ID:

dvi_142

 Coordinate:

scaffold_12954:1866084-1866134 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.4 -13.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_12937:229202-229225 -
  2. dvi_142  scaffold_12954:1866085-1866108 -
star

Sense Strand Reads

CTTCATGGAGTGAGTGGGGGGAATCGAATGGTTTAAATCGCTCCTCTAGGTCCGTGGCGAAAGTTTCAGCGCGTTCTAAGCTCGATCTGGCCCAGGAACCATCTTCTCTTTTTATGGGACTTTTGCGGACGGGCTGTCTTTTAAAGCTTTT
***********************************......(((((((((((((((..(((...)))..))))..........)))))))...))))...................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060674
9x140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
............................................................................TAAGCTCGATCTGGCCCAGGAACC................................................... 24 0 2 10.00 20 1 17 2 0 0 0 0 0 0 0
............................................................................TAAGCTCGATCTGGCCCAGGAACCATC................................................ 27 0 2 4.50 9 2 3 3 0 0 1 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGGAACC................................................... 26 0 2 4.00 8 4 0 4 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGGAACCA.................................................. 27 0 2 4.00 8 8 0 0 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGGAACCATC................................................ 29 0 2 4.00 8 7 0 1 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGGAAC.................................................... 25 0 2 2.50 5 5 0 0 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGG....................................................... 22 0 2 2.50 5 4 0 1 0 0 0 0 0 0 0
.......................TCGAATGGTTTAAATCGCTCCTCTAGG..................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................CTCGATCTGGCCCAGGAACCATCTTC............................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................TAAGCTCGATCTGGCCCAGGAACCATCT............................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................TAAGCTCGATCTGGCCCAGGAACCA.................................................. 25 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0
.........................GAATGGTTTAAATCGCTCCTCTAGG..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................TAAATCGCTCCTCTAGGTCCGTGGC............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAGGAACCAT................................................. 28 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.............................................................................................................TTTTATGGGACTTTTGCGGACG.................... 22 0 3 0.67 2 0 1 0 0 1 0 0 0 0 0
..................................................................CAGCGCGTTCTAAGCTCGATCTGGC............................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................TAAGCTCGATCTGGCCCAGGAACCAT................................................. 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................CTAAGCTCGATCTGGCCCAGGAACC................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGAGCTGGCCCAGGAACCAT................................................. 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................TAAGCTCGCTCTGGCCCAGGAACC................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................................................TCGATCTGGCCCAGGAACC................................................... 19 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................TTTATGGGACTTTTGCGGCCGC................... 22 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TTTTATGGGACTTTTGCGGACGGGC................. 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................CTTTTGCGTACGGGCTGTCTT........... 21 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TGGGACTTTTGCGGACGGGCTGTC............. 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TTTATGGGACTTTTGCGGACGGG.................. 23 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................GGACTTTTGCGGACGGGCTGTC............. 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................CTTTTTATGGGACTTTTGCGG....................... 21 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................TTTATGGGACTTTTGCGGACGG................... 22 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCC.......................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..........................................................................TCTAAGCTCGATCTGGCCCAG........................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....ATGGAGTTAGTGGGGGGAC................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
................................................................................CTCGATCTGGCCCAGGAACCATC................................................ 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...CATGGTGTTAGTGGGGGGA................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
...CATGGTGTTAGTGGGGGGACT............................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
....ATGGTGTTAGTGGGGGGACT............................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0
.....................................................GTGGCGAAAGGTTCCACG................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
.................................................................TCAGCGGGTTCTAGGTTCG................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAAGTACCTCACTCACCCCCCTTAGCTTACCAAATTTAGCGAGGAGATCCAGGCACCGCTTTCAAAGTCGCGCAAGATTCGAGCTAGACCGGGTCCTTGGTAGAAGAGAAAAATACCCTGAAAACGCCTGCCCGACAGAAAATTTCGAAAA
***********************************......(((((((((((((((..(((...)))..))))..........)))))))...))))...................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060688
160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060666
160_males_carcasses_total
 V053
head
 SRR060657
140_testes_total
.............................................................TCAAAGTCGCGCAAGATTCGAGC................................................................... 23 0 2 6.50 13 10 0 2 0 0 0 0 1 0 0 0 0 0
.................................................................AGTCGCGCAAGATTCGAGCTA................................................................. 21 0 2 5.00 10 1 8 0 1 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGTCGCGCAAGATTCGAGCTA................................................................. 25 0 2 3.00 6 2 4 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGCGCAAGATTCGAGCTAGACCG............................................................ 23 0 2 2.50 5 0 3 1 0 0 1 0 0 0 0 0 0 0
......................................................................CGCAAGATTCGAGCTAGACCG............................................................ 21 0 2 2.50 5 0 4 0 0 1 0 0 0 0 0 0 0 0
..............................................................CAAAGTCGCGCAAGATTCGAGC................................................................... 22 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGCGCAAGATTCGAGCTAGACC............................................................. 22 0 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCTGCCCGACAGAAAATTTCGAAA. 24 0 4 1.50 6 6 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCAAAGTCGCGCAAGATTCGAGCTA................................................................. 26 0 2 1.50 3 2 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................GCCTGCCCGACAGAAAATTTCGAAA. 25 0 4 1.25 5 4 0 1 0 0 0 0 0 0 0 0 0 0
................................................CCAGGCACCGCTTTCAAAGTCGCGCAA............................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAAGTCGCGCAAGATTCGAGCTA................................................................. 23 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GGTCCTTGGTAGAAGAGAAAAAT..................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCGCAAGATTCGAGCTAGACCG............................................................ 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCAAAGTCGCGCAAGATTCGAGC................................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TCGCGCAAGATTCGAGCTAGACCG............................................................ 24 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................GGCACCGCTTTCAAAGTCGCGCA............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGCACCGCTTTCAAAGTCGCGC.............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................CCTTAGCTTACCAAATTTAGCGAGGAGA........................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CTTGGTAGAAGAGAAAAATACCCT................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........ACTCACCCCCCTTAGCTTACCAA...................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CCAAAGTCGCGCAAGATTCGAGCTA................................................................. 25 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................GTCGCGCAAGATTCGAGCTA................................................................. 20 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TTTCAAAGTCGCGCAAGATTCGAGCTA................................................................. 27 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................CGCCTGCCCGACAGAAAATTTCGAAA. 26 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TAAAGTCGCGCAAGATTCGAG.................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GGTCGCGCAAGATTCGAGCTA................................................................. 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCTGCCCGACAGAAAATTTCGAAAA 25 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCGCGCAAGATTCGAGCTA................................................................. 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................GTCGCGCAAGATTCGAGCTAGACC............................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TACGCGCAAGATTCGAGCTAGACCG............................................................ 25 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................GTTTTCAAAGTCGCGCAAGATTCGAGC................................................................... 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TTCAAAGTCGCGCAAGATTCG...................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................CTTTCAAAGTCGCGCAAGATTCGAGCTA................................................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACGCCTGCCCGACAGAAAATTTCGAAA. 27 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAAGTCGCGCAAGATTCGAGCTA................................................................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGTCGCGCAAGATTCGAGCT.................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTTCAAAGTCGCGCAAGATTCGAG.................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................GTCGCGCAAGATTCGAGCTAGACCG............................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGTCGCGGAAGATTCGAGC................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TAAAGTCGCGCAAGATTCGAGCTA................................................................. 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCGCAAGATTCGAGCTAGAC.............................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TAAGTCGCGCAAGATTCGAGCTA................................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................CGCTTTCAAAGTCGCGCAAGATTCGAGC................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CCGCTTTCAAAGTCGCGCAAGATTCGAGC................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................CGCAAGATTCGAGCTAGACCC............................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCGCAAGATTCGAGCTAGACC............................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGCGCAAGATTCGAGCTA................................................................. 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................TCGCGCAAGATTCGAGCTA................................................................. 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................TCGCGCAAGATTCGAGCTAGACC............................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGTCGCGCAAGATTCGAGCTA................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTTTCAAAGTCGCGCAAGATTCGAGC................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................TTCGCGCAAGATTCGAGCTAGACCG............................................................ 25 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................ATTCAAAGTCGCGCAAGATTCGAGCTA................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATACAAAGTCGCGCAAGATTCGAGCTA................................................................. 27 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCAAAGTCGCGGAAGATTCGAGC................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAAGTCGCGCAAGATTCGAGC................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AAGTCGCGCAAGATTCGAGCTA................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAAAACGCCTGCCCGACAGAAAA......... 23 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................GCAAACGCCTGCCCGACAGAAAATT....... 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CCTGAAAACGCCTGCCCGACAGAAAA......... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCGACAGAAAATTTCGAAA. 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTTGCCCGACAGAAAATTTCGAAA. 24 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTGCCCGACAGAAAATTTCGAA.. 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCCTGCCCGACAGAAAATTT...... 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACGCCTGCCCGACAGAAAATTTCGAAAA 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGCCTGCCCGACAGAAAATTTCGAAAA 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTGCCCGACAGAAAATTTCGAAAA 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTGCCCGACAGAAAATTTCGAAA. 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGCCCGACAGAAAATTTCGAAAA 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GATGCCTGCCCGACAGAAAATTTCGAAA. 28 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCCTGCCCGACAGAAAATTTCGAAAA 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGCCTGCCCGACAGGAAATTTCGAAA. 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TAGACCGGGTCCTTGGTA................................................. 18 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TAGAGCGGGTCCTTGCTTG................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................GTGGTAGAAGACAAAAAT..................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................CCAGGCACCTCTTTTAAA..................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................AAGCTTGGAGATCCAGGC................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12954:1866034-1866184 - dvi_142 CTTCATGGAG-----------------TG-AGTGGGGGGAATCGAA-TGGTTTAAATCGCTCCTCTAGGTCCGTGGCGAAAGTTTCAGCGCGTTCTAAGCTCGATCTGGCCCAGGAACCATCTTCTCTTTTTATG----GGACTTTTGCGGACGGGCTGTCTTTTAAAGCTTTT
droMoj3 scaffold_6500:27870742-27870893 + CTTCGCGTAG-----------------CATCGTCGGTGTAGTTGAA-TGGCCTGAATCGCTGTTGTAGGCTGTCTGCAAATGTATCAGCTTTTTGCTGGCTGGAGTAGCACCATCTACCTGCCGTATCCTTAATC----GGTACTTTTGAAGCTGCAATTTTTTTAAAGCGACT
droGri2 scaffold_14906:14108387-14108433 - T-----------------------------------------------GGTTTAAAACGTTCCTCGAGGTGCAAGACAAAGGTTTCCGCCTTCT--------------------------------------------------------------------------------
droWil2 scf2_1100000004963:3582274-3582426 + ATTGGCATCT----------------TGTGCGCTGCAGGTGCTGAA-GGGTTTGAACGAATTGGCTAAATGGGTCGCAAACTCTTCAGCTTTGTCCTCACTAGATCTGCACCATAGACCATTTGGTCCTCGGATG----GGGACTTTCCTGACGGTGGGCCTTTTAAGGTATTT
dp5 XL_group3a:2631987-2632138 + CTTCGTGTAA-----------------CAGCAGACGTAAGATTAAA-TGGTTTAAATCTTTGCTCTAAACTGTCTGCGAAGATATCAGCCTTTTGCTGACTGGAGTAGCACCAACCGCCTGCTGGATTTTTAATT----GGCGATTTAGGCATGACTACTCTTTTAAATCGGCT
droPer2 scaffold_55:370913-371064 + CTTCGTGTAA-----------------CAGCAGACGTAAGATTAAA-TGGTTTAAATCATTGCTCTAAACTGTCTGCGAAGATATCAGCCTTTTGCTGACTGGAGTAGCACCAACCGCCTGCTGGATTTTTAATT----GGCGATTTAGGCATGACTACTCTTTTAAATCGGCT
droAna3 scaffold_12943:976886-977038 + ATTTCTAGTG----------------GCGGCTGAAGAAAACTCAAA-CTTCTGAAATCGATTTTGAAGGTTGTCTGCAAACGCTTCCGCGCGCTCAATTGGTGATCTAGCACAAGAACCATCATCTCTCCTGATA----AGAAATTTTGCGGACACCTGTTTTTTAAATTTACT
droBip1 scf7180000396657:2032-2175 + CTCCGGTGAG-----------------CA--------GCGATCGAA-AGGCGTAAAACCACCTTCGAGGTGTTCGGCGAAAGCGTTAGCCCTATCTATCTCCGATCTGCACCAGCTGCCGTCGGTACTTTGTACAGGTGGGATCCTTTTCA-GTGGCTGTCTGATAAAT---TT
droKik1 scf7180000298560:14666-14822 + CTTGAAGACACAAATTATCAG------------GGGCATAATCAAA-GGGCTTAAAACGCTGCTCAAGGTTATCAGCAAACACTTCAGCTTTTTCTAAGCTAGTGCGACACCAGCCCCCAGCCTGATTTCTGATT----GCTGACTTTGGGGAGGACTGCGTTTTGAATCGTTT
droFic1 scf7180000453257:22472-22625 + CTTCGA---------------GATCCTCTGGGCTCGCGAGGTCGAA-TGGCTGAAAGCGTTTCTCTAGTTCGTCCGCGAAAGCTAAAGAAATCTCTGAGTCAGACCTGCACCATGTATCATCAGTTTTCTTTATG----GGAATCTTTCGGAGAGGCTGTCGTTTAATGTTTCG
droEle1 scf7180000490510:18429-18571 + CTTTCC--------------GGT------------GCATAATCGTA-AGGCCGAAAACGCTGCTCAAGGTTTTTAGCGAACACATCAGCTTTCTCCTGGCAATTGCGACACCAGCCACCTTTAATATTTCTTATA----GCTGATTTTGGGGTGGGCTGAGCTTTATACTTTTT
droRho1 scf7180000780212:139-280 - CTTTCA---------------GG------------TGAATAGTCGTAAGGCTT-GAACGTTGCTCGAGGTTGTTAGCGAACGCTTCAGCTTTCTCTAGGCTCGTACGGCACCAGCCACCTGAGGGGTTTTTAATT----GCTGACTTTGGGGTGGGCTGAGCCTTGTACCGTTT
droBia1 scf7180000302274:27840-27984 + CCTCGCGG------------------------CTGGCTAGGTCATA-TGGCTGGAAGCGTCTCTCGAGTTCGTCCGCAAAAGCAGAAGAAATTTCCGTGTCGGACCTGCACCATGTATCGTCAGATTTTTTAATG----GGGATCTTTCGAAGTGGCTGTCGTTTTATATTCCG
droTak1 scf7180000413287:21707-21851 - CTTCATCT------------G------------TGACCAAATCAAA-AGGCTTAAATCTTTCTTCCAAAGAATCAGCGAACTCCTTAGCTATTTCATCATCTTTATTTGCCCAGGTACCGTCCGATCGAAGCAAG----GGAAACTTCTGGAGAGGCTGTCTTTTAAGCCCGCG
