ID:

dvi_14234

 Coordinate:

scaffold_13042:988790-988940 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.4 -16.9

Flybase annnotation

exon [dvir_GLEANR_16181:2]; CDS [Dvir\GJ15740-cds]; intron [Dvir\GJ15740-in]; Antisense to intron [Dvir\GJ15838-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACAAATACTCGCCTAATTTCATGTCTCACGCCACAACAACAACAACAACAACTGTTAACTGTAGCAGCGCCTGCGACAACAACAACAGCAGCAGCAACAGCAACAACAACAACAACAACATCTCAGCAGCAGCAACTGCAGTGCAACAACAACAACAACAACAGCAGCAACAATTCAAAACATTTCAATTACATTGCAGCTAGTTCGGCTCCAACCGATGAGGACAACCCACCCGAGCTATCTCCCACA
******************************************************((((.(((((((..((..((((...................................................))))..))..)))))))..))))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 M027
male body		 SRR060667
160_females_carcasses_total
 GSM1528803
follicle cells		 M061
embryo
 SRR060664
9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060687
9_0-2h_embryos_total
......................................................................................................................AACATCTCATTAGCAGCA................................................................................................................... 18 2 20 1.15 23 2 0 0 0 0 0 0 0 8 7 2 0 0 0 1 1 1 1
.............................................................................................................................................................................................ATTACATTGCAGCTAGTTCGGCTC...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AACTGTAGCAGCGCCTGCGG............................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGAGGACAACCCACTCGAGCTATCTCC.... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACATTGCAGCTAGTTCGGCTCCAACCGAA.............................. 30 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGATGAGGACAACCCACCCGAGCTAT........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTGCAGCTAGTTCGGCTCCAACC................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGGACAACCCACCCGAGCTATCTCC.... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GACAACCCACCCGAGCTATCTCCCAC. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGTTAACTGTAGCAGCGCCTGCGA............................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCTCAGCAGCAGCAACTGCAGTGCAACA..................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCAATTACATTGCAGCTAGTTCGGCTCC..................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATCTCAGCAGCAGCAACTGCAGT........................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTCAGCAGCAGCAACTGCAGTGC......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTGCAGCTAGTTCGGCTCCAAC.................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCAGCTAGTTCGGCTCCA.................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTGCAGCTAGTTCGGCTCCCACC................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTGCAGTGCAACAACAACAA.............................................................................................. 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACATTTCATTTACATTG..................................................... 18 1 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AACAACAACAACAACAACAGCA................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCACAACAACAACAGCAGCAACAATT.......................................................................... 26 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CGACAACAACAACAGCAGCAGC.......................................................................................................................................................... 22 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACTATAGTAGCGCCTCCGA............................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................AACAACAGCAGCAACAATT.......................................................................... 19 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CACCAACACCGACTGTTAAC.............................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AGCTGCAGCAACTGCAGT........................................................................................................... 18 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACAACAACAACAACTGTT................................................................................................................................................................................................. 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAACAACAACAACAACAACAGCAGCA................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AACAGCAACAACAACAACAACA.................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGTGCAACAACAACAACAAC.......................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CAACAACAACAGCAGCAGCA......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................ACAACAACAGCAGCAGCA......................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CCACAACAACAACAACAACAAC..................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CAACAACAACAACAACAACATC............................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AACAGCAGCAGCAACAGCAACAACAA............................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AACAACAGCAGCAGCAACAGCA................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AACAGCAGCAGCAACAGCAAC................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................GCAACAACAACAACAACAACAGCA................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTTGTTTATGAGCGGATTAAAGTACAGAGTGCGGTGTTGTTGTTGTTGTTGTTGACAATTGACATCGTCGCGGACGCTGTTGTTGTTGTCGTCGTCGTTGTCGTTGTTGTTGTTGTTGTTGTAGAGTCGTCGTCGTTGACGTCACGTTGTTGTTGTTGTTGTTGTCGTCGTTGTTAAGTTTTGTAAAGTTAATGTAACGTCGATCAAGCCGAGGTTGGCTACTCCTGTTGGGTGGGCTCGATAGAGGGTGT
*****************************************************************************************************((((.(((((((..((..((((...................................................))))..))..)))))))..))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060687
9_0-2h_embryos_total
 SRR060670
9_testes_total
 GSM1528803
follicle cells		 V053
head
 SRR060678
9x140_testes_total
 V116
male body		 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 M028
head
 M047
female body
 SRR060661
160x9_0-2h_embryos_total
..TGTTTATTAGCGGATTGAAG..................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TACAGAGTGGGGTGCCGTTG................................................................................................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTGTTGTTGTTGTCGTCGTC........................................................................................................................................................... 20 0 14 0.21 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TGTCGTCGATGGTAAGTTTT..................................................................... 20 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTCACGTTGTTGTTGTTGT............................................................................................ 19 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GTTGTCGTCGTCGTTGTCGTTGTTG.............................................................................................................................................. 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................CTGTTGTTGTTGTCGTCGTCG.......................................................................................................................................................... 21 0 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................GTAACGACCATCATGCCGA....................................... 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................ACGCTGTAGATGTTGTCGTCC............................................................................................................................................................. 21 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................AAAGTACAGCGTGCGGTT....................................................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...GTTTATGAGGGAATTAAA...................................................................................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................CTGTTGTTGTTGTCGTCGCCGT......................................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................TTGTAGTTGTTGTAGAGGC........................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGTGGGCCCGTTTGAGGG... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTTGTAGTTGTTATAGAGT............................................................................................................................ 20 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTGACGTCTTCCTTGTCGTTGTTGTTGT.......................................................................................................................................... 28 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TTGTTGTCGTCGTCGTTGTC..................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................TGTTGTTGTTGTTGTTGT....................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:988740-988990 - dvi_14234 AAACAA----AT--------ACTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CGCCA-C----------------------AACA------------------------------------ACA---------------------------------------------------ACAACAACAAC----------------------TGT---TAACTGTAGCAGCGCCTGCGACAACAACA----ACAGCAG------------------------------------------CAGCAACAGCAAC----------------A---------ACAA---------------------------CAACAACAACATCTCAGCA-------------------GCAGCAACTGCAG---------------------------------------------T--------------GCAACAACAACAACAACA------------------------------------------------------ACAGCAGCAACA-----------------------------------------------------------------------------------------------------------------------ATTCAAAACATTTCAATTACATTGCAG------CTAGTTCGGCTCCAACCGATGA---------------------------------------------------GGACAAC-CCACC-CGAGCTATCTCCCACA
droMoj3 scaffold_6328:2974662-2974850 - AAACAA----AT--------GCTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CGCCA-C----------------------AACA------------------------------------ACA---------------------------------------------------ACAACAACAAT----------------------TGC---TCAATGCAGCAGCAGCAGCAGCTACAACA----AC--------------------------------------G--------CAGCAGCAGCAGC----------------A---------GCAA---------------------------CAAGAATTGC--CA-AGCAGCAGCAGCAGCA-------GT---------------A----ACAA-------------------CA--------------------------------------------------------------------------------------------------TCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------ATTCAACACATTTCAATTACATTGC-------------------------------------------------------------------------------------------------------AGCTAGCA
droGri2 scaffold_15081:2107912-2108133 - AAACAA----AT--------ACTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CACCA-C----------------------TACA------------------------------------ACG---A---CA------------------------------------ACAACAACAACAACAAC----------------------TGC---TAAATGCAACAGCGCCTGCAACAACAACA----ACAACAA------------------------------------------TAGCAACAGCAGT----------------A---------GCAA---------------------------CAACAACTGCA--------GC-------------------------AGCA----------------------------------------------------------------GCAGCAA--------------A-----------------------------------------------CCAGCAGCAGCAC----------A---AC------AACA---------------AGAACA--------------------------------------------------------------ACAACGACCATTCAAAACAATTACTTTACATTACAG------CTA---------------------------------------------------------------------------------GCCA-------AAGCAACA
droWil2 scf2_1100000008636:1024-1271 + CAGCAA----CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GCAACAA---CA------------------------------------ACAGCAGCAACAACAACTGCA-G---------------------C--AGC------------------------AACAATTGCAGCAACAACA----------A---CAA-C-------AGCAG---CAACAACAACAGC----------------A---------GCAGCAACAACAGCATCAGCA------------------------------------------------ACAGCAACAGCA--------------GCAACGAATGCAACAGCAACA-----------------------------------------GCAACAGCAGCAACAATTGCAGCAACAACAACAACAGCAACAA------------------------CAACAACAGCAGCAACAA----------------------------------------------------------------------------------CA---------ACA----------------------------------------------------------------------------------------------------------------------------GCTGCAA-CAACAACAGCA
