dvi_14357

Name	Class	Family	Strand
(ATG)n	Simple_repeat	Simple_repeat	+

GCTCACGGCGACCGCTACTGTCGCTTGTCCCGGTCCTAAGGTTCTTACTCCATTCACGCAGGTTGATCTACTACTTCGCCGTCAACTTCGTTTGCTATCTACTACTACTACTACTACTACTACTAGTACTACTACTAGATCTACAACCTCTACTACTACTCCTTCGTTGTCGTCGTCGCCCGTTATTTCGTCATCTACTTTCTGCTTTGCGTTGTTTGTTTTGACGTTAACTTTACGCTTCCGTTTACGGC ************************************************.........((...............((.((.((((.....((((.(((((.((.((.(((((.((....)).))))).)).)).)))))..)))).........................)))).))..))...............))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060687 9_0-2h_embryos_total	SRR060671 9x160_males_carcasses_total	SRR060656 9x160_ovaries_total	SRR060667 160_females_carcasses_total	SRR060685 9xArg_0-2h_embryos_total	V053 head	M027 male body	M061 embryo	SRR060657 140_testes_total	SRR060659 Argentina_testes_total	SRR060660 Argentina_ovaries_total	SRR060665 9_females_carcasses_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total
...........................................................................................................................................................................................TCGTCAGCTACTTTTTGATTTGC.........................................	23	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTATCAACTACTGCTACTACT........................................................................................................................................	21	2	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ACTACTACTACTACTACTACT...............................................................................................................................	21	0	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATCTACTACTACTACTACTACT.....................................................................................................................................	22	0	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................CTACTACTACTACTACTACT.....................................................................................................................................	20	0	20	0.15	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..........................................................CAGTTTTAGCTACTACTTCGC............................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................TACTACTACTACTACTACT.....................................................................................................................................	19	0	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ACTACTACTAGTACTACTACT...................................................................................................................	21	0	12	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................CTACTACTACTACTACTACTAG.............................................................................................................................	22	0	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................TGCAACCTCTGCTACTAC............................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................TCTACTACTACTACTACT........................................................................................................................................	18	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ACTACTACTACTACTACT...............................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................CCTCCGTTCTCGTCGTCGC........................................................................	19	2	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................ACTACTACTACTACTACTACTACT...............................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................ACCACTACTACTAGTACTACT......................................................................................................................	21	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................TCTACTACTACTACTACTACT.....................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................CTACTACTCGATCCACCAC........................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................CTACTACTACTACTACTACTACT...............................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13042:1982308-1982558 +	dvi_14357	----CG-AGTGCCG---------------------------CTG---------GC------------GAT---GACAGCGAACAGG------G------CCAGGATTCCAAGAATGAGGTAAGT--------G-CGT--CCAACTAGAT------------------------------------GATGAAGCGGCAGTTGAAGCAAACGAT--AGATGATGATGA------T-------------------------------------------GATGATGA------TGATGATCA---TGATGATG------------------AT---------------CT------A------------GA---TGTTGGAGATGA------------------------T------GATGA-GGAAGCAACAGCAG---------------CAGCGGG--CAATAA-------------------------------AGCAGTAGATGAA------------------------AGAC-----------GAA------ACGCAACAAACAA---AACTGCAA-TTGAAATGCGAAG--------GCAAATGCCG
droMoj3	scaffold_6359:1883719-1883972 +	dmo_556	----CA-AGTGCCG---------------------------CTG---------GC------------GAT---GACAGCGAGCAGG------GCCACGGCCAGGACTCTAAGCATGAGGTAAGTG-------------CCCAACTAGC------------------------------TGCAGTTGA---------TGATGAT---------GATGAT------GATGATGATGATGATGATGAAGCAGCTTAACA-------------------------------------------------------------------------------------------AGCTATAGTTC---------------------------ACAAT---------------------------GA-------TG---------ATGATGGT---------GA--------TGATGAAGGCGCAACAGCGAAAAGATGACAAAGTGCTTGATGAA------------------------CGAA-----------GCT------GCGCGATGAA--AAACTTCCCCCATTTGAAATTCGGAG--------GCAAATGTTG
