ID:

dvi_1417

 Coordinate:

scaffold_12723:2944220-2944370 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.9 -27.9

Flybase annnotation

exon [dvir_GLEANR_2790:2]; CDS [Dvir\GJ18229-cds]; intron [Dvir\GJ18229-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTATGTATGTAGATTAAACTGAATTCATAAATTTGGTAATCTAAAATGCGATTGGGCAAGCATAACTAAAATAAACAAATTCAATTAAAATTTGAAAAAACCCAAATTAATGGTTGACCCAGTATTTTTTGACATTAAAAAATGATTGTCGACCTATTCTGATTATATGTTAATTAATAAGTATCATTTTGTTTGCCGCAGGCAATATACGATCGTTGGACCGGGAACCATACACTCGCATCGAGATTACA
**************************************************.(((((((((((..........................((((((........))))))...(((((((....(((((((((....)))))))))...))))))).....((((((.....)))))).............)))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106729
mixed whole adult body
 GSM1528803
follicle cells		 M027
male body		 SRR060664
9_males_carcasses_total
 SRR1106727
larvae
 SRR1106730
embryo_16-30h
 M028
head
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR1106714
embryo_2-4h
 V116
male body
................................................................................................................................................................................................................ACGATCGTTGGACCGGGA......................... 18 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AATATACGATCGTTGGACCGGGAAC....................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................ATACGATCGTTGGACCGGGA......................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATA................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATCGTTGGACCGGGAACC...................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................GGCAATATACGATCGTTGGACC............................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGGCAATATACGATCGTTGGACCGGGAACC...................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATACGATCGTTGGACCGGGAA........................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................ACCCAGTATTTTTTGACATTAAAAAATGATTGTCGACCTA............................................................................................... 40 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATATACGATCGTTGGACCGGGAACCATACACTCGCAT.......... 38 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCAATATACGATCGTTGGACCGGGAACCATACACTCGC............ 38 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATATACGATCGTTGGACCGGGA......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGGGAACCATACACTCGCATCGAGA..... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................TAATGGCTGACCCAGTA............................................................................................................................... 17 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................ATCGTTGGACCGGGAACCATACACTCGC............ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................ATATACGATCGTTGGACCGGGAACCATACACTCGCATCGA....... 40 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCGTTGGACCGGGAA........................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATACACTCGCATCGAG...... 39 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATACACTCGCATCGAGAT.... 41 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AATACATACATCTAATTTGACTTAAGTATTTAAACCATTAGATTTTACGCTAACCCGTTCGTATTGATTTTATTTGTTTAAGTTAATTTTAAACTTTTTTGGGTTTAATTACCAACTGGGTCATAAAAAACTGTAATTTTTTACTAACAGCTGGATAAGACTAATATACAATTAATTATTCATAGTAAAACAAACGGCGTCCGTTATATGCTAGCAACCTGGCCCTTGGTATGTGAGCGTAGCTCTAATGT
**************************************************.(((((((((((..........................((((((........))))))...(((((((....(((((((((....)))))))))...))))))).....((((((.....)))))).............)))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060662
9x160_0-2h_embryos_total
 V053
head
 M061
embryo
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
............................................................................................................................................................................................................TATATGCTAGCAGCCTGAC............................ 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTGGTTTGTGAGCGTATC........ 18 2 9 1.00 9 0 2 5 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................TTAGATGCTAGCAGCCTG.............................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGTTTGTGAGCGTATCTCCAA... 21 3 3 0.67 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTGGTTTGTGAGCGTATCT....... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTATATGCTAGCAGCCTGAC............................ 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TATATGCTAGCAGCCTGA............................. 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTACTCACAGCTAGATCAGA........................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAAATGCTAGCAGCCTG.............................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GGGTTTAAGTATCAAGTGGGT.................................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAATTGGCCCTTGGTATGT................. 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAATGGCCCTTGGTATGT................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TATATGCTAGCAGCCTGACA........................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGTTTGTGAGCGTATCT....... 18 2 12 0.25 3 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................CTTTGTTGGGTTTAATTA............................................................................................................................................ 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GTTAAATGCTAGCAGCCTGA............................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCTTTCGTATTCATTTTATTAG............................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGTTTGTGAGCGTATCTGTAA... 21 3 17 0.18 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................GGTTTGTGAGCGTATCTC...... 18 2 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................TATTATATGCTAGCAGCCTG.............................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTATACGCTAGCAGCCTG.............................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TACATGCTAGCAGCCTGAC............................ 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTATAAGCTAGCAGCCTG.............................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCGCTAACCAGTTCGTAT........................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................TCTATGCTAGCAGCCTGAC............................ 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGTATGCTAGCAGCCTGAC............................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTTATCTGCTAGCAGCCTG.............................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTTATGCTAGCAGCCTGAC............................ 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGTATGCTAGCAGCCTGAC............................ 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGGATGCTAGCAGCCTG.............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAGAGGCTAGCAGCCTG.............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGATGCTAGCAGCCTGA............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTTTATGCTAGCAGCCTGA............................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGACATGCTAGCAGCCTG.............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGGTTTGTGAGCGTAGCTG...... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:2944170-2944420 + dvi_1417 TTAT---GTA-TGTAGATTAAAC----------------------------------------------------------TGAATTCATAAATTTG---GTAAT-------------------------------------------------------CTAAAATGCGATTGGGC-----------------------------------------------------AAGCATAACTAA--AATAAACAAATTCAATTAAAATTTGAAAAAACCCAAATTAA----TGGTTGACCCAGTAT-TT----------------------------------------------------T-----------------TT--------------------------------------------------------G-----ACATTAAAAAATGATTG--------TCGACCTATTCTGATTATA------------------------TG-------------------------------------------------------------------------------------------TTAATTAATA-------------------------AGTAT-C--------------------------------ATTTTGTTTGCCGCAGGCAATATACGATCGTTGGACCGGGAACCATACACTCGCATCGAGATTACA
droMoj3 scaffold_6586:87-317 - TGAT---GTA-TGCAGATTAGTC----------------------------------------------------------TGT---------------------G----------C-----TCGGCG-------GCAGCATTCATAATTTATTTGAATTCAAAAAGCCGATTGGGCAATGCAAATCATATCAAAAT-------------------T--------------------------------------------AAATCTAAGC------------------TGGGTGACCTAGTAT-TAT-------------------------------------------------------------------------------------------------------------------------------A-----ACATTATGAAATCGTTG--------TCAATCTACACTGATTAAAATTAATTT-----------------------------------------------------------CGTTG--------------------------------------------------------------------------------------------------------------------------C---TCACCGCAGACAATATACAATCGTTGGACCGGGAACCATACACTCTCATCGAGATTACA
droGri2 scaffold_15126:536478-536729 - TGAG---GTA-TGTAGATTAAAC----------------------------------------------------------AGA---------------------G----------CCCACCTCTGTG-------AA-ATATTA-----------AAAGTC--------A-AAG-----------------------------------------GTTAAACAAATAGAAAAACA-AA----------------T---------------------GC----TAA----TGATTGACCCAGTAT-TTAAATA--------------------TATATGTCTATA--------------------------------TAGA----------------------------------------------------------------TAATGAAATCAATG--------TCGACCTATGCTGATTATTTTTAATTAAGTAACAAACTATTTTTTTTTGTGT---------TT-----------------------TGTT--------------------------------------------------------------------------------------------------------------------------TT---TTGGTGCAGTCAATACACCATTGTTGGCCCGGGAACCATACACTCGAATCGCGACTACA
droWil2 scf2_1100000004516:3222228-3222377 + TAATC---AAATTT----------------------------------------------------------------------------------------------------------------------------------------ACAT------G--------A-AA----------------------A-------------------TTTAATTAAATAAACAAATG-AA----------------T---------------------CG----AAA----T--------------------------------------------------------------GGCT-----------------------------------------------------------------G-CTAGA--ACT---------------------------TT----TCAAACTAATGGAATTATT------------------------T------------------------------------------GATTATTA----------------------------------------------------------------------------------------------------------------------------TTTTGCAGCCTCTATACAGTGATAGCTCCGGGTACCATTCGATCGACTTTTAAGTACA
