTTATTGCATGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CATTGATTTTCTTTTGCTTTCCTTTTACTTTACAAATTGTTTCCTACGTATTTAGTTACCACACACGTATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTT-ATATTTTA--TT-TATTT------------ATTT----TT--------------------TTTTAAATTTT
droPer2 scaffold_28:757799-758010 - AACAGCAACAGCAGCACACGGCGCGGGCAA---TA---GCCG--GCA----------------------------------------------------------------------------------ATAATTATGAAAGTGCCGCGCAGCAGCAGCA-----------------------------------------------------------TTTATTGCATGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CATTGATTTTCTTTTGCTTTCCTTTTACCTTACAAATTGTTTCCTACGTATTTAGTTACCACACATGTATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTT-ATATTTTA--TT-TATTT--------------TT----TT--------------------TTTTTAATTTT
droAna3 scaffold_13334:461610-461910 + AGCAGCAGCAGCACCA-CCAACAACAACAACATTC---ACCGCAGCA--G-CATTTA------------------------ATTCG--AGCGATAC----------------------CTGT-------------------------------------ATCA------A------GGT--------------------------------------------------------------------AAGTCTTTATTTATTTTTTTTTTTAAATTTATTTCTTAAATATTAATTCTTAAACAAAAATAAAAATAAAACGTCCCACCCTTTGCCATTTTTTCAAAAATTTTTTAAAGCGAGTTCATTTTTTATTTTATTATTTTTTTTTTTTGGAAATTCCACCAAACTCGTGATAATTGCCAGTTCATGACTTCATTTCGTTCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG--ATTC-----------------ATGGTTTTCGAGTG-------------------AAT
droBip1 scf7180000396045:9129-9325 + AGCGGCAACAGCAACA-ACATCAGGAGCAGCAGCGGCAACAGCAACA--A-CATCAG------------------------GAGCAGCA--GCGGCAA---------------------------------------------------------CAGCAACA---ACATCACGAGCAGTAGCGGCAACGGCAACAACATCAGCAGCA--------------------------ATAATTAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTC------------------CTCGGCAAGTTT---------------------------------------------------------------------------------------------------------CGTTTTTATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAAACATTTGAATTTAGTTTTTAAACTT-----------------------------------------------------------AATT
droKik1 scf7180000302441:1138163-1138345 - AGCAGCAACAGGCGCA-GCAGCTACTGCAGCAGCA---ACAGCAGCA--GGTAA----------ACGTTCTCAGCTCGCAC--AA--------------------------------------------------------------AACAACAACAACG-----------------------------------------------------------ACAAATACAA------------CCGAGAGAGGC-----AAACATTTTATTCCAAA-----------------------------------------------------------------------AATGCTGC----------------------------------------------------------------------------GAA-----------------------AACATAAAACTCACA-AAAGAAAAAATGTTATTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA------------AA---------------TGTGTTTTG-----------TCTT
droFic1 scf7180000453665:16245-16508 + AGCAGCAACAGCCGCA-GCAGCAACAACGGCAGCA---GCAGCCGCA--G-CAGCAA------------------------CAACAGCA--GCCGCAACAGC---------------------------------------------------------AACA--------A----CGGCAGCAGCAGCAGCCGCAGCAGCAGCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AAGAGTTAC--------------------------CAATA-------------------------------------------------------------------------------------------------------TGTTTGTAACACTATTGGTGTAGATGTCCCTCTTTGCTGGTGTAATTTAAAACGCT--------------------------CAG----------------------------TTA------TT-TATTACTTATTTTAGGCTTTACTTTTTATTTCAACGTCTGCTTGATTGCCA-TCTTCACC--CTCG-----------------ACTGA--------------------CTTCAATCGAA
droEle1 scf7180000491249:7272367-7272549 + AACTATTACAGCAGCA-ACAACAGCAACTACAACA---GCCGCAGCA--A-CAACAA------------------------CAGCAGCA--AC------------------------------------------------------------------A------CCAAC-CGAAG-----CAA--------------------------------------------------------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTCAGCAT----------------------------GCA--------------------------------------------------------------------------------------------------------------------------------------AT--T---TTTTTGTAG------------------TCGCTGCAA--------------------TGCACTTGGGTTCTTTCGC--------T-----------------------TTTTTTTTGGATTTTTTGTTTTTACTTTTT----------------------------------------------------TT-----------------TTGCC--------------C-----TTTTAATTTGT
droRho1 scf7180000779949:291931-292153 - AGCAGCAACAGCAACA-GCAGCAACAGCAACAGCG---ACAGCGACA--A-CATCGC------------------------CGACAGCG--GCAGCAACAAC---------------------------------------------------------GCCA--------A----GAAAAACAACAACGACGGGAACAACAAAAGCA--------------------------ATAATGAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAG------------------------------------------------------------------------------------------------------------------CTTAAACGCGAGTGTGAGTTAGTGTAC---TGAAAAAAAAATGCATTATAACATT----------------------------------------------------------AAAGAAAGCAATTTT--------T-----------------------TTAGAATTA------TTATTTGT--AATTTT---------------------------------------------------------------------------------------T----------TTTATAAT
droBia1 scf7180000302428:5895995-5896191 + AACAGCAACAGTTACT-GCTCCAGCAACAACAGCA---ATCTCCGCA--A-CACCAT------------------------CAGCAACA--GCAT-----------------------------TG---GTCGCCCCAAGTGAGTGGAAAATA-----------------------------------------------------AAAACTCATAAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGT---TTATAAAAGTATTCCTATGAACATT-----------TTTAAAATTAATTTTAGTTGTTGATTGTTTCATTAAATTTCCA--------------------------CAAATGTTT----------------------------------------------------------------------------------ATGCCTCA------------------------------------------------------------TTT
