ID:

dvi_14086

 Coordinate:

scaffold_13036:578714-578877 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.9

Flybase annnotation

CDS [Dvir\GJ14636-cds]; exon [dvir_GLEANR_14716:2]; exon [dvir_GLEANR_14716:1]; CDS [Dvir\GJ14636-cds]; intron [Dvir\GJ14636-in]

Repeatable elements

NameClassFamilyStrand
Ulysses_LTRLTRGypsy+
PENELOPELINEPenelope+
Ulysses_I-intLTRGypsy-
mature
  1. scaffold_13036:549286-549306 -
  2. scaffold_13036:552952-552972 +
  3. dvi_14086  scaffold_13036:578856-578876 -
star
  1. scaffold_13036:549253-549272 -
  2. scaffold_13036:552986-553005 +
  3. dvi_14086  scaffold_13036:578823-578842 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGAGGTCGCTGGAATTAAAATGAAAGGGTTGCTAGACACCAGAGCCTCGGTCAGCCTGCTGGGACAGTGGATATTAGTCGTTTGTTGGTTGAAGCTTTTATATGTGCATCATTTAAAATGCAGCCGATTGTCGCAGTTTTGTTCTTGTTGTAAAATTGTTGATTCATCAATGTTTTGTGTGTCGTTGCTTGTTACGAAACTGATTGTTTCTAGGTGGGCCGCGCGGCTGGCTCATCGGTTTCTCTTTGCTTCTGTGGCACACA
***************************************************((((((.((...((((((....))).)))....)).))))))............*************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR1106713
embryo_0-2h
 M061
embryo
 SRR1106712
embryo_0-2h
 SRR1106718
embryo_6-8h
 SRR060677
Argx9_ovaries_total
 SRR1106714
embryo_2-4h
 SRR1106720
embryo_8-10h
 SRR1106717
embryo_6-8h
 SRR1106730
embryo_16-30h
 SRR060673
9_ovaries_total
 SRR1106723
embryo_12-14h
 SRR060682
9x140_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060675
140x9_ovaries_total
 SRR1106719
embryo_8-10h
 SRR1106725
embryo_14-16h
 SRR1106722
embryo_10-12h
 SRR1106715
embryo_4-6h
 SRR1106716
embryo_4-6h
 SRR060688
160_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR1106721
embryo_10-12h
 SRR1106724
embryo_12-14h
 SRR1106729
mixed whole adult body
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060658
140_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 V053
head
 V116
male body		 SRR060680
 9xArg_testes_total
 M028
head
 SRR1106726
embryo_14-16h
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060660
Argentina_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
.....................TGAAAGGGTTGCTAGACACCAGAGCCT........................................................................................................................................................................................................................ 27 0 5 44.80 224 59 2 1 15 4 13 15 0 11 11 10 9 0 7 2 0 1 8 8 7 8 8 0 0 0 3 4 4 3 0 0 1 1 1 0 0 0 1 2 2 0 0 1 1 0 0 1 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAGCC......................................................................................................................................................................................................................... 26 0 5 8.20 41 5 9 7 0 5 0 0 0 0 0 0 0 0 1 2 0 2 0 0 1 0 0 1 1 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAGC.......................................................................................................................................................................................................................... 25 0 5 1.80 9 0 1 3 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAGCCC........................................................................................................................................................................................................................ 27 1 5 1.40 7 5 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTAAAGGGTTGCTAGACACCAGAGCCT........................................................................................................................................................................................................................ 27 1 5 1.20 6 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGACACCAGAGCCTCGGTCAG................................................................................................................................................................................................................. 21 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TCAGCCTGCTGGGACAGTGGA................................................................................................................................................................................................ 21 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTTTGCTTCTG......... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTGTAC.............. 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTTTGCTTCTGTG....... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTCGCTGGAATTAAAATGAAAGGGTT......................................................................................................................................................................................................................................... 26 0 3 0.67 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTGGTTGAAGCTTTTATATG............................................................................................................................................................... 20 0 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACGCCAGAGCCT........................................................................................................................................................................................................................ 27 1 5 0.60 3 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTAAAGGGTTGCTAGACACCAGAGCC......................................................................................................................................................................................................................... 26 1 5 0.60 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTGCTAGACACCAGAGCCTCGGTCA.................................................................................................................................................................................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTAGACACCAGAGCCTCGGTC................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TCGGTCAGCCTGCTGGGACAG.................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGCCACCAGAGCCT........................................................................................................................................................................................................................ 27 1 5 0.40 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAAGGGTTGCTAGACACCAGA............................................................................................................................................................................................................................ 21 0 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AAGGGTTGCTAGACACCAGAGCCT........................................................................................................................................................................................................................ 24 0 5 0.40 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CTCTTTGCTTCTGTGGCAC... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTTGAAGCTTTTATATGTG............................................................................................................................................................. 21 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTAGTCGTTTGTTGGTTGAAGC........................................................................................................................................................................ 22 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GGTCGTTTGTTGGTTGAAGCTC...................................................................................................................................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTCGCTGGAATTAAAATGAAAGGGT.......................................................................................................................................................................................................................................... 25 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGTTGGTTGAAGCTTTTATA................................................................................................................................................................. 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAGAATGAAAGGGTTGCTAGA................................................................................................................................................................................................................................... 21 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AGTCGTTTGTGGGTTGATGC........................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCATCAATGTTTTGTGTGTCG............................................................................... 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATGTTTTGTGTGTCGTTGCTT......................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAATTGTTGATTCATCAATGTT......................................................................................... 22 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTAGTCGTTTGTTGGTTG............................................................................................................................................................................ 18 0 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGTTGCTTGTTACGAAACTGA............................................................ 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AATTGTTGATTCATCAATGTT......................................................................................... 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTGCTAGACACCAAAGCCTCG...................................................................................................................................................................................................................... 21 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACAGTGGATGTTGGTCGTTTG................................................................................................................................................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GACAGTGGATATTAGTCGTCT.................................................................................................................................................................................... 21 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGATTCATCAATGTTTTGTGT................................................................................... 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATCAATGTTTTGTGTGTCG............................................................................... 19 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTGCTTGTTGCGAGACTGATT.......................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGCCTGCTGGGACGGTGGATA.............................................................................................................................................................................................. 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATTAGTCGTTTGTTGGTTGA........................................................................................................................................................................... 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAGTCT........................................................................................................................................................................................................................ 27 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATTTAAAATGCAGCCGATTGT.................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTAAGGGGTTGCTAGACGCCAGAGCCT........................................................................................................................................................................................................................ 27 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGCTGCTAGACACCAGAGCCG........................................................................................................................................................................................................................ 27 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAAAATGCAGCCGATTGTCGC................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATCATTTGAAATGCAGCCGAT....................................................................................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTAAAGGGTTGATAGACACCAGAGCCT........................................................................................................................................................................................................................ 