ID:

dvi_14300

 Coordinate:

scaffold_13042:1670546-1670827 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -10.3 -10.3

Flybase annnotation

exon [dvir_GLEANR_16295:1]; CDS [Dvir\GJ15861-cds]; exon [dvir_GLEANR_16295:2]; CDS [Dvir\GJ15861-cds]; intron [Dvir\GJ15861-in]

Repeatable elements

NameClassFamilyStrand
BEL-1_DPer-I-intLTRPao-
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_13042:781116-781133 -
  2. dvi_14300  scaffold_13042:1670772-1670789 +
  3. scaffold_13049:125700-125717 +
  4. scaffold_13049:16140628-16140645 +
star
  1. scaffold_12472:619822-619840 +
  2. scaffold_12726:838827-838845 +
  3. scaffold_12758:584021-584039 +
  4. scaffold_12823:1744627-1744645 +
  5. scaffold_12855:7145595-7145613 +
  6. scaffold_12875:9823932-9823950 +
  7. scaffold_12928:4503802-4503820 +
  8. scaffold_12932:1079875-1079893 +
  9. scaffold_12963:1539187-1539205 +
  10. scaffold_12970:1658649-1658667 +
  11. scaffold_12970:2099103-2099121 +
  12. scaffold_12970:3298059-3298077 +
  13. scaffold_12970:10644204-10644222 +
  14. scaffold_12970:10701239-10701257 +
  15. dvi_14300  scaffold_13042:1670741-1670759 +
  16. scaffold_13047:10553936-10553954 +
  17. scaffold_13047:18236954-18236972 +
  18. scaffold_13049:316426-316444 +
  19. scaffold_13049:322251-322269 +
  20. scaffold_13049:2538450-2538468 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGGAGCGCCGGCACATACAGAAAGTGCAGAATGCCTTTCAGTACTACAGGTGGGTGCATGGAATTGTAAACAAACGGTATTTAAGCCAAACGCGCTGATGCAAATTACTACCCGCAGCACACACTAACACACATATATGCACATATGCGTGCACATGTGTGTATGCGTGCATGTGCATGTTCAACAGCTGATAACGAAAATCAATTTAAGCGGCTTAACATGTGCACATGTGTGCCTGTGTGTCTGTGTGGGTGTGTGGGTGTATGTATGCGTGTTTGTATGCATGTATATGTAGGACACTTGCTCTAATCGTTTATTTTGCTCCAAACAGACGTTATGCCTACCTAAGGGTTAACAAAACGGAGGATTACCTTAACAGTT
*****************************************************************************************************************************************************************************************************************************************************...................((((((((((((......))))))))))))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060667
160_females_carcasses_total
 V053
head
 SRR060673
9_ovaries_total
 SRR060679
140x9_testes_total
..........................GCAAAAAGTCTTTCAGTACTACA............................................................................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...............ATACAGAAAGTGCAGAATGCCT......................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................ACAGAAAGTGCAGAATGCCT......................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................CTTTCATTTCTTCAGGTGGGT...................................................................................................................................................................................................................................................................................................................................... 21 3 2 1.00 2 0 2 0 0 0 0 0 0 0
........................................AGTACTACAGGTGGGTGCATGGAATT............................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................ACCCGCAGCACACACTCACACACA........................................................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................CTTTCAGTAGTACAGCTGGAT...................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTATGCATGTATATGT........................................................................................ 18 0 4 0.25 1 0 0 0 0 0 1 0 0 0
..........GGCACATATAAAAAGGGCAGA............................................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................GCTCTCATCGTTCATGTTGCT.......................................................... 21 3 8 0.13 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................TAAGCAAATATGCGTGCAC................................................................................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................................................TGGGTTAAGAAAAGGGAGGA.............. 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................TGTGTGGGTGTGTGGGTGT...................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTCCTCGCGGCCGTGTATGTCTTTCACGTCTTACGGAAAGTCATGATGTCCACCCACGTACCTTAACATTTGTTTGCCATAAATTCGGTTTGCGCGACTACGTTTAATGATGGGCGTCGTGTGTGATTGTGTGTATATACGTGTATACGCACGTGTACACACATACGCACGTACACGTACAAGTTGTCGACTATTGCTTTTAGTTAAATTCGCCGAATTGTACACGTGTACACACGGACACACAGACACACCCACACACCCACATACATACGCACAAACATACGTACATATACATCCTGTGAACGAGATTAGCAAATAAAACGAGGTTTGTCTGCAATACGGATGGATTCCCAATTGTTTTGCCTCCTAATGGAATTGTCAA
****************************************************************************************...................((((((((((((......))))))))))))***************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060687
9_0-2h_embryos_total
.TCCTCGCGGCCGTGTTTGTGGTT...................................................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0