dp5 XR_group6:8816401-8816651 - AAACAA----CA--------GCACCAA-------------------------------------------------A------------------A---------ACATCGAAAATAACGCCAACAAAAA-------------------CACCGACAA------CA------------------ACAGAACCTA---GA------------------------------------ACAACAACAACACCAACAA------------------------------------------------------------------------------------------------------------CAACAGCAACATC----------------A---------ACAACAACAAACGCAACACCA---------------------------------------------------AAAACAACAAC-------A----GCACCTAAAACAACAACAACA-------------TC-------A------ACA---------------ACAACAACAA---------------------------ATCAAACAATAACACCAAAAACAAC------------A---C------AAACAG------CAACACCA------------------------------ACAACACCAACAATATCA------C-CA---------ACA----------------------------------------------------------------------------------------------------------------------------ACTAAAC-CAACATCCACA
droPer2 scaffold_60:67005-67248 + AAGCAG----CT--------GCCAATATTGC----------------------------------------------------------------A---------ACAAC----------------------------------------------------A------------------------GCAACTT---CA------------------------------------GCAACAACAACAACAACTGCA-A---------------------C--TTC------------------------------------------------------------------------------AACAACAACAGC------AAC-------AACAACAGCAACTG------------------CAACTTCAG-----------------CAACAACAACAACA-------ACAACAACACCAAC----A-----------AGCA-------------GCGCCCCGCAATGCGAAT----G--T---ACAACCAGAACATCAACAAAACCAACAACTAAT-----------------------------------------GACTTC------------T---A------TTGCGG------CCGTGCCCTCAGCAGCGGCGACT------------------------------------------A---------ACA----------------------------------------------------------------------------------------------------------------------------ACAGCAG-CACCACCAGCA
droAna3 scaffold_13266:12495723-12495992 - dan_1960 CCGATG----CT--------GCAGCCG-------------------------------------------------C------------------ACCAGCTTCAGTTGC----------------------------------------------------A------------------------ACAGCTC---CA------------------------------------GCAGCAGCAACAACAGATGCA-G---------------------C--AGC------------------------AGC------AC---CAACT----------GATGCAG-A-------TGCAGCAACAGCAACAGCACCAACAACAGCATCAGCA-------------------------------------------------------------------------------GCAGCAACACCAGC-------------------------------------------------------AGTTGCAACACCA---------------------------------------------------------------GCAA---CAGCA---------------AC------AACA---------------GCAGCAACAGACCACGCCAT----------ATAA--------------------------------------------CGC--CA-----------AATTCCCGAACTCACTGTTCCGGCCGCTACAGGATCAGGCCA------A----------------CTACG---------CCAACACC------G-GCTCC-CTGC-CAGATCTCACA
droBip1 scf7180000396589:2062995-2063224 - ACGCAG----CA--------ACAAGCTCAGC----------------------------------------------------------------A---------ACAGCAAATGAT-------------------------TCAGCAGC------------A------------------------GCA---A---CA------------------------------------ACAACA------------GCA-GCAGCAGC-----------------------------------------------------AA---CAACA----------A---CAG-C-------AGCAGCAACAACAACAGCAGCTGCAGCAACAACAGCA-------------------------GTT---------------------------------------------------GCAACAACAACAGC---A----GCAG-------------------CA-----------------------------ACAAC---------------------------------------------------------------------AACAGCAGTTA------CA---GC------AA------------------CAACAACCGATCATGCAACAAGATC-----------------------------------------------------C-----------------------------------CCAGCAGCAACAGCAGT---------------------------------------------------CGCCAAG-GCTGC-CGACCACTCCCACAGG
droKik1 scf7180000302472:1885022-1885270 - GAACCA---GATACCCTTTGGCGCCGGCACCA-----------------------------------------------------A--------------------------------------------------------------TCAGCAGCAGCTTCA------------------------GCAGCTC---CA------------------------------------GCAGCAGCAGCAGCAACAACA-G---------------------C--AGC------------------------AAC---------------T----------C---CA--------------------GCAGCAACAGC------AAC-------A---------ACAG---------------------------CAGCAACAGCA--------AC----------TCCTGCAGCAGCAACAGCAGC-------------------------------------------------------AGCAGCAACT------------------------------------------------------------------CCAACAGCAAATCCTA------CA---GC------AGCAG------C---A--------------------------------------------------------------------------------ACTC--CA------------------------------GCAGCAGCCCTCGTTGCAAGCCTCGCCCAGTCACAATG-------------------------CCACC------AATCTGCTGCGC-CGCGCCTCCCA
droFic1 scf7180000454050:777567-777784 + CTACAG----CT--------GCAACTA-------------------------------------------------C------------------T---------GCTGCA----------------------------------------------------------------------------GCAACTA---CA------------------------------------ACAGCAGCAACAACAACTGCA-G---------------------C--AAC------------------------AACCACTGCAG---CAACT----------A---CAA-C-------AGCAGCTACAACAACAGCAGCTACAACAACAGCAGCA-------------------------------------------------------------------------------------ACTACAAC----AGCG----GCAACAACTA---------CT--------------------------------------------GCGGCAACAACAACTGCT---------------------------------------G---C---------------AACAAC------TACAG------CTGCAACAACAACAGCGGCAACT---------------------------------------A-CT---------ACC----------------------------------------------------------------------------------------------------------------------------GCTGCAA-CAACCACAGCA
droEle1 scf7180000490751:1055162-1055402 + AAAAAT--------------ACTCGACTAATTTCA-----T---------------GTCTCG--------------------------------------------------------CGACG-C----------------------CACAACA---------------------------------ACA---ACTACAACA---------------------------------ACA--AACAGCAGC---------------------------------------------------------------------AG---CATCA----------T---CAT-C-------AGCAGCTACAGCTACAGCAGCAACAGCTACAGCTACA----------------------------------------G-----------------CTACAACAACAGCA-------GC---------------A----GCAG-------------------CA-----------------------------CCG---------------ACAACAGCAG---------------------------ATCA------------ACCCGAAAAACCTG------AG---GAAGAAGGAAAAG------GAGCTCAT------------------------------CCACATCCAGAACTGACGGAAACAAACT---------CCA----------------------------------------------------------------------------------------------------------------------------ACCAAAA-GATACTTTTAG
droRho1 scf7180000779985:259954-260198 - GCAGTA----AA--------ACTAGCCTAAGTA----------------------------G--------------------------------------------------------CAATA-C----------------------CATGACGACAACAATAA--G-CAAGCAG-GAGCAGCAGCAGCA---A---C---------------------------------------------AGCAGCAAC----------TGC----------------------------------------AGCA----ACAGCAG------CA----------A---CAG-C-------AACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA-------------------------------------------------------------------------------ACTGCAGCAGCAGC----------AA-------------------CA--------------------------------------------------------------------------------------------------GCAGCAGCAACATCAACAGCAGCAACAGC------AATATGTG---C---A---------------------A-----------------------------------------------------------CTA--CA------------------------------GCAGCAGCAACATTTGCTGGCCA-GCG-------------------------------------------------ATTCT-GTAG-CTGTTCCCATC
droBia1 scf7180000298389:212940-213200 - AAGCAG----CT--------ATACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCACA-----------------------A--------------------------------------------------------------ACAACAACAACAACAACA-----GCA-------------GCAGC--------------------------------------------------------------------------------------------AGCAGCAGCAACAGCAGCAACAACA----ACAGCAG------------------------------------------CAGCAACAGCAGC----------------A---------GCAG---------------------------CAACAACAGCA--------AC----------AGCAGCAGCAGCAACAACAA-----------------CACACCCAACG----------------GTGCGCAGCAGCAGCAGCAACATCA---------------------------------------------------------------CCAGCAGCAACATCAT------CA---GC------AGCA---------------GC---------------------------------------AGCAGCA------G-CA---------TCA---------------------------------------------CCAACAGCAACGGG------------------------------------------------------------------------TTGTTGCCAGCA
droTak1 scf7180000414450:79787-80035 + CCAAAT----CA--------TCACCAT-------------------------------------------------C------------------A---------TCATCATCATC---ACCA-------CCACCATCACAG---------------------------------------------TCA---A---CT------------------------------------ACAACT------------CCA-ACAACAAC-----------------------------------------------------AG---CAACA----------A---CAG-C-------AGCAACACCAACAACAGCCGCTACACCAACAACAGCA-------------------------------------------------------------------------------ACTGCAACACCAGCAGCA----ACAA-------------------CA--------------------------------------------------------------------------------------------------CCAACAACAACACTAT------CA---GC------AACATGGCATTC---A---------------------A-----------------------------------------------------------CAA--CA------------------------------------------------GGCTA-GCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGCG-------ATGAAC-GCGG-CAGCCGCCGCA
droEug1 scf7180000409246:297978-298238 + GGGCGT----TG--------GCTCACCCGGCA------------------------ATCACACACAGTCACACCAAC------------------A------ACAACAGC----------------------------------------------------T------------------------GCATCA----CA---ACAACAACAACAACACAAGCAACTGCCACCACAG--T------------------------------------------------------------------------------CAC---CAACA----------G-----------------------------------C------AGC-------------------AG------CAGCAGCAGCA---------------------------------------------------ACAACAACAAC-------A----ACACATGA-------------GCTCCCCGCAACATCAAT----ACCAACAACACCAAATATTACACCAACAACAACAATTGCCAAATCATCATCATCATCATCAT------------------------CACCA------------------------------------------------------------------------------TCAA--------------------------------------------------CATCATCAC--------------------------------------------------------------------------------A-------GTCAGCATCTA-CAACTCCAACA
dm3 chrX:12625123-12625356 - TAACAA----CA--------ATAGCAG-------------------------------------------------C------------------A---------ACAGCGGCAAC---AACA-------ACAC--------------------------------ACCAAACGGTGCGCAACAGCAGCA---A---CA------------------------------------ACAACA------------CCA-TCAGCAGCAGCAGCAACATCATC--AGC------------------------AGC------A--------ACGTGTTGTTGC---CAG-CAGCA---------ACCAGCAACAGCAACAACAACAACTACAGCA-------------------------------------------------------------------------------ACAGCAGCAGCAGC-------------------------------------------------------AGCAGCAACAACA---------------------------------------------------------------GCAG------------------CAGCAGC------AG------------------C---------------------------------------AGCAGCA------G-CATGATAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-CATCATTTGCA
droSim2 3r:7321960-7322220 - CACCAA----CA--------ACAACAA-------------------------------------------------TTGCCAAATCACCACCATCA---------TCACCATCACC---ACCA-------CCACCATCACAGTCAGCTAC------------A------------------------ACA---A---C------------------------------------------T------------CCA-ACAACAAC----------------------------------------AGCA----ACAACAA------CA----------A---CAG-C-------AGCAACACCAACAACAGCCGCTACACCAACAACAGCA-------------------------------------------------------------------------------ACTGCAACACCAGC-------------------------------------------------------AGCAGCAACAACA---------------------------------------------------------------CCACCAACAACACTAT------CA---GC------AACATGCCAT---------------------------------------TCAA-------------------------------------------------CA------------------------------CCAGCAATCACAACAGCAGGCTA-GCAAAATCTCATATCGTGGCATTTT------------------------------------------CACCACC