droGri2	scaffold_14853:3321280-3321495 +		----CA-AATGCCA---------------------------CTG---------GC------------GAT---GACAGCGAGCAGG------GTCAGGGCCCGGACTCCAAGAATGAGGTAAGTA-------------CTCAATTAGAT------------------------------------GA---------TGAAGAATAA------------------------------------------GCCAAACGAATACTAGTTGATGCGGAT-GATAATGA------TGTTGATCA------------------------------------------------TGATGAA---------------------------------------------------------------------------------------------------------------------------TCA-TAAGTAAATGATAAAGTAATAGTTGAA------------------------TGAA-----------GAA------ACGCAACAA------TAACTTCAATTTGAATTTTGGAG--------ACGAATGCCG
droWil2	scf2_1100000004558:188587-188753 +		----AT-GGTGACG---------------------------AAG------ATGAC---CAA------GAC---GAGGACGAAG---------------------------ACAATGGGGA--------TAATAATGAC-----GACGAC------------------------------------GATGAAGAAGATGAAGAAGATAATAATGAAGAC------GATAATGATGAGGAA-------------------------------------GATGAAGAAGATAATGATGAGGA------------------------------------------------------AGATG---------------------------AAGAT-------------------------------------------G---------------AAGATAA--CGATGA-------------------------------AGATGAAGATGAA--------------------------------------------------------------------------------------------------------
dp5	2:16808223-16808379 -		----GC-C--------------------------------GG------------CGATGATGATGATGG------------------------TGAAGGCAACGGCCCAGCGAATGAGCAACGTG-------------C-----------------CCGACGACAACTGGGACGACAATGAA---------------GGCGACGAC---------AAC------------GACAACGA-------------------------------------CGACGGCGAAGATGATGATGACCA---CGATGATG------------------AT---------------GA------T------------GA---TGATGATGATGA------------------------T------GAT----------------------------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------------
droPer2	scaffold_0:3584704-3584863 +		----GC-C--------------------------------GG------------CGATGATGATGATGG------------------------TGAAGGCAACGGCCCAGCGAATGAGCAACGTG-------------C-----------------CCGACGACAACTGGGACGACAATGAA---------------GGCGACGACAAC---GACAAC------------------GA-------------------------------------CGACGGCGAAGATGATGATGATCATCGTGGTGATG------------------AT---------------GA------T------------GA---TGATGATGATGA------------------------T------GAT----------------------------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:18390354-18390542 +		----AT-GATGACG---------------------------AAG---------AG------------GAC---AATGATGATG---AAGA---TGAGAACGATGACGAAGGG----------------------------------GGTGACGAAGATGAAGATAATGAAGATGAAGAT------GA---------TGATGAAGATAAT---GAAGAC----------------------------------------------------------------------------G------------------------------------ATGATGATGAAGATGGGGATGAA---------------------------------------------GAAAATGGAGATGAGGATGG-------GG---------ATAACGGTAACGACGATGA--TGATGA-------------------------------GGAGGATGACGAA-------------------------------------------------------------------------------------------------------A
droBip1	scf7180000396735:1662286-1662475 +		----TG-A-CGACG---------------------------A------GAACGAT------------GAG---GACGGGGATGAGGAAGACGATGAAGGC--------------------------------GACGAAG-----------------ATGAAGATAATGAAGATGAAGATGAA---------------GATGACAAT---------GATAAGGATAA-------------------------------------------------TGAAGATGAGGATGATGAAAATCA------------------------------------------------AGATGAA---------------------------------------------GATGATGAAAATGAAGATGG-------GG---------ATGATGCAAATGGAGATGA--GGATGA-------------------------------AGATGAAGATGAA--------------------------------------------------------------------------------------------------------
droKik1	scf7180000302470:178098-178259 -		----TG-G----------------------------------------------GGATGATGAAGAAGAGGATGAGGATGAGG---AAAATGGGGA-----------------------------TGATGAAGAAGAG--------------------------------------------GATGA---------GGATGAGGAAAATGGGGATGAT------GAAAATGATGAGGA-------------------------------------------------------------------A------G------------------ATGATGATGAAGATGAGGATG---------------------AGGATGA------------------------TGAAGAT----------------------GCGAAAGATGATGAAGATGATGAAG-----------AA----------------------------------GA---------------------------------------------------------------------------------------------------------
droFic1	scf7180000450461:940-1086 +		TGATGATGATGATG---------------------------ATG---------GT------------GAT---GATGGTGATGATG------GTGA-----------------------------TGATGATGATGGT--------------------------------------------GATGA---------TGGTGATGAT------------------GATGAT----------------------------------------------------------------GATGA---TGAT------G---------------ATGATGATGGTGATGATGATGATGATGATG------ATGA---------------------------------------T-------------------------GGTGATGATGGTGATGATGGTGATG-----------GT----------------------------------GA---------------------------------------------------------------------------------------------------------
droEle1	scf7180000491272:1225360-1225564 +		----GT-GCTGCTG---------------------------ATGACGATAATG---------ATG---AC---GATGATGATGA------TGATGA-----------------------------TGATGATGAT-----------GAT---------------------------------GATGA---------TGATGATGATGAT---GATGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGATGATGATGATGATGA---------------TGATGATGA---TGATGATGTGGATGATGATGATGATGATGT-------GGATGCTACTGA---------TGATGATGGTGATGC--TGCTGA-------------------------------TGACGATGATGCATGACCGACCAAACT------------------------------------------------------------------------------------------