.......................................................................................................................................................................................................................................................................................................................................................TGGATTCCCTGTTGTTTAG.................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:1670496-1670877 + dvi_14300 GAG---------------------------------------GAGCGCCGGCACATACAGAAAGTGCAGAATGCCTTTCAGTACTACAGGTGG--------GTG-------------------C-------A--------------------------TGG--------------------------------AATTGTAAACAAACGGTATTTAAGC-----------------CAAACGCGCTG------ATGCAAATTA--CTACCCGCAGCAC---ACACTAACACA---------------CATATATGCACATATGCGTGCACATGTGT-------GTAT-------------------------------------------------------------------------------GCGTGCATGTGCATGTTCAACAGCTGATAACGAAAATCAATTTAAGCGGCTTAAC------------------ATGTGCACATGT--GTGCC------------------------------------------------------TGTGTGTCTGTGTGG--------G-----TGT-------------GTGGGTGTATGTATGCGTG-----------------TTTGTATGCA----TGTA---------------TATGTAGGACACTTGCT-----------------------------------CT----------------------------A-------------AT------------------CGTTTATTTTGCTCCAA-------------ACAG-------------------------A-------------------------------------CGTTATGCCTACCTAAG---------------GGTTAACAAAACGGAGGATTACCTTAA-CAGTT-----------
droMoj3 scaffold_6359:1602609-1602974 + GAG---------------------------------------GAACGGCGCCACATACAGAAAGTGCAGAATGCCTTTCAGTACTACAGGTGG--------GTC--------------------------------------------------TTCATGC--------------------------------AATTGTAAACAAACGGTATAAATGC-----------------CCAAAGTGCCA------ATGCAAATTA--C---C------------CGCTCACACA---------------CACATGTACACACA-----------------------------------------------------------------------------------CTCAGGGCTTGGGTAGAAGTGTGCATGAATGTGCATGTTCAACAGCTGATAACGAAAATCAATTTAAGCGGTTTAAC------------------ATGTGCCAACG------------T--------------------------AC------------------TTGTG----------TGA--------G-----TGT-------------GTGTGTGTGTGCTTAC-----------------------------A----TGTG---------------TATGTAGAACATCTGCT-----------------------------------CT----------------------------A-------------AT------------------CATTGACTTTATTCCCACACACATCACAAACTAG-------------------------A-------------------------------------CGTTATGCCTACATAAG---------------GGTTAACAAAACGGAAGCTTACCTCAA-CAGCT-----------
droGri2 scaffold_15074:3493730-3493948 + CAG---------------------------------------TATA---------------------------------------------------------------------------------CAGG--GTATACGCGTAAAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCG---------CTAGCAG------------CACACAC--TCGTATATAAAT--ACTGACGAA--------CATT-TACCATCATGTGGC-----------------------------------------------------------TAATGCCT------------------CCATGTGCCTGTGTGTGTC----TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTATATGTGTTGTTGTT-------------------------GT--------------------TG-TGTTTGCTTCAT-----------TCAG-------------------------------------------------------------------------------------------------------------------------------------TCTGTG--------------------------------------------------------------------------------------------------------------------------T--------GC
droWil2 scf2_1100000004585:7895650-7895885 + TGT---------------------------------------ATGC---------------------------------------------------------------------------------GCAT--GTATTTAAGTG----------------------------------------------------------------GCGTCAGCGG------------------------------------------------------------------------------------CAGACAGCTGAATGTACA-----------------------------------------------------------------------------------TTTAGCGTGC-----------------------------------------------------------TGTTTGCC------------------AGTTGTTTGTGCGTGAGTT----T--------------------------GA--------------------------CTCTGT--GTGTGTGTGTG-----TGT-------------GTGTG--------TGTGTG--CTTGTGT-----G--TTTGT----T----TGCC---------------AATGTATTACACTCGCC-----------------------------------AG----------------------------G-------------CTTGCCACTCCATCTCCATCTCTTTATCTTGCTC-----------------CAG-------------------------G-------------------------------------CGTAATGCCAACAGGAGCAGAAAGCAGCAAGAGCTTAA-------------------------------------C
dp5 XL_group1a:2482591-2483038 + GAA---------------------------------------GAGCA---GCACATTCAGAAGGTCCAGAATGCCTTTCTGTACTATGGGTGA--------GTG-------------------T-------T--------------------------TGCCTTTATGGCTGTCAGTGAAATGGTCTCCGGCCAACTGTATTTGAATGCTGATCGGGAGAGGTTGAGTCGGGGTGAAGAAGCGCTGTGACATGTGCAGACAAGTCCGCCGGCAGCTCAACAAATTACCGTAGTTTTACGC-------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGGGTGCATTTTTGAGCGTTCGTGCGTTCGTG----------------CGT--------G-----CGT-------------GTGTGTGTGTACATGATAA-----------------GCAGC----CTG--------CA-TGTCTGTTCTTG-----------TACGGGACATGCAGTTGTCGCAACATGATTCGTACCACCAAACACACGGCGTCAATGACTGATAATGAAAATCAATTAATTTATCTGCCACT-CATCCGCACCCCGTATCC----------------------ACAG-------------------------A-------------------------------------CCATATGCATGCCAGCG---------------GCTGAGAAGAACCCTGGATTACCTCAA-CAGCC-----------
droPer2 scaffold_45:609937-610187 + CAC---------------------------------------ACAC---------------------------------------------------------------------------------ACAC--ACATAGGTGCATATGTAGGTG---------------------------------------------------------TGTA------------------------------------------------------------------------------------TGGTA--------G--GCGTAT----G-GCCCGTAT-------ATTT-----------------------------------------------------------------------------------------GTATGTTTT----CTGACCATTATACATGATTTCCTCGCTTTTGTAGGCCTCTCCTTCACTACTTACTCATCAG------------------------TGTGTGT--------GT------------------------GTGTGTGT--------GT---GTA--TGT-------------GCC------TG--TGCATG--CGTGTGT-----G--TGTGT----TTATTG---------------------GTAGAATGTTTGTT-----------------------------------GC----------------------------A-------------TT------------------TATGGGTACTGCTCCTA-------------GCAG-------------------------T-------------------------------------TGTTGTCCT-CCTGGAG---------------GAG-------------------------CAGCA-----------