droSec2 scaffold_1:7906649-7906891 + CAATGGTCAGAT--------AATTGGCAA-CT-----------------------------------------------------TTTTGC----T---------TCAGC----------------------------------------------------A------------------------GCAACGC---CA------------------------------------GCAGCAGCAACAGCAACTACT-A---------------------C--AAC------------------------AGT---------------TCACGCTGCAGG---CGG-CGGCAGCA--------CAGCAACAGCAGC----------------A---------GCAG---------------------------CAACAA--------------CAGCA-------------CCAGCAACAACAGC-------------------------------------------------------AGCAGCAACAGCAA--------------GCAACA--------------------------------------------AGTAGCAATTCCTT------GG---GC------AA----------------------------------------------------------------------------GACAT--TACCAG--------------------------------------------TGGCTCTCCGCAACGGAGCCCA-GCAG-T----------------TT------------------------TTG-TCTCC-CAAC-CTGATCGCACA
droYak3 3L:7310923-7311161 - ATGCAA---GCT--------GCGCA-G-------------------------------------------------C------------------A---------GTTGCAGTCTA--CACCT-C----------------------AGCA------------------------------------GCA------------------------------------------------------ACAGCAACTACAAG---------------------C--AAC------------------------A-CCTCAACAG---CAACT----------A---CAAGCAACACCT--------CAACAACAGCAGC----------------A---------ACTA---------------------------CAAGCAG--CTCCTCAACA-------------------GCAGCAGTTGCA-------------------------------------------------------------AGGATCCCAACAACAACAGCAGCAGCAACAGTTGCAGGCACCTCAGCAACAGGGACTG------------------------GGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCAACAC------------------------------------------------------AAGCCGAA-ATATC-CAACCTATGCGCAATA
droEre2 scaffold_4784:17155604-17155851 + TCGCAA---TAT--------GCACCCA-------------------------------------------------C------------------A---------GCCTCACCCATTCCGCCAGCAACGA-------------------CAAC-ACTA------CA------------------CCAGCAACAT---CA------------------------------------GCAACAACAGCAACAACTG------------------------------------------------------------------------------------------------------------CAACACCAACAGC----------------A---------GCAGCAGCAGCAGCAGTACCAGCAACATCAG-----------------CAGCAACTGCAGCA-------GC---------A----------ACAA-------------------CA--------------------------------------------------------------------------------------------------CCAACACCAACACTAT------CT---GC------AACA---------------GCAGCAACAGACCCTGCCACCGCCACCCATACAACACCAGCAATACAA------CACA---------GCG----------------------------------------------------------------------------------------------------------------------------GCCATAA-C-GCCCACATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAACAA----AT--------ACTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CGCCA-C----------------------AACA------------------------------------ACA---------------------------------------------------ACAACAACAAC----------------------TGT---TAACTGTAGCAGCGCCTGCGACAACAACA----ACAGCAG------------------------------------------CAGCAACAGCAAC----------------A---------ACAA---------------------------CAACAACAACATCTCAGCA-------------------GCAGCAACTGCAG---------------------------------------------T--------------GCAACAACAACAACAACA------------------------------------------------------ACAGCAGCAACA-----------------------------------------------------------------------------------------------------------------------ATTCAAAACATTTCAATTACATTGCAG------CTAGTTCGGCTCCAACCGATGA---------------------------------------------------GGACAAC-CCACC-CGAGCTATCTCCCACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATTGCAG------CTAGTTCGGCTC...........................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTGTAGCAGCGCCTGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTGCAG------CTAGTTCGGCTCCAACCGAA...................................................................................3011.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGA---------------------------------------------------GGACAAC-CCACC-CGAGCTAT........2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAG------CTAGTTCGGCTCCAACC......................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------GGACAAC-CCACC-CGAGCTATCTCC....2611.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC-CCACC-CGAGCTATCTCCCAC.2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGT---TAACTGTAGCAGCGCCTGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGCA-------------------GCAGCAACTGCAG---------------------------------------------T--------------GCAACA.............................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTACATTGCAG------CTAGTTCGGCTCC..........................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGCA-------------------GCAGCAACTGCAG---------------------------------------------T--------------...................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCA-------------------GCAGCAACTGCAG---------------------------------------------T--------------GC.................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAG------CTAGTTCGGCTCCAAC.......................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------CTAGTTCGGCTCCA.........................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAG---------------------------------------------T--------------GCAACAACAACAA......................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACA------------------------------------------------------ACAGCA.....................................................................................................................................................................................................................................................................22200.153003000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CGACAACAACA----ACAGCAG------------------------------------------CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------ACAGCAGCAACA-----------------------------------------------------------------------------------------------------------------------ATT.....................................................................................................................................1990.111001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................A------------------------------------ACA---------------------------------------------------ACAACAACAAC----------------------TGT---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACA------------------------------------------------------ACAGCAGCA..................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC----------------A---------ACAA---------------------------CAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------T--------------GCAACAACAACAACAAC..................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAACAACA----ACAGCAG------------------------------------------CAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ACAACA----ACAGCAG------------------------------------------CAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CCA-C----------------------AACA------------------------------------ACA---------------------------------------------------ACAACAACAAC----------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CAAC----------------A---------ACAA---------------------------CAACAACAACATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................A----ACAGCAG------------------------------------------CAGCAACAGCAAC----------------A---------ACAA---------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACA----ACAGCAG------------------------------------------CAGCAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................A----ACAGCAG------------------------------------------CAGCAACAGCAAC----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAACA------------------------------------------------------ACAGCA.....................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
AAACAA----AT--------GCTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CGCCA-C----------------------AACA------------------------------------ACA---------------------------------------------------ACAACAACAAT----------------------TGC---TCAATGCAGCAGCAGCAGCAGCTACAACA----AC--------------------------------------G--------CAGCAGCAGCAGC----------------A---------GCAA---------------------------CAAGAATTGC--CA-AGCAGCAGCAGCAGCA-------GT---------------A----ACAA-------------------CA--------------------------------------------------------------------------------------------------TCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------ATTCAACACATTTCAATTACATTGC-------------------------------------------------------------------------------------------------------AGCTAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................GC----------------A---------GCAA---------------------------CAAGAATTGC--CA-AGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................................................................................................GCTACAACA----AC--------------------------------------G--------CAGCAGCAGCAGC----------------A---------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATTGC--CA-AGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAA---------------------------CAAGAATTGC--CA-AGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
AAACAA----AT--------ACTCGCCTAATTTCA-----T---------------GTCTCA--------------------------------------------------------CACCA-C----------------------TACA------------------------------------ACG---A---CA------------------------------------ACAACAACAACAACAAC----------------------TGC---TAAATGCAACAGCGCCTGCAACAACAACA----ACAACAA------------------------------------------TAGCAACAGCAGT----------------A---------GCAA---------------------------CAACAACTGCA--------GC-------------------------AGCA----------------------------------------------------------------GCAGCAA--------------A-----------------------------------------------CCAGCAGCAGCAC----------A---AC------AACA---------------AGAACA--------------------------------------------------------------ACAACGACCATTCAAAACAATTACTTTACATTACAG------CTA---------------------------------------------------------------------------------GCCA-------AAGCAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------AGAACA--------------------------------------------------------------ACAACGACCATTCA...................................................................................................................................2311.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------CAACAACTGCA--------GC-------------------------AGCA----------------------------------------------------------------GCAGCAA--------------A-----------------------------------------------C..........................................................................................................................................................................................................................................................................2811.00110
..............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGT----------------A---------GCAA---------------------------CAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110
droWil2
CAGCAA----CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GCAACAA---CA------------------------------------ACAGCAGCAACAACAACTGCA-G---------------------C--AGC------------------------AACAATTGCAGCAACAACA----------A---CAA-C-------AGCAG---CAACAACAACAGC----------------A---------GCAGCAACAACAGCATCAGCA------------------------------------------------ACAGCAACAGCA--------------GCAACGAATGCAACAGCAACA-----------------------------------------GCAACAGCAGCAACAATTGCAGCAACAACAACAACAGCAACAA------------------------CAACAACAGCAGCAACAA----------------------------------------------------------------------------------CA---------ACA----------------------------------------------------------------------------------------------------------------------------GCTGCAA-CAACAACAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------CAACAACAGCAGCAACA................................................................................................................................................................................................................................................18200.30600060
