ID:

dvi_14155

 Coordinate:

scaffold_13042:525468-525618 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.6 -15.54

Flybase annnotation

CDS [Dvir\GJ15779-cds]; exon [dvir_GLEANR_16216:4]; intron [Dvir\GJ15779-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+
mature
star
  1. scaffold_2338:5-25 +
  2. scaffold_3063:574-594 +
  3. scaffold_5385:16-36 +
  4. scaffold_7671:8-28 +
  5. scaffold_10572:1451-1471 +
  6. scaffold_12726:1924098-1924118 +
  7. scaffold_12875:17401510-17401530 +
  8. scaffold_12875:20153772-20153792 +
  9. scaffold_12928:2333541-2333561 +
  10. scaffold_12928:7447690-7447710 +
  11. scaffold_12932:1921899-1921919 +
  12. scaffold_12970:5696960-5696980 +
  13. scaffold_13042:1172889-1172909 +
  14. scaffold_13042:4211088-4211108 +
  15. scaffold_13047:417520-417540 +
  16. scaffold_13047:1368921-1368941 +
  17. scaffold_13047:16304022-16304042 +
  18. scaffold_13049:12930850-12930870 +
  19. scaffold_13049:21064319-21064339 +
  20. scaffold_13324:1602746-1602766 +
  21. scaffold_4195:80-100 +
  22. scaffold_6960:4009-4029 +
  23. scaffold_8853:416-436 +
  24. scaffold_9505:781-801 +
  25. scaffold_10359:4324-4344 +
  26. scaffold_10523:5-25 +
  27. scaffold_12820:80599-80619 +
  28. scaffold_12820:112217-112237 +
  29. scaffold_12820:145304-145324 +
  30. scaffold_12820:167822-167842 +
  31. scaffold_12820:170389-170409 +
  32. scaffold_12820:175089-175109 +
  33. scaffold_12820:182191-182211 +
  34. scaffold_12928:617173-617193 +
  35. scaffold_12928:4105003-4105023 +
  36. scaffold_12975:1122-1142 +
  37. scaffold_12998:1114-1134 +
  38. scaffold_13042:5123582-5123602 +
  39. scaffold_13047:16860413-16860433 +
  40. scaffold_13049:2508460-2508480 +
  41. scaffold_448:950-970 +
  42. scaffold_2008:158-178 +
  43. scaffold_4353:1163-1183 +
  44. scaffold_6267:875-895 +
  45. scaffold_7844:30-50 +
  46. scaffold_8417:702-722 +
  47. scaffold_8525:2700-2720 +
  48. scaffold_8754:444-464 +
  49. scaffold_9826:15-35 +
  50. scaffold_11802:2690-2710 +
  51. scaffold_12788:49500-49520 +
  52. scaffold_12799:309363-309383 +
  53. scaffold_12822:1725910-1725930 +
  54. scaffold_12855:4430569-4430589 +
  55. scaffold_12928:6665509-6665529 +
  56. scaffold_12944:7019-7039 +
  57. scaffold_12963:16619264-16619284 +
  58. scaffold_12970:3894825-3894845 +
  59. scaffold_13047:10689991-10690011 +
  60. scaffold_13049:18217490-18217510 +
  61. scaffold_329:702-722 +
  62. scaffold_9671:1250-1270 +
  63. scaffold_12855:6785389-6785409 +
  64. scaffold_12928:4365215-4365235 +
  65. scaffold_12928:5235633-5235653 +
  66. scaffold_12932:557651-557671 +
  67. scaffold_12932:1985202-1985222 +
  68. scaffold_12958:573155-573175 +
  69. scaffold_12970:3213831-3213851 +
  70. scaffold_12970:8836708-8836728 +
  71. scaffold_12970:9784894-9784914 +
  72. scaffold_13047:2221024-2221044 +
  73. scaffold_13047:4578538-4578558 +
  74. scaffold_13049:17003147-17003167 +
  75. scaffold_13246:1653897-1653917 +
  76. scaffold_13324:1571116-1571136 +
  77. scaffold_12726:516418-516438 +
  78. scaffold_12875:16335668-16335688 +
  79. scaffold_12875:16449910-16449930 +
  80. scaffold_12928:3558203-3558223 +
  81. scaffold_12928:6303341-6303361 +
  82. scaffold_12932:1550049-1550069 +
  83. scaffold_13042:784002-784022 +
  84. scaffold_13042:4210909-4210929 +
  85. scaffold_13047:1030879-1030899 +
  86. scaffold_13047:8037430-8037450 +
  87. scaffold_13049:9971637-9971657 +
  88. scaffold_9993:210-230 +
  89. scaffold_10156:15087-15107 +
  90. scaffold_10316:1119-1139 +
  91. scaffold_10324:661939-661959 +
  92. scaffold_12726:445931-445951 +
  93. scaffold_12726:1743999-1744019 +
  94. scaffold_12820:138189-138209 +
  95. scaffold_12822:3836828-3836848 +
  96. scaffold_12823:199521-199541 +
  97. scaffold_12875:847958-847978 +
  98. scaffold_12875:3899487-3899507 +
  99. scaffold_12966:45004-45024 +
  100. scaffold_12970:2171495-2171515 +
  101. scaffold_12970:11756656-11756676 +
  102. scaffold_13042:640868-640888 +
  103. scaffold_13042:4405541-4405561 +
  104. scaffold_13047:7821123-7821143 +
  105. scaffold_13047:9815500-9815520 +
  106. scaffold_13047:11446114-11446134 +
  107. scaffold_13176:1277-1297 +
  108. scaffold_12726:95059-95079 +
  109. scaffold_12875:9102521-9102541 +
  110. scaffold_12928:1459317-1459337 +
  111. dvi_8992  scaffold_12928:5529119-5529139 +
  112. scaffold_12928:7265149-7265169 +
  113. scaffold_12947:21605-21625 +
  114. scaffold_12958:1804476-1804496 +
  115. scaffold_12958:1810437-1810457 +
  116. scaffold_12963:2620703-2620723 +
  117. scaffold_12963:17532372-17532392 +
  118. scaffold_12970:1430418-1430438 +
  119. scaffold_12970:2414640-2414660 +
  120. scaffold_12970:7866733-7866753 +
  121. scaffold_13047:3597729-3597749 +
  122. scaffold_13049:1424266-1424286 +
  123. scaffold_13049:3570799-3570819 +
  124. scaffold_13050:1997466-1997486 +
  125. scaffold_13050:2002918-2002938 +
  126. scaffold_13052:1895216-1895236 +
  127. scaffold_13213:3543-3563 +
  128. scaffold_2379:34-54 +
  129. scaffold_6379:32-52 +
  130. scaffold_6664:125-145 +
  131. scaffold_7844:51-71 +
  132. scaffold_9427:76-96 +
  133. scaffold_13047:10470885-10470905 +
  134. scaffold_13049:1368703-1368723 +
  135. scaffold_1730:21-41 +
  136. scaffold_3056:226-246 +
  137. scaffold_4353:1627-1647 +