droRho1	scf7180000777084:3947-4042 +		----AC-GATGATG---------------------------ATG---------------------ATGAT---GA----------------------------------------------------------------------------------------------------------------------------------------------T------GATGATGATGA-------------------------------------------------------TGATGACGA---------------TGATGGCGATAATGAT------------------------------------GA---TGGTGGCAATGA------------------------T------GGCA-GAGCAGCCACAGAAG---------------TAGT----------------------------------------------------AG---------------------------------------------------------------------------------------------------------
droBia1	scf7180000302126:125087-125298 -		----TG-A--------------------------------GG------------TAACCATGACG---AT---CAAGGCGATGA------CGACGA-----------------------------CGACGAC--------------------------------------------------------------------------------AACGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG---------------------ATGATGGTGCCG----GGACGTAGATGAGGACGCTGACGGCGATGATGACGA------------------------T------GGCC-TGGCTGCCGCCGAGGCGAAA----------------------TAC-------------------------------AACTCCAGA------------------------GAAAAGAGGGGCCCAA---GAAATGCAA---------ATGA---------AA-GCGAAATCGAGTCACGCGAAGGC--------
droTak1	scf7180000414058:58677-58774 +		----GT-CCCG--------------------------------------------CATGATGATGA--------------------------------------------------------------------AGAT--------------------------------------------GATGA---------TGATGACGAAGAT---GATGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG------------------AT---------------GA------C------------GA---TGACGACGATGA------------------------T------GATGA-G------------------------------------------------------------------------------------GA---------------------------------------------------------------------------------------------------------
droEug1	scf7180000409776:74981-75085 -		----GA-T--------------------------------GA------------TGATGATGATGATGA------------------------T-------------------------------------------------------------------------------------------------------GATGATGATGAT---GATGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG------------------AT------GATGATGATGA------T------------GA---TGATGATGA---------------------------T------GAT-------------------------------------------------------------------------------GATGTCGGAGCA--------------------------------------------------------------------------------------------------------
dm3	chrX:9234070-9234248 -		----GT-G--------------------------------CA------------GATTGATGATGA-------------------------------------------------------------------------------------------------------------------------------------GCCGGAGAAT---GACGAT----------------------------------------------------------------------------GATGATGATGATGATGATGATGATGATGATGATGAT------------------------------------GA---TGGCTGCATTTG------------------------G------GATA-CGTTTATC-CATTAG--------------------------------------------------------------------------AATTCAACGGCAATCTGGTAAAAGAGAGCCAGCCGAGCCGGAAGGCAA---------AGAG---------CA-TCGTAATGCAGTG--------AGAAATGCCG
droSim2	2r:3483458-3483616 -		----GC-AATGAGAGATTACATAAAAAAAAACTAGAAACTGA------------T------GATG---AT---GAAAATGGGGA-------------------------------------------------------------------------------TAACGAA---------------GATGAAACAGGGGAGAAAGATACTGATAGGGATGACGATGA------CGAGGAT-------------------------------------GA------------TGATGATGA------------------------------------TAATGATGATGA------A------------AA---TGGGGACGA-------------------------------------------------------------CGGG---------GA--------TGACGAA--------------------------------------------------------------------------------------------------------------------------------------------G
droSec2	scaffold_2:3724838-3724973 -		----GC-T--------------------------------AA------------AGCTAATGATGATGAT---GA----------------------------------------------------------------------------------------------------------------------------------------------T------GGTGATGGTGA-------------------------------------------------------TGATGATGA---------------TGATGGCGGTTCTGAT------------------------------------GA---AGATAAAGATCA------------------------T------GATG-TGGATGCCACAAAAA--------------------------------------------------------------------------TGTCCAACAAAAATATAGG-G----GAGGGGAAAAA---AAGATACAA---------AC---------------------------------------------
droYak3	2L:11154765-11154898 -		----GC-C-----------------------------------GGCGAAAGCG---------GCG---AG---GAGGGCGAGGA------TGGCGA-----------------------------TGATACTGAAGAT--------------------------------------------GATGA---------CGATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGACGATGAGGACGACGATG---------------AGGAAGA---TGACGACGAGGAAGACGA------T------GATGA-T------------------------------------------------------------------------------------GA---------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:9102597-9102736 -		----AG-T--------------------------------GCCGGTGAAAGTGGC------------GAC---GAGGGCGAGGA------TGGCGA-----------------------------TGATACTGAAGAA--------------------------------------------GATGA---------CGATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGACGATGAGGACGACGATG---------------AGGAAGA---TGATGACGAGGAAGACGA------T------GATGA-T------------------------------------------------------------------------------------GAA---------------------------------------------------------AC---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