dp5 4_group1:1648799-1648868 - ATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------------------------------------------------------------GATTACAGTAAATACACCATTGTTGGCCCCGGAACCATACATTCTCATCGCGACTACA
droPer2 scaffold_5:3557836-3557905 + ATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------------------------------------------------------------GATTACAGTAAATACACCATTGTTGGCCCCGGAACCATACATTCTCATCGCGACTACA
droAna3 scaffold_12916:12026663-12026799 - ATTAA---------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------A-------------------TTTAAT----------------------------------------AAAGCTTCGT------------------TGGATGACACA----------CA--------------------TACAT--------------------------------ATATGAATA-----------TTTGAT--A----ATAAACT---------------------------------------------------------------------AA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------ACAAA--------------------------------C-AATT---TAATTGCAGTAAATACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGCGACTACA
droBip1 scf7180000396568:282108-282315 + CATTA---TC-AGAACA----------------------------------------------------------------------------------------------------------------------------TTT-----------GAAATC--------A----------------------------------------------------------------------------------------ATCACAAACAAAATACAACAAAATAAT----TAATTAGCTTTGTTTTATAAAAA--------------------TATAG--------------------------------ACATGATTTTGCAATTAAACTTTGGT--A----ATCCGCTAA-------------------------------------------------TGAT-----------------TAT--------------------------------------------------------------------------------------------------------------------------------------------TCTGCCGAAGCTGATAGATC---------------------------ATTA-TATT---CTTTTTCAGTTTGTATTCTGTGGTGGGGCCCGGCACTATCAGATCGAACTCGAAGTACA
droKik1 scf7180000302382:768642-768851 - TTTAA---------------------------------------------------------------------C------AGA--------ATTTC---TTAATG----------C-----GCTGCG-------AA-GAATTG-----------ATAA--------------------T----------------------------------------------------------------------------------------------GCAAAGTTC--ATAG-----------------------GCTAAGTAATAAAGTTTTTT-----------------TC-GGAATCTTTAGCTCAAAATATGAGTTTCCAAATCGGTCTTAGT--A----ACAAGTACT-------------------------------------------------TAAT-----------------AAT--------------------------------------------------------------------------------------------------------------------------------------------TTAATTGA-------AAT--------------------------------A-ATTC---CAATTGCAGTAAATACACCATTGTGGGCCCCGGAACCATCCACTCGCATCGTGACTACA
droFic1 scf7180000453071:3187-3437 + AATAA---------------------------------------------------------------------A------TAC--------ATTTG---TTAATACAAAATATTGCC----CTTCTGAAATGTGAA-TAA-----------------------------------------------TATTAAAATATTTAATTTTTTAGAAATTCAACATTTTCAGTGATAA-----------------------------------------TAAAGATA--ATAA-----------------------AATAAATAATATTGTATTTT-----------------CTTGCTT-----------------------------------------------------------------G-AA-----------------------------------------------------------------TTTATTAACAAATAAAATTCGATTGTAA---------TCATCTA------------------------------------------------------------------------------------------------------------------------------ATTAGTTGAAAATTC-GATT---CCATTGCAGTAAATACACGATTGTGGGTCCCGGAACTATCCACTCGAACCGCGACTACA
droEle1 scf7180000491242:348040-348177 - TGTTAAGCTG-TCATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA------------------------TGTTAGCCTTAATTTGTTAAATATATATATAAATACCGTTTGATTTTCTTT-------------------------------------------------------------------GA---------------------------------------------C-GACT---TTGTTATAGTAAGTATACCGTTGTGGGTCCCGGAACCATCCACTCCCATCGCGATTACA
droRho1 scf7180000779136:15281-15447 + AAGTAAACAAATTA----------------------------------------------------------------------------------------------------------------------------------------TAATTAAA-------------------------------------T-------------------TCTAAT----------------------------------------AATGGTTCGTAGATACA--------------------------------AA--------------------TTCC-----------------------------------------------------------------------TTAACGGTTTTTTAA-CTGGA--GCA-------------------------CTTTATGT-----------------T--------------------------------------------------------------------------------------------------------------------------------------------TTGGCCAA--CTGAGAAA-C--------------------------------ATTAAATATTTTCCAGCCTCTATACGGTGGTGGGGCCTGGCACCATCCGATCCAACTCCAAGTACA