  138. scaffold_6524:1015-1035 +
  139. scaffold_12823:755611-755631 +
  140. scaffold_12856:42698-42718 +
  141. scaffold_12856:44593-44613 +
  142. scaffold_12963:4940123-4940143 +
  143. scaffold_13047:2758968-2758988 +
  144. scaffold_13049:1368636-1368656 +
  145. scaffold_13049:1368898-1368918 +
  146. scaffold_13213:1125-1145 +
  147. scaffold_8468:1074-1094 -
  148. scaffold_12823:2095345-2095365 -
  149. scaffold_12875:7989829-7989849 -
  150. scaffold_12875:12276268-12276288 -
  151. scaffold_12928:1233374-1233394 -
  152. scaffold_12928:4982671-4982691 -
  153. scaffold_12928:7217604-7217624 -
  154. scaffold_12929:27553-27573 -
  155. scaffold_12932:1805099-1805119 -
  156. scaffold_12954:1742874-1742894 -
  157. scaffold_12963:12693436-12693456 -
  158. scaffold_12970:5141327-5141347 -
  159. scaffold_12970:6238215-6238235 -
  160. scaffold_12970:10341806-10341826 -
  161. dvi_14155  scaffold_13042:525488-525508 -
  162. scaffold_13047:11080522-11080542 -
  163. scaffold_13047:11677828-11677848 -
  164. scaffold_13047:13262757-13262777 -
  165. scaffold_13049:3298364-3298384 -
  166. scaffold_13049:5154894-5154914 -
  167. scaffold_12622:1422-1442 +
  168. scaffold_12723:2433528-2433548 +
  169. scaffold_12726:859360-859380 +
  170. scaffold_12822:3987027-3987047 +
  171. scaffold_12823:663708-663728 +
  172. scaffold_12855:3089351-3089371 +
  173. scaffold_12875:20416450-20416470 +
  174. scaffold_12928:2805532-2805552 +
  175. scaffold_12928:3558746-3558766 +
  176. scaffold_12928:6778896-6778916 +
  177. scaffold_12970:1349975-1349995 +
  178. scaffold_12970:2189526-2189546 +
  179. scaffold_12970:3934484-3934504 +
  180. scaffold_12970:11506757-11506777 +
  181. scaffold_12970:11560699-11560719 +
  182. scaffold_13047:3482386-3482406 +
  183. scaffold_13049:8028665-8028685 +
  184. scaffold_13049:15649119-15649139 +
  185. scaffold_13049:23806852-23806872 +
  186. scaffold_13246:705323-705343 +
  187. scaffold_71:24-44 +
  188. scaffold_390:514-534 +
  189. scaffold_2270:1027-1047 +
  190. scaffold_2379:10-30 +
  191. scaffold_3473:399-419 +
  192. scaffold_6833:1382-1402 +
  193. scaffold_10094:74-94 +
  194. scaffold_12528:144267-144287 +
  195. scaffold_12758:288716-288736 +
  196. scaffold_12822:2024134-2024154 +
  197. scaffold_12928:1261658-1261678 +
  198. scaffold_12963:2603350-2603370 +
  199. scaffold_12963:17755254-17755274 +
  200. scaffold_12970:5775058-5775078 +
  201. scaffold_13036:392389-392409 +
  202. scaffold_13042:1233696-1233716 +
  203. scaffold_13047:9417910-9417930 +
  204. scaffold_13047:10470861-10470881 +
  205. scaffold_13049:1368679-1368699 +
  206. scaffold_13049:1735868-1735888 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCATTTTGGGTAGATTTTGTTGTTTTGAGTAGATTTTCTTTGTTGTTTGGTTCTTGATGCATGTTTGCCCGGTCGGATATGCCCGTATTTTATTGTACGGTCCACACATATTTCAACTGTTCTCATTTCTTTTTTTCTTTCTGTGTTTTTCCTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTCTGTTTGCAGTCGGAAACGTCGGGCGACTACAAGCACGCTCTGGCCGCGCTGCTGGGCGG
*******************************************************...(((((((((......)))))))))((((((......))))))...(((((.................................)))))...................................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060680
 9xArg_testes_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 V116
male body		 V047
embryo
 SRR060678
9x140_testes_total
 SRR060655
9x160_testes_total
 V053
head
 SRR060661
160x9_0-2h_embryos_total
 M028
head
 SRR060681
Argx9_testes_total
..............................................................................................................................................................................................................................AAGCACGCTCTGGCCGCGCTG........ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGCTCTGGCCGCGCTGCTGGG... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTCGCAAACGTCGGGTGA................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GATGCATGTTTGCCCGGTCGGATAT........................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACTACAAGCACGCTCTGGCCG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAACGTCGGGCGACTACAAGCACGCT.................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGTCGGAAACGTCGGGC................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGATGCATGTTTGCCCGGTCG................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAACGTCGGGCGACTACAAGC......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAAGCACGCTCTGGCCGCGT.......... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTACAAGCACGCTCTGGCCG............. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTGCCCGGTCGGATATGCC........................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGCACGCTCTGGCCGCGCTGC....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGTCGGGCGACTACAAGCACG...................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................TGTTTGCCCGGTCGGATATGC......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GAAGCGTCGGGCGACTGCAGG.......................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTGTTCTTTTTGTCTTTTTCTGT........................................................ 25 3 19 0.32 6 0 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 1