----CG-AGTGCCG---------------------------CTG---------GC------------GAT---GACAGCGAACAGG------G------CCAGGATTCCAAGAATGAGGTAAGT--------G-CGT--CCAACTAGAT------------------------------------GATGAAGCGGCAGTTGAAGCAAACGAT--AGATGATGATGA------T-------------------------------------------GATGATGA------TGATGATCA---TGATGATG------------------AT---------------CT------A------------GA---TGTTGGAGATGA------------------------T------GATGA-GGAAGCAACAGCAG---------------CAGCGGG--CAATAA-------------------------------AGCAGTAGATGAA------------------------AGAC-----------GAA------ACGCAACAAACAA---AACTGCAA-TTGAAATGCGAAG--------GCAAATGCCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................TGATGA------T-------------------------------------------GATGATGA------TGAT..............................................................................................................................................................................................................................................................................................................................	19	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GA------TGATGATCA---TGATGATG------------------AT---------------...........................................................................................................................................................................................................................................................................	21	13	0.38	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
............................................................................................................................................................................................................................TGATGA------T-------------------------------------------GATGATGA------TGATGA............................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TGATGA------T-------------------------------------------GATGATGA------TGATGAT...........................................................................................................................................................................................................................................................................................................................	22	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------TGATGA............................................................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------TGAT..............................................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------TGA...............................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................T-------------------------------------------GATGATGA------TGATGATCA---TGA...................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGA------TGATGATCA---TGATGATG------------------A...........................................................................................................................................................................................................................................................................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------TGATGATCA---......................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GATGA------T-------------------------------------------GATGATGA------TGAT..............................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------TGATGATC..........................................................................................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGATGA------T-------------------------------------------GATGATGA------TGAT..............................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGA------TGATGATCA---TGATGATG------------------AT---------------...........................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TGATGA------T-------------------------------------------GATGATGA------TGATG.............................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATGATGA------T-------------------------------------------GATGATGA------T.................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................A------T-------------------------------------------GATGATGA------TGATGATC..........................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A------TGATGATCA---TGATGATG------------------AT---------------...........................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GATGA------T-------------------------------------------GATGATGA------TGATGATC..........................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGA------TGATGATCA---TGATGAT...............................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ATGA------T-------------------------------------------GATGATGA------TGATGATCA---......................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGATGATCA---TGATGATG------------------AT---------------...........................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................GA------TGATGATCA---TGATGAT...............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GATGATGATGA------T-------------------------------------------GATGATGA------T.................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATGATGA------T-------------------------------------------GATGATGA------TGATG.............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GA------T-------------------------------------------GATGATGA------TGATGAT...........................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................ATGATGATGA------T-------------------------------------------GATGATGA------TGA...............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GATGATGATGA------T-------------------------------------------GATGATG.........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGATGA------T-------------------------------------------GATGATGA------TG................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GA------T-------------------------------------------GATGATGA------TGATGATC..........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................ATGATGATGA------T-------------------------------------------GATGATGA------T.................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGATGA------T-------------------------------------------GATGATGA------TGATGA............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATGATGA------T-------------------------------------------GATGATGA------TGATGAT...........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGA------T-------------------------------------------GATGATGA------TGATGA............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GATGATGATGA------T-------------------------------------------GATGATGA------..................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATGATGATGA------T-------------------------------------------GATGATGA------TGATGA............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................A------T-------------------------------------------GATGATGA------TGATGATCA---......................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GA------TGATGATCA---TGATGATG------------------AC---------------...........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGATGATGATGA------T-------------------------------------------GATGATG.........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGATGATGATGA------T-------------------------------------------GATGATGA------TG................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GATGATGATGA------T-------------------------------------------GATGATGA------TGATG.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGATGA------T-------------------------------------------GATGATGA------TGA...............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGA------T-------------------------------------------GATGATGA------TGATGAT...........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----CA-AGTGCCG---------------------------CTG---------GC------------GAT---GACAGCGAGCAGG------GCCACGGCCAGGACTCTAAGCATGAGGTAAGTG-------------CCCAACTAGC------------------------------TGCAGTTGA---------TGATGAT---------GATGAT------GATGATGATGATGATGATGAAGCAGCTTAACA-------------------------------------------------------------------------------------------AGCTATAGTTC---------------------------ACAAT---------------------------GA-------TG---------ATGATGGT---------GA--------TGATGAAGGCGCAACAGCGAAAAGATGACAAAGTGCTTGATGAA------------------------CGAA-----------GCT------GCGCGATGAA--AAACTTCCCCCATTTGAAATTCGGAG--------GCAAATGTTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................GTTGA---------TGATGAT---------GATGAT------GATGATGA............................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0
........................................................................................................................................................................................................................AT------GATGATGATGATGATGAT..................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................T------GATGATGATGATGATGATGAA...............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
................................................................................................................................................................................................................................GATGATGATGATGATGATGAA...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................GAT---------GATGAT------GATGATGATGAT........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................T---------GATGAT------GATGATGATGATGAT.....................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................TGATGAT---------GATGAT------GATGA...............................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................GTTGA---------TGATGAT---------GATGAT------GAT.................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droGri2