droEug1 scf7180000407587:2525-2668 - CTCCGA---------------G----------CTCGCAAGGTTAAA-TGGCTCAAAGCGTTGCTCTAGTTCTTCGGCAAAAGCTAATGAGATCTCTGAGTCTGATTTGCACCATGTACCGTCTGTTTTCTTAATG----GGAATTTTCCTAAGAGGCTGCCTTTTTAATTTCCT
dm3 chr2L:22862336-22862477 - CTGCC---------------GGA------------GTAAGATTCAA-TGGCTTTAATCTATCCTCTAAGCTGCTTGCAAAGATATCGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATA----GGAGCCTTTGGAATAACTTGTCTTTTAAGGTTATT
droSim2 2l:22414935-22415076 + GTGCC---------------GGA------------GTAAGATTCAA-TGGCTTAAATCTATCCTCTAAGCTGCTTGCAAAGATATCAGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATG----GGAGCATTTGGAATAACTTGTCTTTTAAGGTTATT
droSec2 scaffold_4522:1883-2024 + CTGCC---------------GGA------------GTAAGATTCAG-TGGCTTAAATCTGTCCTCTAAGCTGCTTGCAAAGATATCAGCCTTCTCCTGACTGGAGCCACACCAGTCACCAGCCGGATTTCTGATG----GGAGCCTTTGGAATTACTTGTCTTTTAAGGTTATT
droYak3 v2_chrUn_7003:1113-1254 + CTGCC---------------GGA------------GTAAGATTCAA-TGGCTTAAATCTATCCTCTAAACTGCTTGCAAAGATATCGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATG----GGAGCCTTTGGAATAACTTGTCTTTTAAGGTTATT
droEre2 scaffold_4784:24516067-24516208 + CTACC---------------GGA------------GTAAGATTTAT-CGGCTTAAATCTGTCCTCTAAGCTGCTTGCAAAGATATAGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCTGGATTTCTGATA----GGAGCCTTTGAAATAACTTGTCTTTTAAGGCTATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTTCATGGAG-----------------TG-AGTGGGGGGAATCGAA-TGGTTTAAATCGCTCCTCTAGGTCCGTGGCGAAAGTTTCAGCGCGTTCTAAGCTCGATCTGGCCCAGGAACCATCTTCTCTTTTTATG----GGACTTTTGCGGACGGGCTGTCTTTTAAAGCTTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................TAAGCTCGATCTGGCCCAGGAACC.......................................................24210.00201701200000000000000000000000000000000000000000000000000000000000
...............................................................................................TAAGCTCGATCTGGCCCAGGAACCATC....................................................2724.509302300000000000000000000000000000000100000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGGAACC.......................................................2624.008004400000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGGAACCA......................................................2724.008008000000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGGAACCATC....................................................2924.008007100000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGGAAC........................................................2522.505005000000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGG...........................................................2222.505004100000000000000000000000000000000000000000000000000000000000
.........................................TCGAA-TGGTTTAAATCGCTCCTCTAGG.........................................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCGATCTGGCCCAGGAACCATCTTC.................................................2612.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................TAAGCTCGATCTGGCCCAGGAACCATCT...................................................2812.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................TAAGCTCGATCTGGCCCAGGAACCA......................................................2521.503102000000000000000000000000000000000000000000000000000000000000
...........................................GAA-TGGTTTAAATCGCTCCTCTAGG.........................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................TAAATCGCTCCTCTAGGTCCGTGGC.................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAGGAACCAT.....................................................2821.002001100000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTTTATG----GGACTTTTGCGGACG....................2230.672100000000000000000000000000000000000001000000000000000000000000
.....................................................................................CAGCGCGTTCTAAGCTCGATCTGGC................................................................2520.501100000000000000000000000000000000000000000000000000000000000000
...............................................................................................TAAGCTCGATCTGGCCCAGGAACCAT.....................................................2620.501000010000000000000000000000000000000000000000000000000000000000
..............................................................................................CTAAGCTCGATCTGGCCCAGGAACC.......................................................2520.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCGATCTGGCCCAGGAACC.......................................................1960.332200000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTTTATG----GGACTTTTGCGGACGGGC.................2530.331000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................TG----GGACTTTTGCGGACGGGCTGTC.............2430.331000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTATG----GGACTTTTGCGGACGGG..................2330.331000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................GGACTTTTGCGGACGGGCTGTC.............2230.331001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CTTTTTATG----GGACTTTTGCGG.......................2130.331000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................TTTATG----GGACTTTTGCGGACGG...................2230.331000010000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCC..............................................................1930.331001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TCTAAGCTCGATCTGGCCCAG............................................................2130.331001000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCGATCTGGCCCAGGAACCATC....................................................2340.251001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTTCGCGTAG-----------------CATCGTCGGTGTAGTTGAA-TGGCCTGAATCGCTGTTGTAGGCTGTCTGCAAATGTATCAGCTTTTTGCTGGCTGGAGTAGCACCATCTACCTGCCGTATCCTTAATC----GGTACTTTTGAAGCTGCAATTTTTTTAAAGCGACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................TGCAAATGTATCAGCTTTTTGCTGGC..........................................................................26631.17187150100360
...........................................................................GCAAATGTATCAGCTTTTTGCTGGC..........................................................................2562.33141400000
....................................................................................................TGGAGTAGCACCATCTACCTGCCGTA................................................2622.004400000
..........................................................................TGCAAATGTATCAGCTTTTTGCTGGCT.........................................................................2761.8311500060
......................................................................TGTCTGCAAATGTATCAGCTTTTTGC..............................................................................2661.006500010
..........................................................................TGCAAATGTATCAGCTTTTTGCTGGCTG........................................................................2861.006600000
....................................................................................................TGGAGTAGCACCATCTACCTGCCGT.................................................2521.002110000
.........................................................................................................TAGCACCATCTACCTGCCGTATCC.............................................2420.501100000
.............................................................................................TGCTGGCTGGAGTAGCACCATCTAC........................................................2520.501100000
..........................................................................TGCAAATGTATCAGCTTTTTGCTGG...........................................................................2560.503200010
.....................................................................................................GGAGTAGCACCATCTACCTGCCGTA................................................2520.501100000
....................................................................................................TGGAGTAGCACCATCTACCTGCCG..................................................2420.501000010
....................................................................................................TGGAGTAGCACCATCTACCTG.....................................................2120.501100000
...............................................................................................CTGGCTGGAGTAGCACCATCTACC.......................................................2420.501000010
............................................................................CAAATGTATCAGCTTTTTGCTGGC..........................................................................2460.332200000
......................................................................TGTCTGCAAATGTATCAGCTTTTTGCT.............................................................................2760.332200000
.........................................................................CTGCAAATGTATCAGCTTTTTGCTGGC..........................................................................2760.332100010
.............................................................................................................ACCATCTACCTGCCGTATCCT............................................2160.171100000
...........................................................................GCAAATGTATCAGCTTTTTGCTGG...........................................................................2460.171100000
.................................................................................................................TCTACCTGCCGTATCCTTAATC----GGTACTT............................2960.171100000
......................................................................TGTCTGCAAATGTATCAGCTTTTTG...............................................................................2560.171100000
.............................................................................................................ACCATCTACCTGCCGTATCCTTAATC----...................................2660.171100000
.TTCGCGTAG-----------------CATCGTCGGTGTA......................................................................................................................................2260.171100000
...........................................................................GCAAATGTATCAGCTTTTTGCTGGCT.........................................................................2660.171100000
............................................................................CAAATGTATCAGCTTTTTGCTGG...........................................................................2360.171100000
...........................................................................GCAAATGTATCAGCTTTTTGCTG............................................................................2360.171100000
..............................................................................................................CCATCTACCTGCCGTATCCTT...........................................2160.171100000
..............................................................TTGTAGGCTGTCTGCAAATGTATCAGCT....................................................................................2860.171100000
.........................................................................CTGCAAATGTATCAGCTTTTTGCTGGCT.........................................................................2860.171100000
..........................................................................TGCAAATGTATCAGCTTTTTGCTG............................................................................2460.171100000
..........................................................................TGCAAATGTATCAGCTTTTTGCTGGT..........................................................................2660.171000010
...........................................................................GCAAATGTATCAGCTTTTTGCTGGCTGG.......................................................................2860.171100000
.....................................................................CTGTCTGCAAATGTATCAGCTTTTTGC..............................................................................2760.171100000
........................................................TCGCTGTTGTAGGCTGTCTGCAAATG............................................................................................2670.141100000
.................................................................TAGGCTGTCTGCAAATGTATC........................................................................................2180.131010000
droGri2
T-----------------------------------------------GGTTTAAAACGTTCCTCGAGGTGCAAGACAAAGGTTTCCGCCTTCT--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................TTCCTCGAGGTGCAAGACAAAGGTTTC........................................................................................2750.40220
......................................................AAACGTTCCTCGAGGTGCAAGACA................................................................................................2450.20110
droWil2
ATTGGCATCT----------------TGTGCGCTGCAGGTGCTGAA-GGGTTTGAACGAATTGGCTAAATGGGTCGCAAACTCTTCAGCTTTGTCCTCACTAGATCTGCACCATAGACCATTTGGTCCTCGGATG----GGGACTTTCCTGACGGTGGGCCTTTTAAGGTATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................TCTTCAGCTTTGTCCTCACTAGATC....................................................................2541.25505000
.................................TGCAGGTGCTGAA-GGGTTTGAACGA...................................................................................................................2540.75300030
..........................................TGAA-GGGTTTGAACGAATTGGCTAAA.........................................................................................................2640.75303000
..........................................................................................................TGCACCATAGACCATTTGGTCCTCGGA.........................................2750.60303000
............................TGCGCTGCAGGTGCTGAA-GGGTTTGAA......................................................................................................................2740.50201100
..........................................TGAA-GGGTTTGAACGAATTGGCTAAAT........................................................................................................2740.50202000
................................................................................................................................................TTTCCTGACGGTGGGCCTTTTAAGG.....2520.50101000
..........................................TGAA-GGGTTTGAACGAATTGGCTAA..........................................................................................................2540.50202000
.....................................................GAACGAATTGGCTAAATGGGTCGCAAAC.............................................................................................2840.50202000
..................................................................................................................................................TCCTGACGGTGGGCCTTTTAAGGTA...2530.33100010
............................TGCGCTGCAGGTGCTGAA-GGGTTTGA.......................................................................................................................2640.25101000
..............................................................................AACTCTTCAGCTTTGTCCTCACTAGATC....................................................................2840.25101000
....................................................................................TCAGCTTTGTCCTCACTAGATCTGCA................................................................2640.25101000
...............................................................................ACTCTTCAGCTTTGTCCTCACTAGATC....................................................................2740.25101000
.................................TGCAGGTGCTGAA-GGGTTTGAACGAT..................................................................................................................2640.25100010
..........................................................................................................................TGGTCCTCGGATG----GGGACTTTCCTG.......................2540.25101000
....................................................................................TCAGCTTTGTCCTCACTAGATCTGC.................................................................2540.25101000
.....................................................................................................................................TG----GGGACTTTCCTGACGGTGGGCCT............2540.25100010
.............................................................TGGCTAAATGGGTCGCAAACTCTTCAG......................................................................................2740.25101000
...................................................................................TTCAGCTTTGTCCTCACTAGATCTGCATA..............................................................2940.25101000
.............................................................TGGCTAAATGGGTCGCAAACTCTTCA.......................................................................................2640.25101000
..........................................................AATTGGCTAAATGGGTCGCAAACTCT..........................................................................................2640.25101000
.............................................................TGGCTAAATGGGTCGCAAACTCTT.........................................................................................2440.25101000
.............................................................................................................................TCCTCGGATG----GGGACTTTCCTGACGG...................2640.25101000
.................................................................................................................TAGACCATTTGGTCCTCGGATG----GGG................................2540.25100010
...................................................TTGAACGAATTGGCTAAATGGGTCG..................................................................................................2540.25100010