droAna3 scaffold_13250:2996437-2996596 - TGA-TGTCATGCGCAACCGGCCGCACCTTG-------------CAC-----------------------------------------------A------------------------------TGTATATGTAT--ATGTATATGTATATGTA-------------------------------------------------------------------------------------------------------------------------------------------------TTGTA--------T-----------------------------A---TGTATATGTATATGTA---------------------------------------------------------------------------------------------------------------------T------------------GTATAT----------------------------GTATATGTATATGTATATGTATATGTATA---------------------------------------TG---------------TATATGTATATGTATATG-----------------TATATGTATA----TGTA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------------------------------------------------------------TA-------
droBip1 scf7180000396676:36772-36904 + AC-------------------------------------------------------------------------------------------T------------------------------AACACAT--AC--ATACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA--------T-----------------------------G---TATGTAAATGTATGTGTGTGTGTGTTAAATAATCGTAGAAAATCCTAG-----------------------------------------------------------------------------------CAT------------------GT------------GCGCTTGTAT--------------------------GT------------------CTGTG----------TGT--------G-----TGT-------------GTGTGTGTGTGTTGGAGTG---------------------------------------------------------------TCAG-------------------------------------------------------------------------------------------------------------------------------------TGTGAG--------------------------------------------------------------------------------------------------------------------------T--------GT
droKik1 scf7180000298888:10291-10450 + GT-------------------------------------------------------------------------------------------ATATATGTATA-------------------T-------ATGTATATATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGTATATATGTATATATGTAT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATATGTATATATGTATATATGTATATATGTATA--TATGT------ATA------------------TATGTATATATGTATATATGTA-------------------------TA--------------------TA-TGTATATTTGTA-----------TATA-------------------------------------------------------------------------------------------------------------------------------------TGTATA--------------------------------------------------------------------------------------------------------------------------T--------AT
droFic1 scf7180000454066:3054238-3054382 + AACAC---TTGCGA-AATGAATTAACTTTAAGCCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------AATTT-----------------------GTGCTCTTGTGTGCGCT----CATATCTGTATGTGTGGATGA------------------------------------------GT--------G-----TAT-------------GTGTGTGGGTGCTCGTACGCTTGTGTGAGTGTG-CA--------------------TA-CATAAATGCTCG-----------TAAT-------------------------------------------------------------------------------------------------------------------------------------TGTTTA--------------------------------------------------------------------------------------------------------------------------T--------TT
droEle1 scf7180000490546:1027102-1027310 - GTAAATTAATGTGC-GCTGGATAAACTTTGTGTCGTCCATGTGTGT--------G---------------------------------TGTGTGTGTGTGTGTG-------------------T-------GTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTGTGTGTGTGTGTGTG-------------------------TG--------------------TG-TGTGTGTGTGTG-----------TGTG-------------------------------------------------------------------------------------------------------------------------------------TGTGTG--------------------------------------------------------------------------------------------------------------------------T--------GT
droRho1 scf7180000779872:341211-341379 - CC-------------------------------------------------------------------------------------------GCAGGATTGCGTGACCAACACTTATGTGTA-T--GTAC--GTATTTGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGATGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT--------GTGTGTGTGTG------------------TG------------TGTGTGTGTGTGTGTGTG----TG---------TG----TGTGTG-----------------TGTG--CG------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--------------------------------------------------------------------------------------------------------------------------GGTACTCTGAT
droBia1 scf7180000301232:32917-33075 - AT-------------------------------------------------------------------------------------------A------------------------------TGTATAT--GT--ATATGTATGTGTATATGTA------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATATGTATATGTATGTGTATGTGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATGTATATGTATATGTATATGTATATGTATGTG--TATATGTATGT--GT----------------------ATATGTATATGTATATG----TA-----------------------------------------TG-TGTATATGTATG-----------TGTA-------------------------------------------------------------------------------------------------------------------------------------TATGTA----------------------------------------------------------------------------------------------------------------------------TA-------
droTak1 scf7180000415381:115351-115505 - TAT---------------------------------------GTGT---------------------------------------------------------------------------------GTGT--GTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTGTGTGTGTGTGTGTG-------------------------TG--------------------TG-TGTGTGTGTGTG-----------TGTG-------------------------------------------------------------------------------------------------------------------------------------TGTGTG--------------------------------------------------------------------------------------------------------------------------T--------GT