........................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACA----------A---CAA-C-------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.20202000
....AA----CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.20404000
...........................................................................................................AGC----------------------------------------------------A------------------------GCAACAA---CA------------------------------------ACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.20400040
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACAACAACAGC..............................................................................................................................................................................................................................................................................................24100.20202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAACAACAACAACAGCAACAA------------------------CA...............................................................................................................................................................................................................................................................2860.17101000
............................................................................................................................................................................................CAACAA---CA------------------------------------ACAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300030
............................................................................................................................................................................................CAACAA---CA------------------------------------ACAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300030
.................................................................................................................................................................................................A---CA------------------------------------ACAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300030
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAACAACAACAACAGCAACA..........................................................................................................................................................................................................................................................................................2580.13101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAATGCAACAGCAACA-----------------------------------------GCAAC...............................................................................................................................................................................................................................................................................................................................2580.13101000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA------------------------------------------------ACAGCAACAGCA--------------GCAACGAA..........................................................................................................................................................................................................................................................................................................................................................................................2690.11100010
........................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACA----------A---CAA-C-------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.10101000
..........................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGC----------------A---------GCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200011
.....................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAACAACA----------A---CAA-C-------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.10101000
.....................................................................................................................................................................................................................................................CAACAACTGCA-G---------------------C--AGC------------------------AACAATTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
.AGCAA----CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAA----------------------------------------------------------------------------------CA---------ACA----------------------------------------------------------------------------------------------------------------------------...................20200.10200020
......................................................................................................................................................................................................................................................................................................................................................CAA-C-------AGCAG---CAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAACAACAACAACAGC..............................................................................................................................................................................................................................................................................................27100.10101000
..........................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGC----------------A---------GCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACAACAACAG...............................................................................................................................................................................................................................................................................................23100.10101000
................................................................................................................................................................................................................................................................................................................................CAACAACA----------A---CAA-C-------AGCAG---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGC----------------A---------GCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------------------ACAGCAACAGCA--------------GCAACG............................................................................................................................................................................................................................................................................................................................................................................................22110.09100010
................................................................................................................................................................................................................................................................................................................................................................................CAACAGC----------------A---------GCAGCAACAACAGCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08100010
........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAGCA------------------------------------------------ACAGCAACAGCA--------------G.................................................................................................................................................................................................................................................................................................................................................................................................27120.08100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCATCAGCA------------------------------------------------ACAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA----------------------------------------------------------------------------------CA---------ACA----------------------------------------------------------------------------------------------------------------------------GCTGCAA-C..........18130.08100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACAACA...................................................................................................................................................................................................................................................................................................19130.08100010
........................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACA----------A---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.08100010
........................................................................................................TGCAGC----------------------------------------------------A------------------------GCAACAA---CA------------------------------------ACAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCATCAGCA------------------------------------------------ACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................22140.07100010
..................................................................................................AACAACTGCAGC----------------------------------------------------A------------------------GCAACAA---CA------------------------------------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-----------------------------------------GCAACAGCAGCAACAATT..................................................................................................................................................................................................................................................................................................................25160.06100010
........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAGCA------------------------------------------------ACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................19170.06100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAACA-----------------------------------------GCAACAGCAGC.........................................................................................................................................................................................................................................................................................................................24170.06101000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAGCA------------------------------------------------ACAGCAACAGCA--------------G.................................................................................................................................................................................................................................................................................................................................................................................................23170.06101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCA------------------------------------------------ACAGCAACAGCA--------------GCAAC.............................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