27 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTCGACACCAGAGCCT........................................................................................................................................................................................................................ 27 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGACACCAGAG........................................................................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CATCATTTAAAATGCAGCCG......................................................................................................................................... 20 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAAGGGTTGCTAGACACCAGAGCCT........................................................................................................................................................................................................................ 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATTTAAAATGCAGCCGATTG..................................................................................................................................... 20 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGCAGTTTTGTTCTTGTTGTA............................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATGAAAGGGTTGCTAGACACCAGAGC.......................................................................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAGCCG........................................................................................................................................................................................................................ 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGACACCAGAGCC......................................................................................................................................................................................................................... 28 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAGAG........................................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGCAGCCGATTGTCGCAGTTT............................................................................................................................ 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AACGAAAGGGTTGCTAGACACCAGA............................................................................................................................................................................................................................ 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGTCGCAGTTTTGTTCTTGT................................................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CATCAAGGTTTTGTGTGTGGT.............................................................................. 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGTGTGTCGTTGCTTGTTACG................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACCCCAGAGC.......................................................................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGACACCAGAGCCT........................................................................................................................................................................................................................ 29 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAATGCAGCCGATTGTCGCA................................................................................................................................ 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTGCATCATTTAAAATGC.............................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGCTGCTAGACACCAGAGCC......................................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCAAAGCCT........................................................................................................................................................................................................................ 27 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCATTTAAAATGCAGCCGATT...................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CATTAAAATGAAAGGGTT......................................................................................................................................................................................................................................... 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTTGG............... 19 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCCGAGCC......................................................................................................................................................................................................................... 26 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGACACC............................................................................................................................................................................................................................... 22 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACAC................................................................................................................................................................................................................................ 19 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACACCCGAGCCT........................................................................................................................................................................................................................ 27 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGACAC................................................................................................................................................................................................................................ 21 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAGCCGTCTGGGACAG.................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCCTGCTGGGACTGAGGA................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATGAAAGGGTTGCTAGACACC............................................................................................................................................................................................................................... 21 0 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GGATGAAAGGGTTGCTAGACA................................................................................................................................................................................................................................. 21 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGAAAGGGTTGCTAGACTGC............................................................................................................................................................................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGAAAGGGTTGCTAGAAAA................................................................................................................................................................................................................................ 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................GCCTGCTGGGACTGAGGAC............................................................................................................................................................................................... 19 3 17 0.12 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................AAAATGAAAGGGTTGCTA..................................................................................................................................................................................................................................... 18 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AAAATGAAAGGGTTGCTAAAA.................................................................................................................................................................................................................................. 21 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATGAAAGGGTTGCTAAAAA................................................................................................................................................................................................................................. 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGGGACAGTGGTTATCTGT......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGGCTGGCTCATCGGTGTCTCT.................. 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGGCCGCCCGGCTAGCTCA............................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTGTG............... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGTTACAGAACTGATTGTTT...................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................AGTCGTTTGTTGGTTGTG.......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................TTTTGTCTGTCGGTGCTT......................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTGT................ 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTCCAGCGACCTTAATTTTACTTTCCCAACGATCTGTGGTCTCGGAGCCAGTCGGACGACCCTGTCACCTATAATCAGCAAACAACCAACTTCGAAAATATACACGTAGTAAATTTTACGTCGGCTAACAGCGTCAAAACAAGAACAACATTTTAACAACTAAGTAGTTACAAAACACACAGCAACGAACAATGCTTTGACTAACAAAGATCCACCCGGCGCGCCGACCGAGTAGCCAAAGAGAAACGAAGACACCGTGTGT
***************************************************************************************************************************************************************((((((.((...((((((....))).)))....)).))))))............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 M027
male body		 SRR060671
9x160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 V053
head
 SRR060674
9x140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060683
160_testes_total
.....CAGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 26 0 3 1.00 3 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAGTTCCGCCGGGCGCGCCGA................................... 21 3 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CCAGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 27 0 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 25 0 3 0.67 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................TGTGGTCTCGGAGCCAGTCGGACGA........................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTCGATCTGTGGTCTCGGAGCCAGT.................................................................................................................................................................................................................. 25 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACCAACTTCGAAAATATACAC............................................................................................................................................................. 21 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CCAGCGACCTTAATTTTACTTTCCCA.......................................................................................................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGCAAACAACCAACTTCGGGA..................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCCGGCGCGCCCACCGAGTAGCCA........................ 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CTCCAGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGCGCGCCCACCGAGTAGCCA........................ 21 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CCTCCAGCGGCCTTAATTTT................................................................................................................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AACCAACTTCGAAAATATAC............................................................................................................................................................... 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...TCCAGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 24 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCGACCTTAATTTTACTTTC............................................................................................................................................................................................................................................. 20 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CCTGTCACCTGTAATCAGCAA..................................................................................................................................................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ACAACTAAGTAGTTACAAAAC...................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGACGACCCTGTCACCTATAAT........................................................................................................................................................................................... 22 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...CATAGCGACCTTAATTTTACTTTCCCAA......................................................................................................................................................................................................................................... 28 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TACAAAACACACAGCAACGAACAATGCTT................................................................. 29 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGAACAATGCTTTGACTAAC......................................................... 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................CGACCCTGTCACCTATAATCA......................................................................................................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGACGACCCTGTCACCTATAA............................................................................................................................................................................................ 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ACAAAACACACAGCGACGGACAATGCTT................................................................. 28 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACGTCTAAGTAGTTACAAA........................................................................................ 20 2 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