...........................................................................................TGTCCTCACTAGATCTGCACCATAGAC........................................................2740.25101000
............................................................................................GTCCTCACTAGATCTGCACCATAGA.........................................................2540.25101000
..........................................................................CGCAAACTCTTCAGCTTTGTCCTCACTAG.......................................................................2940.25101000
.................................................................................................................TAGACCATTTGGTCCTCGGATG----GG.................................2440.25100010
............................................................TTGGCTAAATGGGTCGCAAACTCT..........................................................................................2440.25100010
...................................................TTGAACGAATTGGCTAAATGGGTCGC.................................................................................................2640.25101000
...........................................GAA-GGGTTTGAACGAATTGGCTAAA.........................................................................................................2540.25101000
......................................................................................................................................G----GGGACTTTCCTGACGGTGGGCCTTTG.........2740.25101000
....................................................................................................TAGATCTGCACCATAGACCATTTGGTCCT.............................................2950.20101000
....................................................................................................TAGATCTGCACCATAGACCATTTGG.................................................2550.20101000
....................................................................................................TAGATCTGCACCATAGACCATTTGGT................................................2650.20101000
..........................................................................................................TGCACCATAGACCATTTGGTCCTCGG..........................................2650.20101000
................................................................................................TCACTAGATCTGCACCATAGACCAT.....................................................2550.20100010
................................................................................................TCACTAGATCTGCACCATAGACCATT....................................................2650.20101000
dp5
CTTCGTGTAA-----------------CAGCAGACGTAAGATTAAA-TGGTTTAAATCTTTGCTCTAAACTGTCTGCGAAGATATCAGCCTTTTGCTGACTGGAGTAGCACCAACCGCCTGCTGGATTTTTAATT----GGCGATTTAGGCATGACTACTCTTTTAAATCGGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGGTT..........................................................................................................................27122.002202110000000
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGG............................................................................................................................2535.001501410000000
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGGT...........................................................................................................................2614.0040200101000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTACTC.............2724.0080800000000
..........................................................TTTGCTCTAAACTGTCTGCGAAGATA..........................................................................................2633.0090810000000
..........................................................................TGCGAAGATATCAGCCTTTTGCTGACT.........................................................................2732.0060500001000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTACT..............2621.5030300000000
..................................................................................................................................................TAGGCATGACTACTCTTTTAAATCGGC.2721.5030100000200
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTA................2441.5060600000000
.............................................................................................TGCTGACTGGAGTAGCACCAACCGCCT......................................................2731.3340400000000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTAC...............2541.2550500000000
................................GACGTAAGATTAAA-TGGTT..........................................................................................................................1911.0010100000000
....................................................................................................TGGAGTAGCACCAACCGCCTGCTGG.................................................2521.0020200000000
...................................................................................................CTGGAGTAGCACCAACCGCCTGCTGG.................................................2611.0010100000000
...........................................................TTGCTCTAAACTGTCTGCGAAGATA..........................................................................................2531.0030200100000
..................................................................................................................................................TAGGCATGACTACTCTTTTAAATCGGCT2821.0020200000000
.................................................................................................................................TTAATT----GGCGATTTAGGCATGACTACTC.............2821.0020200000000
....................................................TAAATCTTTGCTCTAAACTGTCTGC.................................................................................................2531.0030300000000
.............................................................................................TGCTGACTGGAGTAGCACCAACCGCC.......................................................2631.0030300000000
.................................................................TAAACTGTCTGCGAAGATATCAGCCT...................................................................................2650.8040211000000
............................................................TGCTCTAAACTGTCTGCGAAGATA..........................................................................................2450.8040400000000
.................................................................................................................................TTAATT----GGCGATTTAGGCATGACTAC...............2640.7530300000000
....................................................................................................TGGAGTAGCACCAACCGCCTG.....................................................2140.7530300000000
..................................................................................TATCAGCCTTTTGCTGACTGGAGT....................................................................2430.6720020000000
..............................................................................................GCTGACTGGAGTAGCACCAACCGCC.......................................................2530.6720200000000
...........................................................................................TTTGCTGACTGGAGTAGCACCAAA...........................................................2430.6720200000000
.......TAA-----------------CAGCAGACGTAAGATTAAA-T..............................................................................................................................2330.6720200000000
.................................................................TAAACTGTCTGCGAAGATATCAGCC....................................................................................2550.6030300000000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACT.................2340.5020200000000
...................................................................................................................................AATT----GGCGATTTAGGCATGACTACTC.............2620.5010100000000
.........................................................................................................TAGCACCAACCGCCTGCTGGATA..............................................2320.5010100000000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTACTCG............2820.5010100000000
.........................................................................................................TAGCACCAACCGCCTGCTGGAA...............................................2220.5010100000000
.........................................................................................................TAGCACCAACCGCCTGCTGGATTTT............................................2520.5010100000000
........................................................................................................................................................TGACTACTCTTTTAAATCGG..2020.5010000000010
....................................................................................................................................................GGCATGACTACTCTTTTAAATCGGC.2520.5010100000000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTACTCT............2820.5010100000000
....................................................................................................TGGAGTAGCACCAACCGCCTGCTGGAA...............................................2720.5010010000000
.................................................................TAAACTGTCTGCGAAGATATCAGCCTTT.................................................................................2840.5020200000000
...................................................................................................................................AATT----GGCGATTTAGGCATGACTA................2340.5020200000000
........................................................................................................................................................TGACTACTCTTTTAAATCGGCT2220.5010100000000
..................................................................................................................................................TAGGCATGACTACTCTTTTAAAT.....2320.5010100000000
.................................................................................................................................................TTAGGCATGACTACTCTTTTAAATCGGC.2820.5010100000000
...................................................................................................................................................AGGCATGACTACTCTTTTAAATCGGC.2620.5010000000100
.............................................................GCTCTAAACTGTCTGCGAAGATA..........................................................................................2350.4020200000000
.................................................................TAAACTGTCTGCGAAGATATCAGCCTT..................................................................................2750.4020200000000
.................................................................................................................................TTAATT----GGCGATTTAGGCATGA...................2250.4020200000000
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATGAC..................2550.4020200000000
...................................................................AACTGTCTGCGAAGATATCAGCC....................................................................................2350.4020101000000
....................................................TAAATCTTTGCTCTAAACTGTCTGCGA...............................................................................................2730.3310100000000
....................................................................................TCAGCCTTTTGCTGACTGGAGTAG..................................................................2430.3310100000000
..................................................................................TATCAGCCTTTTGCTGACTGGAA.....................................................................2330.3310100000000
........................................................TCTTTGCTCTAAACTGTCTGCGAAG.............................................................................................2530.3310100000000
.................................................................................................GACTGGAGTAGCACCAACCGCC.......................................................2230.3310100000000
.................................................................................................GACTGGAGTAGCACCAACCGCCTGC....................................................2530.3310100000000
....................................................................................TCAGCCTTTTGCTGACTGGAGTAGCAC...............................................................2730.3310100000000
.....................................................AAATCTTTGCTCTAAACTGTCTGCGA...............................................................................................2630.3310100000000
..........................................................................................TTTTGCTGACTGGAGTAGCACCAACCGC........................................................2830.3310100000000
...........................................................TTGCTCTAAACTGTCTGCGAAGA............................................................................................2330.3310100000000
..........................................................TTTGCTCTAAACTGTCTGCGA...............................................................................................2130.3310000000010
..........................................................TTTGCTCTAAACTGTCTGCGAAGA............................................................................................2430.3310100000000
..................................................................................TATCAGCCTTTTGCTGACTGGAGA....................................................................2430.3310010000000
...........................................................................................TTTGCTGACTGGAGTAGCACCAACCGC........................................................2730.3310100000000
...........................................................................................TTTGCTGACTGGAGTAGCACCAACC..........................................................2530.3310100000000
.............................................................................................TGCTGACTGGAGTAGCACCAACCGT........................................................2530.3310100000000
.............................................................................................TGCTGACTGGAGTAGCACCAAC...........................................................2230.3310100000000
....................................................TAAATCTTTGCTCTAAACTGTC....................................................................................................2230.3310100000000
..........................................................................TGCGAAGATATCAGCCTTTTGCTGAC..........................................................................2630.3310100000000
..TCGTGTAA-----------------CAGCAGACGTAAGA.....................................................................................................................................2230.3310100000000
...................................................TTAAATCTTTGCTCTAAACTGTC....................................................................................................2330.3310100000000
............................................................................................TTGCTGACTGGAGTAGCACCAACC..........................................................2430.3310100000000
........................................................TCTTTGCTCTAAACTGTCTGCGA...............................................................................................2330.3310100000000
...........................................................................................TTTGCTGACTGGAGTAGCACCAACCG.........................................................2630.3310100000000
................................................................................................TGACTGGAGTAGCACCAACCGCCT......................................................2430.3310100000000
........AA-----------------CAGCAGACGTAAGATTAAA-TGG............................................................................................................................2430.3310100000000
..........................................................................................................................TGGATTTTTAATT----GGCGATTTAGG........................2430.3310100000000
....................................................................................................TGGAGTAGCACCAACCGCCTGCTG..................................................2440.2510100000000
.................................................................................................................................TTAATT----GGCGATTTAGGCATGACTA................2540.2510100000000
......................................................................TGTCTGCGAAGATATCAGCCTTT.................................................................................2340.2510100000000
....................................................................................................TGGAGTAGCACCAACCGCCTGCT...................................................2340.2510100000000
.........................................................................CTGCGAAGATATCAGCCTTTTGC..............................................................................2340.2510100000000
..........................................................................TGCGAAGATATCAGCCTTTTG...............................................................................2140.2510100000000
....................................................................................................TGGAGTAGCACCAACCGCCTGCTT..................................................2440.2510100000000
