ID:

dvi_14401

 Coordinate:

scaffold_13042:2311248-2311334 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.6 -4.4 -4.3

Flybase annnotation

CDS [Dvir\GJ15677-cds]; CDS [Dvir\GJ15677-cds]; exon [dvir_GLEANR_16117:2]; exon [dvir_GLEANR_16117:3]; intron [Dvir\GJ15677-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
  1. scaffold_4048:629-649 +
  2. scaffold_4049:302-322 -
  3. scaffold_9467:4771-4791 +
  4. scaffold_9769:2490-2510 +
  5. scaffold_9769:4644-4664 +
  6. scaffold_10291:242-262 -
  7. scaffold_10358:4211-4231 -
  8. scaffold_12318:66-86 +
  9. scaffold_12823:8705-8725 +
  10. scaffold_12855:894899-894919 -
  11. scaffold_12856:3653-3673 -
  12. scaffold_12856:7844-7864 -
  13. scaffold_12875:5444050-5444070 +
  14. dvi_11025  scaffold_12963:8875332-8875352 +
  15. scaffold_12963:17509123-17509143 +
  16. dvi_14401  scaffold_13042:2311278-2311298 -
  17. scaffold_13047:13397074-13397094 -
  18. scaffold_13049:9409253-9409273 -
  19. scaffold_13049:16409305-16409325 +
  20. scaffold_13052:1856128-1856148 -
  21. scaffold_13052:1849932-1849952 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------##################################################
CACAGGGCGAAATACATAGAATAAGTCCAATTCCATTGAATAAGACTGAGGTCATGCCGAACCCAACGCCAGCAACAGCAGCAGCAGCAGCATCAGCAACAGCAACAATAACAACAACAAACAGTGTACAACAACAGCAACAACATTCCACAGCCAATGGCAGTTTAGCGCTCGCACTTAAACCAAC
**************************************************....(((.((.......((..((.......)).)).......)).))).......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 M047
female body
 V116
male body		 SRR060676
9xArg_ovaries_total
 M061
embryo
 SRR060680
 9xArg_testes_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060665
9_females_carcasses_total
 SRR060655
9x160_testes_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
...............................................................................................................................................CATACCACAGCCAATGGCAGT....................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ACAGTGTACAACAACAGCAACAAC........................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCAACAACATTCCACAGCCAAT............................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AACAACATTCCACAGCCAATGGCAGT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TCATGCCGAACCCAACGCTTT................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATAGTGTACAACAACAACAACAATATT........................................ 27 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AATTCCACGGAATAAGATTG........................................................................................................................................... 20 3 6 0.33 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATTCCACGGAATAAGATTG........................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
......................................................................................GCAGCATCAGCAACAGCAACA................................................................................ 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0
............................................................................AGCAGCAGCAGCAGCATCAG........................................................................................... 20 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTACAACAACAGCAACAA............................................ 18 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................AGCAACAGCAGCAGCAGCAGCAT.............................................................................................. 23 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................CAACAGCAACAATAACAACAACAA................................................................... 24 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGCCAGCAACAGCAGCAGC...................................................................................................... 19 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CAGCAGCATCAGCAACAGCAACA................................................................................ 23 0 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CAGCAGCATCAGCAACAGCAAT................................................................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................CAGCAGCAGCAGCAGCATCAGCA......................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................CAACAGCAGCAGCAGCAGCATCA............................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................AATTCCACGGAATAAGATT............................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAGCAACAGCAGCAGCAGCAGCATCA............................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................CCAGCAACAGCAGCAGCAGCAGCA............................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................AGCATCAGCAACAGCAACA................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CAACAGCAACAATAACAACAAC..................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................AGCAGCATCAGCAACAGCA................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GCAGCAGCAGCAGCATCAGCA......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTGTCCCGCTTTATGTATCTTATTCAGGTTAAGGTAACTTATTCTGACTCCAGTACGGCTTGGGTTGCGGTCGTTGTCGTCGTCGTCGTCGTAGTCGTTGTCGTTGTTATTGTTGTTGTTTGTCACATGTTGTTGTCGTTGTTGTAAGGTGTCGGTTACCGTCAAATCGCGAGCGTGAATTTGGTTG
**************************************************....(((.((.......((..((.......)).)).......)).))).......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 GSM1528803
follicle cells		 SRR060689
160x9_testes_total
 SRR060664
9_males_carcasses_total
..................CTTATTCAGGTTAAGGTAACTTATT................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................GTAGTCGTTGTCGTTGTTAT............................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
......................................................ACGGCTTGGGTTGCGGTCGTTG............................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................CGTTGTTGTAAGGTGTCGGT............................... 20 0 1 1.00 1 1 0 0 0 0 0
.....CCGCTTGATGTATCTTATC................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0
.....................................................................................................CGTTGTTATTGTTGTTGTT................................................................... 19 0 20 0.10 2 0 0 0 0 2 0
...............................................................TTTGCGGTCGTGGTCGTCGTC....................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 1
...................................................................................................GTCGTTGTTATTGTTGTTG..................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................GTTGTCGTTCTTTCAAGGTGT................................... 21 3 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:2311198-2311384 - dvi_14401 CACAGG---------------G---------------------------C------------------------------------GA-------------AATACATAGAATAAGTCCAAT------TCCATTGAATAAG-------------------------------A-------CTGA---G-------------------------------------------------G---------------------------------------------------------TCATGCCGAACCCAAC------G--------------------------CCAGCAACAGCAGCA---------------GCAGCAGCA------TCAGCAACAGCAA------------------------------------CAAT------------AACAACA---------------------ACAA------------------------ACAGTGTACAA-----------------------CA---ACA------------------G------------------------------------------CAACAACATTCCACAGCCAATGG-CAGTTTAGCGCTCGCACTTA-----------------------------------AACCAAC
droMoj3 scaffold_6680:20632431-20632617 + CAAAGC---------------CGAGCCATAAACAATATCCAATTTCTGGCCACAGAATA------------CTAATTAAAT-TACG-------------------------------------CAAAA-AA----------GGC--------------------------------------------------------------------------------------------------------------------------------------------------------A---G---CAACAGC------A--------------------------GCAGCAACAGCAACA---------------GCAACAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAG------------CAGC---A---------GCAGCCTGTTAAAAGTGAAGTG--CAA------------------------------------------------------AGCA-----------------------------------------GCAGCAGCAGCAA-----------------------------------CAGCAGC
droGri2 scaffold_15203:5143697-5143868 - CACGTG---------------G---------------------------C------------------------------------GA-------------AATACATAGAATAAGTCCAAT------TCCATTGAATAAG-------------------------------A-------CTGA---G-------------------------------------------------G---------------------------------------------------------CCATGCCCAACTCAATGCCAACAGCATCAACAATCACTGT------------------------------------------------------ACAACAACAGCAA---------------------------------------------------------CA------GCA------GCAGCCGCAACAACA---ACG-------------------------------------------------------------------------------------------------------------------------ACATTCCACTGTTAACAG-CAGCTTATCTGTTGTACTCA-----------------------------------AGCCAAC