...........................AGTAGATTAGCCTTGTTGTT............................................................................................................................................................................................................ 20 3 18 0.28 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0
......................................................................................................................GTTCTCATTTCTTTTATT................................................................................................................... 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................AGTAGAGTATCCTTGTTGTT............................................................................................................................................................................................................ 20 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0
.................................................................................................................CATCTGTTCTCCTTTCGTTTTT.................................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................CTACACCTATCTCAACTGTT.................................................................................................................................. 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TTTGGGTATATTTTGTTGCT................................................................................................................................................................................................................................... 20 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AGGAACCGTCGGGGGACT............................... 18 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT...................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGTAAAACCCATCTAAAACAACAAAACTCATCTAAAAGAAACAACAAACCAAGAACTACGTACAAACGGGCCAGCCTATACGGGCATAAAATAACATGCCAGGTGTGTATAAAGTTGACAAGAGTAAAGAAAAAAAGAAAGACACAAAAAGGACAAACAAAAAAAAAAAAAAAAAAAAAAAAACACAAAAAGACAAACGTCAGCCTTTGCAGCCCGCTGATGTTCGTGCGAGACCGGCGCGACGACCCGCC
**********************************************************************...(((((((((......)))))))))((((((......))))))...(((((.................................)))))...................................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060683
160_testes_total
 SRR060673
9_ovaries_total
 V116
male body		 GSM1528803
follicle cells		 SRR060667
160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060688
160_ovaries_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060670
9_testes_total
....................................................................................................................................................................................................................CCCGCTGATGTTCGTGCGAGA.................. 21 0 1 5.00 5 0 1 0 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGAGACCGGCGCGACGA...... 20 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGCCCGCTGATGTTCGTGCGAGAA................. 25 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGTGCGAGACCGGCGCGACGA...... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................ATGCCAGGTGTGTATAAAGTT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AACGGGCCAGCCTATACGGGC...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCGTGCGAGACCGGCGCGACG....... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................ACAAAGGACAAACAAAAACAAAAAAAAAAAAAAAAA...................................................................... 36 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGCTGATGTTCGTGCGAG................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACGTCAGCCTTTGCAGCCCGC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGAGACCGGCGCGACGAC..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTGCGAGACCGGCGCGACGAC..... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GCCCGCTGATGTTCGTGCGAGA.................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GACACAAAAAGGACAAACAAAAAA....................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGAGACCGGCGCGACGACCCGC. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ACAAAACTCATATAAAAGAAACAAC.............................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................AGGTGTGTATAAAGTTGACAA.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAAAGACACAAAAAGGACAAACAA........................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAAGGACACAAAAAGGACAAACAA........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGATGTTCGTGCGAGACCGG.............. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................GGTGTGTATAAAGTTGACAAGAGT.............................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTGATGTTCGTGCGAGACC................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGTGCGAGGCCGGCGCGACTA...... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CCGCTGATGTTCGTGCGAGA.................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CCGCTGATGTTCGTGCGAGAC................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTGATGTTCGTGCGAGACCG............... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGCTGATGTTCGTGCGAGAC................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................CGCTGATGTTCGTGCGAGACC................