dvi_14126

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGACACTGAGGATGAGGATGGTGATGGTATTGATAAGAGTCCGCTTTTAGGTTTGTACCATAAACAACAACAACAACAACAACAACAAAGTGCACCCCCTCCACCCACAAATGGCTACAAGCGCATATACCACCTCCCCCCTTTTTTTGTAGTGTATTCAAAGTAGTTTGTCAAAATTAAAAAAGAAAAGAAATCGCACAATATCTAACACTTGTTGTATATAAACACACACACTTACACTTGCTAACTTG ************************************************(((((((((((.................................................)))).)))))))..................((((((((.((((.....((((....)))).....))))...))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060658 140_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060663 160_0-2h_embryos_total	V116 male body	SRR060667 160_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	M047 female body	M061 embryo
....................GTGGTGGTATTGACAAGAG....................................................................................................................................................................................................................	19	2	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
AGACACTGAGGATGAGGATGGT.....................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....ACTGAGAATGAGGATGGTGAT..................................................................................................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................AACAACAACAACAACAACAAC........................................................................................................................................................................	21	0	20	0.15	3	0	0	0	0	3	0	0	0	0	0	0
....................GTGTTGGTATTGACAAGA.....................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	1	0	0	0	0	0
......................GATGGTATTGAAAAGATCC..................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................AACAACAGCAACAAAGTGCA.............................................................................................................................................................	20	1	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................TGGCTTCAAGGGCATATAAC........................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0
.............................................................AAACAACAACAACAACAACAACAAC.....................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................CAACAACAACAACAACAAAGT................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...........................................................ATAAACAACAACAACAACAACAACA.......................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0