droWil2 scf2_1100000004762:4956575-4956772 - CCCAGT---------------G---------------------------G--C---------------------------------AATGCTGTTGATCACTAT-----GAACAGA------------TGC----------AACAACA-------------------------------T---A------------ATAGCAATTCATCG---------------------CTTACAG---CA--------------------------------------------GC-----------CGCACAACAAC------A--------------------------GCAGCAACAACAGCA---------------GCAGCAACA------ACAGCAGCAGCAACAACAGCAA------------------------------------------------CA---------------------GCAACAT------------CATCAACA----------------------------------------ACA------------AC------------------------------AACAACACCAACAGCA------GCA---------------A-----------TCGCAAC----------------ACAGCCTC--TTAAA------TAATAAT
dp5 XR_group6:7802602-7802766 - CAATGG---------------C----------------------------------------------------------------GA-------------CGT-----TA-AAAGTCCACC------AGCAACGAACATG-------------------A----TAACTAA-------G---------------------------ATCCA---------TCAAAGG-----------------------------------------------------------C--------C---T---CCACAGC------A--------------------------GCAGCAGCAGCATCA---------------GCAGCAGCA------GCAGCACCAGCAC---------------------------------------------------------CA------GCA------GCAGTCGCATCAACA---CCA-------------------------------------------------------------------GC------------------------------ATCCACACCAGCAACA------GCA---------------T-----------TCGCACCCA-----------------------------------CACCA--
droPer2 scaffold_2:5826735-5826925 - CACTGC---------------A---------------------------A--CAA----------------AT--------------GTGACGTCGACAAGTGC----TGATAAAA------------TGC----------AAATG----------------------------------CAAATGAAGCAACG-------------------------------------CCAGCAGAAGCAGC------------------------AGCA---------------------------------GCAAC------A--------------------------GCAGCAGAAACAGCA---------------GCAGCAGCA------ACAGCAGCAACAA---------------------------------------------------------CAGCAACAGCA------GCAACAGCAGCAACA---GCAACAGCAG----------------------------------------CAACAGC---------------------------------------------AACAGCA-----------------------------------------GCAGCAGCAACAA-----------------------------------CAGCAAC
droAna3 scaffold_13088:432967-433175 - TACCAG---------------C----------------------------------------------------------------------------------------------------------AGC----------AGCAACATCATCTCAGTCAGCTTCTC-----T-CC----------------------------TTGCCCAGCATGACCCACC-------------------------------------------------AGCA------GCA----------TCATCC--CCAACAGC------A--------------------------GCAGCATCAGCAGCA---------------GCAGCAGCA------GCAGCAGCAGCAACAGCAGCAA------------------------------------------------CA---------------------GCAACAT------------CAGCAGCA----------------------------------------GCA------------------G---------------------------GAGCA------GCTGCAGCAGCA-TCCACAGTTGGCGC-TGGGTGAGCTGTCGGACTTC------------------------GGGCTG-------GATGC
droBip1 scf7180000396022:3996-4150 - GGCGGC---------------A--A---------------------------CTGG---GAATGC------------------------------------------CA-----------AT------GGC---------------------------------------------------------------------------------------------------------------------AAT------------------------GGCAATGCCACAAC-----------C-------AAC------A--------------------ACAACAACAACA---------------------------ACAACA------ACAGCAGTAGCAA------------------------------------CAATAACAACAACAACAATAACAAC---------------------------------------------AACAATT-------------------------------------------------------------------GCGGACGCAGTAGCAGTCGCA-----------------------------------------GCAGCAGCAGTT-------------CGCAA------------------AGCTCGC
droKik1 scf7180000302441:2840131-2840307 - CTCAAA---------------A---------------------------------------------------------------------------------TCCCCAGAGTCAGAACGTT------TATGTTG----TG-------------------------------AATCAGA-CTAA--------------------------------------------------------------------------------------------------------------------CATTTCCCAAC------A--------------------------ACAGCAGCAGCAGCA---------------GCAACAGCAACTAGTGCAGCAGCAGCAG---------------------------------------------------CAACAACAAC---AGCAAATGTTGCA------GCAGCAGCAGATTATGCCA----------------------------------------CAGCAGC---------------------------------------------AGCAGCA-----------------------------------------GCGTATGCAAATG-----------------------------------CAGCAGC
droFic1 scf7180000454073:258828-259035 + TTCATG---------------G---------------------------CAAATGGTGG------------CTTGCCCAATATACG-------------------------------------AGAGA-AT----------GGCAA-----------------------------------------------------------------------------------------------CGGTCACAAT------------------------GG-----------------------CGAATCGCAAC------A--------------------------GCAGCAGCAGCAGCA---------------GCAACAACA------ACAGCAGCAGCAA------------------------------------CAGC---------AACAA---CA---------------------GCAGCAG------------CAG---------AC---GAATCATGGTGGTTTTATGGTGACCACA---ACG------------AC------------------------------GACGACACCGCCGGCT------GCA---------------GTGGCGGTTCCCCTCCAGCCC-----------------------------------CTCCAGC
droEle1 scf7180000491214:2315518-2315690 - CGCAGG-CCCTTGGCAGC---A--A----------------------------------------------TTCGCCC-----------------------------AAGAGCAAT------------TGC----------AGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC------A--------------------------GCAGCAGCAGCAGTAGTAGCAGCAGCAGCAGCATCAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAACA---GCAGCATCAG----------------------------------------CAGCAGCAACAGCAACGCCAGCGATC--------------------------A-------------------------------------------------G--CCCACTCA-----------------------------------CAGCAAC
droRho1 scf7180000779097:110293-110472 - CCCACG---------------A--A---------------------------C---------------------------------------------------------CGTGAGCCGAAT------CC-----------------------------------TGGCCCA-------G---------------------------GATGG---------CGTGGTGCCGCC--------------CAAC------------------------GGTGGACCTCCGAC-----------TACGCCCCAGC------A--------------------------GCAGCAACAGCAGCA---------------GCAGCAGCA------ACAGCAGCAACAG------------------------------------C------------AACAACAACAGC---------------------------------------------AACAGGCGTCGAA-----------------------CG---GCG------------------G------------------------------------------CAACAGCAATGC------------------CACGCCCGCACAAA-----------------------------------GTCCGAC
droBia1 scf7180000302075:432062-432229 + GTGAAGTATCCCTAAAGCGCTC--A----------------------------------AAGCAA------------------------------------------CA-----------GT------GAC------------------------------------------------------------------------------------------------------AGCAG------------------------------------------------------------------CAACAAC------A--------------------------GCAGCAACAGCAATA---------------GCAGCAGCA------TCAGCAGCAGCAG------------------------------------CAA------------CAACAACAGCAACAGCAATAGTAATA---GCAGCAGCA---GCAGCAGCAG----------------------------------------CAGCAAC---------------------------------------------AGCAGCA-----------------------------------------GCAGCAGCAACAG-----------------------------------CAGCAAC
droTak1 scf7180000415211:144090-144247 + CATCAG---------------T---------------------------C------------------------------------GA-------------TAT-----GAACAAA------------TAC----------AACTA---------------------------------------------------CAAATACTCGTCGGG---------CAAGATA-----------------------------------------------------------TA-----------CGGA------TGCCGACGTCAGCAGCAAGCAA------------------------CCA---------------ACATCGGCA------ACAGCAACAGCAA---CAGTAATAGCAACATCAACCTATT--------------------------------------------------------------------------------------------------------------------G---GC---------------------------------------------------------------------------------------------------------------AAGGACTC---AGCCTCAACTATG------CAACAGC
droEug1 scf7180000409555:694354-694536 + CAGAGG---------------G---------------------------C------------------------------------CA-------------ACTTCCCAGAGCAGCCACA-TAAAA---CC-ATGAACATG-------------------A----TGGACAT-------G---------------------------GCAGA---------TGTGATG-----------------------------------------------------------AG-----------CAAA------TACCAGCA--------------------------GCAGCA------------------------------GAA------ACAGCAGCAGCAGCAGCAGCAA------------------------------------------------CA---------------------GCAACAG------------CGCCAGCA----------------------------------------GCC------------------A------------------------------------------CAGCAGCAACATGCAA-------------------------C--ACAGAAAGGACTCGAGGGCCTC--CTATT------AACCAAC