----CA-AATGCCA---------------------------CTG---------GC------------GAT---GACAGCGAGCAGG------GTCAGGGCCCGGACTCCAAGAATGAGGTAAGTA-------------CTCAATTAGAT------------------------------------GA---------TGAAGAATAA------------------------------------------GCCAAACGAATACTAGTTGATGCGGAT-GATAATGA------TGTTGATCA------------------------------------------------TGATGAA---------------------------------------------------------------------------------------------------------------------------TCA-TAAGTAAATGATAAAGTAATAGTTGAA------------------------TGAA-----------GAA------ACGCAACAA------TAACTTCAATTTGAATTTTGGAG--------ACGAATGCCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

----AT-GGTGACG---------------------------AAG------ATGAC---CAA------GAC---GAGGACGAAG---------------------------ACAATGGGGA--------TAATAATGAC-----GACGAC------------------------------------GATGAAGAAGATGAAGAAGATAATAATGAAGAC------GATAATGATGAGGAA-------------------------------------GATGAAGAAGATAATGATGAGGA------------------------------------------------------AGATG---------------------------AAGAT-------------------------------------------G---------------AAGATAA--CGATGA-------------------------------AGATGAAGATGAA--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................ACGAC------------------------------------GATGAAGAAGATGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0
......................................................................................................................................................................................................................................GATGAGGAA-------------------------------------GATGAAGAAGATAAT.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--CGATGA-------------------------------AGATGAAGAT...........................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................ATGATGAGGAA-------------------------------------GATGAAGAA.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................AG------ATGAC---CAA------GAC---GAGGACGAAG---------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................................................AGAAGATGAAGAAGATAATAAT................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................................................AA------GAC---GAGGACGAAG---------------------------ACAATGGGGA--------TAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................ATGAAGAC------GATAATGATGAGGAA-------------------------------------GA..............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............G---------------------------AAG------ATGAC---CAA------GAC---GAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.........................................AAG------ATGAC---CAA------GAC---GAGGACGAAG---------------------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0

dp5

----GC-C--------------------------------GG------------CGATGATGATGATGG------------------------TGAAGGCAACGGCCCAGCGAATGAGCAACGTG-------------C-----------------CCGACGACAACTGGGACGACAATGAA---------------GGCGACGAC---------AAC------------GACAACGA-------------------------------------CGACGGCGAAGATGATGATGACCA---CGATGATG------------------AT---------------GA------T------------GA---TGATGATGATGA------------------------T------GAT----------------------------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................TG------------------AT---------------GA------T------------GA---TGATGATGATGA------------------------T------......................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

