ID:

dvi_14082

 Coordinate:

scaffold_13036:564450-564600 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.7 -21.6 -21.6

Flybase annnotation

CDS [Dvir\GJ14637-cds]; exon [dvir_GLEANR_14719:2]; intron [Dvir\GJ14637-in]

Repeatable elements

NameClassFamilyStrand
Ulysses_LTRLTRGypsy-
mature
  1. scaffold_547:257-282 +
  2. dvi_14080  scaffold_13036:548154-548179 -
  3. scaffold_13036:554082-554107 +
  4. dvi_14082  scaffold_13036:564544-564569 -
  5. dvi_14083  scaffold_13036:577724-577749 -
star
  1. scaffold_547:309-335 +
  2. scaffold_13036:554134-554160 +
  3. dvi_14082  scaffold_13036:564491-564517 -
  4. dvi_14083  scaffold_13036:577671-577697 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGATTGTTTATTGTTATCAATTTGTGGTTCGTTTTGCACAGTGTTGTGTAAGTCTGTTTTGCCACAGACGTGTAGCTTTGTTGTAATCGATTGTGCCGACTGCGGGCCAGGGATGGGACTACACCCAGAAAAGCCGATAAGCCAGCCTGCGTGGCCCACCGAGAAACAAGAAGTTTCGTAACATTATGGCGCCCAATTAGGTCGCGCGGGGAGCGAAGTACTCATCCAGCAGCCCAGTATATGTCGCCGA
*********************************************************************************...........((.(((.((.((((((..((..((((......))))..............)).))))))))))).)).******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 M047
female body
 SRR060673
9_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060688
160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060675
140x9_ovaries_total
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 SRR060678
9x140_testes_total
 SRR060674
9x140_ovaries_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060670
9_testes_total
 SRR1106722
embryo_10-12h
 V053
head
.................................................................................TTGTAATCGATTGTGCCGACTGCGGG................................................................................................................................................ 26 0 5 2.40 12 2 2 1 0 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCGG................................................................................................................................................. 25 0 5 1.60 8 1 2 2 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCGGGC............................................................................................................................................... 27 0 5 1.20 6 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGTCGC... 27 0 5 0.60 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCGGGCC.............................................................................................................................................. 28 0 5 0.60 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGC................................................................................................................................................... 23 0 5 0.60 3 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCGTTTTGCACAGTGTTGTGTAAG...................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTGTGTAAGTCTGTTTTGCCACA........................................................................................................................................................................................ 25 0 4 0.50 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CAGTGTTGTGTAAGTCTGTTT............................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CGATTGTGCCGACTGCGGGCC.............................................................................................................................................. 21 0 5 0.40 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTTGCCACAGACGTGTAGCTT............................................................................................................................................................................ 21 0 5 0.40 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GATTGTGCCGACTGCGGGC............................................................................................................................................... 19 0 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCGT................................................................................................................................................. 25 1 5 0.40 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AATCGATTGTGCCGACTGCGG................................................................................................................................................. 21 0 6 0.33 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ACAGTGTTGTGTAAGTCTGGTTTG............................................................................................................................................................................................. 24 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACTCATCCAGCAGCCCAGTATATGT...... 26 0 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................GTTGTGTAAGTCTGTTTTGCCACAG....................................................................................................................................................................................... 25 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCCGATAAGCCAGCCTGCGTGGCCCAC........................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGT...... 24 0 8 0.25 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TATTGTTATCAATTTGTGGTTCGT.......................................................................................................................................................................................................................... 24 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTTGTGTAAGTCTGTTTTGCCACAGA...................................................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGTGTAAGTCTGTTTTGCCACAG....................................................................................................................................................................................... 24 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAACATTATGGCGCCCAATTAGGTCG.............................................. 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCG.................................................................................................................................................. 24 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCGCGCGGGGAGCGAAGTACTCATCCAG..................... 28 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACAAGAAGTTTCGTAACATT................................................................. 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCCAATTAGGTCGCGCGGGGA...................................... 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAATTAGGTCGCGCGGGGAG..................................... 20 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AGCTTTGTTGTAATCGATTGTGCCGACT..................................................................................................................................................... 