dm3 chr3R:26186635-26186826 + CAGAGG---------------G---------------------------G------------------------------------CA-------------ACTTCCCTCAACAGTCCCA-TAAAA---CC-ATGAACATG-------------------A----TGGCCAT-------G---------------------------GCGGA---------TGTGATG-----------------------------------------------------------AG-----------CAAG------TACCAGCA--------------------------GCAGCA---------------------------GCACCA------ACAGCAGCAGCAA------------------------------------CAGC---------------------------G------CCAGCAGCAACAC------------AACCTGCA----------------------------------------GCC------------------A------------------------------------------CAGCAGCAACATGCAA-------------------------C--GCAGAAAGGACTCGAGGGCCTT--CTATTGACCAACACAAAC
droSim2 2l:6237937-6238137 - CATGGC---------------G-----------------------------------------------------------------G-------------AGCCCATGGAGGAGGACCAGC------TCCATCGCATTGC-------------------------------A-CCATG-CTCACGTAACACCGCCGCGGAGGCTC---------------------------------------------------------------AGCA---------------------------------ACATG------C------ACAGCCATCGTGCATCAGCAGCAGCG---------------------------ACGGCA------GCTGCAACAGCAA------------------------------------CAAC---------------------------T------GCAGCAGCAACAA------------GTGCAGCA----------------------------------------GCA------------------A------------------------------------------CATCAGCGGTGCGCAGCCAACAA-CTCTGGAGTCTTTGCGC-------------------------------------------TT
droSec2 scaffold_15:1216890-1217090 - CAAAGC---------------G------------------------------------------------------------------------------------------------------------C----------AGCAA-----------------------------------------------------------------------------------------------CAGCAACAAAGGCAACACTAAAACTAACAGCA---------GCAAC------------ACCAATTGCAAC------T--------------------------GCAGCACCAGCAGCA---------------GCAGCAGCA------TCAACAACAACAACAACA---------------GCCAAGCGGCGGCAAG--T------------------CA---------------GCAGCA-------------------------------------------------------------------GCAACAAGAACACCAGCAATCACAAAAACAACAGCAAACGCT---GCAGTCGCA-----------------------------------------GCAGCAGCAGTCG-----------------------------------CAGCAGC
droYak3 X:17970436-17970590 + AACACA---------------A--A----------------------------------AAGTTTCAACTC-------CAT-------------------------A--------------------------TGGAGGAG-------------------------------A-------AAGA---A-------------------------------------------------G---CTGC-------------------------------------------------------CACATCGTAGT------A--------------------------GCAGCAGAAGCAGCA---------------GCAGCAGCA------ACAGCAACAGCAACAGCAGCAA------------------------------------------------CA---------------------GCAACAG------------CAACAGCA----------------------------------------ACA------------------G------------------------------------------CAGCAGCAAAACGCAA------------------TTAGCAGTAG-----------------------------------TTACAAC
droEre2 scaffold_4784:3532092-3532273 + AACAAT---------------A--A----------------------------------------------------------------------------CATACTCA-----------AT------CAC----------AACAA-----------------------------------------------------------------------------------------------------------------------TCTCAATA---------TCATTATCAATAACCATGCCTCCCTCAAC------A--------------------------ACAACAGCAGCAATA---------------ATAATAACA------ACAACAATAACAA------------------------------------C------------AATAATAACAAC---------------------------------------------AACAATC---CAG-----------------------CC---ACA---------CCAAA--------------------------TGCCAATCTGGCGGC------CAGCAACAATGC------------------CACGCCCACAGTGA-----------------------------------ACACCGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CACAGG---------------G---------------------------C------------------------------------GA-------------AATACATAGAATAAGTCCAAT------TCCATTGAATAAG-------------------------------A-------CTGA---G-------------------------------------------------G---------------------------------------------------------TCATGCCGAACCCAAC------G--------------------------CCAGCAACAGCAGCA---------------GCAGCAGCA------TCAGCAACAGCAA------------------------------------CAAT------------AACAACA---------------------ACAA------------------------ACAGTGTACAA-----------------------CA---ACA------------------G------------------------------------------CAACAACATTCCACAGCCAATGG-CAGTTTAGCGCTCGCACTTA-----------------------------------AACCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTACAA-----------------------CA---ACA------------------G------------------------------------------CAACAAC...............................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------CAACAACATTCCACAGCCAAT.................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACATTCCACAGCCAATGG-CAGT..........................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCATGCCGAACCCAAC------G--------------------------CTTT...............................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------TCAGCAACAGCAA------------------------------------CA...................................................................................................................................................................................................................................................................21200.102000000000000000000000001000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------------GCAGCAGCA------TCAG..................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAA-----------------------CA---ACA------------------G------------------------------------------CAACAA................................................................................18110.091000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA---------------GCAGCAGCA------T.....................................................................................................................................................................................................................................................................................................................23130.081000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA------------------------------------CAAT------------AACAACA---------------------ACAA------------------------.............................................................................................................................................................................................24170.061000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................C------G--------------------------CCAGCAACAGCAGCA---------------GC...................................................................................................................................................................................................................................................................................................................................19190.051000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------TCAGCAACAGCAA------------------------------------CA...................................................................................................................................................................................................................................................................23190.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------TCAGCAACAGCAA------------------------------------T....................................................................................................................................................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---------------GCAGCAGCA------TCAGCA................................................................................................................................................................................................................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA---------------GCAGCAGCA------TCA...................................................................................................................................................................................................................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CCAGCAACAGCAGCA---------------GCAGCAGCA------......................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCA------TCAGCAACAGCAA------------------------------------CA...................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA------------------------------------CAAT------------AACAACA---------------------AC.......................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------TCAGCAACAGCA..........................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------GCAGCAGCA------TCAGCA................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAAAGC---------------CGAGCCATAAACAATATCCAATTTCTGGCCACAGAATA------------CTAATTAAAT-TACG-------------------------------------CAAAA-AA----------GGC--------------------------------------------------------------------------------------------------------------------------------------------------------A---G---CAACAGC------A--------------------------GCAGCAACAGCAACA---------------GCAACAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAG------------CAGC---A---------GCAGCCTGTTAAAAGTGAAGTG--CAA------------------------------------------------------AGCA-----------------------------------------GCAGCAGCAGCAA-----------------------------------CAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................GCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GC......................................................................................................................................................................................................................................20200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--CAA------------------------------------------------------AGCA-----------------------------------------GCAGCAGCAGCA...........................................20130.081000001