droBia1 scf7180000302261:1596879-1597020 + AATAG---------------------------------------------------------------------G------T-----------------------------------------------------------------------------------------------AATATAAGATTTGACGAGAT-------------------T--------------------------------------------AAATATAC----------------------------------------------------------------ACTT---------------------------------TACAAATA-----------TTTTAACCAGTACGAAAAGT--------AATAATAA-------------------------------------------------------------------------------------------------------------------------------TGTATTTC----------------------------------------------------------------------------------------------------------------------------CCTAGTCCCAAGTACACCGTTGTGGGTTCAGGCGCCATCCACTCCCATCGAGATTACA
droTak1 scf7180000415115:966049-966356 - CTCA---CTA-TCACCATGAGGTTAAAGTTTACTGGCACTTAAATCTTAAACAAATTTCTGTGTTTGCCTTGAGATTAGATG---------------------------------------------------------------------------------------------------------------AAAT-------------------G--------------------------------------------AAATG------------------------------------------------------------------TAATTTTTAAACATTAAAGT-------------------------------------------CTGAGACAAAAATG--------AATACTCGTAAAT--ATTGATAAT-----------------CC--------------------------------------------C-----------------------------------------------TGTCCTAAAACTTATTGATTTATTAAAAAAATTACCATATTTTTTATAGTTTAATCAATCATTATTATTATTTCCTCTGAAGCTAATAAA-C------------------------ATTTTTT-AATT---TAATTGCAGTAAATACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGCGATTACA
droEug1 scf7180000409463:1864820-1865011 + TTGAG---------------------------------------------------------------------ATTAGAAGAAATTTATAAAATTGAAAGTAAT-------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------TGGG-----------------------------------------------------------------------GAAAATATTTTATAT-ATTAAAC--ATTGATAAC-----------------CTTGATAT-----------------T--------------------------------------------------------------------------------------------------------------------------------------------TGGGTCGAATTTTATATTTCAATTTGAAATAACCTTATT---------TCCAATTC---CAATTACAGTAAATACACCATTGTGGGTCCCGGAACTATCCACTCCCACCGTGATTACA
dm3 chr2L:19551666-19551731 + TTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT----------------------------------------------------------------------------------------------------------------------------GCTTCCAGCAAGTACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGTGACTACA
droSim2 2l:7452562-7452636 - TTAAA---------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGTGGGGCCTGGTACCCTCCGGTCCAACTCCAAGTACA
droSec2 scaffold_3:3214791-3214865 - TTAAA---------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGTGGGGCCTGGTACCCTCCGGTCCAACTCCAAGTACA
droYak3 2R:6053421-6053619 + AGTGC---------------------------------------------------------------------G------TCT--------AGTT--------------------------------------------------------------------------------------------------------------------------------------AATAACAAGTAAATAATAATTTAGCACAGCGGGAAGTTAAAATGACAAAATTCAG----TA---------------------GC----------------TT-----------------ATTGCTT-----------------------------------------------------------------G-CTTGT--GCATTG-----AC--------------------------------------------------------AATCACAATTAGCTATTCC---------TAATATATATGTATATACAT-----TCT-----------------------------------------------------------------------------------------------------------------------T-A--A---TTATCTCGCACCATTTAAAATTGTTGCTAATGGAGCCATAAAGGTCATTTGGGACAACA
droEre2 scaffold_3161:553-798 + TTAT---TTG-T--------------------------------------------------------------------------------------------------------------TCCTTGAAATTTGAA-AAA-----------------A--------------------T-----------------------------ATAAATTTCACATGTTTAGTTAAGCA-AACTAG--AATAGT-ATAT--------------------------------------------------TGAAACA--------------------TAATTTTCTACAATTAAAATGCTT-----------------------------------------------------------------G-CCTAA--GCTATG-----ACATTATATTAGTTTTG--------TA-AACTATGCTG-TCATCTTTAAT----------------------------------------AAATAA----------------------------------------------------------------------------ATAACATAATTTTCT-------------A-C------------------------ACTTCTC-CATT---TAAATGTAGACTGTATAGCGTAGTGGCCCCCGGAACCATAATCCCTAATCGGGACTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTAT---GTA-TGTAGATTAAAC----------------------------------------------------------TGAATTCATAAATTTG---GTAAT-------------------------------------------------------CTAAAATGCGATTGGGC-----------------------------------------------------AAGCATAACTAA--AATAAACAAATTCAATTAAAATTTGAAAAAACCCAAATTAA----TGGTTGACCCAGTAT-TT----------------------------------------------------T-----------------TT--------------------------------------------------------G-----ACATTAAAAAATGATTG--------TCGACCTATTCTGATTATA------------------------TG-------------------------------------------------------------------------------------------TTAATTAATA-------------------------AGTAT-C--------------------------------ATTTTGTTTGCCGCAGGCAATATACGATCGTTGGACCGGGAACCATACACTCGCATCGAGATTACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCGTTGGACCGGGA.........................1812.002000000000000001000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATACGATCGTTGGACCGGGAAC.......................2511.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGTTGGACCGGGA.........................2011.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATA...................2611.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGTTGGACCGGGAACC......................1911.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATATACGATCGTTGGACC.............................2211.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGTTGGACCGGGAA........................2111.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACCCAGTAT-TT----------------------------------------------------T-----------------TT--------------------------------------------------------G-----ACATTAAAAAATGATTG--------TCGACCTA............................................................................................................................................................................................................................................................................4011.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATACGATCGTTGGACCGGGAACCATACACTCGCAT..........3811.001000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATACGATCGTTGGACCGGGAACCATACACTCGC............3811.001000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGATCGTTGGACCGGGA.........................2211.001000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAACCATACACTCGCATCGAGA.....2511.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGGACCGGGAACCATACACTCGC............2811.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGATCGTTGGACCGGGAACCATACACTCGCATCGA.......4011.001000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGGACCGGGAA........................1511.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATACACTCGCATCGAG......3911.001000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGTTGGACCGGGAACCATACACTCGCATCGAGAT....4111.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
TGAT---GTA-TGCAGATTAGTC----------------------------------------------------------TGT---------------------G----------C-----TCGGCG-------GCAGCATTCATAATTTATTTGAATTCAAAAAGCCGATTGGGCAATGCAAATCATATCAAAAT-------------------T--------------------------------------------AAATCTAAGC------------------TGGGTGACCTAGTAT-TAT-------------------------------------------------------------------------------------------------------------------------------A-----ACATTATGAAATCGTTG--------TCAATCTACACTGATTAAAATTAATTT-----------------------------------------------------------CGTTG--------------------------------------------------------------------------------------------------------------------------C---TCACCGCAGACAATATACAATCGTTGGACCGGGAACCATACACTCTCATCGAGATTACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACAATCGTTGGACCGG...........................2020.501100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATCGTTGGACCGGGAA........................2020.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATCGTTGGACCGGG..........................1920.501100000
droGri2
TGAG---GTA-TGTAGATTAAAC----------------------------------------------------------AGA---------------------G----------CCCACCTCTGTG-------AA-ATATTA-----------AAAGTC--------A-AAG-----------------------------------------GTTAAACAAATAGAAAAACA-AA----------------T---------------------GC----TAA----TGATTGACCCAGTAT-TTAAATA--------------------TATATGTCTATA--------------------------------TAGA----------------------------------------------------------------TAATGAAATCAATG--------TCGACCTATGCTGATTATTTTTAATTAAGTAACAAACTATTTTTTTTTGTGT---------TT-----------------------TGTT--------------------------------------------------------------------------------------------------------------------------TT---TTGGTGCAGTCAATACACCATTGTTGGCCCGGGAACCATACACTCGAATCGCGACTACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTCGAATCGCGACTAC.2111.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTCGAATCGCGAC....1811.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGGCCCGGGAACCATACACTCGA............2811.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTCGAATCGCGACT...1911.00110
droWil2
TAATC---AAATTT----------------------------------------------------------------------------------------------------------------------------------------ACAT------G--------A-AA----------------------A-------------------TTTAATTAAATAAACAAATG-AA----------------T---------------------CG----AAA----T--------------------------------------------------------------GGCT-----------------------------------------------------------------G-CTAGA--ACT---------------------------TT----TCAAACTAATGGAATTATT------------------------T------------------------------------------GATTATTA----------------------------------------------------------------------------------------------------------------------------TTTTGCAGCCTCTATACAGTGATAGCTCCGGGTACCATTCGATCGACTTTTAAGTACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTGATAGCTCCGGGTACC......................2311.00101000
......................................................................................................................................................................................................................................AAATG-AA----------------T---------------------CG----AAA----T--------------------------------------------------------------GGCT-----------------------------------------------------------------G-CTAGA--A.......................................................................................................................................................................................................................................................................................................................2511.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTCTATACAGTGATA..................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGGGTACCATTCGATCGACTT.........2711.00101000