......................................................................................................................................................................................................................................................................................................................................................CAA-C-------AGCAG---CAACAACAACAGC----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...........A--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.............................................................................................................................................................................................................................................................................................................................CAGCAACAACA----------A---CAA-C-------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...................................................................................................................................................................................................................................................AACAACAACTGCA-G---------------------C--AGC------------------------AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................................................................................AACAACTGCA-G---------------------C--AGC------------------------AACAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA-----------------------------------------GCAACAGCAGCA........................................................................................................................................................................................................................................................................................................................22200.05100010
.........................AG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCA------------------------------------------------ACAGCAACAGCA--------------GC................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................AACAACAGC----------------A---------GCAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................................................................AACAACTGCA-G---------------------C--AGC------------------------AACAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
...............................................................................................AACAACAACTGCAGC----------------------------------------------------A------------------------GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................CAACAACAGC----------------A---------GCAGCAACAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACA-----------------------------------------GCAACAGCAGCA........................................................................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................ACAACAGC----------------A---------GCAGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAACA..........................................................................................................................................................................................................................................................................................20200.05100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAGCA.............................................................................................................................................................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................CAACAACTGCA-G---------------------C--AGC------------------------AACAATTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
......................................................................................................................................................................................................................................................................................................................................CA----------A---CAA-C-------AGCAG---CAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
.....................CAACAG-------------------------------------------------C------------------AACAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.........................AG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................................................................................................................................................................................G---CAACAACAACAGC----------------A---------GCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...............................................................................................................................................................................................................................................................................................................................GCAACAACA----------A---CAA-C-------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------GCAACAGCAGCAACAATTG.................................................................................................................................................................................................................................................................................................................20200.05101000
.......................ACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................................................................................................................................................................................................................................................................................................A----------A---CAA-C-------AGCAG---CAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAACA-----------------------------------------GCAACAGC............................................................................................................................................................................................................................................................................................................................21200.05101000
..................................................................................................................................................................A------------------------GCAACAA---CA------------------------------------ACAGCAGCAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................AG---CAACAACAACAGC----------------A---------GCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAA------------------------CAACAACAGCAGCA...................................................................................................................................................................................................................................................24200.05100010
.......................................................................................................................................................................................................................................................................................................................................................AA-C-------AGCAG---CAACAACAACAGC----------------A---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAA------------------------CAACAACAGCAGC....................................................................................................................................................................................................................................................24200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAA------------------------CA...............................................................................................................................................................................................................................................................20200.05101000
......................AACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................................................................................................................AGCAACAACA----------A---CAA-C-------AGCAG---CAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...........A--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAACAACAACAGC----------------A---------GCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAA----------------------------------------------------------------------------------CA---------ACA----------------------------------------------------------------------------------------------------------------------------GC.................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA------------------------CAACAACAGC.......................................................................................................................................................................................................................................................19200.05100010
................................................................................................................................................................................................................................................AGCAACAACAACTGCA-G---------------------C--AGC------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
......................AACAG-------------------------------------------------C------------------AACAACAACTGCAGC----------------------------------------------------A------------------------GCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.AGCAA----CA--------ACAACAG-------------------------------------------------C------------------AACAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
................................................................................................................................................................................................AA---CA------------------------------------ACAGCAGCAACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................AGCAACAACAACTGCA-G---------------------C--AGC------------------------AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
....................................................................................................................................................................................................................................................................................................................................AACA----------A---CAA-C-------AGCAG---CAACAACAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................AACAGC----------------A---------GCAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...................................................................................................................................................................................................................................................................................................................................................................GCAG---CAACAACAACAGC----------------A---------GCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGC----------------A---------GCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA------------------------CAACAACAGCAGCAAC.................................................................................................................................................................................................................................................25200.05100010
.............................................................................................................................................................................................AACAA---CA------------------------------------ACAGCAGCAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------CAACAACAGCAGCAACA................................................................................................................................................................................................................................................19200.05101000
..............................................................................................................................................................................................................................................................................................................................AGCAACAACA----------A---CAA-C-------AGCAG---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................CAGCAACAACA----------A---CAA-C-------AGCAG---CAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAGCA.............................................................................................................................................................................................................................................................................................18200.05101000