TCTGTGACTCCTACTCCTACCACTACCATAACTATTCTCAGGCGAAAATCCAAACATGGTATTTGTTGTTGTTGTTGTTGTTGTTGTTTCACGTGGGGGAGGTGGGTGTTTACCGATGTTCGCGTATATGGTGGAGGGGGGAAAAAAACATCACATAAGTTTCATCAAACAGTTTTAATTTTTTCTTTTCTTTAGCGTGTTATAGATTGTGAACAACATATATTTGTGTGTGTGAATGTGAACGATTGAAC ************************************************(((((((((((.................................................)))).)))))))..................((((((((.((((.....((((....)))).....))))...))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M027 male body	M047 female body	SRR060660 Argentina_ovaries_total	V053 head	SRR1106728 larvae	SRR060656 9x160_ovaries_total
...............................................................................................................................ACGGTAGAGGGGCGAAAAAA........................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0
.................................................................................................................................TGTGGAGGGGAGAAAAAA........................................................................................................	18	2	10	0.10	1	1	0	0	0	0	0	0
.........................................................................GTTGTTGTTGTTGTTTCA................................................................................................................................................................	18	0	20	0.10	2	0	0	0	2	0	0	0
..............................................................................................GGGGGAGATCGGAGTTTA...........................................................................................................................................	18	3	20	0.10	2	0	2	0	0	0	0	0
.........................................................................................TACGTGGTGGTGGTGGGTGTTT............................................................................................................................................	22	3	10	0.10	1	0	0	1	0	0	0	0
.........................................................................................................................................................GATATGTTGCATCAAACAGT..............................................................................	20	3	10	0.10	1	0	0	0	0	1	0	0
........................................GGCGATAATCCAAATATGG................................................................................................................................................................................................	19	2	16	0.06	1	0	0	0	0	0	1	0
.............................................................TTTGTTGTTGTTGTTGTT............................................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_13042:441925-442175 -	dvi_14126	AGACACTG------AGGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TA-----------------------------------------------------AACAACAACAACAACAACAACAACAAAGTGCACCCCCTCCACC---------------------------------------CA-CAAATGGCTACAAGCGC-----ATATACCACC---------TCCCCCCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTGTATTCAAAGTAG-----------------------------------------------------------------------------TTTGTCAAAAT-------------TAAAAAAGAAAAGAAAT---------------------CGCACAATATCTAACACTTGTTGTATATAAACACACACACT---TACACTTGCTAACTTG
droMoj3	scaffold_6359:1013323-1013532 +		AGACACTG------ATGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TAAACAAC--------------------------------------------AAAAACAACAACAACAACAACAAC-ACAAACTGCACCC----ACCCAAAAACAATAAT---------ATACAAGAAC---------------------------------AACA---AC--------------AACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTCT--------------------------------AACAAATGCACAAAACACTAAC---------------------------------------------------------------------------------------------------------------AA---ATGTATATAAAAA-----GCG---CACACTGTCTAACTTG
droGri2	scaffold_14853:4041376-4041645 +		AGACACTG------AGGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TAAACAACAACAACAACAAA------------------------C----A---------------------------ACAAAGTGCACCCCC-----------------AAGCAACAGCA-AC----------------AATGGCAACAACTACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTTATTTGTAGTGTATTCTACGTAGTT---------------------G----------TCCATTTTTTTTGCAAACATTTGC--TAACAAACCAAAAGAAAAACAAAAAAAAAAGAA-------------------------------GTTAAACAACAAAAACGC-CAAAAGTTAACA-TTATTGTATATAAACAC--------------------AACTTG
droWil2	scf2_1100000004909:11734564-11734801 +		CATTGCAA------CAACA-A-CATCAA-CAACAATATCAACTG---CAA----TATAATAACAACA-----ACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAA------TAG----------------------------------------------C---------A-GCAACAGCAA------CA-ACAACAACAACAATCTC-----GA--------TGATGATATTTATTATTTATTTTATAAAGATTTTTATGTAAGTTTTCATTTAT----------------------------TTA----------------------------------AAATACAACAAAATAAAAATAAAAAAACATTTCTACTTCTTGCCCTCTCAATCTCTCACTCAAACATTT---------------------------------------------------------------------------------------ACATTTGC-------------------------------------------------------------------------------------------------------------------------T---GT------------CT
dp5	3:16501478-16501602 +		AAAAAAAGTCAAAGCCAACAA-AAGAGGCCAGAG-------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TGG--------------------------------------------AGACCCAGCAAGACGC---A--TACAACAACAACAACAACAGCAACAAAAAGTACACCAACAACA---------------------------------------CG-AAAGTGGCGAAAGGTGC-----ACCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------CA
droPer2	scaffold_24:1415268-1415437 -		TGAAACAA------CAACA-A-ATTCAA-TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAA-AG---------------ATAAAACA---------------GC----AACAGAAACAGCAACAGCAACAGCAACGACAAAACTC-----------------------------------------------AACTAA-AAAGTAACCAAAAAGTCA--GCAGAAAGAACC---------TCCTCCCCTCT----------------------------------------------ATCGAAACGGATAGAATA----------------------------------GAATATAAAAAAACAAAAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AA------------GA
droAna3	scaffold_13417:199400-199569 +		CGAGGAGG------AGCAGGA-GGATGGCTGGTGGTATTGATAG---AAA----AAAAAC-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGCTTTC-C-----TAGGTTTGTACCA-CACACACA------------------C------ACACACACTCACACAC---ATACAGAACAACAACAACAACAACAT-AAACACTG----------------------------------------------CACTCA-AAAATATCCAAAAATTAA--AAAAAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AC------------CT
droBip1	scf7180000395751:383182-383358 -		GTAACAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACAGCAACAACAACCACAATCTGCAAAT----ACTG---------------------------------------CA-AAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAAGGTCGTTCGTTTCGAATTAATAGGATATTCATA-CAAATCATA--GAAAATCGCTTTAACTAAAC----------------AAT-------------TAAAAAACAAAACAAAAAATAAAGTT------------------------------------ATATAACTAAACAA----------GTGTCTTATTAA