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTTGCAGCCCGCTGATGTTC.......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACGGGCCAGCCTATACGGGCA..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CCTTTGCAGCCCGCTGATGT............................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAGACACAAAAAGAACAAAAAAAAAAAAAAAAAAAA............................................................................. 36 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AACAAAAAAAAAAATAAAAAAAAAAAAACAGAAAAA............................................................ 36 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGAAAGACACAAAAAGGACAA............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGACACAAAAAGGACAAACAAAAAA....................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA........................................................................ 21 0 20 0.50 10 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GAAAAACAAAAAAAACAACAAAAAAAAAAAAACACA................................................................ 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AACAAAAAAAACAAAAAAAAAAAAAAAACACAAAAC............................................................ 36 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAAAAAAAAAAATAAAAAAAAAAACGCAAAAAGGC......................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAGTAAAGAAAAAATGAAAGG............................................................................................................. 21 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAATAAACAAAAAAAGACAAA...................................................... 36 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAACAAGACAAACAAAAAAAAAAAAACAAAAAAA........................................................................ 36 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAAAGGACAAAACAAAAAAAAAAAAAAAAAAAAAAA..................................................................... 36 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................AACAAAAAAAAAAAAACACACAAAAAAACACAAAAA............................................................ 36 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAGAAAGACACAGACAGGAC................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACACAAA.............................................................. 28 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAGGAACAAACAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................... 36 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAAAAAAAAAAAAAAACAACACAAAAAAAGACAA....................................................... 36 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAACACAA............................................................... 26 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA..................................................................... 22 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAC................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGAAAAAAGGTAAGGCACAAA....................................................................................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACACAAA.............................................................. 26 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAGTTAAGAAAAAATGAAAGG............................................................................................................. 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAAACAAAAAAAAAAAAAAAAAAACACAAACAAAA............................................................... 36 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA............................................................. 35 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAAACAAAAAAAAAAAAAAAA............................................................................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAACAC................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAACAAAAAAATAAAAAAAAAGAAAAAAACAAAAAA............................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA............................................................. 36 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAAAAAAAAAAAAAAATACACAAA.............................................................. 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACACAAAAA............................................................ 36 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAACACAAAA............................................................. 36 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................AAAAAAAAAAAAAAAAAAAACAAAACACAAAAAACC......................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAAAAAAACACAAA.............................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:525418-525668 - dvi_14155 TCATTTT---------G------------------------------GGTAGATTTTGTTGT-TTTGAGTAGATTTTCTT------TGTTGTTTGG---------------------------------------------------------------------TTCTTGATGCATGTTTGCCCGGTCGGATATGCCCGTATTTTATTGTACGGTCCACACATATTTCAACTGTTCTCATTTCT--------------------TTTTTTC---------------------T----------TTCTG----------TGTTTTTCCTGTTTGTTTTTTTTTTTTTTTTTTTTTT------TTTGTGTTTTTCTGTTTGCAGTCGGAAACGTCGGGCGACTACAAGCACGCTCTGGCCGCGCTGCTGGGCGG