......................................................................TGTCTGCGAAGATATCAGCCTTTTGC..............................................................................2640.2510100000000
...................................................................................................................................AATT----GGCGATTTAGGCATGACTAC...............2440.2510100000000
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATGACTA................2740.2510100000000
........................................................................TCTGCGAAGATATCAGCCTTTTGC..............................................................................2440.2510100000000
...................................................................AACTGTCTGCGAAGATATCAGCCTTT.................................................................................2640.2510100000000
..................................................................AAACTGTCTGCGAAGATATCAGCCTT..................................................................................2650.2010100000000
.................................................................................................................................TTAATT----GGCGATTTAGGCATG....................2150.2010000010000
.............................................................................................................................ATTTTTAATT----GGCGATTTAGG........................2150.2010100000000
...............................................................TCTAAACTGTCTGCGAAGATA..........................................................................................2150.2010100000000
......................................................................TGTCTGCGAAGATATCAGCCTT..................................................................................2250.2010100000000
...................................................................AACTGTCTGCGAAGATATCAGCCT...................................................................................2450.2010100000000
...............................................................TCTAAACTGTCTGCGAAGATATCAGCC....................................................................................2750.2010100000000
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATGA...................2450.2010100000000
.......................................................................GTCTGCGAAGATATCAGCCTT..................................................................................2150.2010100000000
droPer2
CTTCGTGTAA-----------------CAGCAGACGTAAGATTAAA-TGGTTTAAATCATTGCTCTAAACTGTCTGCGAAGATATCAGCCTTTTGCTGACTGGAGTAGCACCAACCGCCTGCTGGATTTTTAATT----GGCGATTTAGGCATGACTACTCTTTTAAATCGGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGGTT..........................................................................................................................2752.60130110101
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGG............................................................................................................................2581.2510082000
.......TAA-----------------CAGCAGACGTAAGATTAAA-TG.............................................................................................................................2480.756042000
.......TAA-----------------CAGCAGACGTAAGATTAAA-TGGT...........................................................................................................................2650.603030000
...........................................................................................TTTGCTGACTGGAGTAGCACCAACCGCCT......................................................2960.503300000
........AA-----------------CAGCAGACGTAAGATTAAA-TGGTT..........................................................................................................................2650.402020000
...................................................................................................CTGGAGTAGCACCAACCGCCT......................................................21130.314400000
........AA-----------------CAGCAGACGTAAGATTAAA-TGG............................................................................................................................2480.252020000
........AA-----------------CAGCAGACGTAAGATTAAA-TGGT...........................................................................................................................2550.201010000
................................................................................................TGACTGGAGTAGCACCAACCGCCTG.....................................................25110.182020000
................................................................................................TGACTGGAGTAGCACCAACCGCCT......................................................24110.182110000
...........................................................................................TTTGCTGACTGGAGTAGCACCAACCGCC.......................................................2860.171010000
.......................................................................................................................TGCTGGATTTTTAATT----GGCGATT............................2370.141010000
....GTGTAA-----------------CAGCAGACGTAAGATTAAA-TGG............................................................................................................................2870.141010000
.TTCGTGTAA-----------------CAGCAGACGTAA.......................................................................................................................................2170.141010000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACTACTC.............2770.141010000
.................................................................................................................................TTAATT----GGCGATTTAGGCATGACTACTC.............2870.141000001
.............................................................................................TGCTGACTGGAGTAGCACC..............................................................1980.131100000
.......TAA-----------------CAGCAGACGTAAGATTA..................................................................................................................................2080.131010000
........AA-----------------CAGCAGACGTAAGATTAAA-TG.............................................................................................................................2380.131010000
.............................................................................................TGCTGACTGGAGTAGCACCAACCGCCT......................................................2780.131010000
.........A-----------------CAGCAGACGTAAGATTAAA-T..............................................................................................................................2180.131010000
.............................................................................................................................................CGATTTAGGCATGACTACTCTTT..........2390.111010000
.............................................................GCTCTAAACTGTCTGCGAAGATA..........................................................................................2390.111010000
..................................................................................................................................................TAGGCATGACTACTCTTTTAAATCGGC.2790.111010000
...................................................................................................................................AATT----GGCGATTTAGGCATGACTAC...............2490.111010000
......................................................................................................................................T----GGCGATTTAGGCATGACTACTCTTTA.........2790.111010000
..................................................................................................................................TAATT----GGCGATTTAGGCATGACT.................2390.111010000
....................................................................................................................................................GGCATGACTACTCTTTTAAATCGGC.2590.111010000
.......................................................................................................................................................ATGACTACTCTTTTAAATCGGCT2390.111010000
...................................................................................................................................................AGGCATGACTACTCTTTTAAATCGGCT2790.111010000
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATGACT.................2690.111010000
............................................................TGCTCTAAACTGTCTGCGAAGATA..........................................................................................2490.111010000
................................................................................................................................................TTTAGGCATGACTACTCTTTTAAAT.....25100.101010000
...............................................................................................................................TTTTAATT----GGCGATTTAGG........................19100.101010000
........................................................................................................................................................TGACTACTCTTTTAAATC....18100.101010000
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATGA...................24100.101010000
............................................................TGCTCTAAACTGTCTGCGAA..............................................................................................20100.101000100
...............................................................................................................................TTTTAATT----GGCGATTTAGGCATG....................23100.101010000
.................................................................................................GACTGGAGTAGCACCAACCGCCTGCTG..................................................27110.091010000
.................................................................................................GACTGGAGTAGCACCAACCGCCT......................................................23110.091010000
.....................................................................................................GGAGTAGCACCAACCGCCTGCTG..................................................23130.081010000
....................................................................................................TGGAGTAGCACCAACCGCCTGCTG..................................................24130.081010000
droAna3
ATTTCTAGTG----------------GCGGCTGAAGAAAACTCAAA-CTTCTGAAATCGATTTTGAAGGTTGTCTGCAAACGCTTCCGCGCGCTCAATTGGTGATCTAGCACAAGAACCATCATCTCTCCTGATA----AGAAATTTTGCGGACACCTGTTTTTTAAATTTACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................TCCGCGCGCTCAATTGGTGATCTAGC................................................................2612.002200000
........................................................................................................TCTAGCACAAGAACCATCATCTCTCCTGA.........................................2912.002110000
........TG----------------GCGGCTGAAGAAAACTCAAA-CTTC...........................................................................................................................2611.001010000
......................................................................................CGCGCGCTCAATTGGTGATCTAGCACAAG...........................................................2911.001100000
.....................................................................................CCGCGCGCTCAATTGGTGATCTAGC................................................................2511.001100000
..................................................................................................................................TGATA----AGAAATTTTGCGGACACCTGTT.............2711.001100000
.....TAGTG----------------GCGGCTGAAGAAAACTCAAA-CTT............................................................................................................................2811.001100000
..................................................................................................................................TGATA----AGAAATTTTGCGGACACCTG...............2511.001100000
...................................................................................................................................................TGCGGACACCTGTTTTTTAAATT....2311.001100000
.............................................................................................................................TCTCCTGATA----AGAAATTTTGCGGACACC.................2811.001010000
......................................................................................................GATCTAGCACAAGAACCATCATCTCTCC............................................2811.001100000
..........................................................................................CGCTCAATTGGTGATCTAGCAC..............................................................2211.001010000
....................................................................................TCCGCGCGCTCAATTGGTGATCTA..................................................................2411.001100000
..........................................................................................................TAGCACAAGAACCATCATCTCTCCTG..........................................2611.001100000
...............................................................................................................................TCCTGATA----AGAAATTTTGCGGACACCT................2711.001100000
....................................................................................TCCGCGCGCTCAATTGGTGATCTAG.................................................................2511.001100000
...............................................................................................................CAAGAACCATCATCTCTCCTGATA----AG.................................2620.501100000
...TCTAGTG----------------GCGGCTGAAGAAAACTCAAA-C..............................................................................................................................2820.501100000
........................................................TCGATTTTGAAGGTTGTCTGCAAACGC...........................................................................................2720.501010000
...............................................................................................................CAAGAACCATCATCTCTCCTGATA----AGA................................2720.501100000
........TG----------------GCGGCTGAAGAAAACTCAAA-CT.............................................................................................................................2420.501100000
................................................................................................................AAGAACCATCATCTCTCCTGATA----AG.................................2520.501100000
...............................................................TGAAGGTTGTCTGCAAACGCTTCCGC.....................................................................................2630.331001000
........................................................TCGATTTTGAAGGTTGTCTGCAAA..............................................................................................2430.331100000
........................................................TCGATTTTGAAGGTTGTCTGCAAAC.............................................................................................2530.331010000
......................................................................TGTCTGCAAACGCTTCCGCGCGCTC...............................................................................2530.331100000
.....................................................................TTGTCTGCAAACGCTTCCGCGCGC.................................................................................2430.331100000
........................................................TCGATTTTGAAGGTTGTCTGCAAACG............................................................................................2630.331100000
................................................................GAAGGTTGTCTGCAAACGCTTCCGA.....................................................................................2540.251100000
droBip1
CTCCGGTGAG-----------------CA--------GCGATCGAA-AGGCGTAAAACCACCTTCGAGGTGTTCGGCGAAAGCGTTAGCCCTATCTATCTCCGATCTGCACCAGCTGCCGTCGGTACTTTGTACAGGTGGGATCCTTTTCA-GTGGCTGTCTGATAAAT---TTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTGAAGACACAAATTATCAG------------GGGCATAATCAAA-GGGCTTAAAACGCTGCTCAAGGTTATCAGCAAACACTTCAGCTTTTTCTAAGCTAGTGCGACACCAGCCCCCAGCCTGATTTCTGATT----GCTGACTTTGGGGAGGACTGCGTTTTGAATCGTTTSizeHit CountTotal NormTotal
No Reads
droFic1
CTTCGA---------------GATCCTCTGGGCTCGCGAGGTCGAA-TGGCTGAAAGCGTTTCTCTAGTTCGTCCGCGAAAGCTAAAGAAATCTCTGAGTCAGACCTGCACCATGTATCATCAGTTTTCTTTATG----GGAATCTTTCGGAGAGGCTGTCGTTTAATGTTTCGSizeHit CountTotal NormTotal
No Reads
droEle1
CTTTCC--------------GGT------------GCATAATCGTA-AGGCCGAAAACGCTGCTCAAGGTTTTTAGCGAACACATCAGCTTTCTCCTGGCAATTGCGACACCAGCCACCTTTAATATTTCTTATA----GCTGATTTTGGGGTGGGCTGAGCTTTATACTTTTTSizeHit CountTotal NormTotal
No Reads
droRho1
CTTTCA---------------GG------------TGAATAGTCGTAAGGCTT-GAACGTTGCTCGAGGTTGTTAGCGAACGCTTCAGCTTTCTCTAGGCTCGTACGGCACCAGCCACCTGAGGGGTTTTTAATT----GCTGACTTTGGGGTGGGCTGAGCCTTGTACCGTTTSizeHit CountTotal NormTotal
No Reads
droBia1
CCTCGCGG------------------------CTGGCTAGGTCATA-TGGCTGGAAGCGTCTCTCGAGTTCGTCCGCAAAAGCAGAAGAAATTTCCGTGTCGGACCTGCACCATGTATCGTCAGATTTTTTAATG----GGGATCTTTCGAAGTGGCTGTCGTTTTATATTCCGSizeHit CountTotal NormTotal
No Reads
droTak1
CTTCATCT------------G------------TGACCAAATCAAA-AGGCTTAAATCTTTCTTCCAAAGAATCAGCGAACTCCTTAGCTATTTCATCATCTTTATTTGCCCAGGTACCGTCCGATCGAAGCAAG----GGAAACTTCTGGAGAGGCTGTCTTTTAAGCCCGCGSizeHit CountTotal NormTotal
No Reads
droEug1
CTCCGA---------------G----------CTCGCAAGGTTAAA-TGGCTCAAAGCGTTGCTCTAGTTCTTCGGCAAAAGCTAATGAGATCTCTGAGTCTGATTTGCACCATGTACCGTCTGTTTTCTTAATG----GGAATTTTCCTAAGAGGCTGCCTTTTTAATTTCCTSizeHit CountTotal NormTotal
No Reads
dm3