28 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACCCAGAAAAGCCGATAAGCCAG......................................................................................................... 23 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CACCCAGAAAAGCCGATAAGCCAG......................................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTCGTAACATTATGGCGCCCAATTAGGT................................................ 28 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTGCCACAGACGTGTAGCTTT........................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTAGCTTTGTTGTAGTCGATT.............................................................................................................................................................. 21 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTCGTAGCATTATGGCGCCCA....................................................... 21 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GAAAAGCCGATAAGCCAGCCTGCGT.................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAATTAGGTCGCGCGGGGAGC.................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGTC..... 25 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGGGTCGCGCGGGGAGCGA.................................. 20 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAAAACCGATATGCCCGCCTGCGT.................................................................................................. 24 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGACTGCGGGT............................................................................................................................................... 27 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GAAAAGCCGATAAGCCAGC........................................................................................................ 19 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAACATTATGGCGCCCAATTAGGT................................................ 24 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TAAGTCTGTTTTGCCACAGACGTGT................................................................................................................................................................................. 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TAAGTCTGTTTTGCCACAGACGTGTAGC.............................................................................................................................................................................. 28 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTAATCGATTGTGCCGA....................................................................................................................................................... 19 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTGGGTCGCGCGGGGAGCGA.................................. 21 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TAGCTTTGTTGTAATCGATTG............................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCGATTGTGCCGACTGCGGGCCA............................................................................................................................................. 23 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTAGGTCGCGCGGGGAGCG................................... 20 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTATGGCGCCCAATTAGGTCG.............................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTTGTTGTAATCGATTGTGC.......................................................................................................................................................... 20 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGGGCCACAGACGTGTAGCTT............................................................................................................................................................................ 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CACCCAGAAAAGCCGATAAGCCAGC........................................................................................................ 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGTTGTAATCGATTGTGCCGACTGCGG................................................................................................................................................. 27 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGAAAAGCCGATAAGCCAG......................................................................................................... 19 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................CGCCCAATTGGGTCGCGCGGG........................................ 21 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AAGAAGTTTCGTAACATTATG.............................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................CGTCTGCGGACCAGGGATGGGA.................................................................................................................................... 22 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGGAGCCCAATGAGGTCGC............................................. 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GCCAGGGATGGGACTACACCCAGAAA....................................................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AATGACGGCGCGCGGGGAGCG................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................TAGGGATGGGACTACCCCCAGAAAA...................................................................................................................... 25 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCGCTTTGCACAGTGTTGTGTAAG...................................................................................................................................................................................................... 24 1 16 0.13 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCGTCCAGCAGCCCAGTATATGT...... 24 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GGGAGTACACACAGAAAAGCT................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................CAGACGTGTAGCTTTGTAAAA..................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTGTGTAAGTTTGTTTTGCCACAGA...................................................................................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTACTCATCCAGCAGCCCAGT............ 21 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GTGTTGTGTGAGTCTGTTTTGCC........................................................................................................................................................................................... 23 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