droMoj3 scaffold_6680:19943377-19943542 - ACTTTGTT------------------------------------------------------------------------------TGTTGTTTGTTTCGGTGT------------------------------------------------------------------------------GAGTGTGT---------GTGTATGTAT-----------------------GCTATATCTTTAGTTGTTGCTGTTGTTGCGGCATTCTGTTTTAATGTGTTTATTTTGTG-----------------------------------------TATTTTTTTTTTTTTTTTTTTTTT------TTTTTTTCT--------------------TTTTGTCGGCCTTATAAAAGGCCAAACGGC------------
droGri2 scaffold_15081:2056510-2056689 - ATTTTTC------------------------------------------------------------------------------TCGTTCCCATTCTCGATGT-----AGTCGGGGTGGGCGCGTCTGTCCAGCATTTGCTTTGATGGTGCTCTTCCAGCTGCCTCAGCTATTGTTG--------------------------------------------------------------------------------------ATTCTTTTTCCATACACTTTTTTCTCGTTTTTCTTTAATCATTTG----------TTTTTTTTCTTTTCTTTTTT----------TCATTGC------TGTATTT----------------------------------------------------------CTATTT
droWil2 scf2_1100000004963:4472930-4473113 - TCACTTT---------G------------------------------ATTTGATGTTGTTTTGATTTCTTTTCTTTTTTT------TGTTATTTTG---------------------------------------------------------------------TTTGTTATTTTTGATTTTTATGTTT---------GAAAATAATT-----------------------TGCTCTCCTTTAATTTTTGGGGTTTTAAGAAGAATTTCTT-----TATTTTATTTTATA-----------------------------------------T--TTTT----------TTTTTCTTTTTTTTTTGT---------------------------------------------ATATTCTGATTTTTAGACTGA
dp5 XL_group1e:7164156-7164301 + TTTCCATTTCCATTACGGTGTTTGTGTTGTCCTAGGATGTAAGTATTGGTAGACCCA------TTGCCTTCTCTAATCTCTAATCTCGT---------G-----TCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCGGGCGACTACAAGCGGGCCCTGACAGCCCTGCTGGGCGG
droPer2 scaffold_13:1389552-1389620 - TTTCGTG-------------------------------------------------------------------------------------------------TCTGTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCGGGCGACTACAAGCGGGCCCTGACAGCCCTGCTGGGCGG
droAna3 scaffold_13417:1690560-1690633 + TCTCTCTTTT------------------------------------------------------------------------------T---CC-----------ATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCCGGAGACTACAAACGGGCCCTGACCGCCCTGCTGGGAGG
droBip1 scf7180000396621:183005-183061 - TT-------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGCGGAGACCTCCGGAGACTACAAACGGGCCCTGACCGCCCTGCTGGGAGG
droKik1 scf7180000302395:563936-564015 - TTTTTCTTTT------------------------------------------------------------------------------T---TTTTTTG-----GTTTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCCGAGACCTCCGGCGACTACAAGCGGGCCCTGACTGCCCTACTTGGAAC
droFic1 scf7180000453829:497345-497414 - GTGTTTA------------------------------------------------------------------------------------------------ATTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAAACCTCTGGCGACTACAAAAGGGCTTTGATTGCCCTGCTTGGAAC
droEle1 scf7180000491249:2176841-2176898 + TTTGTTTTGT------------------------------------------------------------------------------T---TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTG----------GGTTTTCGCAGTTTGGTTTT----------TCT----------------------------------------------------------------TTGTTTTTTTTTTGTTT
droRho1 scf7180000779616:68953-69033 + TTTCATC------------------------------------------------------------------------------TCATCTTTA--TTT-----TTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACTTCTGGGGACTACAAAAGGGCCCTAACAGCCTTACTTGGAAC
droBia1 scf7180000302126:2840977-2841044 - TTTTCCG------------------------------------------------------------------------------------------------C--TCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGAACTCTGGCGACTACAAGCGGGCCCTGACCGCTCTACTGGGAAC
droTak1 scf7180000415248:228919-229001 + TTTCATC------------------------------------------------------------------------------CCGTTTTTAAATCG-----TTCTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCGGAGACCTCTGGCGACTACAAGCGGGCCCTGACCGCCCTTCTTGGAAC
droEug1 scf7180000409230:300040-300118 + TTTTTTTATT------------------------------------------------------------------------------T----AATTAA-----TATATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCGGAGACCTCCGGTGATTATAAACGGGCCCTGACTGCATTACTTGGAAC
dm3 chrUextra:2440756-2440820 - TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACAGCCCTACTTGGATC
droSim2 x:18901253-18901317 - TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACTGCCCTACTGGGATC
droSec2 scaffold_8:2291525-2291589 - TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACTGCCCTACTGGGATC
droYak3 2R:3831114-3831211 + TACTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACCTTTGCCACCAAATTTCATTTCT--------------------CCTTTTC---------------------T----------TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT----------TTTCTTT------TCTCTTC----------------------------------------------------------TTTTCT