droEug1 scf7180000409509:172055-172230 + CAC---------------------------------------ACAC---------------------------------------------------------------------------------ACAC--ACACACATCTACACATACGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------CGAA--CTCGTCGAAAATTTCAAATTAAAATTCTGCAA---------------------------------------------------------------AGTTTGCC------------------ATGTTCTCGTG------------T--------------------------GT------------------GTGTGTGTGTGTGTGTGT--------G-----TGT-------------GCTAGTCTATGTGTGTGTG-----------------TTTGTGTTTG----GGCAAACACTGCGCATAATTT-----------TGCT-------------------------------------------------------------------------------------------------------------------------------------CAAATC--------------------------------------------------------------------------------------------------------------------------T--------TT
dm3 chrUextra:22197359-22197549 - CAAAT---CGATAC-C-----------TGTA------------ATTATTAACTTA---------------------------------TATGTATATATGTATA-------------------T-------ATGTATATATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGTATATATGTATATATGTAT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATATGTATATATGTATATATGTATATATGTATA--TATGT------ATA------------------TATGTATATATGTATATATGTA-------------------------TA--------------------TA-TGTATATATGTA-----------TATA-------------------------------------------------------------------------------------------------------------------------------------TGTATA--------------------------------------------------------------------------------------------------------------------------T--------AT
droSim2 x:9559844-9559934 + GT-------------------------------------------------------------------------------------------G------------------------------TGTGTGT--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------GT------------------------GT--------GTGTGTGT---GTG--TGT-------------GTG------TG--TGCGAG--TATGTGT-----G--TGTGT---------------------------------------TTTGTG-----------------------------------CT----------------------------A-------------TT------------------CACGAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:2731273-2731452 - AT-------------------------------------------------------------------------------------------A------------------------------TATAAGT--AT--GTGCGGGCATATGTATATT------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATTTGTATATGAACG---------GCAACAG------------CGCACAC--AATTA--ATAAG--AATTAC-AA--------GTTG-TATGATGAGGGGGC-----------------------------------------------------------GGTTGGCT------------------GTGTGTCTGCGTG------------------------------------------------------------TGTGTGGGTGTGTGG--------G-----TGT-------------GTGGGTGTGTGTCTGTGTG-----------------TTTGTGCGGG----CTTA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------CA-------
droYak3 X:6918662-6918820 - CAT---------------------------------------ATTC---------------------------------------------------------------------------------TTAT--ATATATGCGTATACATATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCAA----------------------------------TATATGTGTTTGTGTGGAAA----------------------------------------------------------------------------------AAAAAATTATTCGTGCGGTTTTCT------------------CTATGCATACGTGTGTGCC------------------------------------------------------T--GTGTGTGT--GT---------GTACGTGT-------------CTGTGTGTG----TGTGGCTCTATG--T-----G------GGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCG----------------------------------------------------------------------------------------------------------------------------TG-------
droEre2 scaffold_4770:5918676-5918930 - AT-------------------------------------------------------------------------------------------G------------------------------TATGTAT--GT--ATGTATGTATGTATGTATG------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTATGTATGTA------TGTAT-------GTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTATGTATGTATGCATGTATGTA----T--GTATGT--ATGT------------------ATGCATGT----ATG---------------------------------TATGT----ATGTACA----TA-TGTATGTA--TG-----------TAC--------------------------------------------------------------------------------------------------------------------------------------TGTATGTGTTACTTGCACAAAGTAGTAAAAATTGTCTTAATTAAAGCCAAATAACCGGGCAAATGTTATGCATACAAGTG---------------TTTGAAATGTTATAATATTTATTTTAAAATATT-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAG---------------------------------------GAGCGCCGGCACATACAGAAAGTGCAGAATGCCTTTCAGTACTACAGGTGG--------GTG-------------------C-------A--------------------------TGG--------------------------------AATTGTAAACAAACGGTATTTAAGC-----------------CAAACGCGCTG------ATGCAAATTA--CTACCCGCAGCAC---ACACTAACACA---------------CATATATGCACATATGCGTGCACATGTGT-------GTAT-------------------------------------------------------------------------------GCGTGCATGTGCATGTTCAACAGCTGATAACGAAAATCAATTTAAGCGGCTTAAC------------------ATGTGCACATGT--GTGCC------------------------------------------------------TGTGTGTCTGTGTGG--------G-----TGT-------------GTGGGTGTATGTATGCGTG-----------------TTTGTATGCA----TGTA---------------TATGTAGGACACTTGCT-----------------------------------CT----------------------------A-------------AT------------------CGTTTATTTTGCTCCAA-------------ACAG-------------------------A-------------------------------------CGTTATGCCTACCTAAG---------------GGTTAACAAAACGGAGGATTACCTTAA-CAGTT-----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................ATACAGAAAGTGCAGAATGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
........................................................ACAGAAAGTGCAGAATGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................AGTACTACAGGTGG--------GTG-------------------C-------A--------------------------TGG--------------------------------AATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATGCA----TGTA---------------TATGT............................................................................................................................................................................................................................................................................................1840.251000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGG--------G-----TGT-------------GTGGGTGT..............................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
GAG---------------------------------------GAACGGCGCCACATACAGAAAGTGCAGAATGCCTTTCAGTACTACAGGTGG--------GTC--------------------------------------------------TTCATGC--------------------------------AATTGTAAACAAACGGTATAAATGC-----------------CCAAAGTGCCA------ATGCAAATTA--C---C------------CGCTCACACA---------------CACATGTACACACA-----------------------------------------------------------------------------------CTCAGGGCTTGGGTAGAAGTGTGCATGAATGTGCATGTTCAACAGCTGATAACGAAAATCAATTTAAGCGGTTTAAC------------------ATGTGCCAACG------------T--------------------------AC------------------TTGTG----------TGA--------G-----TGT-------------GTGTGTGTGTGCTTAC-----------------------------A----TGTG---------------TATGTAGAACATCTGCT-----------------------------------CT----------------------------A-------------AT------------------CATTGACTTTATTCCCACACACATCACAAACTAG-------------------------A-------------------------------------CGTTATGCCTACATAAG---------------GGTTAACAAAACGGAAGCTTACCTCAA-CAGCT-----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAGCTTACCTCAA-CA..............2011.001100000
droGri2
CAG---------------------------------------TATA---------------------------------------------------------------------------------CAGG--GTATACGCGTAAAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCG---------CTAGCAG------------CACACAC--TCGTATATAAAT--ACTGACGAA--------CATT-TACCATCATGTGGC-----------------------------------------------------------TAATGCCT------------------CCATGTGCCTGTGTGTGTC----TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTATATGTGTTGTTGTT-------------------------GT--------------------TG-TGTTTGCTTCAT-----------TCAG-------------------------------------------------------------------------------------------------------------------------------------TCTGTG--------------------------------------------------------------------------------------------------------------------------T--------GCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGT---------------------------------------ATGC---------------------------------------------------------------------------------GCAT--GTATTTAAGTG----------------------------------------------------------------GCGTCAGCGG------------------------------------------------------------------------------------CAGACAGCTGAATGTACA-----------------------------------------------------------------------------------TTTAGCGTGC-----------------------------------------------------------TGTTTGCC------------------AGTTGTTTGTGCGTGAGTT----T--------------------------GA--------------------------CTCTGT--GTGTGTGTGTG-----TGT-------------GTGTG--------TGTGTG--CTTGTGT-----G--TTTGT----T----TGCC---------------AATGTATTACACTCGCC-----------------------------------AG----------------------------G-------------CTTGCCACTCCATCTCCATCTCTTTATCTTGCTC-----------------CAG-------------------------G-------------------------------------CGTAATGCCAACAGGAGCAGAAAGCAGCAAGAGCTTAA-------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GTGTG--------TGTGTG--CTTGTGT-----.....................................................................................................................................................................................................................................................................................................................................19200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTGTGTGTGTG-----TGT-------------GTGTG--------TGTG.....................................................................................................................................................................................................................................................................................................................................................26200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------GTGTG--------TGTGTG--CTTGT............................................................................................................................................................................................................................................................................................................................................18200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG-----TGT-------------GTGTG--------TGTGTG--C................................................................................................................................................................................................................................................................................................................................................22200.05100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------TGTGTG--CTTGTGT-----G--T.................................................................................................................................................................................................................................................................................................................................18200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----TGT-------------GTGTG--------TGTGTG--CT...............................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