droKik1	scf7180000302469:615452-615639 -		ACACCAAC------AACA--T-CAACAT-CAACAACACCAACAC---CAA-----------------------CACTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAG------CAACACCAACAGC----------------------------------------------A-ACACCAACAACACCAGCA-ACACCAACACCAACACCACACCAACA---AC--------------------------------------------------------------------------------------------------AC----------------------------------------------------------------------------------CAACAAACACCAACAACACCAGTTACCAGTGCGTGGAATGTGTTG---------------------A----------AAAATT-----------------------------------------TGATTCAAAGGAACTTTTCG---------------------------------------------------------------------------------------------ACATT
droFic1	scf7180000454077:1466279-1466390 -		AAGCACAA------CAGAT-A-TTGCAA-GT--------------------------------------AGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACA---------------------------------------------------------ACCACCACCACCGGCAACAGCAACAACAATTGC-------------------------------A-CCATCAGCAA------CA-GCAACAACAATTAGCAC-----CACCACCACC---------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CT------------CC
droEle1	scf7180000491249:2550226-2550439 +		AAATCCAA------ACCATGAAGGATCAACCGCAGCAACCCATG---GTG--AG-------------TC----GTCAATCGGTTTCGATTTTTCCCCTAAATGCCATTGACCTTTTCAG-------------------------------TTCTGCCC---CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTCAATTAGTTTTGATTTTCATTTCATTTTCCGTTTCAAGGCAGCCAAATG--CAAAA--CACAAAATACAAAATACAAAACACAGAGCAAACCCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGCTTGGC---CA------------TA
droRho1	scf7180000779900:520116-520257 +		AGCAGCAA------CAACA-A-CAACAA-CAACAACATCAAGTG---CAG------------CAACA-----ACAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----ATCAG------CAT----------------------------------------------CAGCAACAGCA-AC----------------ATCAGCAACAACAACATC-----AG--------CAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCTCAACCACCAACTCAACAACAGAAACCGTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CT------------CC
droBia1	scf7180000301760:177345-177461 +		GGCCGTCG------CCGATGA-GGATGGCTGGTGGTAGTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGGCTTTTTGTTCTAGGTTTGTACCCACA-AA---------------ACA---CAGGCACAC------CCAC----A---------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-----CC-----------------ACATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA------------------------------------------------------------------------------C---GA------------CT
droTak1	scf7180000415262:9017-9173 -		AGACACAC------CTAAG-A-CATAAGCCGCTATCATTCACCC----------------------------------------TTAATCCC---TTTAAGGACACTTGACGTGTGCACGACCAACAACAACAACAGCAACAGCAGCAGGATCTGGCACACCTCCGGCCAAGTCGAAATGGCCATGTCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC---------TGGCCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT
droEug1	scf7180000409061:268360-268563 -		CGACAACA------ACAGCAA-CAACAA-CAGCAACAACAACAA---C-------------------TA----GACGAACAACTACAACACTTACAACA----ACAA-----------------------------------------GGACCTGGGAA---------------AACAGGAGCATAGCTTAGCTTTGGGCTGCTGTTGGCATACTTAAAGTTCATAAAAAAGTCAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAAATTGCAATGCACACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGAACAACATACACACACACACA---CA------------CA
dm3	chrX:9080130-9080226 +		AAGCAACA------ACAACAA-CAACAA-CAACAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTATTTTTTTT---------------------AAGCAAA------------------------------------ACCAAAAACAAAATATAAAAAAAAAAAACGAAAAA------------------------------------------------------------------------------A---AA------------CC
droSim2	x:4514067-4514158 +		GGCTGTCG------CCGATGA-GGATGGCTGGTGGTATTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGACTTTT-----TAGGTTTGTACCCACA-AAAACAACAACACAAAA------------------------C----A---------------------------ACACAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_0:3734781-3734924 -		ATGACA--------CAGAATA-TTACTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAGCAAACTTCTTCC----TATC----------------------------AGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGACAATTGTTTGTTGTATCTTGCCACAGCGTTGAACTCAAACTCTG--AGCAGTTGC--TGA-------------------------AGAAACCGAAGAA------------------------------------------------------------------------------G---AA------------AA
droYak3	3L:11569271-11569417 -		AGCCAGTG------CAGCA---CAACAACTGCTCAT--TAGTGATCGGAATT-----------------ATCCCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACA-------CCAGC-------------AACAACA---------------CC----AACAGCAGCAACAACACCAACAGCA-----------------------------------------------GCAGCAACAACAACCACA-GCGGTGGCCACAACATCATGTCACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---CC------------TC
droEre2	scaffold_4690:2211320-2211444 +		GGCTGTCG------CCGATGA-GGATGGCTGGTGGTATTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGACTTTT-----TAGGTTTGTACCCACA-AA---------------ACAACACA---------------AC----A---------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-----CCAACAAATTGTATGTTCCATATCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTG------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGACACTG------AGGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TA-----------------------------------------------------AACAACAACAACAACAACAACAACAAAGTGCACCCCCTCCACC---------------------------------------CA-CAAATGGCTACAAGCGC-----ATATACCACC---------TCCCCCCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTGTATTCAAAGTAG-----------------------------------------------------------------------------TTTGTCAAAAT-------------TAAAAAAGAAAAGAAAT---------------------CGCACAATATCTAACACTTGTTGTATATAAACACACACACT---TACACTTGCTAACTTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
AGACACTG------AGGATGA-GGATGG-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................A-----------------------------------------------------AACAACAACAACAACAACAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................A-TA-----------------------------------------------------AACAACAACAACAACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGACACTG------ATGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TAAACAAC--------------------------------------------AAAAACAACAACAACAACAACAAC-ACAAACTGCACCC----ACCCAAAAACAATAAT---------ATACAAGAAC---------------------------------AACA---AC--------------AACTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTCT--------------------------------AACAAATGCACAAAACACTAAC---------------------------------------------------------------------------------------------------------------AA---ATGTATATAAAAA-----GCG---CACACTGTCTAACTTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................GATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GCG---CACACTGTCTAACTT.	19	1	1.00	1	1	0	0	0	0	0
.............................TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAAC-ACAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	1	0	0	0	0	0

droGri2

AGACACTG------AGGATGA-GGATGG-TGATGGTATTGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCCGCTT-T-----TAGGTTTGTACCA-TAAACAACAACAACAACAAA------------------------C----A---------------------------ACAAAGTGCACCCCC-----------------AAGCAACAGCA-AC----------------AATGGCAACAACTACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTTATTTGTAGTGTATTCTACGTAGTT---------------------G----------TCCATTTTTTTTGCAAACATTTGC--TAACAAACCAAAAGAAAAACAAAAAAAAAAGAA-------------------------------GTTAAACAACAAAAACGC-CAAAAGTTAACA-TTATTGTATATAAACAC--------------------AACTTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................A-TAAACAACAACAACAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
........................................................................................................................................................................................................................................................................CAACAACAACAACAAA------------------------C----A---------------------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0

droWil2

CATTGCAA------CAACA-A-CATCAA-CAACAATATCAACTG---CAA----TATAATAACAACA-----ACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAA------TAG----------------------------------------------C---------A-GCAACAGCAA------CA-ACAACAACAACAATCTC-----GA--------TGATGATATTTATTATTTATTTTATAAAGATTTTTATGTAAGTTTTCATTTAT----------------------------TTA----------------------------------AAATACAACAAAATAAAAATAAAAAAACATTTCTACTTCTTGCCCTCTCAATCTCTCACTCAAACATTT---------------------------------------------------------------------------------------ACATTTGC-------------------------------------------------------------------------------------------------------------------------T---GT------------CT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................CAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAA------TAG----------------------------------------------C---------A-GCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	1	0	0
................................................................ACA-----ACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAA------TAG----------------------------------------------C---------A-GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	1	0
..................................................................A-----ACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAA------TAG----------------------------------------------C---------A-GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0