droEre2 scaffold_4690:10190865-10190929 - TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCCGGTGACTACAAGCAGGCGCTGACTGCCCTACTTGGATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCATTTT---------G------------------------------GGTAGATTTTGTTGT-TTTGAGTAGATTTTCTT------TGTTGTTTGG---------------------------------------------------------------------TTCTTGATGCATGTTTGCCCGGTCGGATATGCCCGTATTTTATTGTACGGTCCACACATATTTCAACTGTTCTCATTTCT--------------------TTTTTTC---------------------T----------TTCTG----------TGTTTTTCCTGTTTGTTTTTTTTTTTTTTTTTTTTTT------TTTGTGTTTTTCTGTTTGCAGTCGGAAACGTCGGGCGACTACAAGCACGCTCTGGCCGCGCTGCTGGGCGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACGCTCTGGCCGCGCTG........2113.003003000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCTGGCCGCGCTGCTGGG...2112.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GATGCATGTTTGCCCGGTCGGATAT..............................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAGCACGCTCTGGCCG.............2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGTCGGGCGACTACAAGCACGCT....................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCGGAAACGTCGGGC...................................2111.001000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGATGCATGTTTGCCCGGTCG...................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCGGGCGACTACAAGC.........................2111.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCACGCTCTGGCCGCGT..........2011.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCACGCTCTGGCCG.............2011.001000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTGCCCGGTCGGATATGCC...........................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGCTCTGGCCGCGCTGC.......2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CGTCGGGCGACTACAAGCACG......................2111.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................TGTTTGCCCGGTCGGATATGC............................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT------T......................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
ACTTTGTT------------------------------------------------------------------------------TGTTGTTTGTTTCGGTGT------------------------------------------------------------------------------GAGTGTGT---------GTGTATGTAT-----------------------GCTATATCTTTAGTTGTTGCTGTTGTTGCGGCATTCTGTTTTAATGTGTTTATTTTGTG-----------------------------------------TATTTTTTTTTTTTTTTTTTTTTT------TTTTTTTCT--------------------TTTTGTCGGCCTTATAAAAGGCCAAACGGC------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......T------------------------------------------------------------------------------TGTTGTTTGTTTCGGTGT------------------------------------------------------------------------------G..........................................................................................................................................................................................................................................................2011.001000010
....................................................................................................GTGT------------------------------------------------------------------------------GAGTGTGT---------GTGTATGTAT-----------------------G........................................................................................................................................................................................................2370.141010000
..............................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT------TTTTTTTCT--------------------TT........................................33190.051001000
droGri2
ATTTTTC------------------------------------------------------------------------------TCGTTCCCATTCTCGATGT-----AGTCGGGGTGGGCGCGTCTGTCCAGCATTTGCTTTGATGGTGCTCTTCCAGCTGCCTCAGCTATTGTTG--------------------------------------------------------------------------------------ATTCTTTTTCCATACACTTTTTTCTCGTTTTTCTTTAATCATTTG----------TTTTTTTTCTTTTCTTTTTT----------TCATTGC------TGTATTT----------------------------------------------------------CTATTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCACTTT---------G------------------------------ATTTGATGTTGTTTTGATTTCTTTTCTTTTTTT------TGTTATTTTG---------------------------------------------------------------------TTTGTTATTTTTGATTTTTATGTTT---------GAAAATAATT-----------------------TGCTCTCCTTTAATTTTTGGGGTTTTAAGAAGAATTTCTT-----TATTTTATTTTATA-----------------------------------------T--TTTT----------TTTTTCTTTTTTTTTTGT---------------------------------------------ATATTCTGATTTTTAGACTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TTTCCATTTCCATTACGGTGTTTGTGTTGTCCTAGGATGTAAGTATTGGTAGACCCA------TTGCCTTCTCTAATCTCTAATCTCGT---------G-----TCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCGGGCGACTACAAGCGGGCCCTGACAGCCCTGCTGGGCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................TCTAATCTCGT---------G-----TCTCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G.....................................................2111.0010100000000
......................................GTAAGTATTGGTAGACCCA------TTG...............................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
droPer2
TTTCGTG-------------------------------------------------------------------------------------------------TCTGTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCGGGCGACTACAAGCGGGCCCTGACAGCCCTGCTGGGCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCTCTCTTTT------------------------------------------------------------------------------T---CC-----------ATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACCTCCGGAGACTACAAACGGGCCCTGACCGCCCTGCTGGGAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................GACCTCCGGAGACTACAAACG........................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................GACCTCCGGAGACTACAAACGG.......................2211.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGAGACTACAAACGGGCCCTG.................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGACCGCCCTGCTGGGA..2011.001000001
droBip1
TT-------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGCGGAGACCTCCGGAGACTACAAACGGGCCCTGACCGCCCTGCTGGGAGGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTTCTTTT------------------------------------------------------------------------------T---TTTTTTG-----GTTTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCCGAGACCTCCGGCGACTACAAGCGGGCCCTGACTGCCCTACTTGGAACSizeHit CountTotal NormTotal
No Reads
droFic1
GTGTTTA------------------------------------------------------------------------------------------------ATTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAAACCTCTGGCGACTACAAAAGGGCTTTGATTGCCCTGCTTGGAACSizeHit CountTotal NormTotal
No Reads
droEle1
TTTGTTTTGT------------------------------------------------------------------------------T---TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTG----------GGTTTTCGCAGTTTGGTTTT----------TCT----------------------------------------------------------------TTGTTTTTTTTTTGTTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTCATC------------------------------------------------------------------------------TCATCTTTA--TTT-----TTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGACTTCTGGGGACTACAAAAGGGCCCTAACAGCCTTACTTGGAACSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTCCG------------------------------------------------------------------------------------------------C--TCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGGAGAACTCTGGCGACTACAAGCGGGCCCTGACCGCTCTACTGGGAACSizeHit CountTotal NormTotal
No Reads
droTak1
TTTCATC------------------------------------------------------------------------------CCGTTTTTAAATCG-----TTCTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCGGAGACCTCTGGCGACTACAAGCGGGCCCTGACCGCCCTTCTTGGAACSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTTTATT------------------------------------------------------------------------------T----AATTAA-----TATATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCGGAGACCTCCGGTGATTATAAACGGGCCCTGACTGCATTACTTGGAACSizeHit CountTotal NormTotal
No Reads
dm3
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACAGCCCTACTTGGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..CTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGAC..........................................2161.3380000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000200000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....TTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCT........................................2161.3380000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTGACTACAAGCGGGC.....................2161.1770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
..............................................................................................................TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTG..................................2261.1770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACCTCTGGTGA.................................2060.6740000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.TCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGA...........................................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCT......................................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAGACCTCTGGTGACT...............................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000
...TTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACC.........................................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGACTACAAGCGGGCC....................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGGAGACCTCTGGTGACTACA............................2160.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACTACAAGCGGGCCCTGAC...............2460.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTGGTGACTACAAGCGG.......................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....TTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGT...................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGAC...............2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...TTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGAC..........................................2060.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGACTACAAGCGGGCCCT..................2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CCAGGCGGAGACCTCTGGTGA.................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCGGGCCCTGACAGCCCTACT......2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGGAGACCTCTGGTGACTACAAGCG........................2560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTACAAGCGGGCCCTGACAG.............2560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTACAAGCGGGCCCTGACAGCC...........2760.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCT......................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGACAGCCCTAC.......2960.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCT........................................2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAG............................