----GC-C--------------------------------GG------------CGATGATGATGATGG------------------------TGAAGGCAACGGCCCAGCGAATGAGCAACGTG-------------C-----------------CCGACGACAACTGGGACGACAATGAA---------------GGCGACGACAAC---GACAAC------------------GA-------------------------------------CGACGGCGAAGATGATGATGATCATCGTGGTGATG------------------AT---------------GA------T------------GA---TGATGATGATGA------------------------T------GAT----------------------------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................CAAC---GACAAC------------------GA-------------------------------------CGACGGCG.........................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droAna3

----AT-GATGACG---------------------------AAG---------AG------------GAC---AATGATGATG---AAGA---TGAGAACGATGACGAAGGG----------------------------------GGTGACGAAGATGAAGATAATGAAGATGAAGAT------GA---------TGATGAAGATAAT---GAAGAC----------------------------------------------------------------------------G------------------------------------ATGATGATGAAGATGGGGATGAA---------------------------------------------GAAAATGGAGATGAGGATGG-------GG---------ATAACGGTAACGACGATGA--TGATGA-------------------------------GGAGGATGACGAA-------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................ACGATGACGAAGGG----------------------------------GGTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....AT-GATGACG---------------------------AAG---------AG------------GAC---AATGATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................ATGAAGATAATGAAGATGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GATGAAGATAAT---GAAGAC----------------------------------------------------------------------------G------------------------------------ATGATG...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGG-------GG---------ATAACGGTAAC....................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................G------------------------------------ATGATGATGAAGATGGGGATG....................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................GATGACGAAGGG----------------------------------GGTGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACGATGA--TGATGA-------------------------------GGAGGATGA............................................................................................................	26	1	1.00	1	0	0	0	0	1	0
....................................................................................................GATGACGAAGGG----------------------------------GGTGACGAAGATGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------GAAAATGGAGATGAGGATGG-------G.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................AAGATAATGAAGATGAAGAT------GA---------T...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................GATGATGAAGATGGGGATG....................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................GA---TGAGAACGATGACGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................GATGACGAAGGG----------------------------------GGTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GGGGATGAA---------------------------------------------GAAAATGGAGATGAG......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TGAAGAT------GA---------TGATGAAGATA.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................TGAAGATGGGGATGAA---------------------------------------------GAAA.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................GATGAAGATGGGGATGAA---------------------------------------------GAA..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GGATGG-------GG---------ATAACGGTAACGACG................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GAAGATGAAGAT------GA---------TGATGAAGATAAT---................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................GAAGATGGGGATGAA---------------------------------------------GAA..................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGA--TGATGA-------------------------------GGA..................................................................................................................	18	7	0.71	5	0	0	0	0	2	3
...........................................................................................................................................................................................................GATAAT---GAAGAC----------------------------------------------------------------------------G------------------------------------ATGATGA..................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGA--TGATGA-------------------------------GGAGGAT..............................................................................................................	19	2	0.50	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGA--TGATGA-------------------------------GGAGGAT..............................................................................................................	21	2	0.50	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGAGGATGG-------GG---------A..............................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGA--TGATGA-------------------------------GGAT.................................................................................................................	19	20	0.10	2	0	0	0	0	2	0

droBip1

----TG-A-CGACG---------------------------A------GAACGAT------------GAG---GACGGGGATGAGGAAGACGATGAAGGC--------------------------------GACGAAG-----------------ATGAAGATAATGAAGATGAAGATGAA---------------GATGACAAT---------GATAAGGATAA-------------------------------------------------TGAAGATGAGGATGATGAAAATCA------------------------------------------------AGATGAA---------------------------------------------GATGATGAAAATGAAGATGG-------GG---------ATGATGCAAATGGAGATGA--GGATGA-------------------------------AGATGAAGATGAA--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

----TG-G----------------------------------------------GGATGATGAAGAAGAGGATGAGGATGAGG---AAAATGGGGA-----------------------------TGATGAAGAAGAG--------------------------------------------GATGA---------GGATGAGGAAAATGGGGATGAT------GAAAATGATGAGGA-------------------------------------------------------------------A------G------------------ATGATGATGAAGATGAGGATG---------------------AGGATGA------------------------TGAAGAT----------------------GCGAAAGATGATGAAGATGATGAAG-----------AA----------------------------------GA---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGATGATGATGATG---------------------------ATG---------GT------------GAT---GATGGTGATGATG------GTGA-----------------------------TGATGATGATGGT--------------------------------------------GATGA---------TGGTGATGAT------------------GATGAT----------------------------------------------------------------GATGA---TGAT------G---------------ATGATGATGGTGATGATGATGATGATGATG------ATGA---------------------------------------T-------------------------GGTGATGATGGTGATGATGGTGATG-----------GT----------------------------------GA---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