................................................................ACAGACGTGTAGCTTTGTTGT...................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AACCCAGAAAAGCCGTTAA.............................................................................................................. 19 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CAGGGATTGGACTACACCCAGAAAA...................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CAGGGATGGTACTACACCCAAAAAA...................................................................................................................... 25 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTGTTGTGTAAGTCTGTTTTGC............................................................................................................................................................................................ 22 0 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................AGTGTTGTGTAAGTCTGTTTTGC............................................................................................................................................................................................ 23 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................TAGTGTTGTGTAAGTCTGTTTTGCC........................................................................................................................................................................................... 25 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGGAGCCCAATGAGGTCGC............................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCGCTTTGCACAGTGTTGTGT......................................................................................................................................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCGGGCTAGGGATGGGACTACCCCCA........................................................................................................................... 27 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTGTTATCGATTGTGCCGACTGCGGT................................................................................................................................................ 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACTTCGGGCCAGGGATGGG..................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTTGGCCCACCGAGAAGCC.................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................GACTGCGGGCCAGGGATGGGACTTT................................................................................................................................ 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCGGGCCAGGGATGGGACTACACCCAG.......................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCGGGCCAGGGATGGGACTACACCCA........................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACAGACGTGTAGCTTTGTTG....................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GCCAGGGATGGGACTACACCTAG.......................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GGCCAGGGATGGGACTACACCC............................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TGCGGGCCAGGGATGGGACTACACCC............................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................TCTGCGGACCAGGGATGGGAC................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTGTTATCGATTGTGCCGACTGCG.................................................................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGGCCAGGGATGGGACTA................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GACGTGTAGCTTTGTTGT...................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGCTAACAAATAACAATAGTTAAACACCAAGCAAAACGTGTCACAACACATTCAGACAAAACGGTGTCTGCACATCGAAACAACATTAGCTAACACGGCTGACGCCCGGTCCCTACCCTGATGTGGGTCTTTTCGGCTATTCGGTCGGACGCACCGGGTGGCTCTTTGTTCTTCAAAGCATTGTAATACCGCGGGTTAATCCAGCGCGCCCCTCGCTTCATGAGTAGGTCGTCGGGTCATATACAGCGGCT
*******************************************************************************************...........((.(((.((.((((((..((..((((......))))..............)).))))))))))).)).********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 M061
embryo
 SRR060677
Argx9_ovaries_total
 SRR060673
9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 V116
male body		 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060678
9x140_testes_total
 M028
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060689
160x9_testes_total
 V047
embryo
 V053
head
 SRR060671
9x160_males_carcasses_total
 SRR060680
 9xArg_testes_total
..................................................................................................................................................................................................................CCTCGCTTCATGAGTAGGTCG.................... 21 0 6 1.67 10 0 0 0 2 1 3 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CCGGTCCCTACCCTGATGTGGGTCTTT....................................................................................................................... 27 0 7 1.29 9 5 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCACATCGAAACAACATTAGCT................................................................................................................................................................ 22 0 5 0.80 4 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TGTCTGCACATCGAAACAACATTAGCT................................................................................................................................................................ 27 0 5 0.80 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTCTGCACATCGAAACAACATTAGCT................................................................................................................................................................ 26 0 5 0.80 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CCCTCGCTTCATGAGTAGGTCG.................... 22 0 5 0.60 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCCGGTCCCTACCCTGATGTGGGTCTTT....................................................................................................................... 28 0 7 0.57 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGGTCCCTACCCTGATGTGGGTCTTT....................................................................................................................... 26 0 7 0.57 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TAAACACCAAGCAAAACGTGTCACAACAC.......................................................................................................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGTTAAACACCAAGCAAAACGTGTC................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGCACATCGAAACAACATTAGCT................................................................................................................................................................ 23 0 5 0.40 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGCACATCGAAACAACATTAGCT................................................................................................................................................................ 