.................................................................................................................................................................................................................................................................................................................AACAGC------A--------------------------GCAGCAACAGCAA......................................................................................................................................................................................................................................................................................................................................................20200.051000001
..............................................................................................................................................GC--------------------------------------------------------------------------------------------------------------------------------------------------------A---G---CAACAGC------A--------------------------GCAGCAACAGCAA......................................................................................................................................................................................................................................................................................................................................................25200.051100000
..................................................................................................................................................................................................................................................................................................................................................................CAACA---------------GCAACAGCA------GCAGCAGC..............................................................................................................................................................................................................................................................................................................22200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................GCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------...............................................................................................................................................................................................................................21200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG------------CAGC---A---------GCAGCC...............................................................................................................................................................................22200.051010000
...............................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------------A---G---CAACAGC------A--------------------------GCAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAG------------CAG...................................................................................................................................................................................................24200.051100000
............................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA---------------GCAACAGCA------GCAG..................................................................................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................................................................................................................................................................................ACAGCAACA---------------GCAACAGCA------GC....................................................................................................................................................................................................................................................................................................................20200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------...............................................................................................................................................................................................................................25200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAG------------CA....................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................................................................................................................................................................................ACAGCAACA---------------GCAACAGCA------GCAGC.................................................................................................................................................................................................................................................................................................................23200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------...............................................................................................................................................................................................................................26200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................A------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------GCAGC..........................................................................................................................................................................................................................24200.051100000
droGri2
CACGTG---------------G---------------------------C------------------------------------GA-------------AATACATAGAATAAGTCCAAT------TCCATTGAATAAG-------------------------------A-------CTGA---G-------------------------------------------------G---------------------------------------------------------CCATGCCCAACTCAATGCCAACAGCATCAACAATCACTGT------------------------------------------------------ACAACAACAGCAA---------------------------------------------------------CA------GCA------GCAGCCGCAACAACA---ACG-------------------------------------------------------------------------------------------------------------------------ACATTCCACTGTTAACAG-CAGCTTATCTGTTGTACTCA-----------------------------------AGCCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GCAGCCGCAACAACA---AC...........................................................................................................................................................................................................2070.14110
droWil2
CCCAGT---------------G---------------------------G--C---------------------------------AATGCTGTTGATCACTAT-----GAACAGA------------TGC----------AACAACA-------------------------------T---A------------ATAGCAATTCATCG---------------------CTTACAG---CA--------------------------------------------GC-----------CGCACAACAAC------A--------------------------GCAGCAACAACAGCA---------------GCAGCAACA------ACAGCAGCAGCAACAACAGCAA------------------------------------------------CA---------------------GCAACAT------------CATCAACA----------------------------------------ACA------------AC------------------------------AACAACACCAACAGCA------GCA---------------A-----------TCGCAAC----------------ACAGCCTC--TTAAA------TAATAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAGCA------GCA---------------A-----------TCGCA..............................................2111.00100001
.....T---------------G---------------------------G--C---------------------------------AATGCTGTTGATCACTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------CA---------------------GCAACAT------------CATCAACA----------------------------------------ACA------------A......................................................................................................................................2620.50101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------CA---------------------GCAACAT------------CATCAACA----------------------------------------ACA------------.......................................................................................................................................2240.25101000