----GT-GCTGCTG---------------------------ATGACGATAATG---------ATG---AC---GATGATGATGA------TGATGA-----------------------------TGATGATGAT-----------GAT---------------------------------GATGA---------TGATGATGATGAT---GATGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGATGATGATGATGATGA---------------TGATGATGA---TGATGATGTGGATGATGATGATGATGATGT-------GGATGCTACTGA---------TGATGATGGTGATGC--TGCTGA-------------------------------TGACGATGATGCATGACCGACCAAACT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

----AC-GATGATG---------------------------ATG---------------------ATGAT---GA----------------------------------------------------------------------------------------------------------------------------------------------T------GATGATGATGA-------------------------------------------------------TGATGACGA---------------TGATGGCGATAATGAT------------------------------------GA---TGGTGGCAATGA------------------------T------GGCA-GAGCAGCCACAGAAG---------------TAGT----------------------------------------------------AG---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----TG-A--------------------------------GG------------TAACCATGACG---AT---CAAGGCGATGA------CGACGA-----------------------------CGACGAC--------------------------------------------------------------------------------AACGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG---------------------ATGATGGTGCCG----GGACGTAGATGAGGACGCTGACGGCGATGATGACGA------------------------T------GGCC-TGGCTGCCGCCGAGGCGAAA----------------------TAC-------------------------------AACTCCAGA------------------------GAAAAGAGGGGCCCAA---GAAATGCAA---------ATGA---------AA-GCGAAATCGAGTCACGCGAAGGC--------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----GT-CCCG--------------------------------------------CATGATGATGA--------------------------------------------------------------------AGAT--------------------------------------------GATGA---------TGATGACGAAGAT---GATGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG------------------AT---------------GA------C------------GA---TGACGACGATGA------------------------T------GATGA-G------------------------------------------------------------------------------------GA---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

----GA-T--------------------------------GA------------TGATGATGATGATGA------------------------T-------------------------------------------------------------------------------------------------------GATGATGATGAT---GATGATGATGATGA----------------------------------------------------------------TGATGATGA---TGATGATG------------------AT------GATGATGATGA------T------------GA---TGATGATGA---------------------------T------GAT-------------------------------------------------------------------------------GATGTCGGAGCA--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

----GT-G--------------------------------CA------------GATTGATGATGA-------------------------------------------------------------------------------------------------------------------------------------GCCGGAGAAT---GACGAT----------------------------------------------------------------------------GATGATGATGATGATGATGATGATGATGATGATGAT------------------------------------GA---TGGCTGCATTTG------------------------G------GATA-CGTTTATC-CATTAG--------------------------------------------------------------------------AATTCAACGGCAATCTGGTAAAAGAGAGCCAGCCGAGCCGGAAGGCAA---------AGAG---------CA-TCGTAATGCAGTG--------AGAAATGCCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGAT------------------------------------GA---TGGC.............................................................................................................................................................................................................................................	28	3	194.67	584	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	3	2	7	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	28	1	6	0	89	2	59	1	33	0	3	14	7	10	7	4	0	1	4	133	7	0	0	0	0	1	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	7	5	3	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	15	3	32	21	3	0	0	0	0	0	0	0	0	0	0	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGAT------------------------------------GA---TGG..............................................................................................................................................................................................................................................	27	11	44.91	494	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	10	0	4	0	50	0	31	0	18	2	0	3	3	2	4	0	0	0	0	46	15	0	0	0	6	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	75	5	65	73	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................T----------------------------------------------------------------------------GATGATGATGATGATGATGA..........................................................................................................................................................................................................................................................................................................	21	20	31.35	627	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	614	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGAT------------------------------------GA---TGGC.............................................................................................................................................................................................................................................	26	6	26.83	161	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	5	0	0	1	12	0	9	0	1	0	0	3	1	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	14	6	83	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATG........................................................................................................................................................................................................................................................................................................	20	20	20.65	413	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	394	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATGAT------------------------------------GA---TGGC.............................................................................................................................................................................................................................................	29	2	17.50	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	2	0	5	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGAT------------------------------------GA---TGGCC............................................................................................................................................................................................................................................	29	6	17.50	105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	9	0	6	0	6	0	0	2	0	0	1	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	10	0	2	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGAT------------------------------------GA---TG...............................................................................................................................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGAT------------------------------------G.....................................................................................................................................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGAT...................................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATG...........................................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGAT................................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATGA.......................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................T---GACGAT----------------------------------------------------------------------------GATGATGATGATGATG..............................................................................................................................................................................................................................................................................................................	23	12	0.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGAGAGCCAGCCGATAG.................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