CTGCC---------------GGA------------GTAAGATTCAA-TGGCTTTAATCTATCCTCTAAGCTGCTTGCAAAGATATCGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATA----GGAGCCTTTGGAATAACTTGTCTTTTAAGGTTATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................CACCAGCCGGATTTCTGATA----GGAGCCT............................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TA----GGAGCCTTTGGAATAACTTGTC.............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAAGCTGCTTGCAAAGATATCGG......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................CTTTAATCTATCCTCTAAGCT.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTCTGATA----GGAGCCTTTGGAATAAC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTAATCTATCCTCTAAGCTGCTTG..................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCAC........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GGATTTCTGATA----GGAGCCTTTGGAA......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AACCACCAGCCGGATTTCTGATA----GGA................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTCTGATA----GGAGCCTTTGGAATAACT.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ATCCTCTAAGCTGCTTGCAAAGATA..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AGCCGGATTTCTGATA----GGAGC..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTTAATCTATCCTCTAAGCTGCTTGCA................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGAGCCGCACCAACCACC.......................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGCC---------------GGA------------GTAAGATTCAA-TGGCTTAAATCTATCCTCTAAGCTGCTTGCAAAGATATCAGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATG----GGAGCATTTGGAATAACTTGTCTTTTAAGGTTATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTGA.........................................271037.903790000002125188216010000
......................................................AATCTATCCTCTAAGCTGCTTGCAAAGA............................................................................................281413.7119200000011434440000000
......................................................AATCTATCCTCTAAGCTGCTTGCAA...............................................................................................25145.86820000001432360000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGA.........................................24115.73630000002317995000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACC.......................................................26114.3648000000122100375000
.............................................................................................TCCTGACTGGAGCCGCACCAACCAC........................................................25114.09450000000300003012000
........................................................................................................................................................TAACTTGTCTTTTAAGGTTAT.21133.2342000042000000000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGA................................................2682.752200000081740020000
.............................................................................AAAGATATCAGCCTTCTCCTGACT.........................................................................2432.33700040000003000000
.............................................................................AAAGATATCAGCCTTCTCCTGACTGGAGC....................................................................2932.33700020030200000000
....................................TAAGATTCAA-TGGCTTAAATCTATCCTT.............................................................................................................28102.3023000000601520000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGAT...............................................2772.001400000033610001000
......................................................AATCTATCCTCTAAGCTGCTTGCAAA..............................................................................................26141.86260000000131120000000
..................................................................................TATCAGCCTTCTCCTGACTGGAGCCGC.................................................................2731.33400000002011000000
...........................................................ATCCTCTAAGCTGCTTGC.................................................................................................18141.2918000001800000000000
......................................................AATCTATCCTCTAAGCTGCTTGCAAAG.............................................................................................27141.2918000000015030000000
....................................TAAGATTCAA-TGGCTTAAATCTATCCTC.............................................................................................................2891.221100360000101000000
....................................TAAGATTCAA-TGGCTTAAATCTATCCT..............................................................................................................2791.111000000040510000000
........................................ATTCAA-TGGCTTAAATCTATCCTC.............................................................................................................24111.0912000012000000000000
....................................TAAGATTCAA-TGGCTTAA.......................................................................................................................18101.0010000010000000000000
..............................................................................................................................TTTCTGATG----GGAGCATTTG.........................1911.00100000000001000000
............................................................................................................................GATTTCTGATG----GGAGCATTTGGAA......................2411.00100000000001000000
.....................................................................................................................................TG----GGAGCATTTGGAATAACTTGTCTTT..........2711.00100000000001000000
.....................................................................................................................................TG----GGAGCATTTGGAAT.....................1611.00100000000001000000
.............................................................................AAAGATATCAGCCTTCTCCTGACTG........................................................................2531.00300010010000010000
.....................................................................................................................................TG----GGAGCATTTGGAATAACTTGTCT............2511.00100000000000100000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGAGCA.............................2611.00100000001000000000
.............................................................................AAAGATATCAGCCTTCTCCTGACTGG.......................................................................2631.00300020000001000000
......................................................AATCTATCCTCTAAGCTGCTTGCA................................................................................................24140.931300000003280000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGAT........................................2590.89800000042200000000
........................................................................................................................................................TAACTTGTCTTTTAAGGT....18140.8612000000000012000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCA.........................................................24120.75900000000000090000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGT....25100.70700000000601000000
....................................TAAGATTCAA-TGGCT..........................................................................................................................15100.70700000000106000000
.............................................................................AAAGATATCAGCCTTCTCCTGACTGGA......................................................................2730.67200000010100000000
..................................................................................TATCAGCCTTCTCCTGACTGGAGC....................................................................2430.67200000001100000000
........................................................................................................................................................TAACTTGTCTTTTAAG......16140.64900000000018000000
...........................................................................................................GCACCAACCACCAGCCGGATTTCTGA.........................................26110.64700000031210000000
..................................................................................................................................................TTGGAATAACTTGTCTTTTAAGGTTA..26100.60600010011210000000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGAGC..............................25100.60600100013010000000
....C---------------GGA------------GTAAGATTCAA-TGGCTTAAATC....................................................................................................................26100.60600000010021020000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACC..........................................................26120.58700020013001000000
........................................................TCTATCCTCTAAGCTGCTTGCAAAGA............................................................................................26140.57800000031400000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGATG----GGA................................2990.56500000013010000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGAA...............................................2780.50400000001120000000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGTTA..27100.50500000001130000000
...................................................................................................................................................TGGAATAACTTGTCTTTTAAGGTTA..25100.50500000001220000000
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTG..........................................26100.50500000012200000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACCAC........................................................28110.45500010000100030000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACCA......................................................27110.45500000010000031000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGATT..............................................2870.43300000000110010000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGTT...26100.40400000000301000000
................................................................................................TGACTGGAGCCGCACCAACCACCAGC....................................................26100.40400000010200010000
....................................TAAGATTCAA-TGGCTTAAATCTAT.................................................................................................................24100.40400000010200010000
....................................TAAGATTCAA-TGGCTTA........................................................................................................................17100.40400000000004000000
............................................................................CAAAGATATCAGCCTTCTCCTGACT.........................................................................2530.33100100000000000000
.............................................................................AAAGATATCAGCCTTCTCCTGACTGGAGCT...................................................................3030.33100000010000000000
.............................................................................AAAGATATCAGCCTTCTCCTGA...........................................................................2230.33100000000001000000
..............................................................................AAGATATCAGCCTTCTCCTGACTGGAGC....................................................................2830.33100000001000000000
............................................................................................CTCCTGACTGGAGCCGCACCAACCA.........................................................25120.33400000000000040000
..........................................................................TGCAAAGATATCAGCCTTCTCCTGA...........................................................................2530.33100000000010000000
............................................................................CAAAGATATCAGCCTTCTCCTGAC..........................................................................2430.33100010000000000000
.............................................................................AAAGATATCAGCCTTCTCCTGAC..........................................................................2330.33100000000001000000
......................................................................................AGCCTTCTCCTGACTGGAGCC...................................................................2130.33100000000001000000
......................................................................................AGCCTTCTCCTGACTGGAGCCGC.................................................................2330.33100000000001000000
....................................TAAGATTCAA-TGGCTTAAATCTATCC...............................................................................................................26100.30300010010000010000
....................................TAAGATTCAA-TGGCTTAAATCTATC................................................................................................................25100.30300000010101000000
....................................TAAGATTCAA-TGGCTTAAA......................................................................................................................19100.30300010000002000000
........................................................................................................................................................TAACTTGTCTTTTAAGG.....17140.29400000000022000000
...................................................TTAAATCTATCCTCTAAGCTGCTTGC.................................................................................................26140.29400010010002000000
...................................................TTAAATCTATCCTCTAAGCTGCTTGCAA...............................................................................................28140.29400000001120000000
.............................................................................................TCCTGACTGGAGCCGCACCAACC..........................................................23120.25300000000000030000
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTGAT........................................2880.25200000010010000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAAC...........................................................25120.25300010000101000000
.............................................................................................TCCTGACTGGAGCCGCACCAACA..........................................................23120.25300000000000021000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGATG----GG.................................2890.22200010000010000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGATG----...................................2690.22210000010000000000
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTGAA........................................2890.22200000010010000000
....................................................TAAATCTATCCTCTAAGCTGCTTGC.................................................................................................25140.21300010000002000000
........................................................................................................................................................TAACTTGTCTTTTAAGGTT...19140.21300000000003000000
..................................................................................................................CCACCAGCCGGATTTCTGATG----GGAGC..............................26100.20200000020000000000
................................................................................................................AACCACCAGCCGGATTTCTGATG----GGAGC..............................28100.20200000001100000000
....................................................................................................................ACCAGCCGGATTTCTGATG----GGAGC..............................24100.20200000010100000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACCAGC....................................................29100.20200000001000010000
.................................................................TAAGCTGCTTGCAAAGATATC........................................................................................21160.19300000000002010000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACCAG.....................................................28110.18200000010010000000
................................................................................................TGACTGGAGCCGCACCAACCAC........................................................22110.18200000000010010000
................................................................................................TGACTGGAGCCGCACCAACCACCA......................................................24110.18200000000000020000
.............................................................................................TCCTGACTGGAGCCGCACCAAC...........................................................22120.17200000000000020000
.............................................................................................TCCTGACTGGAGCCGCACCAACCAT........................................................25120.17200000000000020000
................................................................................................................AACCACCAGCCGGATTTCTGA.........................................21130.15200000000002000000
........................................................TCTATCCTCTAAGCTGCTTGC.................................................................................................21140.14200000010001000000