.......................................................................................................................ACGTCGGCTAACAGCGTCAA............................................................................................................................. 20 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TAGTACATTTTACGTCGGCTA....................................................................................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................ACGTCGGCTAACAGCGTCAAGG........................................................................................................................... 22 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCCTCCGGGCGCGCCGAGC................................. 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCCGCCGGGCGCGCCGAGC................................. 19 3 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1
..................................................................................................................................CAGCGTCAGGGCAAGAACAAC................................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................GGCGCCGACTGAGTAGCCA........................ 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................AACCGCGTCACAGCAAGAAC.................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GCCGACCGAGTAGCCAAAG..................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTTCCGCCGGGCGCGCCGA................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGCGCCGACCGAGTAGCCT........................ 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13036:578664-578927 - dvi_14086 TGGAGGTCGCTGGAATTAAAATGAAAGGGTTGCTAGACACCAGAGCCTCGGTCAGCCTGCTGGGACAGTGGATATTAGTCGTTTGTTGGTTGAAGCTTTTATATGTGCATCATTTAAAATGCA-GCCGATTGTCGCAGTTTTGTTCTTGTTGTAAAATTGTTGATTCATCAATGTTTTGTGTGTCGTTGCTTGTTACGAAACTGATTGTTTCTAGGTGGGCCGCGCGGCTGGCTCATCGGTTTCTCTTTGCTTCTGTGGCACACA
droGri2 scaffold_15116:760634-760699 + TGAGCATTGAAGGTAAACAAATTGCGGGACTTTTGGATACCGGTGCCTCAGTGAGTATTTTGGGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004852:686692-686763 - TAGC------AGGAGTCCAGATGAAAGCGACAATTGACTCCGGAGCCACGAGTAGTTTCATCAGCAAGCAGATATTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_334:1542-1609 + TGCAGATAAGAGGACATCGGATTGCTGGACTCCTAGATACTGGGGCATCCGTTAGTGTCTTAGGAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:6485660-6485727 + TGCAGATAAGAGGACATCGGATTGCTGGACTCCTAGATACTGGGGCATCCGTTAGTGTCTTAGGAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:249699-249763 + TCAAGGTAGCAGGGAGAATGATGAGAGGACTACTAGATTCCGGAGCTTCGATTAGTCTAATTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000392917:15890-15954 + TCAAGGTGGCAGAAATGGAGATGAAAGGTCTGTTGGATTCTGGAGCTTTGGTCAGTTTAGTCGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302642:8550-8680 + TCAGT-CGTATGTTTGTCGGAGTGTTGA-----TTA-------------------------------------------------------------------TGTGTAGCATCTCCAGAGTATACCGCTTCTTGTAGTGTTGTTCTTGTTGCAGAATCGTTGTCTCCTCTAAGTTCGGAGAGTGACCGCTTGTCGCACAGTTG-------------------------------------------------------------
droEle1 scf7180000491003:342-435 + TCCGAGTCCTGACCAAGCAACTGACGGGGTTGTTGGACACTGGAGCGAGTGTGAGTCTGCTTGGAAAA-GGTGGCAGAGAATTAGTCGAA------------------------------------------------------------------------------------------------------------GCCTT--------------------------------------------------------------
droRho1 scf7180000762106:174-237 - TGGAGGTCATGGGCCAGCTGCTCACAGGCTTGTTGGACACGGGGGCCAGTGTAAGCGTGCTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414018:7613-7704 - TGACTATAGCAGACCAGGAGATCTAAGGACTGCTGGATTCTGGAGCTTCCATTAGCGTTTTGGGTACC-GGTTGCCAGGAGTTGGTGGATCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000405835:3475-3522 - AGGAGACCCTCGGG----------------AGCACGACACGGGAGCAT-TGTCAGCCTGTTGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGAGGTCGCTGGAATTAAAATGAAAGGGTTGCTAGACACCAGAGCCTCGGTCAGCCTGCTGGGACAGTGGATATTAGTCGTTTGTTGGTTGAAGCTTTTATATGTGCATCATTTAAAATGCA-GCCGATTGTCGCAGTTTTGTTCTTGTTGTAAAATTGTTGATTCATCAATGTTTTGTGTGTCGTTGCTTGTTACGAAACTGATTGTTTCTAGGTGGGCCGCGCGGCTGGCTCATCGGTTTCTCTTTGCTTCTGTGGCACACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................TGAAAGGGTTGCTAGACACCAGAGCCT.........................................................................................................................................................................................................................27544.802245922410301100000000000000011000102011010013151188101581147748200390000
.....................TGAAAGGGTTGCTAGACACCAGAGCC..........................................................................................................................................................................................................................2658.2041509500100001200000000000027000002010111000000000001100000001000
.....................TGAAAGGGTTGCTAGACACCAGAGC...........................................................................................................................................................................................................................2551.809001000000000000000000000003010002000002000000000000000000000000
.....................TGAAAGGGTTGCTAGACACCAGAGCCC.........................................................................................................................................................................................................................2751.407500200000000000000000000000000000000000000000000000000000000000
..................................AGACACCAGAGCCTCGGTCAG..................................................................................................................................................................................................................2121.002100000000000000000000000001000000000000000000000000000000000000
...................................................TCAGCCTGCTGGGACAGTGGA.................................................................................................................................................................................................2131.003000000000000100000000000000010000000001000000000000000000000000
.......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTTTGCTTCTG.........2511.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCTCATCGGTTTCTCTTTGCTTCTGTG.......2711.001000000000000000000000000010000000000000000000000000000000000000
.....GTCGCTGGAATTAAAATGAAAGGGTT..........................................................................................................................................................................................................................................2630.672000000000000000000000000000100000000100000000000000000000000000
.....................................................................................TTGGTTGAAGCTTTTATATG................................................................................................................................................................2030.672000000000000000000000001000000000000000000000000000000000000100
.............................TTGCTAGACACCAGAGCCTCGGTCA...................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
................................CTAGACACCAGAGCCTCGGTC....................................................................................................................................................................................................................2120.501000000000000000000000001000000000000000000000000000000000000000
...............................................TCGGTCAGCCTGCTGGGACAG.....................................................................................................................................................................................................2120.501000000000000000000000000100000000000000000000000000000000000000
.......................AAAGGGTTGCTAGACACCAGA.............................................................................................................................................................................................................................2150.402000000000000000000000000002000000000000000000000000000000000000
........................AAGGGTTGCTAGACACCAGAGCCT.........................................................................................................................................................................................................................2450.402000000000000000000000000000000000000000001000000000001000000000
...................................................................................................................................................................................................................................................CTCTTTGCTTCTGTGGCAC...1930.331001000000000000000000000000000000000000000000000000000000000000
......................................................................................TGGTTGAAGCTTTTATATGTG..............................................................................................................................................................2130.331000000000000000000000000100000000000000000000000000000000000000
..........................................................................TTAGTCGTTTGTTGGTTGAAGC.........................................................................................................................................................................2230.331001000000000000000000000000000000000000000000000000000000000000
.....GTCGCTGGAATTAAAATGAAAGGGT...........................................................................................................................................................................................................................................2530.331000000000000000000000000000000000000100000000000000000000000000
...................................................................................TGTTGGTTGAAGCTTTTATA..................................................................................................................................................................2030.331000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................TCATCAATGTTTTGTGTGTCG...............................................................................2140.251000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................ATGTTTTGTGTGTCGTTGCTT.........................................................................2140.251100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAATTGTTGATTCATCAATGTT.........................................................................................2240.251000000000000000000000000000100000000000000000000000000000000000
..........................................................................TTAGTCGTTTGTTGGTTG.............................................................................................................................................................................1880.252000000000000000000000000000002000000000000000000000000000000000
........................................................................................................................................................................................CGTTGCTTGTTACGAAACTGA............................................................2140.251000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................AATTGTTGATTCATCAATGTT.........................................................................................2140.251000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................TGATTCATCAATGTTTTGTGT...................................................................................2140.251000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................ATCAATGTTTTGTGTGTCG...............................................................................1940.251000000100000000000000000000000000000000000000000000000000000000