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGCCCTGACAGCCCTACTTGGAT.2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTG.....................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTGACTACAAGCGGGCCCTGACA..............2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAGCGGGCCCTGACAGCCCT.........2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTG.....................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGA................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACTACAAGCGGGCCC...................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGACAGCCC..........2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTG.....................................2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGT...................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTC.......................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGACAGCCCTACTTGGAT.2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTG..................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTGACTACAAGCGGGCC....................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACCTCTGGTGAC................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCGGGCCCTGACAG.............2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACTACAAGCGGGCC....................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGACAGCCCTACTTGAT..2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACCTCTGGTGACTAC.............................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GACCTCTGGTGACTACAAGCGC.......................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCGGGCCCTGAA...............2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCGGGCCCTGACA..............2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACAGCCCTACTTGGA..1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACCTCTGGTGACTACA............................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTC.......................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGACAGCCCT.........2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACAGCCCTACTTGGATC2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGGAGACCTCTGGTGACTACAAGCGGT......................2760.1710000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACTACAAGCGGGCCCTG.................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGACTACAAGCGGGCC....................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGACAGCCCTA........2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGACTACAAGCGGGCCCTGAC...............2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTGGTGACTACAAGCGT.......................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GACCTCTGGTGACTACAAGCGGGCCA...................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGA.................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACC.........................................2060.1710000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGACCTCTGGTGACTACAAGCG........................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCT......................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGG....................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..CTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACC.........................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGAGACCTCTGGTGACTACAAGCG........................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGT...................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GACCTCTGGTGACTACAAG..........................1960.1710000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCGGGCCCTG.................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGG....................................2160.1710000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAGCCCTACTTGGATC2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACTGCCCTACTGGGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGGCCCTGACTG.............1611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGACTACAAGCGGGCCCTGAC...............2611.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGAC...............2111.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGACTACAAGCGGGCCCTGG................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCGGGCCCT..................1711.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAGCGGGCCCTGACTG.............2111.00100000000000010000
droSec2
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCTGGTGACTACAAGCGGGCCCTGACTGCCCTACTGGGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TACTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACCTTTGCCACCAAATTTCATTTCT--------------------CCTTTTC---------------------T----------TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT----------TTTCTTT------TCTCTTC----------------------------------------------------------TTTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTCTTTA------------------------------------------------------------------------------------------------C-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCGGAGACCTCCGGTGACTACAAGCAGGCGCTGACTGCCCTACTTGGATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:05 PM