...................................................TTAAATCTATCCTCTAAGCTGCTTGCAAA..............................................................................................29140.14200000000020000000
.TGCC---------------GGA------------GTAAGATTCAA-TGGCT..........................................................................................................................2370.14100000000001000000
.TGCC---------------GGA------------GTAAGATTCAA-TGGC...........................................................................................................................2270.14100000000000001000
....................................................TAAATCTATCCTCTAAGCTGCT....................................................................................................22140.14200000000002000000
....................................................TAAATCTATCCTCTAAGCTGCTTGCAAAGA............................................................................................30140.14200000001100000000
.TGCC---------------GGA------------GTAAGATTCAA-TGG............................................................................................................................2170.14100000000001000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGATTT.............................................2970.14100000000100000000
......................................................AATCTATCCTCTAAGCTGCTTGC.................................................................................................23140.14200000001010000000
.........................................TTCAA-TGGCTTAAATCTATCCTCTAAGC........................................................................................................28150.13200010010000000000
................................................................................................TGACTGGAGCCGCACCAACCACCAGCC...................................................2780.13100000010000000000
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTGATG----...................................2980.13100000010000000000
...................................................................................................CTGGAGCCGCACCAACCACCAGCCGGA................................................2780.13100000001000000000
...................................................TTAAATCTATCCTCTAAGCT.......................................................................................................20160.13200000010001000000
..............................................................................................................CCAACCACCAGCCGGATTTCTGATG----GGC................................2890.11100000010000000000
..............................................................................................................CCAACCACCAGCCGGATTTCTGATG----G..................................2690.11100000000010000000
....................................TAAGATTCAA-TGGCTTAAATCTATCCTCT............................................................................................................2990.11100010000000000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGATG----GGAGC..............................3190.11100000010000000000
................................................................................................................AACCACCAGCCGGATTTCTGATG----GGAG...............................27100.10100000000000010000
...............................................................................................CTGACTGGAGCCGCACCAACCACCAGC....................................................27100.10100000010000000000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGAG...............................24100.10100000000000010000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----GGAGC..............................29100.10100000010000000000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----GGC................................27100.10100000010000000000
..................................................................................................................CCACCAGCCGGATTTCTGATG----GGAA...............................25100.10100000000000010000
....................................TAAGATTCAA-TGGCTTAAAT.....................................................................................................................20100.10100000000001000000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----GG.................................26100.10100000010000000000
.....................GA------------GTAAGATTCAA-TGGCT..........................................................................................................................18100.10100000000001000000
....................................TAAGATTCAA-TGGCTT.........................................................................................................................16100.10100000000001000000
..................................................................................................................................................TTGGAATAACTTGTCTTTTAAGGTTAT.27100.10100010000000000000
....................................................................................................................ACCAGCCGGATTTCTGATG----GGA................................22100.10100000001000000000
....C---------------GGA------------GTAAGATTCAA-TGGCTTAAATCT...................................................................................................................27100.10100000000000010000
....................................TAAGATTCAA-TGGCTTAAATCTA..................................................................................................................23100.10100000000000010000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----GGAG...............................28100.10100000001000000000
....................................TAAGATTCAA-TGGCTTAAATC....................................................................................................................21100.10100000000001000000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGA................................23100.10100000001000000000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----...................................24110.09100000001000000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACA.......................................................26110.09100000000000010000
...........................................................................................TCTCCTGACTGGAGCCGCACCAACCAC........................................................27110.09100010000000000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACT.......................................................26110.09100000000000010000
................................................................................................TGACTGGAGCCGCACCAACCACCAG.....................................................25110.09100000000000010000
............................................................................................................CACCAACCACCAGCCGGATTTCTGA.........................................25110.09100000001000000000
.......................................GATTCAA-TGGCTTAAATCTATCCTC.............................................................................................................25110.09100000000001000000
..............................................................................................................CCAACCACCAGCCGGATTTCTGA.........................................23110.09100000010000000000
.......................................................................................................................AGCCGGATTTCTGATG----GGAGC..............................21110.09100000000001000000
............................................................................................CTCCTGACTGGAGCCGCACCAACCACC.......................................................27110.09100000000000010000
..........................................................................................................CGCACCAACCACCAGCCGGATT..............................................22110.09100000000100000000
................................................................................................................AACCACCAGCCGGATTTCTGATG----...................................23110.09100000000100000000
..............................................................................................................CCAACCACCAGCCGGATTTCTGATG----GAGC...............................29110.09100000000100000000
..................................................................................................................................................TTGGAATAACTTGTCTTT..........18120.08100000000001000000
..........................................................................................TTCTCCTGACTGGAGCCGCACTCC............................................................24120.08100000001000000000
.......................................................................................................................AGCCGGATTTCTGATG----...................................16120.08100000000001000000
................................................................................................................AACCACCAGCCGGATTTCTGAAA----A..................................24120.08100000000010000000
.......................................GATTCAA-TGGCTTAAA......................................................................................................................16120.08100000000001000000
..................................................................................................................................................TTGGAATAACTTGTC.............15120.08100000000001000000
................................................................................................TGACTGGAGCCGCACCAATA..........................................................20120.08100000000000010000
.............................................................................................TCCTGACTGGAGCCGCACCAA............................................................21120.08100000000000010000
...................................................................................................CTGGAGCCGCACCAAC...........................................................16130.08100000000001000000
..............................................................................................................CCAACCACCAGCCGGA................................................16130.08100000000010000000
..................................................................................................................CCACCAGCCGGATTTCTGA.........................................19130.08100000010000000000
....................................................................................................................ACCAGCCGGATTTCTGA.........................................17130.08100000000001000000
...............................................................................................................CAACCACCAGCCGGATTTCTGA.........................................22130.08100000001000000000
................................................................................................................AACCACCAGCCGGATTTCTG..........................................20130.08100000000001000000
............................................................TCCTCTAAGCTGCTTGCAAAGATATC........................................................................................26130.08100010000000000000
........................................................................................................................................................TAACTTGTCTTTTAAGGTTA..20130.08100000000001000000
......................................................AATCTATCCTCTAAGCTGCTTGCAT...............................................................................................25140.07100000000010000000
....................................................TAAATCTATCCTCTAAGCTGCTTG..................................................................................................24140.07100000010000000000
...................................................TTAAATCTATCCTCTAAGCTGCT....................................................................................................23140.07100000000001000000
......................................................AATCTATCCTCTAAGCTGCTTGCAATA.............................................................................................27140.07100000001000000000
........................................................TCTATCCTCTAAGCTGCT....................................................................................................18140.07100000000001000000
......................................................................................................................CAGCCGGATTTCTGA.........................................15140.07100000000100000000
......................................................AATCTATCCTCTAAGCTGCTTG..................................................................................................22140.07100000001000000000
..........................................................TATCCTCTAAGCTGCT....................................................................................................16140.07100000000001000000
..........................................................................................................................................................ACTTGTCTTTTAAGGTTA..18140.07100000000001000000
...................................................TTAAATCTATCCTCTAAGCTGCTTGCAAAGA............................................................................................31140.07100000000100000000
....................................................TAAATCTATCCTCTAAGCTGC.....................................................................................................21140.07100000000000100000
....................................................TAAATCTATCCTCTAAGCTGCTTGCA................................................................................................26140.07100000000010000000
............................................................TCCTCTAAGCTGCTTGCA................................................................................................18140.07100000000001000000
............................................................TCCTCTAAGCTGCTTGC.................................................................................................17140.07100000000001000000
..............................................................................................................CCAACCACCAGCCGG.................................................15140.07100000010000000000
......................................................AATCTATCCTCTAAGCTGCTTGCAAAGT............................................................................................28140.07100000001000000000
............................................................TCCTCTAAGCTGCTTGCAAAGATA..........................................................................................24140.07100000000000010000
........................................................TCTATCCTCTAAGCTGCTTGCAAAGATA..........................................................................................28140.07100000000000001000
....................................................TAAATCTATCCTCTAAGCTGCTT...................................................................................................23140.07100000000001000000
...................................................TTAAATCTATCCTCTAAGCTGCTT...................................................................................................24140.07100000010000000000
....................................................TAAATCTATCCTCTAAGCTGCTTGCAA...............................................................................................27140.07100000000010000000
...................................................TTAAATCTATCCTCTAAGCTGC.....................................................................................................22140.07100000000100000000
.........................................TTCAA-TGGCTTAAATCTATCCTCTAAG.........................................................................................................27150.07100000000100000000
........................................................................................................................................................TAACTTGTCTTTTAA.......15150.07100000000001000000
................................................................................................................AACCACCAGCCGGATTTC............................................18150.07100000000001000000
.............................................................................................................................................................TGTCTTTTAAGGTTATT17150.07100000000001000000
..........................................TCAA-TGGCTTAAATCTATCCTCTAAGC........................................................................................................27150.07100000001000000000
...................................................TTAAATCTATCCTCTAAGCTG......................................................................................................21160.06100010000000000000
..........................................TCAA-TGGCTTAAATCTATCCTC.............................................................................................................22160.06100000000001000000
.........................................TTCAA-TGGCTTAAATCTATCCTCT............................................................................................................24160.06100000000100000000
....................................................TAAATCTATCCTCTAAGCAT......................................................................................................20160.06100000000001000000