24 0 5 0.40 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CGTCTGCACATCGAAACAACATTAGCT................................................................................................................................................................ 27 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGGTGTCTGCACATCGAAACA......................................................................................................................................................................... 21 0 5 0.40 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGGTCTTTTCGGCTATTCG............................................................................................................ 20 0 5 0.40 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTCCCTACCCTGATGTGGGTCTTT....................................................................................................................... 25 0 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CCGGTCCCTACCCTGATGTGGGTCTT........................................................................................................................ 26 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATATAACAAATAACAATAGTTAAACACCA.............................................................................................................................................................................................................................. 29 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGGACGCACCGGGTGGCTCTTTCAA................................................................................. 25 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACCGGGTGGCTCTTTGTTCT............................................................................... 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AACAATAGTTAAACACCAAGCAAAACGT.................................................................................................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGACGCACCGGGTGGCTCTTT.................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTTTGTTCTTCAAAGCATTGTAATAC.............................................................. 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GCTATTCGGTCGGACGCACC................................................................................................ 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCTGCACATCGAAACAACATTAGC................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CCCCTCGCTTCGTGAGTAGGTC..................... 22 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GGTGGCTCTTTGTTCTTCGAA.......................................................................... 21 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTCGTCGGGTCATATACAGC.... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCTGCACATCGAAACAACATTAGCT................................................................................................................................................................ 25 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGGTGTCTGCACGTCGGAACA......................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTCGCTTCATGAGTAGGTCGTCGGGT.............. 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCACATCGAAAGAACATTAGCT................................................................................................................................................................ 22 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACATCGAAACAACATTAGCTAACACG.......................................................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCGCCCCTCGCTTCATGAGTA......................... 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGTGGGTCTTTTCGGCTATTCG............................................................................................................ 22 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGGTGGCTCTTTGTTCTTC............................................................................. 19 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTCTGCACATCGAAACAACAT..................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GATGTGGGTCTTTCCGGCTAT............................................................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTCGTCGGGTCATATACAGCG... 21 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGTGGGTCTTTTCGGCTATT.............................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GGTCTTTTCGGCTATTCGGTC......................................................................................................... 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TAGCTAACACGGCTGACGCCC................................................................................................................................................ 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCTTCGTGAGTAGGTCGTCG................. 21 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATCGCTTCATGAGTAGGTCG.................... 20 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTTCACGAGTAGGTCG.................... 21 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCTTCATGAGTAGGTCGTCG................. 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTCGCTTCATGAGTAGGTCG.................... 20 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TGTCTGCACATCGAAACAACA...................................................................................................................................................................... 21 0 20 0.15 3 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTCTGCACATCGAAACAACA...................................................................................................................................................................... 20 0 20 0.15 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCTGCACATCGAAACAAC....................................................................................................................................................................... 18 0 20 0.15 3 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TAGCTGACACGGCTGACGCCC................................................................................................................................................ 21 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTTCGCTTCATGAGTAGGTCGTCGG................ 25 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCGTCGGGTCGTGTACAGC.... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................CCTGATTTGCGTCTTTTCCG................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CATGAGTAGGTCGTCGGGTC............. 20 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CATGAGTAGGTCGTCGGGTCA............ 21 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGTAGGTCGTCGGGTCGTAT......... 21 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................CTCCCCTGATGTAGGTCTT........................................................................................................................ 