................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA------------------------------------------------CA---------------------GCAACAT------------CA....................................................................................................................................................................................................2290.11101000
..................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------GCAGCAACA------ACAGCA................................................................................................................................................................................................................................................................................................................20200.10202000
......................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCA.................................................................................................................................................................................................................................................................................................20200.10202000
.................................................................................................................................................................................................................................................................................................................................................................ACAGCA---------------GCAGCAACA------ACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................27190.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------AC------------------------------AACAACACCAACAGCA------GC...............................................................................22190.05101000
..................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------GCAGCAACA------ACAGCAG...............................................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACCAACAGCA------GCA---------------...............................................................19200.05100100
.....................................................................................................................................................................................................................................................................................................................AC------A--------------------------GCAGCAACAACAGCA---------------GCA..................................................................................................................................................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................................................................................................................................................................AGCA---------------GCAGCAACA------ACAGCAGCA.............................................................................................................................................................................................................................................................................................................22200.05100010
..................................................................................................................................................................................................................................................................................................................ACAAC------A--------------------------GCAGCAACAACAGCA---------------GC...................................................................................................................................................................................................................................................................................................................................23200.05100010
................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------------GCAGCAACA------ACAGCAGCA.............................................................................................................................................................................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................................ACAGCA---------------GCAGCAACA------ACAGCAGCA.............................................................................................................................................................................................................................................................................................................24200.05100010
.................................................................................................................................................................................................................................................................................................................AACAAC------A--------------------------GCAGCAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................21200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................A------ACAGCAGCAGCAACAACAGCAA------------------------------------------------CA---------------------.........................................................................................................................................................................................................................25200.05100100
dp5
CAATGG---------------C----------------------------------------------------------------GA-------------CGT-----TA-AAAGTCCACC------AGCAACGAACATG-------------------A----TAACTAA-------G---------------------------ATCCA---------TCAAAGG-----------------------------------------------------------C--------C---T---CCACAGC------A--------------------------GCAGCAGCAGCATCA---------------GCAGCAGCA------GCAGCACCAGCAC---------------------------------------------------------CA------GCA------GCAGTCGCATCAACA---CCA-------------------------------------------------------------------GC------------------------------ATCCACACCAGCAACA------GCA---------------T-----------TCGCACCCA-----------------------------------CACCA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................TA-AAAGTCCACC------AGCAACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..............................................................................................................A-AAAGTCCACC------AGCAACGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCATCAACA---CCA-------------------------------------------------------------------GC------------------------------AT.....................................................................................................1911.0010100000000
CAATGG---------------C----------------------------------------------------------------GA-------------CGT-----TA-AAAGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................ATCA---------------GCAGCAGCA------GCAGCACCAG............................................................................................................................................................................................................................................................................................................2380.1310100000000
.....................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCA------GCAGCACCAGCAC---------------------------------------------------------................................................................................................................................................................................................................................................2490.1110010000000
.............................................................................................................................................................................................................................................................................................................................A--------------------------GCAGCAGCAGCATCA---------------GCAGCA...............................................................................................................................................................................................................................................................................................................................22200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................CAGCATCA---------------GCAGCAGCA------GCAG..................................................................................................................................................................................................................................................................................................................21200.1020200000000