droTak1 scf7180000414375:281287-281437 - AGCAGTTGCAGTTGCA-GTTGCAACAGCAGCAGCA---ATCGCAGTA--T-CAGCAG------------------------CAACAGAC--GACGCAACTGC-------------------------------------AGTTGCCAGGTGGCGATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGCAATCGGTGTACACACCTCCTCCAGTGC-AGGCAGGTTTT-C--------------------------CTTTGATTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TG-----------CTTT
droEug1 scf7180000409466:287130-287312 - AGCAGCAGCAGCAACA-GCAACAGCAACTGCAGCA---GCAGCAGG-----TAA----------ACGTTCTCAGCTCGCAC--AA-------------------------------AACAACAACA---AAAAT------------------------------------------------CAA--------------------------------------------------------CAG--AGAGGC-----AAACA-TTTATTC-AAA-----------------------------------------------------------------------AATGCTGC----------------------------------------------------------------------------GAACATAACTCACCAAAAAC-TTAAAAAA------------TATTGCAAAAATATTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTTA------------AT---------------TGTGTTTTG-----------TCTT
dm3 chrX:20586094-20586281 - AGTAGCAACAGCAACA-GCAACAGCAGCAACAGCA---ACAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------ACATCTACAATAGG-CTGGG-----CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TAACGAATTG-----------------------------------------------------------------------A-------------------------------------------------------AATT--TGTTTGTTTGT------------------TGCTGCTGCTG--------------------GTTGTTTGCCATTTGTTG--------CAGTTGTTTTT------GCCAATTTTTCCAGTTG------CTTTTTGT--TATTTTT---------------------------------------------------------------------G--------------------CAACCGTTGTTTGTT
droSim2 3r:7034289-7034439 + AGCAGCAGCAGCAGCA-ACAGCAGCAGCAGCAGCA---GCAGCAGCA--G-CAACAGCAACCAGC----------TT--------------ACTACGTCAGC---------------------------------------------------------AACT--------A----TAGCAACTACAGCAATAGATACAGCTACAGCG--------------------------AT------------------------AG-TTTATTG-TAA-----------------------------------------------------------------------ATCGCTGC----------------------------------------------------------------------------AG---------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTA------------GG---------------TG-GATTTT-----------TCTT
droSec2 scaffold_36:283695-283849 + AGCAGCAGCAGCAGTA-CCAGCAGCAACAGACGAC---ACAGCTGCC--G-GTGCAG------------------------CCGCAGTT--G---------------------------------------------------------------CAGCATCAACAATT--GCAGGC-----CGG--------------------------------------------------------TGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAAGCAATCGGTGTATGCACCTCCTACAGTGC-AGGCAGGTTTT-C--------------------------CAATGATATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA-----------TCTT
droYak3 X:7152973-7153149 - AACAGTCGAAACAGCA-GCAGCAGCAACAGCAGCA---ACAGCAGCA--A-CATCAG------------------------CAGCAGCA--GCAACATCAGC---------------------------------------------------------AGCT--------G----CGACAGCAACA-----------------------------------------GGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------GGC-GACCAGGTGATAC--------------------------GATGGAGTGGCACTAACAATACTTGTACTTTT--------------------------------------------CGTTTC----------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------TTTTTTTG------------AT---------------TTTTTT----------TTCTCTTT
droEre2 scaffold_4770:17588862-17589067 - AGAAGCAGCAGCAGAG-GCAGCAACAGAGGCAGCA---GCAACATGAAGT-AATTAA--------------CAA-------CCAC--------------------------------------------------------------AACAACAGCAGCAGCA---ACA--------------------------------------------------------TCATGAGCCAG-----TGG----AGCC-----GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGC-----------------------------------------------------------------------------------------GTTGA-------------------------------------------------------CAAT--AGCATT---GAAG-----------T----TGCTGCCGC----------------------------------------AGTTGCAGCTATTGTTGTTGCCGTTGTTGTCA-------TTGTAA---TGTGCTGA--TTTCATG----------------------GCA----AGCGCATACACCG------------------------------------------------------------CGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCAGTTACAGTTACA-GCAGCAGCAGCGACAGCG---ACCGCAGGC--GGGAACAGTTATCAAG----------GCGCGACAA-----------------CAGTTGGGCATCGATAACGATAACG---ATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CAAATGCAAAACATTTATTGTATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTG------TT-TTTTTTTTGTTTTTGTAATCAATTTATGTTAACGTATCAATTTAGTTTGTACACCGCATT--CTTT-----------------ATGCT--------------------CTTTAAACGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................ATTATGAGAGTGCGGCAAATG-----------------------------------------------------CAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000100000000000000000000000000000000000000000000000000010
..................................................................................................................................TAATTATGAGAGTGCGGCAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TGTATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCA..................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................AGTGCGGCAAATG-----------------------------------------------------CAAATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