.........................................................................ATTAGTCGTTTGTTGGTTGA............................................................................................................................................................................2040.251000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................ATTTAAAATGCA-GCCGATTGT....................................................................................................................................2150.201000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................TAAAATGCA-GCCGATTGTCGC.................................................................................................................................2150.201000000000000000000000000000100000000000000000000000000000000000
...................AATGAAAGGGTTGCTAGACACCAGAG............................................................................................................................................................................................................................2650.201000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................CATCATTTAAAATGCA-GCCG.........................................................................................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
.......................AAAGGGTTGCTAGACACCAGAGCCT.........................................................................................................................................................................................................................2550.201001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATTTAAAATGCA-GCCGATTG.....................................................................................................................................2050.201000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................CGCAGTTTTGTTCTTGTTGTA...............................................................................................................2150.201000000000000000000000000000100000000000000000000000000000000000
....................ATGAAAGGGTTGCTAGACACCAGAGC...........................................................................................................................................................................................................................2650.201000100000000000000000000000000000000000000000000000000000000000
.....................TGAAAGGGTTGCTAGACACCAGAGCCG.........................................................................................................................................................................................................................2750.201100000000000000000000000000000000000000000000000000000000000000
...................AATGAAAGGGTTGCTAGACACCAGAGCC..........................................................................................................................................................................................................................2850.201100000000000000000000000000000000000000000000000000000000000000
.....................TGAAAGGGTTGCTAGACACCAGAG............................................................................................................................................................................................................................2450.201000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................TGCA-GCCGATTGTCGCAGTTT............................................................................................................................2150.201000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................TTGTCGCAGTTTTGTTCTTGT...................................................................................................................2150.201000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................TGTGTGTCGTTGCTTGTTACG...................................................................2150.201000000000000000000000000000000000000001000000000000000000000000
...................AATGAAAGGGTTGCTAGACACCAGAGCCT.........................................................................................................................................................................................................................2950.201000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................AAAATGCA-GCCGATTGTCGCA................................................................................................................................2150.201000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................TATGTGCATCATTTAAAATGC...............................................................................................................................................2150.201000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................TCATTTAAAATGCA-GCCGATT......................................................................................................................................2150.201000000000000000000000000000100000000000000000000000000000000000
...................AATGAAAGGGTTGCTAGACACC................................................................................................................................................................................................................................2270.141000000000000000000000000000001000000000000000000000000000000000
.....................TGAAAGGGTTGCTAGACAC.................................................................................................................................................................................................................................1970.141001000000000000000000000000000000000000000000000000000000000000
...................AATGAAAGGGTTGCTAGACAC.................................................................................................................................................................................................................................2170.141000000000000000000000000000100000000000000000000000000000000000
....................ATGAAAGGGTTGCTAGACACC................................................................................................................................................................................................................................2170.141000000000000000000000000000000000000000000000000100000000000000
.................AAAATGAAAGGGTTGCTA......................................................................................................................................................................................................................................18100.101000000000000000000000001000000000000000000000000000000000000000
............................................................................AGTCGTTTGTTGGTTGTG...........................................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
droGri2
TGAGCATTGAAGGTAAACAAATTGCGGGACTTTTGGATACCGGTGCCTCAGTGAGTATTTTGGGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAGC------AGGAGTCCAGATGAAAGCGACAATTGACTCCGGAGCCACGAGTAGTTTCATCAGCAAGCAGATATTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............TCCAGATGAAAGCGACAATTGACT..................................................................................................................................................................................................................................24200.40810070
...............TCCAGATGAAAGCGACAATTGACTCCG...............................................................................................................................................................................................................................27200.35706010
...............TCCAGATGAAAGCGACAATTGACTC.................................................................................................................................................................................................................................25200.30605010
...C------AGGAGTCCAGATGAAAGCGACA.........................................................................................................................................................................................................................................23200.25505000
...........................CGACAATTGACTCCGGAGCCAC........................................................................................................................................................................................................................22200.20403010
..............GTCCAGATGAAAGCGACAATTGA....................................................................................................................................................................................................................................23200.15303000
..............GTCCAGATGAAAGCGACAATTGACTCC................................................................................................................................................................................................................................27200.15303000
..............GTCCAGATGAAAGCGACAATTGACT..................................................................................................................................................................................................................................25200.15303000
..............................................CACGAGTAGTTTCATCAGCAAGCAG..................................................................................................................................................................................................25100.10100010
...C------AGGAGTCCAGATGAAAGCGACAA........................................................................................................................................................................................................................................24200.10202000
...C------AGGAGTCCAGATGAAAGCGACAAT.......................................................................................................................................................................................................................................25200.10200020
...C------AGGAGTCCAGATGAAAGCGAC..........................................................................................................................................................................................................................................22200.10201100
................CCAGATGAAAGCGACAATTGACTCCGG..............................................................................................................................................................................................................................27200.10202000
................CCAGATGAAAGCGACAATTGACTCC................................................................................................................................................................................................................................25200.10220000
...........................CGACAATTGACTCCGGAGCCACGAG.....................................................................................................................................................................................................................25200.10200020
............................................GCCACGAGTAGTTTCATCAGCAAG.....................................................................................................................................................................................................24100.10101000
...................................................GTAGTTTCATCAGCAAGCAGA.................................................................................................................................................................................................21110.09100100
..................................TGACTCCGGAGCCACGAGTAGTTTCA.............................................................................................................................................................................................................26120.08100010
.................................TTGACTCCGGAGCCACGAGTAGTTTCA.............................................................................................................................................................................................................27120.08100010