GAA---------------------------------------GAGCA---GCACATTCAGAAGGTCCAGAATGCCTTTCTGTACTATGGGTGA--------GTG-------------------T-------T--------------------------TGCCTTTATGGCTGTCAGTGAAATGGTCTCCGGCCAACTGTATTTGAATGCTGATCGGGAGAGGTTGAGTCGGGGTGAAGAAGCGCTGTGACATGTGCAGACAAGTCCGCCGGCAGCTCAACAAATTACCGTAGTTTTACGC-------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGGGTGCATTTTTGAGCGTTCGTGCGTTCGTG----------------CGT--------G-----CGT-------------GTGTGTGTGTACATGATAA-----------------GCAGC----CTG--------CA-TGTCTGTTCTTG-----------TACGGGACATGCAGTTGTCGCAACATGATTCGTACCACCAAACACACGGCGTCAATGACTGATAATGAAAATCAATTAATTTATCTGCCACT-CATCCGCACCCCGTATCC----------------------ACAG-------------------------A-------------------------------------CCATATGCATGCCAGCG---------------GCTGAGAAGAACCCTGGATTACCTCAA-CAGCC-----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------A-------------------------------------CCATATGCATGCCAGCG---------------GCTGA.......................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCG---------------GCTGAGAAGAACCCTGGA..........................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCAAACACACGGCGTCAATGACTG.......................................................................................................................................................................................................................2711.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGGATTACCTCAA-CA..............2011.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCTGGATTACCTCAA-C...............2011.0010100000000
...................................................................................................................................................................................................CTGTATTTGAATGCTGATCGGGAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
droPer2
CAC---------------------------------------ACAC---------------------------------------------------------------------------------ACAC--ACATAGGTGCATATGTAGGTG---------------------------------------------------------TGTA------------------------------------------------------------------------------------TGGTA--------G--GCGTAT----G-GCCCGTAT-------ATTT-----------------------------------------------------------------------------------------GTATGTTTT----CTGACCATTATACATGATTTCCTCGCTTTTGTAGGCCTCTCCTTCACTACTTACTCATCAG------------------------TGTGTGT--------GT------------------------GTGTGTGT--------GT---GTA--TGT-------------GCC------TG--TGCATG--CGTGTGT-----G--TGTGT----TTATTG---------------------GTAGAATGTTTGTT-----------------------------------GC----------------------------A-------------TT------------------TATGGGTACTGCTCCTA-------------GCAG-------------------------T-------------------------------------TGTTGTCCT-CCTGGAG---------------GAG-------------------------CAGCA-----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATG--CGTGTGT-----G--TGTGT----T........................................................................................................................................................................................................................................................................................................................1920.501010000
droAna3
TGA-TGTCATGCGCAACCGGCCGCACCTTG-------------CAC-----------------------------------------------A------------------------------TGTATATGTAT--ATGTATATGTATATGTA-------------------------------------------------------------------------------------------------------------------------------------------------TTGTA--------T-----------------------------A---TGTATATGTATATGTA---------------------------------------------------------------------------------------------------------------------T------------------GTATAT----------------------------GTATATGTATATGTATATGTATATGTATA---------------------------------------TG---------------TATATGTATATGTATATG-----------------TATATGTATA----TGTA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------------------------------------------------------------TA-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AC-------------------------------------------------------------------------------------------T------------------------------AACACAT--AC--ATACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA--------T-----------------------------G---TATGTAAATGTATGTGTGTGTGTGTTAAATAATCGTAGAAAATCCTAG-----------------------------------------------------------------------------------CAT------------------GT------------GCGCTTGTAT--------------------------GT------------------CTGTG----------TGT--------G-----TGT-------------GTGTGTGTGTGTTGGAGTG---------------------------------------------------------------TCAG-------------------------------------------------------------------------------------------------------------------------------------TGTGAG--------------------------------------------------------------------------------------------------------------------------T--------GTSizeHit CountTotal NormTotal
No Reads
droKik1