............................GACAGCG---ACCGCAGGC--GGGAACAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................ATCAAG----------GCGCGACAA-----------------CAGTTGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................ATCGATAACGATAACG---ATAATTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACACCGCATT--CTTT-----------------ATG.................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................CAGCG---ACCGCAGGC--GGGAACAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...........................CGACAGCG---ACCGCAGGC--GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................G---ACCGCAGGC--GGGAACAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
..............................CAGCG---ACCGCAGGC--GGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATAACG---ATAATTATGAGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................GGCATCGATAACGATAACG---AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................TGAGAGTGCGGCAAATG-----------------------------------------------------CAAATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....GTTACAGTTACA-GCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTTTTTGTTTTTGTAA.....................................................................................................19100.101000000000000000000100000000000000000000000000000000000000000000
droMoj3
AGCAGCAGGAGCAGCA-GCAACAGCAAT--CAACA---GCAGCTAA-----TAA----------AGCGCGG----------CAG-----------------CATTTGGGCATCGATAACGATAACG---ATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CA------AAACATTTATTGTATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGC-AGGCAGGTTTTTC--------------------------CT---ATTTTCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATA---------------------------------------------TGTTCACGTATCAATTTAGTT-ATATAACACATT--CCTT--------------AT----TT--------------------CTCTCAACGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...AGCAGGAGCAGCA-GCAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100
droGri2
AGCAGCAGCAGCAACA-ACAACAGAAGCAGCAAAA---ACAACAAGA--A-CGGCAG------------------------CAGCAGCA--GCAG-----------------------CAGCAGC-TTGATAATTATGAGAGTGCGGCAAATG-----------------------------------------------------CAAATACAAAACATTTATTAAATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGC-AGGCAGGTTTTTC--------------------------CTTTG-TTTTCTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCACGTATCTATTTAGTTTGTACACCATATT--CTTTTCTTAGTGCTTCTTAG----TT--------------------ATTTGGATCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATT--CTTTTCTTAGTGC............................................1911.00110
...................AACAGAAGCAGCAAAA---ACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
AACCACAACAACAACA-GCAGCAGCAGCAGCAAGT---GGTGCAGCA--A-CAACAA------------------------CAGCAAGC--ACCAC--------------------------------------------------------------------------------GTTTTACCACACATCCGTCGTCATCGGGATCC--------------------------ATTGTTAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGTACAAAGATTTTA------------------------------------------------------------------------------------------------------------------------------------------------CAGTGTCATGCT----------------------------------------------------------CTGGGTAAGTTGTTT--------T-----------------------TTCGTCTTGGACTTTGTTTTTTTTTTGTTTCTTCACTCACTCCATGTAATCCCAACAAT-AAGT------TTCA--TC-TAAAC--------------ATTA--------------------CACTTGTCCTTCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................TACCACACATCCGTCGTCATCGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00321000
............................................................................................................................................................................................ATCCGTCGTCATCGGGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
......................................................................................AGC--ACCAC--------------------------------------------------------------------------------GTTTTACCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.............................................................................................................................................................................................................................................GTTAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGTACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
........CAACAACA-GCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.35700070
...................AGCAGCAGCAGCAAGT---GGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100010
.ACCACAACAACAACA-GCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100100
...............A-GCAGCAGCAGCAGCAAGT---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200011
.......ACAACAACA-GCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200020
....ACAACAACAACA-GCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
AACCACAACAACAACA-GCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.08100010
...CACAACAACAACA-GCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100010
....ACAACAACAACA-GCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
....ACAACAACAACA-GCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