----GC-AATGAGAGATTACATAAAAAAAAACTAGAAACTGA------------T------GATG---AT---GAAAATGGGGA-------------------------------------------------------------------------------TAACGAA---------------GATGAAACAGGGGAGAAAGATACTGATAGGGATGACGATGA------CGAGGAT-------------------------------------GA------------TGATGATGA------------------------------------TAATGATGATGA------A------------AA---TGGGGACGA-------------------------------------------------------------CGGG---------GA--------TGACGAA--------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................A------------------------------------TAATGATGATGA------A------------AA---TG...............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TGA------A------------AA---TGGGGACGA-------------------------------------------------------------CGGG---------GA--------....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GA------------TGATGATGA------------------------------------TAATGATGATGA------...................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AT-------------------------------------GA------------TGATGATGA------------------------------------TAATGATGA............................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................GAT-------------------------------------GA------------TGATGATGA------------------------------------TAATGAT..............................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGATGATGA------------------------------------TAATGATGAT...........................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AT-------------------------------------GA------------TGATGATGA------------------------------------TAA..................................................................................................................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGATGATGA------------------------------------TAATGATGA............................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................T-------------------------------------GA------------TGATGATGA------------------------------------TAATGA...............................................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................TGA------------T------GATG---AT---GAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................T-------------------------------------GA------------TGATGATGA------------------------------------TAATG................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AGGAT-------------------------------------GA------------TGATGATG..........................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

----GC-T--------------------------------AA------------AGCTAATGATGATGAT---GA----------------------------------------------------------------------------------------------------------------------------------------------T------GGTGATGGTGA-------------------------------------------------------TGATGATGA---------------TGATGGCGGTTCTGAT------------------------------------GA---AGATAAAGATCA------------------------T------GATG-TGGATGCCACAAAAA--------------------------------------------------------------------------TGTCCAACAAAAATATAGG-G----GAGGGGAAAAA---AAGATACAA---------AC---------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

----GC-C-----------------------------------GGCGAAAGCG---------GCG---AG---GAGGGCGAGGA------TGGCGA-----------------------------TGATACTGAAGAT--------------------------------------------GATGA---------CGATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGACGATGAGGACGACGATG---------------AGGAAGA---TGACGACGAGGAAGACGA------T------GATGA-T------------------------------------------------------------------------------------GA---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................GACGATGAGGACGACGATG---------------AGG............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GATGATGACGATGAGGACGAC..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................AAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGACG.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................T--------------------------------------------GATGA---------CGATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................GCGA-----------------------------TGATACTGAAGAT--------------------------------------------GATGA---------CGAT............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................G---------------AGGAAGA---TGACGACGAGGAAGAC.....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGAC..............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................ATGATGACGATGAGGACGACGATG---------------AGG............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AAGA---TGACGACGAGGAAGA......................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AGA---TGACGACGAGGAAGA......................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................G------------------------------------ATGATGATGACGATGAGGA......................................................................................................................................................................................................................................................................	20	5	0.40	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AT----------------------------------------------------------------------------G------------------------------------ATGATGATGACGATGAG........................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATGATGATGACGATGAGG.......................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

----AG-T--------------------------------GCCGGTGAAAGTGGC------------GAC---GAGGGCGAGGA------TGGCGA-----------------------------TGATACTGAAGAA--------------------------------------------GATGA---------CGATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGACGATGAGGACGACGATG---------------AGGAAGA---TGATGACGAGGAAGACGA------T------GATGA-T------------------------------------------------------------------------------------GAA---------------------------------------------------------AC---------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................GAGGA------TGGCGA-----------------------------TGATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................ATGAAGAAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGATGAC..............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................G---------------AGGAAGA---TGATGACGAGGA.........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAAGACGA------T------GATGA-T------------------------------------------------------------------------------------GA.........................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................AAAAT---GAAGAT----------------------------------------------------------------------------G------------------------------------ATGATGAT.................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGATGAGGACGACGATG---------------AGG............................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................G------------------------------------ATGATGATGACGATGAGGA......................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................G------------------------------------ATGATGATGACGATGAG........................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	1	0	0

-28.4	-28.4	-28.1	-28.0

dvi_14357

scaffold_13042:1982358-1982508 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads