ID:

dvi_14142

 Coordinate:

scaffold_13042:482837-483113 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.5 -4.5 -4.4

Flybase annnotation

exon [dvir_GLEANR_16221:5]; exon [dvir_GLEANR_16221:4]; CDS [Dvir\GJ15785-cds]; CDS [Dvir\GJ15785-cds]; intron [Dvir\GJ15785-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12822:1495777-1495797 -
  2. scaffold_12875:20382624-20382644 -
  3. dvi_23566  scaffold_12963:18586458-18586478 -
  4. dvi_14142  scaffold_13042:482902-482922 -
  5. scaffold_13042:3219253-3219273 -
  6. scaffold_13049:11335271-11335291 +
  7. scaffold_13049:12529754-12529774 +
  8. scaffold_13246:2424560-2424580 +
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGAGACCGCCTCCCTCTCATCTGCCGACAATGATCCCGAGGATAGTCAGGTATACTACACACAACACACTCAAACACACACGCATACACAACTCACACACACACACACGCGCACACTTTGCTCTATTTTTTCCTCTCTCATTTTCTCTTCCTCTCTGATCTCGTTCTATTGTTGCTCGCTACTCGCTGCTCGTTACTCGCTACTCGTTACACTTTGCTTTATCTTTCCCACTCTCTTCCTCTCTCTCTCTCTCTTTCCCTTTCTCTCTCTCTCTCTTTCTTTCTCTTTGATCTCGTTCTATTGTTACTCGCTACTCGCTGATTCAGCACTCCTCTCTGCTCTCACTTACACAGGACTCGGTCTTCGAGGGCGTGCT
**************************************************.......(((...(((....(((((......(((.........................)))..................................................((.......((.((..((........))..)).))........))...............................................................................)))))....)))....)))...((((.....)).)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060679
140x9_testes_total
 SRR1106729
mixed whole adult body
 SRR060664
9_males_carcasses_total
 SRR060675
140x9_ovaries_total
............................................................................................................................................................................TTGCTCGCCACTCGCTGCTCGT....................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................AGTCAGCACTCCTCTCTGCTCTCACTT............................. 27 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................TTTCTCTCCCGCGCTGATCTC...................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
.....................................CGAGGATAGTCAGGACT................................................................................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................................CTCTCTCTCTCTCTTTCCCTT................................................................................................................... 21 0 8 0.13 1 0 0 0 0 1 0
.....................................CGAGGATAGTCAGGACTC.................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................TTACATTTCTCTCTCTCTTTCTTT.................................................................................................. 24 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TGCTCTGGCGGAGGGAGAGTAGACGGCTGTTACTAGGGCTCCTATCAGTCCATATGATGTGTGTTGTGTGAGTTTGTGTGTGCGTATGTGTTGAGTGTGTGTGTGTGTGCGCGTGTGAAACGAGATAAAAAAGGAGAGAGTAAAAGAGAAGGAGAGACTAGAGCAAGATAACAACGAGCGATGAGCGACGAGCAATGAGCGATGAGCAATGTGAAACGAAATAGAAAGGGTGAGAGAAGGAGAGAGAGAGAGAGAAAGGGAAAGAGAGAGAGAGAGAAAGAAAGAGAAACTAGAGCAAGATAACAATGAGCGATGAGCGACTAAGTCGTGAGGAGAGACGAGAGTGAATGTGTCCTGAGCCAGAAGCTCCCGCACGA
**************************************************.......(((...(((....(((((......(((.........................)))..................................................((.......((.((..((........))..)).))........))...............................................................................)))))....)))....)))...((((.....)).)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 V116
male body		 SRR060666
160_males_carcasses_total
 V053
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060658
140_ovaries_total
 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
................................................................................................................................................................................AGCGATGAGCGACGAGCAATG.................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATGAGCGACGAGCAATG.................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCGGAGGGAGAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGAAGAAAAGGGGAGACTAG........................................................................................................................................................................................................................ 20 3 11 1.00 11 0 1 0 0 6 1 0 0 0 0 0 0 0 0 0 1 1 1 0
...............................................................................................................................................................................GAGCGATGAGCGACGAGCAATGAGCGA............................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAGAAAAGGGGAGACTAG........................................................................................................................................................................................................................ 18 2 8 0.88 7 0 1 0 0 1 2 0 2 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................AAGAAAAGGGGAGACTAGTG...................................................................................................................................................................................................................... 20 3 11 0.36 4 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................GTTGTGATAGTTTGTGTGTGC...................................................................................................................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAAGAAAAGGGGAGACTAG........................................................................................................................................................................................................................ 19 3 20 0.25 5 0 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGAGAGACTAAAGCAAG.................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCGATGAGCAACGAGCTATGAGCGA............................................................................................................................................................................... 25 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................CTGTTACTAGTGACCCTATC........................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AGAGAGAGAAAGAAAGAGAAA........................................................................................ 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AGCGATGAGCAACGAGCAATG.................................................................................................................................................................................... 21 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAAAG....................................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTGTTGAGTGTGTGTGT................................................................................................................................................................................................................................................................................. 18 0 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATATTGAAAGGCTGAGAGAA........................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGGAGAGGGGTGTTACTAG..................................................................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AGAAGGAGAGAGAGAGAGAG........................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................AGAGAGAGAGAAAGAAAG............................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................AAAGAGATAAGAAAGGAG................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAGAGAGAGAGAGAGAA................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GTGTTCGTATGTGTTGTGTG........................................................................................................................................................................................................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13042:482787-483163 - dvi_14142 ACGAGACCGCCTCCCTCTCATCTGCCGACAATGATCCCGAGGATAGTCAGGT----ATACT-------ACACACAACACAC--TCAAAC--ACACACGCATACA---C-----------------A---ACTCACACACACACACACGCGCAC--ACTTTGCT---------------------------CTA----------------------------------------------------------------------------------------TTTTTTCCT-CTCTC-------------ATT---TTCT----------------------------------CTTCCTCTCTGATCTCGTTCTATTGTTGCTCGCTACTCGCTGCTCGTTACTCGCTACTCGTTACACTTTGCTTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCC--------C-AC----T--------------------------------CTCTTCCTCTCTC-----T--CTCTCTCTTT--C--------------CCTTTCTCT------------CT--------------------------------------------------------CTCTCTC-TTTCTTTCTCTTTG---ATCTCGTTCTATTGTTACTCGCTACTCGCTGATTCAGCACTCCTCTCTGCTCTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGACTCGGTCTTCGAGGG--CGTGCT-----------------
droMoj3 scaffold_6540:12187132-12187389 - TGCTTTAC---------------------------------------------------------------------------AC------AAGAAACTGC---GCAT-----TCC--CATACACACACACGTACGCACGCATGC---------------------------GTTTG--------------------------TCTTAATATCT--------GTCTGTCTCCCT-----GTCTA---------TACCACAGTCT----------GTCTCTTCGGTTTTCT-CTCTC------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCC--------------------------CT-----------------------------------------------------------------------------CTCT-----------TTCTCTC------------------------------TCGCTCTCAC-------------TCCCTCTCT-CTGT-------------------------------C-----T--CTCTCTCTTT--C--------------TCTTTCTCT------------CTCTCTCTCGCTCTCACTCCTTCTCT------------------CT--GTC--TGTCTGTCTCTCT-CACT----------------------------------------------CTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTT---------------C----TCT----------------CTCT--CTCTCT-----------------
droGri2 scaffold_15203:5811585-5811923 - ATGAGACAGCTTCGCTTTCATCCGCCGATAATGATCCCGAGGATAGTCAGGT----ATGCTCCCATGCA---------CAC--A--CACACACACACACACACAG-ACATAC---ACACACACACACACACACACACACACAGAC---------------------------ATACA----------------------CACAC---------A--------CAC---------------------------------------------------------------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACATACACTTACACAAATACACTTACACAAATACACATACACCTTTCTTT-------------TTCGTTTCGTTTTTCGTTT-CGTTGCTTTCGTCT-------------CGTTTTCTCTATTCGAAACTG-------------------------------TTCT-TGTTCT----------CGC------------TACTCGCTACTCGCTCGTTCT------------G-----------------------------------------------------------------------------------------------------ATTTAGCACTCCTCTCTGCTCTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGACTCGGTCTTCGAAGG--CGTCCT-----------------
droWil2 scf2_1100000004511:10234427-10234677 - TTCGTTTCATC-----------TGATGGCAACAAAG-----------CAGCTGAACAACCC-------TCACCCCACACAC--ACACACACTCACACACACACA------------------------CACTCACACACACACACAGGAACACCCACTC-----------------------GTTTAGCCTTGCTTG--------------CTG--------ATTAAGT----------------------------------------------------------------------A--ATCAAAG-----T------ATTTGG---------------------------------------------------------------------CAGCTAATTTATCGCCACTT---------------------------------------------------------------------------------------------------------------------------TACCCCTTTCTC-TCTCTCT----------------------------------------------------C-TC----T--------------------------------CTCTCT----CTCTCT-CT--CTCTCTCTCTCTCTCTCTCTGTATCTCT--------------------------------CTCTT----TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------T----TTA----------------GACT--TTCTAT-----------------