dp5
ATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------------------------------------------------------------GATTACAGTAAATACACCATTGTTGGCCCCGGAACCATACATTCTCATCGCGACTACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGGCCCCGGAACC......................1813.0030300000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACACCATTGTTGGCCCCGGAACC......................2711.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATACATTCTCATCGCGACT...2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACATTCTCATCGCGA.....1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATACATTCTCATCGCGAC....2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACATTCTCATCGCGACT...2011.0010100000000
droPer2
ATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------------------------------------------------------------GATTACAGTAAATACACCATTGTTGGCCCCGGAACCATACATTCTCATCGCGACTACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATTCTCATCGCGACT...1912.002110000
droAna3
ATTAA---------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------A-------------------TTTAAT----------------------------------------AAAGCTTCGT------------------TGGATGACACA----------CA--------------------TACAT--------------------------------ATATGAATA-----------TTTGAT--A----ATAAACT---------------------------------------------------------------------AA---------------TA--------------------------------------------------------------------------------------------------------------------------------------------ACAAA--------------------------------C-AATT---TAATTGCAGTAAATACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGCGACTACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCGGAACCATCCACTC..............1911.001010000
droBip1
CATTA---TC-AGAACA----------------------------------------------------------------------------------------------------------------------------TTT-----------GAAATC--------A----------------------------------------------------------------------------------------ATCACAAACAAAATACAACAAAATAAT----TAATTAGCTTTGTTTTATAAAAA--------------------TATAG--------------------------------ACATGATTTTGCAATTAAACTTTGGT--A----ATCCGCTAA-------------------------------------------------TGAT-----------------TAT--------------------------------------------------------------------------------------------------------------------------------------------TCTGCCGAAGCTGATAGATC---------------------------ATTA-TATT---CTTTTTCAGTTTGTATTCTGTGGTGGGGCCCGGCACTATCAGATCGAACTCGAAGTACASizeHit CountTotal NormTotal
No Reads
droKik1
TTTAA---------------------------------------------------------------------C------AGA--------ATTTC---TTAATG----------C-----GCTGCG-------AA-GAATTG-----------ATAA--------------------T----------------------------------------------------------------------------------------------GCAAAGTTC--ATAG-----------------------GCTAAGTAATAAAGTTTTTT-----------------TC-GGAATCTTTAGCTCAAAATATGAGTTTCCAAATCGGTCTTAGT--A----ACAAGTACT-------------------------------------------------TAAT-----------------AAT--------------------------------------------------------------------------------------------------------------------------------------------TTAATTGA-------AAT--------------------------------A-ATTC---CAATTGCAGTAAATACACCATTGTGGGCCCCGGAACCATCCACTCGCATCGTGACTACASizeHit CountTotal NormTotal
No Reads
droFic1
AATAA---------------------------------------------------------------------A------TAC--------ATTTG---TTAATACAAAATATTGCC----CTTCTGAAATGTGAA-TAA-----------------------------------------------TATTAAAATATTTAATTTTTTAGAAATTCAACATTTTCAGTGATAA-----------------------------------------TAAAGATA--ATAA-----------------------AATAAATAATATTGTATTTT-----------------CTTGCTT-----------------------------------------------------------------G-AA-----------------------------------------------------------------TTTATTAACAAATAAAATTCGATTGTAA---------TCATCTA------------------------------------------------------------------------------------------------------------------------------ATTAGTTGAAAATTC-GATT---CCATTGCAGTAAATACACGATTGTGGGTCCCGGAACTATCCACTCGAACCGCGACTACASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTAAGCTG-TCATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA------------------------TGTTAGCCTTAATTTGTTAAATATATATATAAATACCGTTTGATTTTCTTT-------------------------------------------------------------------GA---------------------------------------------C-GACT---TTGTTATAGTAAGTATACCGTTGTGGGTCCCGGAACCATCCACTCCCATCGCGATTACASizeHit CountTotal NormTotal
No Reads
droRho1
AAGTAAACAAATTA----------------------------------------------------------------------------------------------------------------------------------------TAATTAAA-------------------------------------T-------------------TCTAAT----------------------------------------AATGGTTCGTAGATACA--------------------------------AA--------------------TTCC-----------------------------------------------------------------------TTAACGGTTTTTTAA-CTGGA--GCA-------------------------CTTTATGT-----------------T--------------------------------------------------------------------------------------------------------------------------------------------TTGGCCAA--CTGAGAAA-C--------------------------------ATTAAATATTTTCCAGCCTCTATACGGTGGTGGGGCCTGGCACCATCCGATCCAACTCCAAGTACASizeHit CountTotal NormTotal