..................................................................AAGCTGCTTGCAAAGATATC........................................................................................20170.06100000000001000000
.................................................................TAAGCTGCTTGCAAAGAT...........................................................................................18170.06100000000001000000
.................................................................TAAGCTGCTTGCAAAG.............................................................................................16170.06100000000001000000
..........................................TCAA-TGGCTTAAATC....................................................................................................................15190.05100000000001000000
..........................................................................................TTCTCCTGACTGGAGCCGC.................................................................19200.05100000000001000000
........................................................................................................................................................TAACTTGTCTTTTAAGCC....18200.05100000000001000000
.........................................................................................CTTCTCCTGACTGGAGC....................................................................17200.05100000000001000000
droSec2
CTGCC---------------GGA------------GTAAGATTCAG-TGGCTTAAATCTGTCCTCTAAGCTGCTTGCAAAGATATCAGCCTTCTCCTGACTGGAGCCACACCAGTCACCAGCCGGATTTCTGATG----GGAGCCTTTGGAATTACTTGTCTTTTAAGGTTATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................AGCCGGATTTCTGATG----GGAGCCT............................23200.0510001
.......................................................................................................................AGCCGGATTTCTGATG----GGAGCCTT...........................24200.0511000
................................................................................................................................TCTGATG----GGAGCCTTTGGA.......................19200.0510001
..............................................................................................................................TTTCTGATG----GGAGCCTTTGGA.......................21200.0510010
droYak3
CTGCC---------------GGA------------GTAAGATTCAA-TGGCTTAAATCTATCCTCTAAACTGCTTGCAAAGATATCGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCCGGATTTCTGATG----GGAGCCTTTGGAATAACTTGTCTTTTAAGGTTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................AAACTGCTTGCAAAGATATCGGCCT...................................................................................25633.3320012517400000000
...............................................................TCTAAACTGCTTGCAAAGATATCGGCC....................................................................................27618.831135268200000000
..........................................................................TGCAAAGATATCGGCCTTCTCCTGAC..........................................................................26718.4312905952000000018
..........................................................................TGCAAAGATATCGGCCTTCTCCTGACT.........................................................................2779.57670213800010007
..................................................................AAACTGCTTGCAAAGATATCGGCCC...................................................................................2568.1749014800000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTTC.................................................................................2766.83410271220000000
..................................................................AAACTGCTTGCAAAGATATCGGCC....................................................................................2465.0030072300000000
.................................................................TAAACTGCTTGCAAAGATATCGGCCT...................................................................................2665.0030142500000000
....................................................................................TCGGCCTTCTCCTGACTGGAGCCGCACC..............................................................2874.5732023000000000
................................................................CTAAACTGCTTGCAAAGATATCGGCC....................................................................................2664.33260111500000000
.................................................................TAAACTGCTTGCAAAGATATCGGCC....................................................................................2564.3326152000000000
...........................................................................................TCTCCTGACTGGAGCCGCACCAACCACC.......................................................2864.3326081800000000
..........................................................................TGCAAAGATATCGGCCTTCTCCTGA...........................................................................2573.1422014710000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACC.......................................................2663.0018012600000000
....................................................TAAATCTATCCTCTAAACTGCTTGCA................................................................................................2662.8317017000000000
..................................................................................TATCGGCCTTCTCCTGACTGGAGC....................................................................2472.5718071010000000
..............................................................................................................................TTTCTGATG----GGAGCCTTTGGAATAACT.................2742.501003700000000
...............................................................................................................................TTCTGATG----GGAGCCTTTGGAATAACT.................2642.25905400000000
......................................................................TGCTTGCAAAGATATCGGCCTTCTCC..............................................................................2662.171306700000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACC..........................................................2662.1713011200000000
..........................................................................TGCAAAGATATCGGCCTTCTCCTGACC.........................................................................2772.1415001500000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACCACC.......................................................2962.001203900000000
...............................................................TCTAAACTGCTTGCAAAGATATCGGC.....................................................................................2662.001204710000000
...............................................................TCTAAACTGCTTGCAAAGATATCGGCCT...................................................................................2862.001203900000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTT..................................................................................2662.001205700000000
..................................................................................................................................TGATG----GGAGCCTTTGGAATAACTTGTC.............2742.00802510000000
..................................................................................TATCGGCCTTCTCCTGACTGGAGCCGC.................................................................2771.8613010000000012
...............................................................................................................................TTCTGATG----GGAGCCTTTGGAATAACTTG...............2841.75707000000000
..................................................................................TATCGGCCTTCTCCTGACTGGAGCC...................................................................2571.7112011100000000
...........................................................................................TCTCCTGACTGGAGCCGCACCAACCAC........................................................2761.6710010000000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAAC...........................................................2571.571106500000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGATT..............................................2861.50900000000009
....................................TAAGATTCAA-TGGCTTAAATCTATCC...............................................................................................................2661.50906300000000
.................................................................TAAACTGCTTGCAAAGATATCGGCCC...................................................................................2661.50900900000000
..........................................................................TGCAAAGATATCGGCCTTCTCCTG............................................................................2471.431008200000000
...........................................................................................TCTCCTGACTGGAGCCGCACCAACC..........................................................2561.33800800000000
................................................................................................................................TCTGATG----GGAGCCTTTGGAATAACT.................2541.25503200000000
..........................................TCAA-TGGCTTAAATCTATCCTCTAAAC........................................................................................................2761.17704300000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGAT...............................................2761.17702000000005
...........................................................................................TCTCCTGACTGGAGCCGCACCAACCA.........................................................2661.17707000000000
.................................................................TAAACTGCTTGCAAAGATATCGGC.....................................................................................2461.00602310000000
..........................................................TATCCTCTAAACTGCTTGCAAAGATA..........................................................................................2661.00602000000004
...............................................TGGCTTAAATCTATCCTCTAAACTGC.....................................................................................................2661.00602400000000
................................................................CTAAACTGCTTGCAAAGATATCGGCCT...................................................................................2761.00610500000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACCAC........................................................2861.00604200000000
..........................................................................TGCAAAGATATCGGCCTTCTCC..............................................................................2270.86601500000000
....................................TAAGATTCAA-TGGCTTAAATCTATCCT..............................................................................................................2760.83501400000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCAC........................................................2560.83504100000000
..................................................................................................................................TGATG----GGAGCCTTTGGAATAACTTG...............2540.75302100000000
.....................................................................................................................................TG----GGAGCCTTTGGAATAACTTGTCTTT..........2740.75301020000000
...........................................................................................TCTCCTGACTGGAGCCGCACCAAC...........................................................2470.71501220000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGGA................................................2660.67402000000002
............................................................................................CTCCTGACTGGAGCCGCACCAACCAC........................................................2660.67404000000000
..................................................................AAACTGCTTGCAAAGATATCGGC.....................................................................................2360.67400310000000
...................................................................AACTGCTTGCAAAGATATCGGCCT...................................................................................2460.67404000000000
................................................................................................TGACTGGAGCCGCACCAACCACCAGCC...................................................2760.67402200000000
..................................................................................TATCGGCCTTCTCCTGACTGGAGCCG..................................................................2670.57404000000000
..............................................................................AAGATATCGGCCTTCTCCTGACTGGAGC....................................................................2870.57403100000000
................................................................................................TGACTGGAGCCGCACCAACCACCAGC....................................................2660.50300200000001
...................................................................................................................................GATG----GGAGCCTTTGGAATAACTTGTC.............2640.50201100000000
......................................................................................................GAGCCGCACCAACCACCAGCCGGATT..............................................2660.50300000000003
.....................................................................................................................................TG----GGAGCCTTTGGAATAACTTGTCT............2540.50201100000000
.....................................................................................................................................TG----GGAGCCTTTGGAATAACTTGTC.............2440.50201010000000
....................................................TAAATCTATCCTCTAAACTGCTTG..................................................................................................2460.50303000000000
..............................................................CTCTAAACTGCTTGCAAAGATATCGGCC....................................................................................2860.50302100000000
..............................................................................................................................TTTCTGATG----GGAGCCTTTGGAATAACC.................2740.50200200000000
..............................................................................................................................TTTCTGATG----GGAGCCTTTGGAATAAC..................2640.50201100000000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGC....2540.50200200000000
......................................................................TGCTTGCAAAGATATCGGCCTTCTCCT.............................................................................2760.50303000000000
.................................................................TAAACTGCTTGCAAAGATATCGGCCTT..................................................................................2760.50303000000000
..........................................................................................TTCTCCTGACTGGAGCCGCACCAACCA.........................................................2760.50300210000000
...........................................................................GCAAAGATATCGGCCTTCTCCTGACT.........................................................................2670.43302100000000
................................................................................GATATCGGCCTTCTCCTGACTGGAGC....................................................................2670.43300300000000
...................................................................................ATCGGCCTTCTCCTGACTGGAGC....................................................................2370.43303000000000
.....................GA------------GTAAGATTCAA-TGGCT..........................................................................................................................1860.33220000000000
.......................................................................................................................AGCCGGATTTCTGATG----GGAGCCTT...........................2460.33201100000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTTCT................................................................................2860.33200200000000
...................................GTAAGATTCAA-TGGCTTAAATCTATCC...............................................................................................................2760.33202000000000
........................................................TCTATCCTCTAAACTGCTTGCAAAGATA..........................................................................................2860.33202000000000
............................................................................................CTCCTGACTGGAGCCGCACCAACCACC.......................................................2760.33200200000000
.......................................................................................................................AGCCGGATTTCTGATG----GGAGCCC............................2360.33200200000000
..........................................................................................................CGCACCAACCACCAGCCGGATTTCTGA.........................................2760.33201100000000
..............................................................................................CCTGACTGGAGCCGCACCAACCACC.......................................................2560.33202000000000
................................................................CTAAACTGCTTGCAAAGATATCGGCCC...................................................................................2760.33200200000000