...............................................................................................................................................................................................................................................................................................................................GCAACAACA----------A---CAA-C-------AGCAG---CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
............................................................................................................................................................................................................................................................................................................................GCAGCAACAACA----------A---CAA-C-------AGCAG---CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................................................................................................................................................................................................................................................................................................................................G---CAACAACAACAGC----------------A---------GCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------CAACAACAGCAGCAACAA----------------------------------------------------------------------------------CA---------..................................................................................................................................................21200.05101000
dp5
AAACAA----CA--------GCACCAA-------------------------------------------------A------------------A---------ACATCGAAAATAACGCCAACAAAAA-------------------CACCGACAA------CA------------------ACAGAACCTA---GA------------------------------------ACAACAACAACACCAACAA------------------------------------------------------------------------------------------------------------CAACAGCAACATC----------------A---------ACAACAACAAACGCAACACCA---------------------------------------------------AAAACAACAAC-------A----GCACCTAAAACAACAACAACA-------------TC-------A------ACA---------------ACAACAACAA---------------------------ATCAAACAATAACACCAAAAACAAC------------A---C------AAACAG------CAACACCA------------------------------ACAACACCAACAATATCA------C-CA---------ACA----------------------------------------------------------------------------------------------------------------------------ACTAAAC-CAACATCCACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................A------------------------------------ACAACAACAACACCAACAA------------------------------------------------------------------------------------------------------------CAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010001000000
.............................................................................................................................................................................................................................................AACAACAACACCAACAA------------------------------------------------------------------------------------------------------------CAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------------TC-------A------ACA---------------ACAACAACA.....................................................................................................................................................................................................................................................................................................................18200.0510100000000
droPer2
AAGCAG----CT--------GCCAATATTGC----------------------------------------------------------------A---------ACAAC----------------------------------------------------A------------------------GCAACTT---CA------------------------------------GCAACAACAACAACAACTGCA-A---------------------C--TTC------------------------------------------------------------------------------AACAACAACAGC------AAC-------AACAACAGCAACTG------------------CAACTTCAG-----------------CAACAACAACAACA-------ACAACAACACCAAC----A-----------AGCA-------------GCGCCCCGCAATGCGAAT----G--T---ACAACCAGAACATCAACAAAACCAACAACTAAT-----------------------------------------GACTTC------------T---A------TTGCGG------CCGTGCCCTCAGCAGCGGCGACT------------------------------------------A---------ACA----------------------------------------------------------------------------------------------------------------------------ACAGCAG-CACCACCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAC----A-----------AGCA-------------GCGCCCCGCAA..................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................................................................................................................................................................................AACAACAACAACTGCA-A---------------------C--TTC------------------------------------------------------------------------------AACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAC----A-----------AGCA-------------GCGCCCCGCAC..................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACA-------ACAACAACACCAAC----A-----------..............................................................................................................................................................................................................................................................................................................................................................................................2850.201010000
droAna3
CCGATG----CT--------GCAGCCG-------------------------------------------------C------------------ACCAGCTTCAGTTGC----------------------------------------------------A------------------------ACAGCTC---CA------------------------------------GCAGCAGCAACAACAGATGCA-G---------------------C--AGC------------------------AGC------AC---CAACT----------GATGCAG-A-------TGCAGCAACAGCAACAGCACCAACAACAGCATCAGCA-------------------------------------------------------------------------------GCAGCAACACCAGC-------------------------------------------------------AGTTGCAACACCA---------------------------------------------------------------GCAA---CAGCA---------------AC------AACA---------------GCAGCAACAGACCACGCCAT----------ATAA--------------------------------------------CGC--CA-----------AATTCCCGAACTCACTGTTCCGGCCGCTACAGGATCAGGCCA------A----------------CTACG---------CCAACACC------G-GCTCC-CTGC-CAGATCTCACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------CTACG---------CCAACACC------G-GCTCC-C...............2120.501100000
..............................................................................................................................................................................................GCTC---CA------------------------------------GCAGCAGCAACAACAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACGCCAT----------ATAA--------------------------------------------CGC--C.................................................................................................................................1920.501010000
...........................................................................................................................................................................................ACAGCTC---CA------------------------------------GCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501010000
...........................................................................................................TGC----------------------------------------------------A------------------------ACAGCTC---CA------------------------------------GCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
..................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------------------------------------------------------------------------------GCAGCAACACCAGC-------------------------------------------------------AGT....................................................................................................................................................................................................................................................................................................................................................2230.331001000
..............................................................................................................................................................................................................................................................................................................................................................................................GCATCAGCA-------------------------------------------------------------------------------GCAGCAACACC.................................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
...............................................................................................................................................................................................................................................................................................................................................................................................CATCAGCA-------------------------------------------------------------------------------GCAGCAACACCA................................................................................................................................................................................................................................................................................................................................................................................................................2050.201100000
............................................................................................................GC----------------------------------------------------A------------------------ACAGCTC---CA------------------------------------GCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171100000
.........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAGCA-------------------------------------------------------------------------------GCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................19170.061010000
..........................................................................................................................................................................................................................................................................................................................................................................................AACAGCATCAGCA-------------------------------------------------------------------------------GCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................18180.061010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------AC------AACA---------------GCAGCAACA............................................................................................................................................................................................................19200.051000001
droBip1
ACGCAG----CA--------ACAAGCTCAGC----------------------------------------------------------------A---------ACAGCAAATGAT-------------------------TCAGCAGC------------A------------------------GCA---A---CA------------------------------------ACAACA------------GCA-GCAGCAGC-----------------------------------------------------AA---CAACA----------A---CAG-C-------AGCAGCAACAACAACAGCAGCTGCAGCAACAACAGCA-------------------------GTT---------------------------------------------------GCAACAACAACAGC---A----GCAG-------------------CA-----------------------------ACAAC---------------------------------------------------------------------AACAGCAGTTA------CA---GC------AA------------------CAACAACCGATCATGCAACAAGATC-----------------------------------------------------C-----------------------------------CCAGCAGCAACAGCAGT---------------------------------------------------CGCCAAG-GCTGC-CGACCACTCCCACAGGSizeHit CountTotal NormTotal
No Reads
droKik1