.............................................................................................................................................................................................................................................................................................................................A--------------------------GCAGCAGCAGCATCA---------------GCAGCAG..............................................................................................................................................................................................................................................................................................................................23200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................CAGCATCA---------------GCAGCAGCA------GCAGCAC...............................................................................................................................................................................................................................................................................................................24110.0910100000000
...............................................................................................................................................................................................................................................................................................................................................................CAGCATCA---------------GCAGCAGCA------GCAGC.................................................................................................................................................................................................................................................................................................................22200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCA---------------GCAGCAGCA------GCAG..................................................................................................................................................................................................................................................................................................................26200.0510100000000
.............................................................................................................................................................................................................................................................................................................................A--------------------------GCAGCAGCAGCATCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................CAGC------A--------------------------GCAGCAGCAGCATCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................25200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCATCA---------------GCAGCAGCA------GC....................................................................................................................................................................................................................................................................................................................25200.0510010000000
..................................................................................................................................................................................................................................................................................................................ACAGC------A--------------------------GCAGCAGCAGCATCA---------------.....................................................................................................................................................................................................................................................................................................................................21200.0510000000001
..........................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCA---------------GCAGCAGC.............................................................................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................CAGC------A--------------------------GCAGCAGCAGCATCA---------------.....................................................................................................................................................................................................................................................................................................................................20200.0510000100000
..................................................................................................................................................................................................................................................................................................................ACAGC------A--------------------------GCAGCAGCAGCATC.....................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
droPer2
CACTGC---------------A---------------------------A--CAA----------------AT--------------GTGACGTCGACAAGTGC----TGATAAAA------------TGC----------AAATG----------------------------------CAAATGAAGCAACG-------------------------------------CCAGCAGAAGCAGC------------------------AGCA---------------------------------GCAAC------A--------------------------GCAGCAGAAACAGCA---------------GCAGCAGCA------ACAGCAGCAACAA---------------------------------------------------------CAGCAACAGCA------GCAACAGCAGCAACA---GCAACAGCAG----------------------------------------CAACAGC---------------------------------------------AACAGCA-----------------------------------------GCAGCAGCAACAA-----------------------------------CAGCAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------------AACAGCA-----------------------------------------GCAGCAGCAACA...........................................21200.051001000
droAna3
TACCAG---------------C----------------------------------------------------------------------------------------------------------AGC----------AGCAACATCATCTCAGTCAGCTTCTC-----T-CC----------------------------TTGCCCAGCATGACCCACC-------------------------------------------------AGCA------GCA----------TCATCC--CCAACAGC------A--------------------------GCAGCATCAGCAGCA---------------GCAGCAGCA------GCAGCAGCAGCAACAGCAGCAA------------------------------------------------CA---------------------GCAACAT------------CAGCAGCA----------------------------------------GCA------------------G---------------------------GAGCA------GCTGCAGCAGCA-TCCACAGTTGGCGC-TGGGTGAGCTGTCGGACTTC------------------------GGGCTG-------GATGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGC-TGGGTGAGCTGTC.................................................2112.002010001
...........................................................................................................................................................AGTCAGCTTCTC-----T-CC----------------------------TTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGCGC-TGGGTGAGC.....................................................1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTTGGCGC-TGGGTGAGC.....................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAA------------------------------------------------CA---------------------GCAACAT------------CAGC..................................................................................................................................................................................................2911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------GCAACAT------------CAGCAGCA----------------------------------------GCA------------------G---------------------------GAGCA------GCG.......................................................................................2811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGAGCTGTCGGACTTC------------------------GGGCTG-------.....2611.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------CA---------------------GCAACAT------------CAGCAGCA----------------------------------------GCA------------------G---------------------------GAGC.................................................................................................2611.001000001
..............................................................................................................................................................CAGCTTCTC-----T-CC----------------------------TTGCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------G---------------------------GAGCA------GCTGCAGCAGCA-TCCACA.......................................................................2711.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-TGGGTGAGCTGTCGGACTTC------------------------GG................2411.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGCGC-TGGGTGAGCT....................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGCGC-TGGGTGAGCTGTC.................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------G---------------------------GAGCA------GCTGCAGCAGCA-TCCAC........................................................................2611.001010000
................................................................................................................................................................................................................................................................................................................CAACAGC------A--------------------------GCAGCATCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................2290.222000002