dp5 4_group5:1769491-1769721 - ATACATCTCTC----------------------------------------------------------------------TC--------TCTCTCCCAC-------TCTT-------------------------------------------------C-GTCTC------------------------------------------------------------------TCCCTCTATCTC---------------TCT----------CTCTCTATCTATCTAT-CTCTCCCTCAC-------TCT---CTTTCTC-----TTT----CTCTCTCTCACTC-CTCTC-----------------------------------------------------------------TCTCTCTC--------------------------------ACTCTCTC-TCACTC------------------------------------------------------------------TCA---------------------------------------------------------------CTCTCT-CTCTCACTCTCTCT------------------------------CTCTCTCTC--T-CTCTTA----------C--------------TCTCTCTCT------------------------CTTAC----TCTCT--CTCTCACTCTTACTCTCTCTCT-----------------CTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TCT---------------C----TCT----------------CTCT--CTCACT-----------------
droPer2 scaffold_1:304220-304448 - ACTCTCTCTCT-C--------------------------------------------------------------------AC--------TCTCTCTCAC-------TCTC-------------------------------------------------TC----------------------------------------------------------------------T-----CTCATTCTC---------------T----------CTCTCACT-------------CTCTCTC-------ACT---CTTTCTC-----TCTCTCTCTCTCTCTCACTCTTTCTC-----------------------------------------------------------------TCTCTC----------------------------------TCTCTCTC----------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCTCT-----------CT--CTCTCTCTCT-CTCT-------------------------------C-----T--CTCACTCTTT--C--------------TCTCTCTCT------------CTCTCTCTCTCTCTCAC----T--------------CTTTCTCTCT--CTC--ACTCTTTCTCTCT-CTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ACT---------------C----TCT----------------CACT--CTCACT-----------------
droAna3 scaffold_13417:6764833-6765052 - CTCTGTCTCTC----------------------------------------------------------------------TG--------TCTCTCTGTC-------TCTC-------------------------------------------------T-----------------------------------------------------------------------------GTC--T---------------------------------------------------------------------------------------------------------------------CTCTGTCTCTCTGTC-----------------------------------------TCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTC----------------------------------------------------------------------------------------------------------------------TCTCTGTCTCTCTGT-------------CTCTCTGTCTCTCTGT-CTCT-------------------------------CTGT-CTCTCT----------GTC------------TCTCTGTCTCTCTGTCTCTCT------------GTCTC----TCTGT--CTCTCT--------------GTC--TCTCTGTCTCTCT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-CTT--------------------GCTC--------------AGTCT--CAGTCT-----------------
droBip1 scf7180000396735:1035592-1035890 - CAAACACACTC----------------------------------------------------------------------AC--------ATACAGAGACACAGGAC-----------------------ACACACACACACACATTTATGAGGC-----T------GAGTGTGTGTGTTTGCGTATC--------------CTTGAGCGTCA--------GTTGGGCGCCGG-----GCATG---------TTGCATGAGTT----------GTCGTTGACGCGTTGA-----C-------------ATT---TTTC----------------------------------TTCCCTGCCTGCTGAAGTCCTGTT-----------------------------------------GCCCCTCAATACCCACACACT--------------------------C-------GCACATACTCCCCACTCT-CT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTA-----T--ATATTTT-----T--------------TTACAGTTT------------TTTCGTGTTTGCCTGAC----T--------------TATGCAATCG--TTA--GCAATCCTTTTC-TTTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCT---------------C----CTC----------------GACT--TCCTTC-----------------
droKik1 scf7180000302485:26550-26806 + CTCTCTCTCTC----------------------------------------------------------------------TC--------TCTCTCTCTC-------TCTC-------------------------------------------------T-----------------------------------------------------------------------------CTC--T---------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCTC-----------------------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC----------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCT-------------CTCTCTCTCTCTCTCT-CTCT-------------------------------CTCT-CTCTGT----------CTC------------TCTCTGTCTGTCTGTCTCTCT------------GTCTC----TCTCT--CTCTCT--------------CTG--TCCCTCACTCTCT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC-CTCTTTACCTCTCGCGCTCTCACGCT----------------CTCTCTCGCTCCGACAAGATCTGCGAGGG
droFic1 scf7180000452868:444-640 + TTCTTTCTTTC----------------------------------------------------------------------TT--------TCCTTCTTTC-------CTTC-------------------------------------------------C-----------------------------------------------------------------------------TTC--C---------------------------------------------------------------------------------------------------------------------TTCTTTCTTTCTTTC-----------------------------------------TTTCTTTCTTTCTTTCTCTCT--------------------------CT-----------------------------------------------------------------------------CTCTTCCT-------T----CCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTCTCT-------------CTCTCTCTTCCTTCCT-TTCT-------------------------------TTCT-TTCTT--------------------------CCTTCCTTT--------------------------------------------------------CT------------TTCCTTC-TTTCTCTCTGTCTGGCTGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------------TTTT--CTTTCT-----------------
droEle1 scf7180000491008:2858874-2859121 - ACACACAC---------------------------------------------------------------------------AC------ACACAATTAC-------ATCCAACC--GAAACACACACACACACTCACACAGAC---------------------------ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCTCAATTGAATATGAAAAATCCCTTCCGTTCTGTTGTCATATATGCTGTTTCCGGTTTCCGCTAACCGCAACTCAAACGTCGTTGTCGTTGTCGTTGTCGTTGTCGTTGTCGTCGTCGTCGTCATCACATTTTGGTTAGGATTTTTCTTTTCGTTTTCCCCCCTTT---------------T----CTT----------------TTTT--TTTCCT-----------------
droRho1 scf7180000779876:91697-91944 + AACACACACTC----------------------------------------------------------------------AC--------ACACATGTAC-------ACGTAA-G--GATACTCT-----CCACACACTCACACAGTGGCAGCTAC-------------------ATCCTTACA-ATC--------------CGCTTGCGTCAAATATTTTGTTGGCCCCGG---------------GGCAAT---------TGTTGTTGCTCCTCGCTGACATGCGAATAATGCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGGGATTTTTGCTCCAGCCGCAAAAAGGACTTGCTTCCGCTCTCTC-TCTCTTTCTCTC-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCCACTTTTCACTCTCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------C----CTT----------------CTCC--CTCTCT-----------------
droBia1 scf7180000301925:7474-7713 - TTGATTCTACA----------------------------------------------------------------------AT--------TTTCTCGCCC-------TTTT--------------------------------------------------------------------------------------------------------------------------TACCATTATAT---TGG------------TCTCACTTTCCAATTTTTTTGTGCGCACATCTCACTTGC-------ACTGCCCTTTCTC-----------TCTCTCTCTCACTC-CTCTC-----------------------------------------------------------------TCTCTCTC--------------------------------TCTCTCTC-TCTCTC------------------------------------------------------------------TCT---------------------------------------------------------------CTCTCT-C---------------------------------------------------------T--CTCTCTCT----C--------------TCTCTCTCT------------CTCTCTCTCTCTCTCTCCTCTTCTCTCTCTC---CTCTTTCTCTCT--CTC---CTCTGTCTCTCT-GTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-T----------------------CTC----------------CCTC--CTCTCT-----------------
droTak1 scf7180000415873:386256-386509 + TTCCATTTTCC---------------ATTGATGGTTAAGCGAACGGTC------------------------------TAC--A--TATACATACATACATACG------------------------GACCAACGCACACATGCAGGCACAT-----------------------------GTTTAGTCGTGTTTACAT-------------A--------GCA---------------------------------------------------------------AAGCGCGCACGA--AACGGGG-----C------CTTTCG--------TAACCC---------------------TCGCTTCTCACGCTG-----------------------------------------TCTCCCTC-------------------------------------------------------------------------------------------------------------------------T-----------TTCTCCC------------------------------CCACCCCCAC-------------TTGCTAACT-CACTCTCTCTCTCTCTCTCTACTCTCTCTCT--CTCTCT-CT--CTCTCTCTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------T----CTG----------------TCTC--TCTCTC-----------------
droEug1 scf7180000409183:1026509-1026724 + CATGTATTTGG-C---------------------------------------------------------ACTTAACACAC--TTCTAC--CCACTAACACACA---C-----------------T----ACCACACACAAAAATACAACCACCCACTCGGCT----------------------------------------------------------------------T-----TTGATTTCG---------------C----------CTCTTACT-------------TTGGCT---------------TTGTTC------------------------------------------------------------------------------------------------------------TCGCCC-------------------------------------------------------------------------------------------------------TCGCCCTCTCCT-TCCCTCT----------------------------------------------------C-TC----T------------------------------------CTCTCTCTCTCT-CT--CTCTCTCTCTCTCTCTCTCTATCTCTCT--------------------------------CTCTT----TCCGT------------------CTTTATAGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-CCT---------------C----TCT----------------T-TC--TATTGT-----------------
dm3 chrUextra:28818368-28818603 + CTCTTCTCTCT----------------------------------------------------------------------TC--------TCTCTTCTCT-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTCTCTTCTCTCTTCGCTCTTCGCTCTTCGCTCTTCGCTC-----------------------------------------------------------------------------------------------------------------------------------------TTCTCT-------------CTTCTCTCTTCTCTCTTCT-CTCTTCTCTCTTCT-------------CTCT-TCTCTCTTCTC---TC-----------------------TT------C--TCTCTTCT----------CTC------------TTCTCTCTTCTGTCT------T--CTCTCTTC-TCTCT----TCTCT--CTT-----------CTCT--CTT--CTCTCTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------CTTC--TCTCTT-----------------
droSim2 x:15621964-15622140 - dsi_18338 ACGAGACGGCGTCGCTCTCCTCGGCGGACAACGATCCCGAGGATAGCCAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------CATTATTGCCAGCGTCCAGCAACCACATAGAACACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAAACCCACACCAC-ACCACACCGCACACATGCTTCCCCCAATCCTCCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACTCCTCTCTGCTCTCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:344337-344513 - ACCAGACGGCGTCGCTCTCCTCGGCGGACAACGATCCCGAGGATAGCCAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------CATTATTGCCAGCGTCCAGCAACCACATAGAACACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAAACCCACACCAC-ACCACACCGCACACATGCTTCCCCCAATCCTCCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACTCCTCTCTGCTCTCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:5647245-5647428 + TTTCTTGTTAA----------------------------------------------------------------------TT--------TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------TATGCGGTCTTTACCTTCTACCTGTTCTCTTTCTTTTTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT--------C-AT----T--------------------------------CTCTTTCACTTTC-----T--CTTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCA------------CTCACACTCACACTCACTTTTTAACG------------------T---------------------------------------------------------------------ACCTAGTACACCTCTTTACTCTTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATGG--GAACCG-----------------
droEre2 scaffold_4784:18912350-18912573 - TCGTTCTATTT-C--------------------------------------------------------------------TC--------TCTCTCTTTC-------TCTC-------------------------------------------------CC----------------------------------------------------------------------T-----CTCTTTC---------------TCT----------TTCTCTTTCTCTTTCT-CTTTC------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCT------------------------------------------------------------------------------------------------------------------T----TCTCACTCTCTCTCTCGCTCTCTCTCTCTCTCTCT-------------CTCTCTCTCTCTCTCT-CTCT-------------------------------CTCT-CTCTCT----------CTC------------TCTCTCTCTCTCTCTCTCTCT------------CTGTC----TCCCT--CTCTCT--------------GTC--TCCCTCTCTCTTT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC-CTT---------------C----TCT----------------CTGT--CTCCCT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACGAGACCGCCTCCCTCTCATCTGCCGACAATGATCCCGAGGATAGTCAGGT----ATACT-------ACACACAACACAC--TCAAAC--ACACACGCATACA---C-----------------A---ACTCACACACACACACACGCGCAC--ACTTTGCT---------------------------CTA----------------------------------------------------------------------------------------TTTTTTCCT-CTCTC-------------ATT---TTCT----------------------------------CTTCCTCTCTGATCTCGTTCTATTGTTGCTCGCTACTCGCTGCTCGTTACTCGCTACTCGTTACACTTTGCTTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCC--------C-AC----T--------------------------------CTCTTCCTCTCTC-----T--CTCTCTCTTT--C--------------CCTTTCTCT------------CT--------------------------------------------------------CTCTCTC-TTTCTTTCTCTTTG---ATCTCGTTCTATTGTTACTCGCTACTCGCTGATTCAGCACTCCTCTCTGCTCTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGACTCGGTCTTCGAGGG--CGTGCT-----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTC-----T--CTCTCTCTTT--C--------------CCTT...............................................................................................................................................................................................................................................................................................................................................................................................2180.131000000000000001000000000000000000000000000000000000000000000000
droMoj3
TGCTTTAC---------------------------------------------------------------------------AC------AAGAAACTGC---GCAT-----TCC--CATACACACACACGTACGCACGCATGC---------------------------GTTTG--------------------------TCTTAATATCT--------GTCTGTCTCCCT-----GTCTA---------TACCACAGTCT----------GTCTCTTCGGTTTTCT-CTCTC------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCC--------------------------CT-----------------------------------------------------------------------------CTCT-----------TTCTCTC------------------------------TCGCTCTCAC-------------TCCCTCTCT-CTGT-------------------------------C-----T--CTCTCTCTTT--C--------------TCTTTCTCT------------CTCTCTCTCGCTCTCACTCCTTCTCT------------------CT--GTC--TGTCTGTCTCTCT-CACT----------------------------------------------CTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTT---------------C----TCT----------------CTCT--CTCTCT-----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATGAGACAGCTTCGCTTTCATCCGCCGATAATGATCCCGAGGATAGTCAGGT----ATGCTCCCATGCA---------CAC--A--CACACACACACACACACAG-ACATAC---ACACACACACACACACACACACACACAGAC---------------------------ATACA----------------------CACAC---------A--------CAC---------------------------------------------------------------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACATACACTTACACAAATACACTTACACAAATACACATACACCTTTCTTT-------------TTCGTTTCGTTTTTCGTTT-CGTTGCTTTCGTCT-------------CGTTTTCTCTATTCGAAACTG-------------------------------TTCT-TGTTCT----------CGC------------TACTCGCTACTCGCTCGTTCT------------G-----------------------------------------------------------------------------------------------------ATTTAGCACTCCTCTCTGCTCTCACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGACTCGGTCTTCGAAGG--CGTCCT-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................TCCGCCGATAATGATCCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droWil2
TTCGTTTCATC-----------TGATGGCAACAAAG-----------CAGCTGAACAACCC-------TCACCCCACACAC--ACACACACTCACACACACACA------------------------CACTCACACACACACACAGGAACACCCACTC-----------------------GTTTAGCCTTGCTTG--------------CTG--------ATTAAGT----------------------------------------------------------------------A--ATCAAAG-----T------ATTTGG---------------------------------------------------------------------CAGCTAATTTATCGCCACTT---------------------------------------------------------------------------------------------------------------------------TACCCCTTTCTC-TCTCTCT----------------------------------------------------C-TC----T--------------------------------CTCTCT----CTCTCT-CT--CTCTCTCTCTCTCTCTCTCTGTATCTCT--------------------------------CTCTT----TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------T----TTA----------------GACT--TTCTAT-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ATACATCTCTC----------------------------------------------------------------------TC--------TCTCTCCCAC-------TCTT-------------------------------------------------C-GTCTC------------------------------------------------------------------TCCCTCTATCTC---------------TCT----------CTCTCTATCTATCTAT-CTCTCCCTCAC-------TCT---CTTTCTC-----TTT----CTCTCTCTCACTC-CTCTC-----------------------------------------------------------------TCTCTCTC--------------------------------ACTCTCTC-TCACTC------------------------------------------------------------------TCA---------------------------------------------------------------CTCTCT-CTCTCACTCTCTCT------------------------------CTCTCTCTC--T-CTCTTA----------C--------------TCTCTCTCT------------------------CTTAC----TCTCT--CTCTCACTCTTACTCTCTCTCT-----------------CTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TCT---------------C----TCT----------------CTCT--CTCACT-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACTCTCTCTCT-C--------------------------------------------------------------------AC--------TCTCTCTCAC-------TCTC-------------------------------------------------TC----------------------------------------------------------------------T-----CTCATTCTC---------------T----------CTCTCACT-------------CTCTCTC-------ACT---CTTTCTC-----TCTCTCTCTCTCTCTCACTCTTTCTC-----------------------------------------------------------------TCTCTC----------------------------------TCTCTCTC----------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCTCT-----------CT--CTCTCTCTCT-CTCT-------------------------------C-----T--CTCACTCTTT--C--------------TCTCTCTCT------------CTCTCTCTCTCTCTCAC----T--------------CTTTCTCTCT--CTC--ACTCTTTCTCTCT-CTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ACT---------------C----TCT----------------CACT--CTCACT-----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTCTGTCTCTC----------------------------------------------------------------------TG--------TCTCTCTGTC-------TCTC-------------------------------------------------T-----------------------------------------------------------------------------GTC--T---------------------------------------------------------------------------------------------------------------------CTCTGTCTCTCTGTC-----------------------------------------TCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTC----------------------------------------------------------------------------------------------------------------------TCTCTGTCTCTCTGT-------------CTCTCTGTCTCTCTGT-CTCT-------------------------------CTGT-CTCTCT----------GTC------------TCTCTGTCTCTCTGTCTCTCT------------GTCTC----TCTGT--CTCTCT--------------GTC--TCTCTGTCTCTCT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-CTT--------------------GCTC--------------AGTCT--CAGTCT-----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAAACACACTC----------------------------------------------------------------------AC--------ATACAGAGACACAGGAC-----------------------ACACACACACACACATTTATGAGGC-----T------GAGTGTGTGTGTTTGCGTATC--------------CTTGAGCGTCA--------GTTGGGCGCCGG-----GCATG---------TTGCATGAGTT----------GTCGTTGACGCGTTGA-----C-------------ATT---TTTC----------------------------------TTCCCTGCCTGCTGAAGTCCTGTT-----------------------------------------GCCCCTCAATACCCACACACT--------------------------C-------GCACATACTCCCCACTCT-CT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTA-----T--ATATTTT-----T--------------TTACAGTTT------------TTTCGTGTTTGCCTGAC----T--------------TATGCAATCG--TTA--GCAATCCTTTTC-TTTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCT---------------C----CTC----------------GACT--TCCTTC-----------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCTCTCTCTC----------------------------------------------------------------------TC--------TCTCTCTCTC-------TCTC-------------------------------------------------T-----------------------------------------------------------------------------CTC--T---------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCTC-----------------------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC----------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCT-------------CTCTCTCTCTCTCTCT-CTCT-------------------------------CTCT-CTCTGT----------CTC------------TCTCTGTCTGTCTGTCTCTCT------------GTCTC----TCTCT--CTCTCT--------------CTG--TCCCTCACTCTCT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC-CTCTTTACCTCTCGCGCTCTCACGCT----------------CTCTCTCGCTCCGACAAGATCTGCGAGGGSizeHit CountTotal NormTotal
No Reads
droFic1
TTCTTTCTTTC----------------------------------------------------------------------TT--------TCCTTCTTTC-------CTTC-------------------------------------------------C-----------------------------------------------------------------------------TTC--C---------------------------------------------------------------------------------------------------------------------TTCTTTCTTTCTTTC-----------------------------------------TTTCTTTCTTTCTTTCTCTCT--------------------------CT-----------------------------------------------------------------------------CTCTTCCT-------T----CCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTCTCT-------------CTCTCTCTTCCTTCCT-TTCT-------------------------------TTCT-TTCTT--------------------------CCTTCCTTT--------------------------------------------------------CT------------TTCCTTC-TTTCTCTCTGTCTGGCTGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------------TTTT--CTTTCT-----------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACACACAC---------------------------------------------------------------------------AC------ACACAATTAC-------ATCCAACC--GAAACACACACACACACTCACACAGAC---------------------------ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCTCAATTGAATATGAAAAATCCCTTCCGTTCTGTTGTCATATATGCTGTTTCCGGTTTCCGCTAACCGCAACTCAAACGTCGTTGTCGTTGTCGTTGTCGTTGTCGTTGTCGTCGTCGTCGTCATCACATTTTGGTTAGGATTTTTCTTTTCGTTTTCCCCCCTTT---------------T----CTT----------------TTTT--TTTCCT-----------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACACACACTC----------------------------------------------------------------------AC--------ACACATGTAC-------ACGTAA-G--GATACTCT-----CCACACACTCACACAGTGGCAGCTAC-------------------ATCCTTACA-ATC--------------CGCTTGCGTCAAATATTTTGTTGGCCCCGG---------------GGCAAT---------TGTTGTTGCTCCTCGCTGACATGCGAATAATGCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGGGATTTTTGCTCCAGCCGCAAAAAGGACTTGCTTCCGCTCTCTC-TCTCTTTCTCTC-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCCACTTTTCACTCTCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------C----CTT----------------CTCC--CTCTCT-----------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGATTCTACA----------------------------------------------------------------------AT--------TTTCTCGCCC-------TTTT--------------------------------------------------------------------------------------------------------------------------TACCATTATAT---TGG------------TCTCACTTTCCAATTTTTTTGTGCGCACATCTCACTTGC-------ACTGCCCTTTCTC-----------TCTCTCTCTCACTC-CTCTC-----------------------------------------------------------------TCTCTCTC--------------------------------TCTCTCTC-TCTCTC------------------------------------------------------------------TCT---------------------------------------------------------------CTCTCT-C---------------------------------------------------------T--CTCTCTCT----C--------------TCTCTCTCT------------CTCTCTCTCTCTCTCTCCTCTTCTCTCTCTC---CTCTTTCTCTCT--CTC---CTCTGTCTCTCT-GTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-T----------------------CTC----------------CCTC--CTCTCT-----------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTCCATTTTCC---------------ATTGATGGTTAAGCGAACGGTC------------------------------TAC--A--TATACATACATACATACG------------------------GACCAACGCACACATGCAGGCACAT-----------------------------GTTTAGTCGTGTTTACAT-------------A--------GCA---------------------------------------------------------------AAGCGCGCACGA--AACGGGG-----C------CTTTCG--------TAACCC---------------------TCGCTTCTCACGCTG-----------------------------------------TCTCCCTC-------------------------------------------------------------------------------------------------------------------------T-----------TTCTCCC------------------------------CCACCCCCAC-------------TTGCTAACT-CACTCTCTCTCTCTCTCTCTACTCTCTCTCT--CTCTCT-CT--CTCTCTCTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------T----CTG----------------TCTC--TCTCTC-----------------SizeHit CountTotal NormTotal
No Reads
droEug1
CATGTATTTGG-C---------------------------------------------------------ACTTAACACAC--TTCTAC--CCACTAACACACA---C-----------------T----ACCACACACAAAAATACAACCACCCACTCGGCT----------------------------------------------------------------------T-----TTGATTTCG---------------C----------CTCTTACT-------------TTGGCT---------------TTGTTC------------------------------------------------------------------------------------------------------------TCGCCC-------------------------------------------------------------------------------------------------------TCGCCCTCTCCT-TCCCTCT----------------------------------------------------C-TC----T------------------------------------CTCTCTCTCTCT-CT--CTCTCTCTCTCTCTCTCTCTATCTCTCT--------------------------------CTCTT----TCCGT------------------CTTTATAGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-CCT---------------C----TCT----------------T-TC--TATTGT-----------------SizeHit CountTotal NormTotal
No Reads
dm3
CTCTTCTCTCT----------------------------------------------------------------------TC--------TCTCTTCTCT-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTCTCTTCTCTCTTCGCTCTTCGCTCTTCGCTCTTCGCTC-----------------------------------------------------------------------------------------------------------------------------------------TTCTCT-------------CTTCTCTCTTCTCTCTTCT-CTCTTCTCTCTTCT-------------CTCT-TCTCTCTTCTC---TC-----------------------TT------C--TCTCTTCT----------CTC------------TTCTCTCTTCTGTCT------T--CTCTCTTC-TCTCT----TCTCT--CTT-----------CTCT--CTT--CTCTCTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------CTTC--TCTCTT-----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................T-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGTCT------T--CTCTCTT....................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------.............................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------C............................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TC..............................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT-------------CTCT-TCTCTCTTCTC---TC-----------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTCTCT-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------CT...........................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT--CTT-----------CTCT--CTT--CTCTCTTC.................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT----TCTCT--CTT-----------CTCT--CTT--.........................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTCTTCTCTCT----------------------------------------------------------------------TC--------TCTCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------CTTC--TCTCT..................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CT-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CTT--CTCTCTTCTCTC-----------------------------------------------------TTCT....................