No Reads
droBia1
AATAG---------------------------------------------------------------------G------T-----------------------------------------------------------------------------------------------AATATAAGATTTGACGAGAT-------------------T--------------------------------------------AAATATAC----------------------------------------------------------------ACTT---------------------------------TACAAATA-----------TTTTAACCAGTACGAAAAGT--------AATAATAA-------------------------------------------------------------------------------------------------------------------------------TGTATTTC----------------------------------------------------------------------------------------------------------------------------CCTAGTCCCAAGTACACCGTTGTGGGTTCAGGCGCCATCCACTCCCATCGAGATTACASizeHit CountTotal NormTotal
No Reads
droTak1
CTCA---CTA-TCACCATGAGGTTAAAGTTTACTGGCACTTAAATCTTAAACAAATTTCTGTGTTTGCCTTGAGATTAGATG---------------------------------------------------------------------------------------------------------------AAAT-------------------G--------------------------------------------AAATG------------------------------------------------------------------TAATTTTTAAACATTAAAGT-------------------------------------------CTGAGACAAAAATG--------AATACTCGTAAAT--ATTGATAAT-----------------CC--------------------------------------------C-----------------------------------------------TGTCCTAAAACTTATTGATTTATTAAAAAAATTACCATATTTTTTATAGTTTAATCAATCATTATTATTATTTCCTCTGAAGCTAATAAA-C------------------------ATTTTTT-AATT---TAATTGCAGTAAATACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGCGATTACASizeHit CountTotal NormTotal
No Reads
droEug1
TTGAG---------------------------------------------------------------------ATTAGAAGAAATTTATAAAATTGAAAGTAAT-------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------TGGG-----------------------------------------------------------------------GAAAATATTTTATAT-ATTAAAC--ATTGATAAC-----------------CTTGATAT-----------------T--------------------------------------------------------------------------------------------------------------------------------------------TGGGTCGAATTTTATATTTCAATTTGAAATAACCTTATT---------TCCAATTC---CAATTACAGTAAATACACCATTGTGGGTCCCGGAACTATCCACTCCCACCGTGATTACASizeHit CountTotal NormTotal
No Reads
dm3
TTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT----------------------------------------------------------------------------------------------------------------------------GCTTCCAGCAAGTACACCATTGTGGGTCCCGGAACCATCCACTCCCACCGTGACTACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGGGTCCCGGAACCATC...................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCGGAACCATCCACT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGTGGGTCCCGGAACCATCCACT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGGTCCCGGAACCATC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCCCACCGTGACTACA1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCATTGTGGGTCCCGG..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTAAA---------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGTGGGGCCTGGTACCCTCCGGTCCAACTCCAAGTACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGT...................................26112.001200000009120000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGT......................................2618.00800000005030000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCTCTATTCGGTGGTGG.................................2416.00600000005010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCTCTATTCGGTGGTGGGGC..............................2715.00500000005000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTCTATTCGGTGGTGGG................................2314.00400000000130000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGG.......................................2514.00400000002020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGT......................................2514.00400000002020000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGG.......................................2814.00400000001030000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTCTATTCGGTGGTGGGG...............................2414.00400000002020000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCTCTATTCGGTGGT...................................2313.00300000012000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGG....................................2513.00300000000030000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCTCTATTCGGTGGTG..................................2313.00300000000030000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTG.....................................2812.00200000000020000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCTCTATTCGGTGGTGGG................................2512.00200000000020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGG.......................................2612.00200000001010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTCTATTCGGTGGTGG.................................2211.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTCGGTGGTGGGGCCTGGTACCCTC...................2911.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGG....................................2411.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTG.....................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGT......................................3011.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTATTCGGTGGTGGGGCCTGG..........................2411.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGT......................................2911.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTG.....................................2411.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTAT...........................................2411.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCTCTATTCGGTGGTGG.................................2511.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGGTGGGGCCTGGTACCCT....................2411.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCTCTATTCGGTGGTGGGG...............................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGG....................................2711.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGT...................................2911.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGTGG.................................2811.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCTCTATTCGGTGGTGG.................................2311.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCTCTATTCGGTGGTGGGGC..............................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTCTATTCGGTGGTGGGGC..............................2511.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGTGGTGGGGCCTGGTACCC.....................2511.00100000001000000000
.TAAA---------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAG..................................................2411.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGT...................................2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTG.....................................2611.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCTCTATTCGGTGGTGGG................................2611.00100000001000000000
droSec2
TTAAA---------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------------------------------------------------------------------------------------------------TTCTCG----------------------------------------------------------------------------------------------------------------------------TTTTGCAGTCTCTATTCGGTGGTGGGGCCTGGTACCCTCCGGTCCAACTCCAAGTACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGTGGTGGGGCCTGGTACCCT....................2511.0010001
droYak3
AGTGC---------------------------------------------------------------------G------TCT--------AGTT--------------------------------------------------------------------------------------------------------------------------------------AATAACAAGTAAATAATAATTTAGCACAGCGGGAAGTTAAAATGACAAAATTCAG----TA---------------------GC----------------TT-----------------ATTGCTT-----------------------------------------------------------------G-CTTGT--GCATTG-----AC--------------------------------------------------------AATCACAATTAGCTATTCC---------TAATATATATGTATATACAT-----TCT-----------------------------------------------------------------------------------------------------------------------T-A--A---TTATCTCGCACCATTTAAAATTGTTGCTAATGGAGCCATAAAGGTCATTTGGGACAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTAT---TTG-T--------------------------------------------------------------------------------------------------------------TCCTTGAAATTTGAA-AAA-----------------A--------------------T-----------------------------ATAAATTTCACATGTTTAGTTAAGCA-AACTAG--AATAGT-ATAT--------------------------------------------------TGAAACA--------------------TAATTTTCTACAATTAAAATGCTT-----------------------------------------------------------------G-CCTAA--GCTATG-----ACATTATATTAGTTTTG--------TA-AACTATGCTG-TCATCTTTAAT----------------------------------------AAATAA----------------------------------------------------------------------------ATAACATAATTTTCT-------------A-C------------------------ACTTCTC-CATT---TAAATGTAGACTGTATAGCGTAGTGGCCCCCGGAACCATAATCCCTAATCGGGACTTCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----------------------------------------------------------------------------ATAACATAATTTTCT-------------A-C------------------------ACTTC.....................................................................2520.5011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACTGTATAGCGTAGTGGCCCC.............................2430.3311000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTG-TCATCTTTAAT----------------------------------------AAAT...............................................................................................................................................................................................................2130.3311000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGCCCCCGGAACCATAATC................2330.3311000000

Generated: 05/16/2015 at 10:52 PM