GAACCA---GATACCCTTTGGCGCCGGCACCA-----------------------------------------------------A--------------------------------------------------------------TCAGCAGCAGCTTCA------------------------GCAGCTC---CA------------------------------------GCAGCAGCAGCAGCAACAACA-G---------------------C--AGC------------------------AAC---------------T----------C---CA--------------------GCAGCAACAGC------AAC-------A---------ACAG---------------------------CAGCAACAGCA--------AC----------TCCTGCAGCAGCAACAGCAGC-------------------------------------------------------AGCAGCAACT------------------------------------------------------------------CCAACAGCAAATCCTA------CA---GC------AGCAG------C---A--------------------------------------------------------------------------------ACTC--CA------------------------------GCAGCAGCCCTCGTTGCAAGCCTCGCCCAGTCACAATG-------------------------CCACC------AATCTGCTGCGC-CGCGCCTCCCASizeHit CountTotal NormTotal
No Reads
droFic1
CTACAG----CT--------GCAACTA-------------------------------------------------C------------------T---------GCTGCA----------------------------------------------------------------------------GCAACTA---CA------------------------------------ACAGCAGCAACAACAACTGCA-G---------------------C--AAC------------------------AACCACTGCAG---CAACT----------A---CAA-C-------AGCAGCTACAACAACAGCAGCTACAACAACAGCAGCA-------------------------------------------------------------------------------------ACTACAAC----AGCG----GCAACAACTA---------CT--------------------------------------------GCGGCAACAACAACTGCT---------------------------------------G---C---------------AACAAC------TACAG------CTGCAACAACAACAGCGGCAACT---------------------------------------A-CT---------ACC----------------------------------------------------------------------------------------------------------------------------GCTGCAA-CAACCACAGCASizeHit CountTotal NormTotal
No Reads
droEle1
AAAAAT--------------ACTCGACTAATTTCA-----T---------------GTCTCG--------------------------------------------------------CGACG-C----------------------CACAACA---------------------------------ACA---ACTACAACA---------------------------------ACA--AACAGCAGC---------------------------------------------------------------------AG---CATCA----------T---CAT-C-------AGCAGCTACAGCTACAGCAGCAACAGCTACAGCTACA----------------------------------------G-----------------CTACAACAACAGCA-------GC---------------A----GCAG-------------------CA-----------------------------CCG---------------ACAACAGCAG---------------------------ATCA------------ACCCGAAAAACCTG------AG---GAAGAAGGAAAAG------GAGCTCAT------------------------------CCACATCCAGAACTGACGGAAACAAACT---------CCA----------------------------------------------------------------------------------------------------------------------------ACCAAAA-GATACTTTTAGSizeHit CountTotal NormTotal
No Reads
droRho1
GCAGTA----AA--------ACTAGCCTAAGTA----------------------------G--------------------------------------------------------CAATA-C----------------------CATGACGACAACAATAA--G-CAAGCAG-GAGCAGCAGCAGCA---A---C---------------------------------------------AGCAGCAAC----------TGC----------------------------------------AGCA----ACAGCAG------CA----------A---CAG-C-------AACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA-------------------------------------------------------------------------------ACTGCAGCAGCAGC----------AA-------------------CA--------------------------------------------------------------------------------------------------GCAGCAGCAACATCAACAGCAGCAACAGC------AATATGTG---C---A---------------------A-----------------------------------------------------------CTA--CA------------------------------GCAGCAGCAACATTTGCTGGCCA-GCG-------------------------------------------------ATTCT-GTAG-CTGTTCCCATCSizeHit CountTotal NormTotal
No Reads
droBia1
AAGCAG----CT--------ATACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCACA-----------------------A--------------------------------------------------------------ACAACAACAACAACAACA-----GCA-------------GCAGC--------------------------------------------------------------------------------------------AGCAGCAGCAACAGCAGCAACAACA----ACAGCAG------------------------------------------CAGCAACAGCAGC----------------A---------GCAG---------------------------CAACAACAGCA--------AC----------AGCAGCAGCAGCAACAACAA-----------------CACACCCAACG----------------GTGCGCAGCAGCAGCAGCAACATCA---------------------------------------------------------------CCAGCAGCAACATCAT------CA---GC------AGCA---------------GC---------------------------------------AGCAGCA------G-CA---------TCA---------------------------------------------CCAACAGCAACGGG------------------------------------------------------------------------TTGTTGCCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CCAAAT----CA--------TCACCAT-------------------------------------------------C------------------A---------TCATCATCATC---ACCA-------CCACCATCACAG---------------------------------------------TCA---A---CT------------------------------------ACAACT------------CCA-ACAACAAC-----------------------------------------------------AG---CAACA----------A---CAG-C-------AGCAACACCAACAACAGCCGCTACACCAACAACAGCA-------------------------------------------------------------------------------ACTGCAACACCAGCAGCA----ACAA-------------------CA--------------------------------------------------------------------------------------------------CCAACAACAACACTAT------CA---GC------AACATGGCATTC---A---------------------A-----------------------------------------------------------CAA--CA------------------------------------------------GGCTA-GCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGCG-------ATGAAC-GCGG-CAGCCGCCGCASizeHit CountTotal NormTotal
No Reads
droEug1
GGGCGT----TG--------GCTCACCCGGCA------------------------ATCACACACAGTCACACCAAC------------------A------ACAACAGC----------------------------------------------------T------------------------GCATCA----CA---ACAACAACAACAACACAAGCAACTGCCACCACAG--T------------------------------------------------------------------------------CAC---CAACA----------G-----------------------------------C------AGC-------------------AG------CAGCAGCAGCA---------------------------------------------------ACAACAACAAC-------A----ACACATGA-------------GCTCCCCGCAACATCAAT----ACCAACAACACCAAATATTACACCAACAACAACAATTGCCAAATCATCATCATCATCATCAT------------------------CACCA------------------------------------------------------------------------------TCAA--------------------------------------------------CATCATCAC--------------------------------------------------------------------------------A-------GTCAGCATCTA-CAACTCCAACASizeHit CountTotal NormTotal
No Reads
dm3
TAACAA----CA--------ATAGCAG-------------------------------------------------C------------------A---------ACAGCGGCAAC---AACA-------ACAC--------------------------------ACCAAACGGTGCGCAACAGCAGCA---A---CA------------------------------------ACAACA------------CCA-TCAGCAGCAGCAGCAACATCATC--AGC------------------------AGC------A--------ACGTGTTGTTGC---CAG-CAGCA---------ACCAGCAACAGCAACAACAACAACTACAGCA-------------------------------------------------------------------------------ACAGCAGCAGCAGC-------------------------------------------------------AGCAGCAACAACA---------------------------------------------------------------GCAG------------------CAGCAGC------AG------------------C---------------------------------------AGCAGCA------G-CATGATAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-CATCATTTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------G-CATGATAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-CA.........2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000100000000000000000100000000
.....................................................................................................................................C--------------------------------ACCAAACGGTGCGCAACAGCAGCA---A---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................A---CA------------------------------------ACAACA------------CCA-TCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................CAGCAACATCATC--AGC------------------------AGC------A--------ACGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------G-CATGATAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-C..........2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-CATCATTTGC.2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------G-CATGATAATGGACCAA--------------------------------------------CGTC--------------------------------------------------------------------------------C-CA.........3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCAACATCATC--AGC------------------------AGC------A--------ACGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGCAACATCATC--AGC------------------------AGC------A--------ACGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................C---AACA-------ACAC--------------------------------ACCAAACGGTGCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A---A---CA------------------------------------ACAACA------------CCA-TCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GCA---A---CA------------------------------------ACAACA------------CCA-TCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
............................................................................................................................................................................................................................................CAACA------------CCA-TCAGCAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AGCAGCA------G-CATGATAATGGA.................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100
...........................................................................................................................................................................................GCA---A---CA------------------------------------ACAACA------------CCA-TCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................TC--AGC------------------------AGC------A--------ACGTGTTGTTGC---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
...............................................................................................................................................................................................................................................CA------------CCA-TCAGCAGCAGCAGCAACATCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AACGGTGCGCAACAGCAGCA---A---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CAAACGGTGCGCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGCAACATCATC--AGC------------------------AGC------A--------ACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGC---CAG-CAGCA---------ACCAGCAACAGCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................A--------ACGTGTTGTTGC---CAG-CAGCA---------ACCAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................ACAC--------------------------------ACCAAACGGTGCGCAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CA--------ATAGCAG-------------------------------------------------C------------------A---------ACAGCGGCAAC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GCA---A---CA------------------------------------ACAACA------------CCA-TCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CA-------ACAC--------------------------------ACCAAACGGTGCGCAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................A--------ACGTGTTGTTGC---CAG-CAGCA---------ACCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGC---CAG-CAGCA---------ACCAGCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGC---CAG-CAGCA---------ACCAGCAACAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAACAA----CA--------ATAGCAG-------------------------------------------------C------------------A---------ACAGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAA----CA--------ATAGCAG-------------------------------------------------C------------------A---------ACAGCGGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................C--------------------------------ACCAAACGGTGCGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CA------------CCA-TCAGCAGCAGCAGCAACATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................CGGTGCGCAACAGCAGCA---A---CA------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GCAGCAGCAACATCATC--AGC------------------------AGC------A--------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TCATC--AGC------------------------AGC------A--------ACGTGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ACA------------CCA-TCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2031.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000