dp5

AAAAAAAGTCAAAGCCAACAA-AAGAGGCCAGAG-------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TGG--------------------------------------------AGACCCAGCAAGACGC---A--TACAACAACAACAACAACAGCAACAAAAAGTACACCAACAACA---------------------------------------CG-AAAGTGGCGAAAGGTGC-----ACCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------CA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................AAGAGGCCAGAG-------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TGG--------------------------------------------AGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAAGTACACCAACAACA---------------------------------------CG-AAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGAAACAA------CAACA-A-ATTCAA-TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAA-AG---------------ATAAAACA---------------GC----AACAGAAACAGCAACAGCAACAGCAACGACAAAACTC-----------------------------------------------AACTAA-AAAGTAACCAAAAAGTCA--GCAGAAAGAACC---------TCCTCCCCTCT----------------------------------------------ATCGAAACGGATAGAATA----------------------------------GAATATAAAAAAACAAAAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AA------------GA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................CA--GCAGAAAGAACC---------TCCTCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTCA--GCAGAAAGAACC---------TCCTCCCTCT....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTCA--GCAGAAAGAACC---------TCCTCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAACCAAAAAGTCA--GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAAAGTCA--GCAGAAAGAACC---------T.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAAAAGTCA--GCAGAAAGAACC---------TC............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACAGAAACAGCAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................CAGAAACAGCAACAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GC----AACAGAAACAGCAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droAna3

CGAGGAGG------AGCAGGA-GGATGGCTGGTGGTATTGATAG---AAA----AAAAAC-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGCTTTC-C-----TAGGTTTGTACCA-CACACACA------------------C------ACACACACTCACACAC---ATACAGAACAACAACAACAACAACAT-AAACACTG----------------------------------------------CACTCA-AAAATATCCAAAAATTAA--AAAAAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AC------------CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................ATAG---AAA----AAAAAC-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGCTTTC-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

GTAACAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACAGCAACAACAACCACAATCTGCAAAT----ACTG---------------------------------------CA-AAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAAGGTCGTTCGTTTCGAATTAATAGGATATTCATA-CAAATCATA--GAAAATCGCTTTAACTAAAC----------------AAT-------------TAAAAAACAAAACAAAAAATAAAGTT------------------------------------ATATAACTAAACAA----------GTGTCTTATTAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACACCAAC------AACA--T-CAACAT-CAACAACACCAACAC---CAA-----------------------CACTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AACAG------CAACACCAACAGC----------------------------------------------A-ACACCAACAACACCAGCA-ACACCAACACCAACACCACACCAACA---AC--------------------------------------------------------------------------------------------------AC----------------------------------------------------------------------------------CAACAAACACCAACAACACCAGTTACCAGTGCGTGGAATGTGTTG---------------------A----------AAAATT-----------------------------------------TGATTCAAAGGAACTTTTCG---------------------------------------------------------------------------------------------ACATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGCACAA------CAGAT-A-TTGCAA-GT--------------------------------------AGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACA---------------------------------------------------------ACCACCACCACCGGCAACAGCAACAACAATTGC-------------------------------A-CCATCAGCAA------CA-GCAACAACAATTAGCAC-----CACCACCACC---------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CT------------CC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATCCAA------ACCATGAAGGATCAACCGCAGCAACCCATG---GTG--AG-------------TC----GTCAATCGGTTTCGATTTTTCCCCTAAATGCCATTGACCTTTTCAG-------------------------------TTCTGCCC---CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTCAATTAGTTTTGATTTTCATTTCATTTTCCGTTTCAAGGCAGCCAAATG--CAAAA--CACAAAATACAAAATACAAAACACAGAGCAAACCCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGCTTGGC---CA------------TA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAGCAA------CAACA-A-CAACAA-CAACAACATCAAGTG---CAG------------CAACA-----ACAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----ATCAG------CAT----------------------------------------------CAGCAACAGCA-AC----------------ATCAGCAACAACAACATC-----AG--------CAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCTCAACCACCAACTCAACAACAGAAACCGTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CT------------CC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCCGTCG------CCGATGA-GGATGGCTGGTGGTAGTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGGCTTTTTGTTCTAGGTTTGTACCCACA-AA---------------ACA---CAGGCACAC------CCAC----A---------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-----CC-----------------ACATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA------------------------------------------------------------------------------C---GA------------CT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGACACAC------CTAAG-A-CATAAGCCGCTATCATTCACCC----------------------------------------TTAATCCC---TTTAAGGACACTTGACGTGTGCACGACCAACAACAACAACAGCAACAGCAGCAGGATCTGGCACACCTCCGGCCAAGTCGAAATGGCCATGTCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC---------TGGCCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGACAACA------ACAGCAA-CAACAA-CAGCAACAACAACAA---C-------------------TA----GACGAACAACTACAACACTTACAACA----ACAA-----------------------------------------GGACCTGGGAA---------------AACAGGAGCATAGCTTAGCTTTGGGCTGCTGTTGGCATACTTAAAGTTCATAAAAAAGTCAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAAATTGCAATGCACACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGAACAACATACACACACACACA---CA------------CA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGCAACA------ACAACAA-CAACAA-CAACAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTATTTTTTTT---------------------AAGCAAA------------------------------------ACCAAAAACAAAATATAAAAAAAAAAAACGAAAAA------------------------------------------------------------------------------A---AA------------CC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................AACAA-CAACAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGT..............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................ACAA-CAACAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTG...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT---------------------AAGCAAA------------------------------------ACCAAAAA.............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AACA------ACAACAA-CAACAA-CAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................A-CAACAA-CAACAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAAAAAAAAAAAAC........................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACGAAAAA------------------------------------------------------------------------------A---AA------------..	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGCTGTCG------CCGATGA-GGATGGCTGGTGGTATTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGACTTTT-----TAGGTTTGTACCCACA-AAAACAACAACACAAAA------------------------C----A---------------------------ACACAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................TTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGACTTTT-----TAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.GCTGTCG------CCGATGA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

ATGACA--------CAGAATA-TTACTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAGCAAACTTCTTCC----TATC----------------------------AGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGACAATTGTTTGTTGTATCTTGCCACAGCGTTGAACTCAAACTCTG--AGCAGTTGC--TGA-------------------------AGAAACCGAAGAA------------------------------------------------------------------------------G---AA------------AA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

AGCCAGTG------CAGCA---CAACAACTGCTCAT--TAGTGATCGGAATT-----------------ATCCCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACA-------CCAGC-------------AACAACA---------------CC----AACAGCAGCAACAACACCAACAGCA-----------------------------------------------GCAGCAACAACAACCACA-GCGGTGGCCACAACATCATGTCACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---CC------------TC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................CAT--TAGTGATCGGAATT-----------------ATCCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACCACA-GCGGTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ACA-------CCAGC-------------AACAACA---------------CC----AACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAACACCAACAGCA-----------------------------------------------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCA-----------------------------------------------GCAGCAACAACAACCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GGCTGTCG------CCGATGA-GGATGGCTGGTGGTATTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCGACTTTT-----TAGGTTTGTACCCACA-AA---------------ACAACACA---------------AC----A---------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-----CCAACAAATTGTATGTTCCATATCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTG------------CA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....GTCG------CCGATGA-GGATGGCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................GGTGGTATTGATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0

dvi_14126

scaffold_13042:441975-442125 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.5	-13.08