...........................CGACAATTGACTCCGGAGCCACGAGTA...................................................................................................................................................................................................................27200.05101000
..............GTCCAGATGAAAGCGACAATTGACTCCG...............................................................................................................................................................................................................................28200.05101000
TAGC------AGGAGTCCAGATGAAAGCGACAAT.......................................................................................................................................................................................................................................28200.05101000
.........................AGCGACAATTGACTCCGGAGC...........................................................................................................................................................................................................................21200.05110000
.............AGTCCAGATGAAAGCGACAATTGAC...................................................................................................................................................................................................................................25200.05101000
.........................AGCGACAATTGACTCCGGAG............................................................................................................................................................................................................................20200.05101000
...................GATGAAAGCGACAATTGACTCCGGAG............................................................................................................................................................................................................................26200.05100010
......................GAAAGCGACAATTGACTCCGGAGCCA.........................................................................................................................................................................................................................26200.05101000
............................GACAATTGACTCCGGAGCCACGAGT....................................................................................................................................................................................................................25200.05100010
.AGC------AGGAGTCCAGATGAAAG..............................................................................................................................................................................................................................................20200.05101000
TAGC------AGGAGTCCAGATGAAAGCGACA.........................................................................................................................................................................................................................................26200.05100010
...................GATGAAAGCGACAATTGACTCCGGAGC...........................................................................................................................................................................................................................27200.05101000
................CCAGATGAAAGCGACAATTGAC...................................................................................................................................................................................................................................22200.05101000
...C------AGGAGTCCAGATGAAAG..............................................................................................................................................................................................................................................18200.05101000
...........GGAGTCCAGATGAAAGCGACAATTGA....................................................................................................................................................................................................................................26200.05101000
..............GTCCAGATGAAAGCGACAATTGACTT.................................................................................................................................................................................................................................26200.05101000
...C------AGGAGTCCAGATGAAAGCGACAATT......................................................................................................................................................................................................................................26200.05101000
TAGC------AGGAGTCCAGATGAAAGCG............................................................................................................................................................................................................................................23200.05101000
...............TCCAGATGAAAGCGACAATTGACTCCC...............................................................................................................................................................................................................................27200.05100010
...............TCCAGATGAAAGCGACAATTGACTCC................................................................................................................................................................................................................................26200.05100010
..............GTCCAGATGAAAGCGACAATTG.....................................................................................................................................................................................................................................22200.05101000
.....................TGAAAGCGACAATTGACTCCGGAGCC..........................................................................................................................................................................................................................26200.05100010
.............................ACAATTGACTCCGGAGCCACGAG.....................................................................................................................................................................................................................23200.05101000
...........................CGACAATTGACTCCGGAGCCACGAGT....................................................................................................................................................................................................................26200.05100010
...........................CGACAATTGACTCCGGAGCCACGAGA....................................................................................................................................................................................................................26200.05110000
.................CAGATGAAAGCGACAATTGACTCCG...............................................................................................................................................................................................................................25200.05100010
..................................TGACTCCGGAGCCACGAGTAG..................................................................................................................................................................................................................21200.05101000
......................GAAAGCGACAATTGACTCCGGAGCC..........................................................................................................................................................................................................................25200.05100010
dp5
TGCAGATAAGAGGACATCGGATTGCTGGACTCCTAGATACTGGGGCATCCGTTAGTGTCTTAGGAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................TCGGATTGCTGGACTCCTAGATAC.................................................................................................................................................................................................................................2478.0056029200002500
......................TGCTGGACTCCTAGATACTGGGGCA..........................................................................................................................................................................................................................2576.294403400100900
......................TGCTGGACTCCTAGATACTGGGG............................................................................................................................................................................................................................2374.293002500200300
......................TGCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2473.712612300000200
......................TGCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2173.712602300200100
......................TGCTGGACTCCTAGATACTGGG.............................................................................................................................................................................................................................2273.432402210000100
......TAAGAGGACATCGGATTGCTGGAC...........................................................................................................................................................................................................................................2472.141503000001200
......................TGCTGGACTCCTAGATACTG...............................................................................................................................................................................................................................2072.001401300100000
................TCGGATTGCTGGACTCCTAGATACTG...............................................................................................................................................................................................................................2671.43100600000400
......................TGCTGGACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................2771.43100810000100
................TCGGATTGCTGGACTCCTAGATA..................................................................................................................................................................................................................................2371.43100400000600
................TCGGATTGCTGGACTCCTAGATACT................................................................................................................................................................................................................................2571.43100310000600
................TCGGATTGCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2771.43100800000200
...................GATTGCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2471.0070700000000
......................TGCTGGACTCCTAGATACTGGGGCATCC.......................................................................................................................................................................................................................2870.8660600000000
......TAAGAGGACATCGGATTGCTGG.............................................................................................................................................................................................................................................2270.5740000000400
.....................TTGCTGGACTCCTAGATACTGGGT............................................................................................................................................................................................................................2470.5740200000200
.....................TTGCTGGACTCCTAGATACTGGGG............................................................................................................................................................................................................................2470.5740400000000
......TAAGAGGACATCGGATTGCTGGA............................................................................................................................................................................................................................................2370.5740200000200
.......................GCTGGACTCCTAGATACTGGGG............................................................................................................................................................................................................................2270.4330300000000
................TCGGATTGCTGGACTCCTAGATACA................................................................................................................................................................................................................................2570.4330100000200