........CAACAACA-GCAGCAGCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...........CAACA-GCAGCAGCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.........AACAACA-GCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.........AACAACA-GCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
....ACAACAACAACA-GCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
...CACAACAACAACA-GCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
AACAGCAGCAGCAGCACACGGCGCGGGCAA---TA---GCCG--GCA----------------------------------------------------------------------------------ATAATTATGAAAGTGCCGCGCAGCAGCAGCA-----------------------------------------------------------TTTATTGCATGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CATTGATTTTCTTTTGCTTTCCTTTTACTTTACAAATTGTTTCCTACGTATTTAGTTACCACACACGTATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTT-ATATTTTA--TT-TATTT------------ATTT----TT--------------------TTTTAAATTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGTTTCCTACGTATTTAGT........................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................AATTATGAAAGTGCCGCGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................................................................................TATGAAAGTGCCGCGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
droPer2
AACAGCAACAGCAGCACACGGCGCGGGCAA---TA---GCCG--GCA----------------------------------------------------------------------------------ATAATTATGAAAGTGCCGCGCAGCAGCAGCA-----------------------------------------------------------TTTATTGCATGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC-AGGCAGGTTTTTC--------------------------CATTGATTTTCTTTTGCTTTCCTTTTACCTTACAAATTGTTTCCTACGTATTTAGTTACCACACATGTATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTT-ATATTTTA--TT-TATTT--------------TT----TT--------------------TTTTTAATTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................CACGGCGCGGGCAA---TA---GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droAna3
AGCAGCAGCAGCACCA-CCAACAACAACAACATTC---ACCGCAGCA--G-CATTTA------------------------ATTCG--AGCGATAC----------------------CTGT-------------------------------------ATCA------A------GGT--------------------------------------------------------------------AAGTCTTTATTTATTTTTTTTTTTAAATTTATTTCTTAAATATTAATTCTTAAACAAAAATAAAAATAAAACGTCCCACCCTTTGCCATTTTTTCAAAAATTTTTTAAAGCGAGTTCATTTTTTATTTTATTATTTTTTTTTTTTGGAAATTCCACCAAACTCGTGATAATTGCCAGTTCATGACTTCATTTCGTTCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG--ATTC-----------------ATGGTTTTCGAGTG-------------------AATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................CAACAACAACAACATTC---ACCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................AACAACAACATTC---ACCGCAGCA--G-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................ACAACATTC---ACCGCAGCA--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
AGCGGCAACAGCAACA-ACATCAGGAGCAGCAGCGGCAACAGCAACA--A-CATCAG------------------------GAGCAGCA--GCGGCAA---------------------------------------------------------CAGCAACA---ACATCACGAGCAGTAGCGGCAACGGCAACAACATCAGCAGCA--------------------------ATAATTAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTC------------------CTCGGCAAGTTT---------------------------------------------------------------------------------------------------------CGTTTTTATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAAACATTTGAATTTAGTTTTTAAACTT-----------------------------------------------------------AATTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCAGCAACAGGCGCA-GCAGCTACTGCAGCAGCA---ACAGCAGCA--GGTAA----------ACGTTCTCAGCTCGCAC--AA--------------------------------------------------------------AACAACAACAACG-----------------------------------------------------------ACAAATACAA------------CCGAGAGAGGC-----AAACATTTTATTCCAAA-----------------------------------------------------------------------AATGCTGC----------------------------------------------------------------------------GAA-----------------------AACATAAAACTCACA-AAAGAAAAAATGTTATTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA------------AA---------------TGTGTTTTG-----------TCTTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAACAGCCGCA-GCAGCAACAACGGCAGCA---GCAGCCGCA--G-CAGCAA------------------------CAACAGCA--GCCGCAACAGC---------------------------------------------------------AACA--------A----CGGCAGCAGCAGCAGCCGCAGCAGCAGCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AAGAGTTAC--------------------------CAATA-------------------------------------------------------------------------------------------------------TGTTTGTAACACTATTGGTGTAGATGTCCCTCTTTGCTGGTGTAATTTAAAACGCT--------------------------CAG----------------------------TTA------TT-TATTACTTATTTTAGGCTTTACTTTTTATTTCAACGTCTGCTTGATTGCCA-TCTTCACC--CTCG-----------------ACTGA--------------------CTTCAATCGAASizeHit CountTotal NormTotal
No Reads
droEle1