....................................................................................................................................................................................................................................................................................................................AGC------A--------------------------GCAGCATCAGCAGCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................2480.131010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------------------------------------------------CA---------------------GCAACAT------------CAGCAGCA----------------------------------------......................................................................................................................................................2590.111000001
................................................................................................................................................................................................................................................................................................................CAACAGC------A--------------------------GCAGCATCAGCA.......................................................................................................................................................................................................................................................................................................................................................20200.102000011
..................................................................................................................................................................................................................................................................................................................ACAGC------A--------------------------GCAGCATCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................20110.091000001
......................................................................................................................................................................................................................................................................................................................C------A--------------------------GCAGCATCAGCAGCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................22160.061010000
....................................................................................................................................................................................................................................................................................................................................................................GCA---------------GCAGCAGCA------GCAGCAGCAG............................................................................................................................................................................................................................................................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................18200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAA------------------------------------------------CA---------------------GC.......................................................................................................................................................................................................................21200.051010000
.............................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCA---------------GCAGCAGCA------GCAGCAT...............................................................................................................................................................................................................................................................................................................26200.051010000
...............................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---------------GCAGCAGCA------GCAGCAGC..............................................................................................................................................................................................................................................................................................................25200.051100000
droBip1
GGCGGC---------------A--A---------------------------CTGG---GAATGC------------------------------------------CA-----------AT------GGC---------------------------------------------------------------------------------------------------------------------AAT------------------------GGCAATGCCACAAC-----------C-------AAC------A--------------------ACAACAACAACA---------------------------ACAACA------ACAGCAGTAGCAA------------------------------------CAATAACAACAACAACAATAACAAC---------------------------------------------AACAATT-------------------------------------------------------------------GCGGACGCAGTAGCAGTCGCA-----------------------------------------GCAGCAGCAGTT-------------CGCAA------------------AGCTCGCSizeHit CountTotal NormTotal
No Reads
droKik1
CTCAAA---------------A---------------------------------------------------------------------------------TCCCCAGAGTCAGAACGTT------TATGTTG----TG-------------------------------AATCAGA-CTAA--------------------------------------------------------------------------------------------------------------------CATTTCCCAAC------A--------------------------ACAGCAGCAGCAGCA---------------GCAACAGCAACTAGTGCAGCAGCAGCAG---------------------------------------------------CAACAACAAC---AGCAAATGTTGCA------GCAGCAGCAGATTATGCCA----------------------------------------CAGCAGC---------------------------------------------AGCAGCA-----------------------------------------GCGTATGCAAATG-----------------------------------CAGCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
TTCATG---------------G---------------------------CAAATGGTGG------------CTTGCCCAATATACG-------------------------------------AGAGA-AT----------GGCAA-----------------------------------------------------------------------------------------------CGGTCACAAT------------------------GG-----------------------CGAATCGCAAC------A--------------------------GCAGCAGCAGCAGCA---------------GCAACAACA------ACAGCAGCAGCAA------------------------------------CAGC---------AACAA---CA---------------------GCAGCAG------------CAG---------AC---GAATCATGGTGGTTTTATGGTGACCACA---ACG------------AC------------------------------GACGACACCGCCGGCT------GCA---------------GTGGCGGTTCCCCTCCAGCCC-----------------------------------CTCCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
CGCAGG-CCCTTGGCAGC---A--A----------------------------------------------TTCGCCC-----------------------------AAGAGCAAT------------TGC----------AGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC------A--------------------------GCAGCAGCAGCAGTAGTAGCAGCAGCAGCAGCATCAGCA------GCAGCAGCAGCAA---------------------------------------------------------CA------GCA------GCAGCAGCAGCAACA---GCAGCATCAG----------------------------------------CAGCAGCAACAGCAACGCCAGCGATC--------------------------A-------------------------------------------------G--CCCACTCA-----------------------------------CAGCAACSizeHit CountTotal NormTotal
No Reads
droRho1
CCCACG---------------A--A---------------------------C---------------------------------------------------------CGTGAGCCGAAT------CC-----------------------------------TGGCCCA-------G---------------------------GATGG---------CGTGGTGCCGCC--------------CAAC------------------------GGTGGACCTCCGAC-----------TACGCCCCAGC------A--------------------------GCAGCAACAGCAGCA---------------GCAGCAGCA------ACAGCAGCAACAG------------------------------------C------------AACAACAACAGC---------------------------------------------AACAGGCGTCGAA-----------------------CG---GCG------------------G------------------------------------------CAACAGCAATGC------------------CACGCCCGCACAAA-----------------------------------GTCCGACSizeHit CountTotal NormTotal
No Reads
droBia1
GTGAAGTATCCCTAAAGCGCTC--A----------------------------------AAGCAA------------------------------------------CA-----------GT------GAC------------------------------------------------------------------------------------------------------AGCAG------------------------------------------------------------------CAACAAC------A--------------------------GCAGCAACAGCAATA---------------GCAGCAGCA------TCAGCAGCAGCAG------------------------------------CAA------------CAACAACAGCAACAGCAATAGTAATA---GCAGCAGCA---GCAGCAGCAG----------------------------------------CAGCAAC---------------------------------------------AGCAGCA-----------------------------------------GCAGCAGCAACAG-----------------------------------CAGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