.........................................TTCAA-TGGCTTAAATCTATCCTCTAAAC........................................................................................................2860.33200200000000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGAGC..............................2560.33201100000000
......................................................................................................................CAGCCGGATTTCTGATG----GGAGCCC............................2460.33200200000000
......................................................................TGCTTGCAAAGATATCGGCCTTCTC...............................................................................2560.33202000000000
.......................................................................GCTTGCAAAGATATCGGCCTTCTCC..............................................................................2560.33201100000000
...................................................................................................................CACCAGCCGGATTTCTGATG----GGAGCC.............................2660.33200200000000
.................................................................TAAACTGCTTGCAAAGATATCGGCCTTC.................................................................................2860.33202000000000
...............................................TGGCTTAAATCTATCCTCTAAACTGCT....................................................................................................2760.33201100000000
...........................................................................GCAAAGATATCGGCCTTCTCCTG............................................................................2370.29202000000000
.........................................................................TTGCAAAGATATCGGCCTTCTCC..............................................................................2370.29201100000000
....................................................................................TCGGCCTTCTCCTGACTGGAGCCGCAC...............................................................2770.29202000000000
....................................................................................TCGGCCTTCTCCTGACTGGAGCCGC.................................................................2570.29201100000000
..........................................................................................TTCTCCTGACTGGAGCCGCACC..............................................................2270.29201100000000
..........................................................................TGCAAAGATATCGGCCTTCTCCTGACTG........................................................................2870.29202000000000
.........................................................................TTGCAAAGATATCGGCCTTCTCCTGAC..........................................................................2770.29200200000000
...........................................................................GCAAAGATATCGGCCTTCTCCTGAC..........................................................................2570.29202000000000
...................................................................................ATCGGCCTTCTCCTGACTGGAGCCGC.................................................................2670.29201100000000
....................................................................................TCGGCCTTCTCCTGACTGGAGCC...................................................................2370.29200200000000
.............................................................................AAAGATATCGGCCTTCTCCTGACT.........................................................................2470.29210100000000
..........................................................................TGCAAAGATATCGGCCTTCTCCT.............................................................................2370.29202000000000
........................................................................................................................GCCGGATTTCTGATG----GGAGCCTTTG.........................2540.25101000000000
...............................................................................................................................TTCTGATG----GGAGCCTTTGGAATAAC..................2540.25100100000000
................................................................................................................................................CTTTGGAATAACTTGTCTTTTAAGGTTA..2840.25101000000000
................................................................................................................................TCTGATG----GGAGCCTTTGGAATAAC..................2440.25100100000000
..............................................................................................................................TTTCTGATG----GGAGCCTTTGGAATG....................2440.25100100000000
.................................................................................................................................CTGATG----GGAGCCTTTGGAATAACT.................2440.25101000000000
...................................................................................................................................................TGGAATAACTTGTCTTTTAAGGTTATT2740.25101000000000
...............................................................................................................................TTCTGATG----GGAGCCTTTGGAATAACTT................2740.25101000000000
.................................................................................................................................CTGATG----GGAGCCTTTGGAA......................1940.25101000000000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGT....2540.25101000000000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGGTTA..2740.25101000000000
............................................................................................................................GATTTCTGATG----GGAGCCTTTGGAAT.....................2540.25101000000000
...................................................................................................................................................TGGAATAACTTGTCTTTTAAGGTTAT.2640.25101000000000
..............................................................................................................................................GCCTTTGGAATAACTTGTCTTTTAA.......2540.25101000000000
...................................................................................................................................................TGGAATAACTTGTCTTTTAAGGTTA..2540.25101000000000
.................................................................................................................................................TTTGGAATAACTTGTCTTTTAAGG.....2440.25101000000000
.............................................................................................................................ATTTCTGATG----GGAGCCTTTGGAATAACT.................2840.25100100000000
...........................................................................................................................GGATTTCTGATG----GGAGCCTTTGGAA......................2540.25101000000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTC..................................................................................2660.17100100000000
....................................................................................................................ACCAGCCGGATTTCTGATG----GGAGCCTT...........................2760.17101000000000
...............................................................................................................CAACCACCAGCCGGATTTCTGATG----...................................2460.17101000000000
....................................................................ACTGCTTGCAAAGATATCGGCCT...................................................................................2360.17101000000000
......................................................................TGCTTGCAAAGATATCGGCCT...................................................................................2160.17100100000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACCAGC....................................................2960.17100100000000
...........................................CAA-TGGCTTAAATCTATCCTCTAAAC........................................................................................................2660.17101000000000
..............................................................................................CCTGACTGGAGCCGCACCAACC..........................................................2260.17101000000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTTCTC...............................................................................2960.17100100000000
....................................................................................................................ACCAGCCGGATTTCTGATG----GGAGCCT............................2660.17100100000000
.....................................................AAATCTATCCTCTAAACTGCTTG..................................................................................................2360.17101000000000
................................................GGCTTAAATCTATCCTCTAAACTGCTTG..................................................................................................2860.17101000000000
.................................................................................................GACTGGAGCCGCACCAACCACCAGCCGG.................................................2860.17101000000000
..............................................................................................CCTGACTGGAGCCGCACCAACCACCAGC....................................................2860.17100100000000
...............................................TGGCTTAAATCTATCCTCTAAACTGCC....................................................................................................2760.17100100000000
........................................................TCTATCCTCTAAACTGCTTGCAAAGA............................................................................................2660.17100100000000
.......................................................................................................AGCCGCACCAACCACCAGCCGGATT..............................................2560.17100100000000
...................................GTAAGATTCAA-TGGCTTAAATCT...................................................................................................................2360.17100100000000
............................................AA-TGGCTTAAATCTATCCTCTAAACT.......................................................................................................2660.17101000000000
.............................................................................................TCCTGACTGGAGCCGCACCAACCACCA......................................................2760.17101000000000
..............................................................CTCTAAACTGCTTGCAAAGATATCGG......................................................................................2660.17101000000000
.....................GA------------GTAAGATTCAA-TGGCTTAAATCT...................................................................................................................2560.17101000000000
.........................................................................................CTTCTCCTGACTGGAGCCGCACCAACC..........................................................2760.17100100000000
....................................................................ACTGCTTGCAAAGATATCGGCCTTCTC...............................................................................2760.17101000000000
.......................................................ATCTATCCTCTAAACTGCTTGCAAAGATA..........................................................................................2960.17101000000000
...................................GTAAGATTCAA-TGGCTTAAATCTATCCTC.............................................................................................................2960.17101000000000
.....................................................AAATCTATCCTCTAAACTGCTTGCA................................................................................................2560.17101000000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGA.........................................2460.17101000000000
........................................................................CTTGCAAAGATATCGGCCTTCTCC..............................................................................2460.17101000000000
...................................................................AACTGCTTGCAAAGATATCGGCCTTCTC...............................................................................2860.17100100000000
...................................................................AACTGCTTGCAAAGATATCGGCCTT..................................................................................2560.17101000000000
.............................................................................................................ACCAACCACCAGCCGGATTTCTGATG----...................................2660.17101000000000
.....................................................................................................GGAGCCGCACCAACCACCAGCCGGA................................................2560.17101000000000
......................................................................TGCTTGCAAAGATATCGGCCTTCT................................................................................2460.17101000000000
........................................ATTCAA-TGGCTTAAATCTATCCTCTAAAC........................................................................................................2960.17100100000000
................................................................................................TGACTGGAGCCGCACCAACCACCAGCCG..................................................2860.17101000000000
...........................................................................................................GCACCAACCACCAGCCGGATTTCT...........................................2460.17100100000000
.................................................................TAAACTGCTTGCAAAGATATCGG......................................................................................2360.17100100000000
.................................................................................................................ACCACCAGCCGGATTTCTGATG----GGAGCC.............................2860.17100100000000
.....................................................................................................................CCAGCCGGATTTCTGATG----GGAGCCTT...........................2660.17101000000000
.......................................................................GCTTGCAAAGATATCGGCCT...................................................................................2060.17101000000000
..................................................................AAACTGCTTGCAAAGATATCGGCCTTCC................................................................................2860.17100100000000
...............................................TGGCTTAAATCTATCCTCTAAACTG......................................................................................................2560.17100100000000
....................................................TAAATCTATCCTCTAAACTGCTTGC.................................................................................................2560.17101000000000
.....................GA------------GTAAGATTCAA-TGGCTTAAATCTA..................................................................................................................2660.17101000000000
....................................................................................................TGGAGCCGCACCAACCACCAGCCGG.................................................2560.17101000000000
....................................................................................................................ACCAGCCGGATTTCTGATG----GGAGC..............................2460.17100100000000
................................................................................................................AACCACCAGCCGGATTTCTGATG----GG.................................2560.17100100000000
......................................................................................................................CAGCCGGATTTCTGATG----GGAGCCT............................2460.17100100000000
.................................................................TAAACTGCTTGCAAAGATATCGGCA....................................................................................2560.17101000000000
.........................................TTCAA-TGGCTTAAATCTATCCTCTAAA.........................................................................................................2760.17101000000000
............................................AA-TGGCTTAAATCTATCCTCTAAACTGCT....................................................................................................2960.17100100000000
.....................................................................CTGCTTGCAAAGATATCGGCC....................................................................................2160.17100100000000
...............................................................TCTAAACTGCTTGCAAAGATATCGGCCC...................................................................................2860.17100100000000
....................GGA------------GTAAGATTCAA-TGGCTTAAATC....................................................................................................................2560.17100100000000
........................................................................................................................GCCGGATTTCTGATG----GGAGCCTT...........................2360.17100100000000
droEre2
CTACC---------------GGA------------GTAAGATTTAT-CGGCTTAAATCTGTCCTCTAAGCTGCTTGCAAAGATATAGGCCTTCTCCTGACTGGAGCCGCACCAACCACCAGCTGGATTTCTGATA----GGAGCCTTTGAAATAACTTGTCTTTTAAGGCTATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................TAAATCTGTCCTCTAAGCTGCTTGC.................................................................................................2511.0011000000

Generated: 05/15/2015 at 03:13 PM