GT-------------------------------------------------------------------------------------------ATATATGTATA-------------------T-------ATGTATATATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGTATATATGTATATATGTAT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATATGTATATATGTATATATGTATATATGTATA--TATGT------ATA------------------TATGTATATATGTATATATGTA-------------------------TA--------------------TA-TGTATATTTGTA-----------TATA-------------------------------------------------------------------------------------------------------------------------------------TGTATA--------------------------------------------------------------------------------------------------------------------------T--------ATSizeHit CountTotal NormTotal
No Reads
droFic1
AACAC---TTGCGA-AATGAATTAACTTTAAGCCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------AATTT-----------------------GTGCTCTTGTGTGCGCT----CATATCTGTATGTGTGGATGA------------------------------------------GT--------G-----TAT-------------GTGTGTGGGTGCTCGTACGCTTGTGTGAGTGTG-CA--------------------TA-CATAAATGCTCG-----------TAAT-------------------------------------------------------------------------------------------------------------------------------------TGTTTA--------------------------------------------------------------------------------------------------------------------------T--------TTSizeHit CountTotal NormTotal
No Reads
droEle1
GTAAATTAATGTGC-GCTGGATAAACTTTGTGTCGTCCATGTGTGT--------G---------------------------------TGTGTGTGTGTGTGTG-------------------T-------GTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTGTGTGTGTGTGTGTG-------------------------TG--------------------TG-TGTGTGTGTGTG-----------TGTG-------------------------------------------------------------------------------------------------------------------------------------TGTGTG--------------------------------------------------------------------------------------------------------------------------T--------GTSizeHit CountTotal NormTotal
No Reads
droRho1
CC-------------------------------------------------------------------------------------------GCAGGATTGCGTGACCAACACTTATGTGTA-T--GTAC--GTATTTGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGATGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT--------GTGTGTGTGTG------------------TG------------TGTGTGTGTGTGTGTGTG----TG---------TG----TGTGTG-----------------TGTG--CG------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--------------------------------------------------------------------------------------------------------------------------GGTACTCTGATSizeHit CountTotal NormTotal
No Reads
droBia1
AT-------------------------------------------------------------------------------------------A------------------------------TGTATAT--GT--ATATGTATGTGTATATGTA------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATATGTATATGTATGTGTATGTGT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATGTATATGTATATGTATATGTATATGTATGTG--TATATGTATGT--GT----------------------ATATGTATATGTATATG----TA-----------------------------------------TG-TGTATATGTATG-----------TGTA-------------------------------------------------------------------------------------------------------------------------------------TATGTA----------------------------------------------------------------------------------------------------------------------------TA-------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT---------------------------------------GTGT---------------------------------------------------------------------------------GTGT--GTGTGTGTGTGTGTGTGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGT-------GTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGT------GTG------------------TGTGTGTGTGTGTGTGTGTGTG-------------------------TG--------------------TG-TGTGTGTGTGTG-----------TGTG-------------------------------------------------------------------------------------------------------------------------------------TGTGTG--------------------------------------------------------------------------------------------------------------------------T--------GTSizeHit CountTotal NormTotal
No Reads
droEug1
CAC---------------------------------------ACAC---------------------------------------------------------------------------------ACAC--ACACACATCTACACATACGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------CGAA--CTCGTCGAAAATTTCAAATTAAAATTCTGCAA---------------------------------------------------------------AGTTTGCC------------------ATGTTCTCGTG------------T--------------------------GT------------------GTGTGTGTGTGTGTGTGT--------G-----TGT-------------GCTAGTCTATGTGTGTGTG-----------------TTTGTGTTTG----GGCAAACACTGCGCATAATTT-----------TGCT-------------------------------------------------------------------------------------------------------------------------------------CAAATC--------------------------------------------------------------------------------------------------------------------------T--------TTSizeHit CountTotal NormTotal
No Reads
dm3
CAAAT---CGATAC-C-----------TGTA------------ATTATTAACTTA---------------------------------TATGTATATATGTATA-------------------T-------ATGTATATATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGTATATATGTATATATGTAT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATATGTATATATGTATATATGTATATATGTATA--TATGT------ATA------------------TATGTATATATGTATATATGTA-------------------------TA--------------------TA-TGTATATATGTA-----------TATA-------------------------------------------------------------------------------------------------------------------------------------TGTATA--------------------------------------------------------------------------------------------------------------------------T--------ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