CATCAG---------------T---------------------------C------------------------------------GA-------------TAT-----GAACAAA------------TAC----------AACTA---------------------------------------------------CAAATACTCGTCGGG---------CAAGATA-----------------------------------------------------------TA-----------CGGA------TGCCGACGTCAGCAGCAAGCAA------------------------CCA---------------ACATCGGCA------ACAGCAACAGCAA---CAGTAATAGCAACATCAACCTATT--------------------------------------------------------------------------------------------------------------------G---GC---------------------------------------------------------------------------------------------------------------AAGGACTC---AGCCTCAACTATG------CAACAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CAGAGG---------------G---------------------------C------------------------------------CA-------------ACTTCCCAGAGCAGCCACA-TAAAA---CC-ATGAACATG-------------------A----TGGACAT-------G---------------------------GCAGA---------TGTGATG-----------------------------------------------------------AG-----------CAAA------TACCAGCA--------------------------GCAGCA------------------------------GAA------ACAGCAGCAGCAGCAGCAGCAA------------------------------------------------CA---------------------GCAACAG------------CGCCAGCA----------------------------------------GCC------------------A------------------------------------------CAGCAGCAACATGCAA-------------------------C--ACAGAAAGGACTCGAGGGCCTC--CTATT------AACCAACSizeHit CountTotal NormTotal
No Reads
dm3
CAGAGG---------------G---------------------------G------------------------------------CA-------------ACTTCCCTCAACAGTCCCA-TAAAA---CC-ATGAACATG-------------------A----TGGCCAT-------G---------------------------GCGGA---------TGTGATG-----------------------------------------------------------AG-----------CAAG------TACCAGCA--------------------------GCAGCA---------------------------GCACCA------ACAGCAGCAGCAA------------------------------------CAGC---------------------------G------CCAGCAGCAACAC------------AACCTGCA----------------------------------------GCC------------------A------------------------------------------CAGCAGCAACATGCAA-------------------------C--GCAGAAAGGACTCGAGGGCCTT--CTATTGACCAACACAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
CATGGC---------------G-----------------------------------------------------------------G-------------AGCCCATGGAGGAGGACCAGC------TCCATCGCATTGC-------------------------------A-CCATG-CTCACGTAACACCGCCGCGGAGGCTC---------------------------------------------------------------AGCA---------------------------------ACATG------C------ACAGCCATCGTGCATCAGCAGCAGCG---------------------------ACGGCA------GCTGCAACAGCAA------------------------------------CAAC---------------------------T------GCAGCAGCAACAA------------GTGCAGCA----------------------------------------GCA------------------A------------------------------------------CATCAGCGGTGCGCAGCCAACAA-CTCTGGAGTCTTTGCGC-------------------------------------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA----------------------------------------GCA------------------A------------------------------------------CATCAGCGGAC...........................................................................2270.14110000000000000000
droSec2
CAAAGC---------------G------------------------------------------------------------------------------------------------------------C----------AGCAA-----------------------------------------------------------------------------------------------CAGCAACAAAGGCAACACTAAAACTAACAGCA---------GCAAC------------ACCAATTGCAAC------T--------------------------GCAGCACCAGCAGCA---------------GCAGCAGCA------TCAACAACAACAACAACA---------------GCCAAGCGGCGGCAAG--T------------------CA---------------GCAGCA-------------------------------------------------------------------GCAACAAGAACACCAGCAATCACAAAAACAACAGCAAACGCT---GCAGTCGCA-----------------------------------------GCAGCAGCAGTCG-----------------------------------CAGCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------GCAGCAGCAGTCG-----------------------------------CAGC...18180.0610010
..........................................................................................................................................................................................................................................................................................................................................................AGCACCAGCAGCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................18200.0511000
droYak3
AACACA---------------A--A----------------------------------AAGTTTCAACTC-------CAT-------------------------A--------------------------TGGAGGAG-------------------------------A-------AAGA---A-------------------------------------------------G---CTGC-------------------------------------------------------CACATCGTAGT------A--------------------------GCAGCAGAAGCAGCA---------------GCAGCAGCA------ACAGCAACAGCAACAGCAGCAA------------------------------------------------CA---------------------GCAACAG------------CAACAGCA----------------------------------------ACA------------------G------------------------------------------CAGCAGCAAAACGCAA------------------TTAGCAGTAG-----------------------------------TTACAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................AGCA---------------GCAGCAGCA------ACAGCA................................................................................................................................................................................................................................................................................................................19200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------ACAGCAACAGCAACA.......................................................................................................................................................................................................................................................................................................21200.10201100000000
.............................................................................................................................................................................................................................................................................................................................A--------------------------GCAGCAGAAGCAGCA---------------GCAGCAG..............................................................................................................................................................................................................................................................................................................................23110.09100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------GCAACAG------------CAACAGCA----------------------------------------AC....................................................................................................................................................19200.05100001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------------------------------------------CA---------------------GCAACAG------------CAACA.................................................................................................................................................................................................21200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAA------------------------------------------------CA---------------------G........................................................................................................................................................................................................................23200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................19200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................AGAAGCAGCA---------------GCAGCAGCA------......................................................................................................................................................................................................................................................................................................................19200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAACAGCA----------------------------------------ACA------------------G------------------------------------------CAGCA.................................................................................19200.05101000000000
droEre2
AACAAT---------------A--A----------------------------------------------------------------------------CATACTCA-----------AT------CAC----------AACAA-----------------------------------------------------------------------------------------------------------------------TCTCAATA---------TCATTATCAATAACCATGCCTCCCTCAAC------A--------------------------ACAACAGCAGCAATA---------------ATAATAACA------ACAACAATAACAA------------------------------------C------------AATAATAACAAC---------------------------------------------AACAATC---CAG-----------------------CC---ACA---------CCAAA--------------------------TGCCAATCTGGCGGC------CAGCAACAATGC------------------CACGCCCACAGTGA-----------------------------------ACACCGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/17/2015 at 04:25 AM