.........................TGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2170.4330300000000
.........................TGGACTCCTAGATACTGGG.............................................................................................................................................................................................................................1970.4330300000000
........AGAGGACATCGGATTGCTGGA............................................................................................................................................................................................................................................2170.4330000000300
.........GAGGACATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2870.4330100000200
.............ACATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2470.4331200000000
................TCGGATTGCTGGACTCCTAG.....................................................................................................................................................................................................................................2070.4330300000000
.................CGGATTGCTGGACTCCTAGATACT................................................................................................................................................................................................................................2470.4330300000000
......................TGCTGGACTCCTAGATACTGGGGCAC.........................................................................................................................................................................................................................2670.4330110000100
........................................TGGGGCATCCGTTAGTGTCTTAGGAA.......................................................................................................................................................................................................2670.4330200000100
................TCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2170.4330200000100
.......................GCTGGACTCCTAGATACTGGGGCA..........................................................................................................................................................................................................................2470.4330300000000
......TAAGAGGACATCGGATTGCTGGACT..........................................................................................................................................................................................................................................2570.2920200000000
......TAAGAGGACATCGGATTGCTGGACTCC........................................................................................................................................................................................................................................2770.2920200000000
.......................GCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2370.2920200000000
.....................TTGCTGGACTCCTAGATACTG...............................................................................................................................................................................................................................2170.2920200000000
.................CGGATTGCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2670.2920200000000
......................TGCTGGACTCCTAGATACTGGGGT...........................................................................................................................................................................................................................2470.2920200000000
........................CTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2270.2920200000000
............GACATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2570.2920200000000
......................TGCTGGACTCCTAGATACTGGGGCAA.........................................................................................................................................................................................................................2670.2920200000000
......TAAGAGGACATCGGATTGCTGGACA..........................................................................................................................................................................................................................................2570.2920200000000
..........................GGACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................2370.2920200000000
.......................GCTGGACTCCTAGATACTGGGGCATCC.......................................................................................................................................................................................................................2770.2920200000000
......................TGCTGGACTCCTAGATACTGGGT............................................................................................................................................................................................................................2370.2920200000000
.........................TGGACTCCTAGATACTGGGGCA..........................................................................................................................................................................................................................2270.2920200000000
..........................GGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2070.2920200000000
......................TGCTGGACTCCTAGATACTGGGGCAT.........................................................................................................................................................................................................................2670.2920200000000
.....................................TACTGGGGCATCCGTTAGTGTCT.............................................................................................................................................................................................................2380.2520110000000
.........GAGGACATCGGATTGCTGGA............................................................................................................................................................................................................................................2070.1410100000000
.................CGGATTGCTGGACTCCTAGATAC.................................................................................................................................................................................................................................2370.1410100000000
...........................GACTCCTAGATACTGGGGCATCCGTT....................................................................................................................................................................................................................2670.1410100000000
........AGAGGACATCGGATTGCTGGACTC.........................................................................................................................................................................................................................................2470.1410100000000
........AGAGGACATCGGATTGCTGGAC...........................................................................................................................................................................................................................................2270.1410000000100
TGCAGATAAGAGGACATCGGATTGC................................................................................................................................................................................................................................................2570.1410010000000
......TAAGAGGACATCGGATTGCTGT.............................................................................................................................................................................................................................................2270.1410000000100
......TAAGAGGACATCGGATTGCTGGT............................................................................................................................................................................................................................................2370.1410100000000
....GATAAGAGGACATCGGATTGCTGGA............................................................................................................................................................................................................................................2570.1410100000000
...........GGACATCGGATTGCTGGACTC.........................................................................................................................................................................................................................................2170.1410100000000
..............................TCCTAGATACTGGGGCATCCGTT....................................................................................................................................................................................................................2370.1410100000000
............................................GCATCCGTTAGTGTCTTAGGAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2470.1410100000000
.......................GCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2070.1410100000000
..............................TCCTAGATACTGGGGCATCC.......................................................................................................................................................................................................................2070.1410100000000
........AGAGGACATCGGATTGCTGGACT..........................................................................................................................................................................................................................................2370.1410100000000
........AGAGGACATCGGATTGCTGGAAA..........................................................................................................................................................................................................................................2370.1410100000000
........................CTGGACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................2570.1410100000000
...........GGACATCGGATTGCTGGACT..........................................................................................................................................................................................................................................2070.1410100000000
...................GATTGCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2770.1410100000000
.....................TTGCTGGACTCCTAGATACTGGGGTT..........................................................................................................................................................................................................................2670.1410100000000
...........GGACATCGGATTGCTGGACTCCTAGATT..................................................................................................................................................................................................................................2870.1410100000000
.........................TGGACTCCTAGATACTGGAA............................................................................................................................................................................................................................2070.1410100000000
.....................TTGCTGGACTCCTAGATACTGG..............................................................................................................................................................................................................................2270.1410100000000
......................TGCTGGACTCCTAGATACAT...............................................................................................................................................................................................................................2070.1410100000000
.......................GCTGGACTCCTAGATACTGGGCA...........................................................................................................................................................................................................................2370.1410100000000
TGCAGATAAGAGGACATCGGAT...................................................................................................................................................................................................................................................2270.1410000100000
...........GGACATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2670.1410100000000
..............CATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2370.1410100000000