CAAAT---CGATAC-C-----------TGTA------------ATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ATTAACTTA---------------------------------TATGTATATATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------TATGTATATATGTATATATG...............................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................TGTATA-------------------T-------ATGTATATATGTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-------------------------TA--------------------TA-TGTATATATGTA-----------TAT.................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TATGTATATATGTATA-------------------T-------ATGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................GTAT-------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATATGTATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................TGTATATATGTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GT-------------------------------------------------------------------------------------------G------------------------------TGTGTGT--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------GT------------------------GT--------GTGTGTGT---GTG--TGT-------------GTG------TG--TGCGAG--TATGTGT-----G--TGTGT---------------------------------------TTTGTG-----------------------------------CT----------------------------A-------------TT------------------CACGAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.T-------------------------------------------------------------------------------------------G------------------------------TGTGTGT--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
................................................................................................................................TGT--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
..................................................................................................................................T--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------..........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
.T-------------------------------------------------------------------------------------------G------------------------------TGTGTGT--GT--GTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000001000000
droSec2
AT-------------------------------------------------------------------------------------------A------------------------------TATAAGT--AT--GTGCGGGCATATGTATATT------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATTTGTATATGAACG---------GCAACAG------------CGCACAC--AATTA--ATAAG--AATTAC-AA--------GTTG-TATGATGAGGGGGC-----------------------------------------------------------GGTTGGCT------------------GTGTGTCTGCGTG------------------------------------------------------------TGTGTGGGTGTGTGG--------G-----TGT-------------GTGGGTGTGTGTCTGTGTG-----------------TTTGTGCGGG----CTTA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------CA-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGTGG--------G-----TGT-------------GTGGGTGT..............................................................................................................................................................................................................................................................................................................................................................2190.1110100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGTGG--------G-----TGT-------------GTGGT.................................................................................................................................................................................................................................................................................................................................................................18200.0511000
droYak3
CAT---------------------------------------ATTC---------------------------------------------------------------------------------TTAT--ATATATGCGTATACATATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCAA----------------------------------TATATGTGTTTGTGTGGAAA----------------------------------------------------------------------------------AAAAAATTATTCGTGCGGTTTTCT------------------CTATGCATACGTGTGTGCC------------------------------------------------------T--GTGTGTGT--GT---------GTACGTGT-------------CTGTGTGTG----TGTGGCTCTATG--T-----G------GGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCG----------------------------------------------------------------------------------------------------------------------------TG-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................ATAGCAA----------------------------------TATATGTGTTTGTGTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
AT-------------------------------------------------------------------------------------------G------------------------------TATGTAT--GT--ATGTATGTATGTATGTATG------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTATGTATGTA------TGTAT-------GTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTATGTATGTATGCATGTATGTA----T--GTATGT--ATGT------------------ATGCATGT----ATG---------------------------------TATGT----ATGTACA----TA-TGTATGTA--TG-----------TAC--------------------------------------------------------------------------------------------------------------------------------------TGTATGTGTTACTTGCACAAAGTAGTAAAAATTGTCTTAATTAAAGCCAAATAACCGGGCAAATGTTATGCATACAAGTG---------------TTTGAAATGTTATAATATTTATTTTAAAATATT-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 11:38 PM