AACTATTACAGCAGCA-ACAACAGCAACTACAACA---GCCGCAGCA--A-CAACAA------------------------CAGCAGCA--AC------------------------------------------------------------------A------CCAAC-CGAAG-----CAA--------------------------------------------------------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTCAGCAT----------------------------GCA--------------------------------------------------------------------------------------------------------------------------------------AT--T---TTTTTGTAG------------------TCGCTGCAA--------------------TGCACTTGGGTTCTTTCGC--------T-----------------------TTTTTTTTGGATTTTTTGTTTTTACTTTTT----------------------------------------------------TT-----------------TTGCC--------------C-----TTTTAATTTGTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAGCAACAGCAACA-GCAGCAACAGCAACAGCG---ACAGCGACA--A-CATCGC------------------------CGACAGCG--GCAGCAACAAC---------------------------------------------------------GCCA--------A----GAAAAACAACAACGACGGGAACAACAAAAGCA--------------------------ATAATGAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAG------------------------------------------------------------------------------------------------------------------CTTAAACGCGAGTGTGAGTTAGTGTAC---TGAAAAAAAAATGCATTATAACATT----------------------------------------------------------AAAGAAAGCAATTTT--------T-----------------------TTAGAATTA------TTATTTGT--AATTTT---------------------------------------------------------------------------------------T----------TTTATAATSizeHit CountTotal NormTotal
No Reads
droBia1
AACAGCAACAGTTACT-GCTCCAGCAACAACAGCA---ATCTCCGCA--A-CACCAT------------------------CAGCAACA--GCAT-----------------------------TG---GTCGCCCCAAGTGAGTGGAAAATA-----------------------------------------------------AAAACTCATAAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGT---TTATAAAAGTATTCCTATGAACATT-----------TTTAAAATTAATTTTAGTTGTTGATTGTTTCATTAAATTTCCA--------------------------CAAATGTTT----------------------------------------------------------------------------------ATGCCTCA------------------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCAGTTGCAGTTGCA-GTTGCAACAGCAGCAGCA---ATCGCAGTA--T-CAGCAG------------------------CAACAGAC--GACGCAACTGC-------------------------------------AGTTGCCAGGTGGCGATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGCAATCGGTGTACACACCTCCTCCAGTGC-AGGCAGGTTTT-C--------------------------CTTTGATTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TG-----------CTTTSizeHit CountTotal NormTotal
No Reads
droEug1
AGCAGCAGCAGCAACA-GCAACAGCAACTGCAGCA---GCAGCAGG-----TAA----------ACGTTCTCAGCTCGCAC--AA-------------------------------AACAACAACA---AAAAT------------------------------------------------CAA--------------------------------------------------------CAG--AGAGGC-----AAACA-TTTATTC-AAA-----------------------------------------------------------------------AATGCTGC----------------------------------------------------------------------------GAACATAACTCACCAAAAAC-TTAAAAAA------------TATTGCAAAAATATTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTTA------------AT---------------TGTGTTTTG-----------TCTTSizeHit CountTotal NormTotal
No Reads
dm3
AGTAGCAACAGCAACA-GCAACAGCAGCAACAGCA---ACAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------ACATCTACAATAGG-CTGGG-----CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TAACGAATTG-----------------------------------------------------------------------A-------------------------------------------------------AATT--TGTTTGTTTGT------------------TGCTGCTGCTG--------------------GTTGTTTGCCATTTGTTG--------CAGTTGTTTTT------GCCAATTTTTCCAGTTG------CTTTTTGT--TATTTTT---------------------------------------------------------------------G--------------------CAACCGTTGTTTGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................ACAATAGG-CTGGG-----CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TATG...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................A--------------------------------------------------------------------------ACATCTACAATAGG-CTGGG-----CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................A---ACAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................ACAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................CAACAGCAGCAACAGCA---ACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................A---ACAACAGCA--A-CAACGG------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CA---ACAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------ACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT------------------TGCTGCTGCTG--------------------GTT.........................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGTTTGTTTGT------------------TGCT.......................................................................................................................................................................................................................17200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAACAGCA--A-CAACGG------------------------CA--------------------------------------------------------------------------AC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.......................GCAGCAACAGCA---ACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGTTTGTTTGT------------------TGCTG......................................................................................................................................................................................................................18160.1930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------TGCTGCTGCTG--------------------GTTGTA......................................................................................................................................................................................18140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTG--------------------GTTGTTTT....................