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CTCTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTT---------------C----TCT----------------CTTC--TCTCT..................21200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------TT------C--TCTCTTCT----------CTC------------TTCTCTC............................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CTCTTCTCT-------CTTC-------------------------------------------------T-CTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CTT------------------------------------------------------------------CTCTCT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CT-----------------------T--------------------------------------------------------------------------------------------------CTCTCTTCTCTCTTCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCT-CTCTTCTCTCTTCT-------------CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCTCT--CTT-----------CTCT--CTT--CTCT.....................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........T----------------------------------------------------------------------TC--------TCTCTTCTCT-------CTTC-------------------------------------------------T-CTCTT------------------------------------------------------------------CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CTT--CTCTCTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CT.....................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT------T--CTCTCTTC-TCTCT----TCTCT--CTT-----------CTC.................................................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--CTCTCTTCTCTC-----------------------------------------------------TTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-.......................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT--CTT-----------CTCT--CTT--CTCTCTTCT................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCT-CTCTTCTCTCTTCT-------------CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-----------CTCT--CTT--CTCTCTTCTCT..............................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTC---TC-----------------------TT------C--TCTCTTCT----------CTC------------...................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTC---TC-----------------------TT------C--TCTCTTCT----------..................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGAGACGGCGTCGCTCTCCTCGGCGGACAACGATCCCGAGGATAGCCAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------CATTATTGCCAGCGTCCAGCAACCACATAGAACACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAAACCCACACCAC-ACCACACCGCACACATGCTTCCCCCAATCCTCCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACTCCTCTCTGCTCTCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACTCCG...............................................................................................................................................................................................................................................2211.00100100000000000000
...........................ACAACGATCCCGAGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC.....................................................................................................................................................................................................................................................2011.00110000000000000000
...AGACGGCGTCGCTCTCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..GAGACGGCGTCGCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15150.13200000000011000000
droSec2
ACCAGACGGCGTCGCTCTCCTCGGCGGACAACGATCCCGAGGATAGCCAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------CATTATTGCCAGCGTCCAGCAACCACATAGAACACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAAACCCACACCAC-ACCACACCGCACACATGCTTCCCCCAATCCTCCCGGACCTCTG-----------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACTCCTCTCTGCTCTCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....GACGGCGTCGCTCTCCTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..............CTCTCCTCGGCGGACAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
TTTCTTGTTAA----------------------------------------------------------------------TT--------TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------TATGCGGTCTTTACCTTCTACCTGTTCTCTTTCTTTTTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT--------C-AT----T--------------------------------CTCTTTCACTTTC-----T--CTTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCA------------CTCACACTCACACTCACTTTTTAACG------------------T---------------------------------------------------------------------ACCTAGTACACCTCTTTACTCTTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATGG--GAACCG-----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCTCTCTCTCTCTCTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEre2
TCGTTCTATTT-C--------------------------------------------------------------------TC--------TCTCTCTTTC-------TCTC-------------------------------------------------CC----------------------------------------------------------------------T-----CTCTTTC---------------TCT----------TTCTCTTTCTCTTTCT-CTTTC------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCTCTCT------------------------------------------------------------------------------------------------------------------T----TCTCACTCTCTCTCTCGCTCTCTCTCTCTCTCTCT-------------CTCTCTCTCTCTCTCT-CTCT-------------------------------CTCT-CTCTCT----------CTC------------TCTCTCTCTCTCTCTCTCTCT------------CTGTC----TCCCT--CTCTCT--------------GTC--TCCCTCTCTCTTT-GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC-CTT---------------C----TCT----------------CTGT--CTCCCT-----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:54 PM