......................TGCTGGACTCCTAGATACTGT..............................................................................................................................................................................................................................2170.1410100000000
............................ACTCCTAGATACTGGGGCATCC.......................................................................................................................................................................................................................2270.1410100000000
...................GATTGCTGGACTCCTAGATACT................................................................................................................................................................................................................................2270.1410100000000
...........GGACATCGGATTGCTGGACTCC........................................................................................................................................................................................................................................2270.1410100000000
..........................GGACTCCTAGATACTGGGGCATCCG......................................................................................................................................................................................................................2570.1410100000000
...........................GACTCCTAGATACTGGGGCATCCG......................................................................................................................................................................................................................2470.1410100000000
.......................GCTGGACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................2670.1410100000000
...................GATTGCTGGACTCCTAGATACTG...............................................................................................................................................................................................................................2370.1410100000000
......................TGCTGGACTCCTAGATACT................................................................................................................................................................................................................................1970.1410100000000
............................................GCATCCGTTAGTGTCTTAGGAAA......................................................................................................................................................................................................2370.1410100000000
................TCGGATTGCTGGACTCCTAGAT...................................................................................................................................................................................................................................2270.1410100000000
.........GAGGACATCGGATTGCTGGACTCC........................................................................................................................................................................................................................................2470.1410100000000
.............ACATCGGATTGCTGGACTCCTAGATAC.................................................................................................................................................................................................................................2770.1410100000000
...............ATCGGATTGCTGGACTCCTAG.....................................................................................................................................................................................................................................2170.1410100000000
......................TGCTGGACTCCTAGATACTGGGGCATT........................................................................................................................................................................................................................2770.1410100000000
........................................TGGGGCATCCGTTAGTGTCTTAGGAAA......................................................................................................................................................................................................2770.1410010000000
......................TGCTGGACTCCTAGATACTGGGAA...........................................................................................................................................................................................................................2470.1410100000000
.......................GCTGGACTCCTAGATACTGGGGAC..........................................................................................................................................................................................................................2470.1410100000000
.......................GCTGGACTCCTAGATACTGGT.............................................................................................................................................................................................................................2170.1410100000000
...............ATCGGATTGCTGGACTCCTAGAT...................................................................................................................................................................................................................................2370.1410100000000
...........................GACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................2270.1410100000000
....................ATTGCTGGACTCCTAGATACTG...............................................................................................................................................................................................................................2270.1410100000000
...........................GACTCCTAGATACTGGGGA...........................................................................................................................................................................................................................1970.1410100000000
......................TGCTGGACTCCTAGATACTGGT.............................................................................................................................................................................................................................2270.1410100000000
....................ATTGCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2670.1410100000000
TGCAGATAAGAGGACATCGGATTG.................................................................................................................................................................................................................................................2470.1410100000000
......................TGCTGGACTCCTAGATACTGGGGA...........................................................................................................................................................................................................................2470.1410100000000
.........................TGGACTCCTAGATACTGG..............................................................................................................................................................................................................................1870.1410100000000
............GACATCGGATTGCTGGACTCC........................................................................................................................................................................................................................................2170.1410100000000
.GCAGATAAGAGGACATCGGATTG.................................................................................................................................................................................................................................................2370.1410100000000
......................TGCTGGACTCCTAGATACTGGGTT...........................................................................................................................................................................................................................2470.1410100000000
.........................TGGACTCCTAGATACTGGGGCATCC.......................................................................................................................................................................................................................2570.1410100000000
.............ACATCGGATTGCTGGACTCCTAGAT...................................................................................................................................................................................................................................2570.1410010000000
.....................TTGCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................2570.1410100000000
...................GATTGCTGGACTCCTAGATACTGGG.............................................................................................................................................................................................................................2570.1410100000000
.....................TTGCTGGACTCCTAGATACTGT..............................................................................................................................................................................................................................2270.1410100000000
......TAAGAGGACATCGGATTGCT...............................................................................................................................................................................................................................................2070.1410100000000
..........AGGACATCGGATTGCTGGACTCCTAGA....................................................................................................................................................................................................................................2770.1410000000100
........................................TGGGGCATCCGTTAGTGTCTTAGGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2870.1410100000000
......TAAGAGGACATCGGATTGCTGGACTC.........................................................................................................................................................................................................................................2670.1410000000100
.....................TTGCTGGACTCCTAGATACTGGG.............................................................................................................................................................................................................................2370.1410100000000
........................................TGGGGCATCCGTTAGTGTCTTAGGA........................................................................................................................................................................................................2580.1310100000000
.................................TAGATACTGGGGCATCCGTTAGTGT...............................................................................................................................................................................................................2580.1310010000000
.....................................TACTGGGGCATCCGTTAGTGTC..............................................................................................................................................................................................................2280.1310100000000
.........GAGGACATCGGATTGCTGGACTTT........................................................................................................................................................................................................................................2480.1310000000100
........................................TGGGGCATCCGTTAGTGTCTTAGG.........................................................................................................................................................................................................2480.1310100000000
.....................................TACTGGGGCATCCGTTAGTGTTAA............................................................................................................................................................................................................2480.1310100000000
droPer2
TGCAGATAAGAGGACATCGGATTGCTGGACTCCTAGATACTGGGGCATCCGTTAGTGTCTTAGGAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GCAGATAAGAGGACATCGGATTGC................................................................................................................................................................................................................................................24181.783212200000