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.................................................................................................................................................................................................................................................................TCAGCAGCAGCAGCAACATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA---------------------------------------------------------------GCAG------------------CAGCAGC------........................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
........................................................................................................................................................................................................................................................................CAGCAGCAACATCATC--AGC------------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-------------------------------------------------------AGCAGCAACAACA---------------------------------------------------------------GC.........................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................................................................................................................................................................................................................................................................AGCAGCAACATCATC--AGC------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CA------------CCA-TCAGCAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GCAGCAACATCATC--AGC------------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TACAGCA-------------------------------------------------------------------------------ACAGCAGCAGCAGC-------------------------------------------------------AGT....................................................................................................................................................................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................A-TCAGCAGCAGCAGCAACATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
CACCAA----CA--------ACAACAA-------------------------------------------------TTGCCAAATCACCACCATCA---------TCACCATCACC---ACCA-------CCACCATCACAGTCAGCTAC------------A------------------------ACA---A---C------------------------------------------T------------CCA-ACAACAAC----------------------------------------AGCA----ACAACAA------CA----------A---CAG-C-------AGCAACACCAACAACAGCCGCTACACCAACAACAGCA-------------------------------------------------------------------------------ACTGCAACACCAGC-------------------------------------------------------AGCAGCAACAACA---------------------------------------------------------------CCACCAACAACACTAT------CA---GC------AACATGCCAT---------------------------------------TCAA-------------------------------------------------CA------------------------------CCAGCAATCACAACAGCAGGCTA-GCAAAATCTCATATCGTGGCATTTT------------------------------------------CACCACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCTACACCAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
CAATGGTCAGAT--------AATTGGCAA-CT-----------------------------------------------------TTTTGC----T---------TCAGC----------------------------------------------------A------------------------GCAACGC---CA------------------------------------GCAGCAGCAACAGCAACTACT-A---------------------C--AAC------------------------AGT---------------TCACGCTGCAGG---CGG-CGGCAGCA--------CAGCAACAGCAGC----------------A---------GCAG---------------------------CAACAA--------------CAGCA-------------CCAGCAACAACAGC-------------------------------------------------------AGCAGCAACAGCAA--------------GCAACA--------------------------------------------AGTAGCAATTCCTT------GG---GC------AA----------------------------------------------------------------------------GACAT--TACCAG--------------------------------------------TGGCTCTCCGCAACGGAGCCCA-GCAG-T----------------TT------------------------TTG-TCTCC-CAAC-CTGATCGCACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........AT--------AATTGGCAA-CT-----------------------------------------------------TTTTGC----T---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
...........................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC----------------A---------GCAG---------------------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530003
.................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------A---------GCAG---------------------------CAACAA--------------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
....................................................................................................................................................................................................................................................................................................................................................................................AGC----------------A---------GCAG---------------------------CAACAA--------------CAGCA-------------............................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC-------------------------------------------------------AGCAGCAACAGCA..........................................................................................................................................................................................................................................................................................................................................20200.0510010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC-------------------------------------------------------AGCAGCAACAG............................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
ATGCAA---GCT--------GCGCA-G-------------------------------------------------C------------------A---------GTTGCAGTCTA--CACCT-C----------------------AGCA------------------------------------GCA------------------------------------------------------ACAGCAACTACAAG---------------------C--AAC------------------------A-CCTCAACAG---CAACT----------A---CAAGCAACACCT--------CAACAACAGCAGC----------------A---------ACTA---------------------------CAAGCAG--CTCCTCAACA-------------------GCAGCAGTTGCA-------------------------------------------------------------AGGATCCCAACAACAACAGCAGCAGCAACAGTTGCAGGCACCTCAGCAACAGGGACTG------------------------GGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCAACAC------------------------------------------------------AAGCCGAA-ATATC-CAACCTATGCGCAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCAGCAACAGGGACTG------------------------.................................................................................................................................................................................................................................................................1911.00101000000000
..................................................................................................................TA--CACCT-C----------------------AGCA------------------------------------GCA------------------------------------------------------ACAGCAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------GCAGCAGTTGCA-------------------------------------------------------------AGGATCCC...........................................................................................................................................................................................................................................................................................................................................2111.00100000100000
droEre2
TCGCAA---TAT--------GCACCCA-------------------------------------------------C------------------A---------GCCTCACCCATTCCGCCAGCAACGA-------------------CAAC-ACTA------CA------------------CCAGCAACAT---CA------------------------------------GCAACAACAGCAACAACTG------------------------------------------------------------------------------------------------------------CAACACCAACAGC----------------A---------GCAGCAGCAGCAGCAGTACCAGCAACATCAG-----------------CAGCAACTGCAGCA-------GC---------A----------ACAA-------------------CA--------------------------------------------------------------------------------------------------CCAACACCAACACTAT------CT---GC------AACA---------------GCAGCAACAGACCCTGCCACCGCCACCCATACAACACCAGCAATACAA------CACA---------GCG----------------------------------------------------------------------------------------------------------------------------GCCATAA-C-GCCCACATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................CACCCATTCCGCCAGCAACGA-------------------CAAC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCAGCAACATCAG-----------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAA------CACA---------GCG----------------------------------------------------------------------------------------------------------------------------GCCATAA-C-.........2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGTACCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6721000010
...........................................................................................................................................................................................................................................................................................................................................................................AACACCAACAGC----------------A---------GCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.5021000100
.............................................................................................................................................................................................................................................................G------------------------------------------------------------------------------------------------------------CAACACCAACAGC----------------A---------GCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000100
................................................................................................................................................................................................AT---CA------------------------------------GCAACAACAGCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510100000
...........................................................................................................................................................................................................................................................................................................................................................................AACACCAACAGC----------------A---------GCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2511000000
.................................................................................................................................................................................................................................................................................................................................................................................AACAGC----------------A---------GCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040004000
...............................................................................................................................................................................................................................................................................................................................................................................CCAACAGC----------------A---------GCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
....................................................................................................................................................................................................................................................................................................................................................................................AGC----------------A---------GCAGCAGCAGCAGCAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010

Generated: 05/16/2015 at 10:10 PM