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......ACAGCAACA-GCAACAGCAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AACAGCAACA-GCAACAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............AACA-GCAACAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A-GCAACAGCAGCAACAGCA---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...AGCAACAGCAACA-GCAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........AGCAACA-GCAACAGCAGCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACAGCAACA-GCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACA-GCAACAGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCAGCAACAGCA---ACAACAGCA--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........CAGCAACA-GCAACAGCAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
droSim2
AGCAGCAGCAGCAGCA-ACAGCAGCAGCAGCAGCA---GCAGCAGCA--G-CAACAGCAACCAGC----------TT--------------ACTACGTCAGC---------------------------------------------------------AACT--------A----TAGCAACTACAGCAATAGATACAGCTACAGCG--------------------------AT------------------------AG-TTTATTG-TAA-----------------------------------------------------------------------ATCGCTGC----------------------------------------------------------------------------AG---------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTA------------GG---------------TG-GATTTT-----------TCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................TTG-TAA-----------------------------------------------------------------------ATCGCTGC----------------------------------------------------------------------------AG---------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTA------------GG---------------TA-.....................2511.00100000000001000000
.........AGCAGCA-ACAGCAGCAGCAGCAGCA---GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000000100000
......AGCAGCAGCA-ACAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110000000000000000
.........AGCAGCA-ACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
droSec2
AGCAGCAGCAGCAGTA-CCAGCAGCAACAGACGAC---ACAGCTGCC--G-GTGCAG------------------------CCGCAGTT--G---------------------------------------------------------------CAGCATCAACAATT--GCAGGC-----CGG--------------------------------------------------------TGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAAGCAATCGGTGTATGCACCTCCTACAGTGC-AGGCAGGTTTT-C--------------------------CAATGATATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA-----------TCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAAGCAATCGGTGTATGCACCTC.................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
droYak3
AACAGTCGAAACAGCA-GCAGCAGCAACAGCAGCA---ACAGCAGCA--A-CATCAG------------------------CAGCAGCA--GCAACATCAGC---------------------------------------------------------AGCT--------G----CGACAGCAACA-----------------------------------------GGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------GGC-GACCAGGTGATAC--------------------------GATGGAGTGGCACTAACAATACTTGTACTTTT--------------------------------------------CGTTTC----------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------TTTTTTTG------------AT---------------TTTTTT----------TTCTCTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................ATCAG------------------------CAGCAGCA--GCAACATCAGC---------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.20101000000000
.........................................GCAGCA--A-CATCAG------------------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
droEre2
AGAAGCAGCAGCAGAG-GCAGCAACAGAGGCAGCA---GCAACATGAAGT-AATTAA--------------CAA-------CCAC--------------------------------------------------------------AACAACAGCAGCAGCA---ACA--------------------------------------------------------TCATGAGCCAG-----TGG----AGCC-----GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGC-----------------------------------------------------------------------------------------GTTGA-------------------------------------------------------CAAT--AGCATT---GAAG-----------T----TGCTGCCGC----------------------------------------AGTTGCAGCTATTGTTGTTGCCGTTGTTGTCA-------TTGTAA---TGTGCTGA--TTTCATG----------------------GCA----AGCGCATACACCG------------------------------------------------------------CGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................CAACAGAGGCAGCA---GCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000100
.................................................................................CCAC--------------------------------------------------------------AACAACAGCAGCAGCA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000100
....................................................................................................................................................ACAACAGCAGCAGCA---ACA--------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.1011000000
.......................................................................................................................................................ACAGCAGCAGCA---ACA--------------------------------------------------------TCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100

Generated: 05/17/2015 at 05:03 AM