.GCAGATAAGAGGACATCGGATTG.................................................................................................................................................................................................................................................23181.00182140002
.GCAGATAAGAGGACATCGGAT...................................................................................................................................................................................................................................................21180.224220000
......................TGCTGGACTCCTAGATACTGGG.............................................................................................................................................................................................................................22180.224220000
.GCAGATAAGAGGACATCGGATTGCTGG.............................................................................................................................................................................................................................................27180.224040000
......................TGCTGGACTCCTAGATACTGGGGC...........................................................................................................................................................................................................................24180.112200000
..CAGATAAGAGGACATCGGATTGC................................................................................................................................................................................................................................................23180.112020000
......................TGCTGGACTCCTAGATACTGGGGCATC........................................................................................................................................................................................................................27180.112020000
......TAAGAGGACATCGGATTGCTGGA............................................................................................................................................................................................................................................23180.112200000
.GCAGATAAGAGGACATCGGATT..................................................................................................................................................................................................................................................22180.112010001
......TAAGAGGACATCGGATTGCTGGACT..........................................................................................................................................................................................................................................25180.112101000
.................................TAGATACTGGGGCATCCGTTAGTGT...............................................................................................................................................................................................................25100.101010000
..............................TCCTAGATACTGGGGCATCCGTTAGTG................................................................................................................................................................................................................27100.101010000
.....................................TACTGGGGCATCCGTTAGTGTC..............................................................................................................................................................................................................22110.091010000
..............................TCCTAGATACTGGGGCATCCGTTAG..................................................................................................................................................................................................................25130.081010000
......................TGCTGGACTCCTAGATACTGGGGCAT.........................................................................................................................................................................................................................26180.061010000
.GCAGATAAGAGGACATCGGATTGCTG..............................................................................................................................................................................................................................................26180.061010000
.......AAGAGGACATCGGATTGCTGG.............................................................................................................................................................................................................................................21180.061010000
TGCAGATAAGAGGACATCGGATTGC................................................................................................................................................................................................................................................25180.061010000
....GATAAGAGGACATCGGATTGC................................................................................................................................................................................................................................................21180.061010000
......................TGCTGGACTCCTAGATACTGGGGCAA.........................................................................................................................................................................................................................26180.061010000
......TAAGAGGACATCGGATTGCTGG.............................................................................................................................................................................................................................................22180.061010000
droAna3
TCAAGGTAGCAGGGAGAATGATGAGAGGACTACTAGATTCCGGAGCTTCGATTAGTCTAATTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................GACTACTAGATTCCGGAGCTTCGAT.....................................................................................................................................................................................................................25161.88302042022
...........................GACTACTAGATTCCGGAGCTTCGA......................................................................................................................................................................................................................24160.63101000000
...........................GACTACTAGATTCCGGAGCTTCG.......................................................................................................................................................................................................................23160.386600000
...........................GACTACTAGATTCCGGAGCTTC........................................................................................................................................................................................................................22160.132200000
............................ACTACTAGATTCCGGAGCTTCGAT.....................................................................................................................................................................................................................24160.132200000
.CAAGGTAGCAGGGAGAATGA....................................................................................................................................................................................................................................................20170.122200000
...................GATGAGAGGACTACTAGATTCCGGA.............................................................................................................................................................................................................................25130.081100000
................AATGATGAGAGGACTACTAGATTCCGGA.............................................................................................................................................................................................................................28130.081010000
...................GATGAGAGGACTACTAGATTCCGGAG............................................................................................................................................................................................................................26130.081100000
.CAAGGTAGCAGGGAGAATGATG..................................................................................................................................................................................................................................................22140.071100000
.CAAGGTAGCAGGGAGAATGATGA.................................................................................................................................................................................................................................................23140.071100000
...............GAATGATGAGAGGACTACTAGA....................................................................................................................................................................................................................................22140.071100000
.CAAGGTAGCAGGGAGAATGATGAG................................................................................................................................................................................................................................................24140.071100000
.....GTAGCAGGGAGAATGATGAGAGGACT..........................................................................................................................................................................................................................................26140.071000001
..............................TACTAGATTCCGGAGCTTCGATTAGTCT...............................................................................................................................................................................................................28150.071100000
..............................TACTAGATTCCGGAGCTTCGATTAGTC................................................................................................................................................................................................................27150.071100000
............................ACTACTAGATTCCGGAGCTTCGA......................................................................................................................................................................................................................23160.061100000
...........................GACTACTAGATTCCGGAGCTTCGATTA...................................................................................................................................................................................................................27160.061100000
.....................................TTCCGGAGCTTCGATTAGTCTAAT............................................................................................................................................................................................................24160.061001000
.............................CTACTAGATTCCGGAGCTTCGA......................................................................................................................................................................................................................22160.061100000
TCAAGGTAGCAGGGAGAATGAT...................................................................................................................................................................................................................................................22170.061100000
droBip1
TCAAGGTGGCAGAAATGGAGATGAAAGGTCTGTTGGATTCTGGAGCTTTGGTCAGTTTAGTCGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCAGT-CGTATGTTTGTCGGAGTGTTGA-----TTA-------------------------------------------------------------------TGTGTAGCATCTCCAGAGTATACCGCTTCTTGTAGTGTTGTTCTTGTTGCAGAATCGTTGTCTCCTCTAAGTTCGGAGAGTGACCGCTTGTCGCACAGTTG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCCGAGTCCTGACCAAGCAACTGACGGGGTTGTTGGACACTGGAGCGAGTGTGAGTCTGCTTGGAAAA-GGTGGCAGAGAATTAGTCGAA------------------------------------------------------------------------------------------------------------GCCTT--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGAGGTCATGGGCCAGCTGCTCACAGGCTTGTTGGACACGGGGGCCAGTGTAAGCGTGCTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGACTATAGCAGACCAGGAGATCTAAGGACTGCTGGATTCTGGAGCTTCCATTAGCGTTTTGGGTACC-GGTTGCCAGGAGTTGGTGGATCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGGAGACCCTCGGG----------------AGCACGACACGGGAGCAT-TGTCAGCCTGTTGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 06:41 PM