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................CCCGGTCCCTAACCTGATGTGGGTCTTT....................................................................................................................... 28 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CCGGTCCCTAACCTGATGTGGGTCTTT....................................................................................................................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGACTATTCGGTCGGACGAC.................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................AGTTAAACACCAAGCGAAACGT.................................................................................................................................................................................................................... 22 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCCGGTCCCTAACCTGATGTGGGTTTTT....................................................................................................................... 28 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TAACTAACACGGATGTCGCC................................................................................................................................................. 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................GTTGTGATACCGCGGGTTAA.................................................... 20 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TCACAACACATTCAGACAAAAC............................................................................................................................................................................................. 22 0 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCTGCACATCGAAACAACA...................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GTTCTGCACATCGAAACAACA...................................................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGGTCCCTACCCTGATGTGGGTCT......................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCCGGTCCCTACCCTGATGTGGGTC.......................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GTTTCACAACACACTCAGACAA................................................................................................................................................................................................ 22 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGCACATCGAAACAACA...................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................CTGACGCCCGGTCCCTACCCT.................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................TCAGCACATCGAAACAACA...................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGACGCCCGGTCCCTACCCTG................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CCCATCGATTCATGAGTG......................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................GTGTCTGCACATCGAAACAACAATAGCT................................................................................................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CCGGTCCCTACCCTGATGTGGGTCT......................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCACATCGAAACAACAGTAGCT................................................................................................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTCTGCACATCGAAACAA........................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13036:564400-564650 - dvi_14082 CCGATTGTTTATTG---TTATCA-AT--TTGTGGTTCGTTTTGCACAGTGTTGTGTAAGTCTGTTTTGCCACA-----------------------GACGTG------TAGCTTTGTTGTAATCGA-TT--GTGCCGACTG-CGGG-CCAGGGATGGGACTACACCCAGAAAAGCCGATAAGCCAGCCTGCGTGGCCCAC-CGAGAAACAA-----------GAAGTTTCGTAACATTATGGCGCCCAATTAGGTCGCGCGGGGAGCGAAGTACTCATCCAGCAGCCCAGTATATGTCGCCGA
droKik1 scf7180000301335:7799-8006 + TAGATTGTTTACCTTTCTTGTCG-GTCTTTGTTTTTCGGTATTTATATTTTTTTTTG--------------------------------------------CGGATTCCAGATCAGCTGGGGTTTA-TG--GTGCGACCTA-CGGGCGAATGAGGAGAAATCCCTCCTGAGAGGAGA-CTGGCTAGCCGGCCTTGCCCCATC-GAGAAAAC-----------GACAGGTCGTAACATAATGGCGCCCAAATA--TCAAATAGGTAGCGAGGT-------------------------------
droFic1 scf7180000451615:10448-10471 + CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGT-----------------------------------------------------------CCAGATTATACTCCGGA
droEle1 scf7180000490242:8623-8829 - CTCACTGTTTGATG---TAAATATAC--TTTTGTTTTGTTTTG--------------------ATTTGCGATAGTGATGGCAATCGTCAAGTTAGTGACGTGAGACGTTCGATGAGTCGGAATCGA-TT--GTTCGGACTG-CAGG-GCATAGGGGCTACTCCGCCCTTAGAACTCC-GTGGCGAGCCGGCGCTGCCCCA-CTCGAAAGAT-----------GTAGTTCCGTAACAATATGGCGCCCAAT-----------------------------------------------------
droRho1 scf7180000773494:5498-5619 + TTG--------------------------------------------------------------------------------------------------------------TAATCGATGTTTAATGTTGTGGAATCTGTCGGG-ACATTGGGGGTACTCCGCCCTGAGGATTCC-GGAGCTAGCCGGGGCCGTCCC----AGGACGAT-----------GCAGTTCCATAACATTATGGCGCCCAA------------------------------------------------------
droTak1 scf7180000412950:39202-39335 - GA------------------------------------------------------------------------------------------------TGTGAGACTGCGTAGTCGTCGATATTTA-TG--TTGCGAGCTG-T--G-GCATTAGGGGGACTCCGCCTAGAGAGAAAC-TGAGCTAGC-GGCACTGCCAAA-G-GGAAAAAT----------AGCAGT-TCGTAACATAGTGGCGCCCAATTA---------------------------------------------------
droEug1 scf7180000409756:18213-18318 - A-----------------------------------------------------------------------------------------------------------------------------------------CTG-TGGG-ACAATGGTGGAACTCCGGCCTGGGGATTCTGGGGGCTAGCCGGAGCTGTCCC----GAAAAGATTCTATATCTTAGCAGTTCCGTAACATTATAGCGCCCAA------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCGATTGTTTATTG---TTATCA-AT--TTGTGGTTCGTTTTGCACAGTGTTGTGTAAGTCTGTTTTGCCACA-----------------------GACGTG------TAGCTTTGTTGTAATCGA-TT--GTGCCGACTG-CGGG-CCAGGGATGGGACTACACCCAGAAAAGCCGATAAGCCAGCCTGCGTGGCCCAC-CGAGAAACAA-----------GAAGTTTCGTAACATTATGGCGCCCAATTAGGTCGCGCGGGGAGCGAAGTACTCATCCAGCAGCCCAGTATATGTCGCCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGGG-............................................................................................................................................................2652.4012000000100000000000000000001101003002210000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGG..............................................................................................................................................................2551.608000010100000000000000000002000000001201000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGGG-C...........................................................................................................................................................2751.206000000000000100000000000100100000001100000000000000000000001000
.................................................................................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGTCGC...2750.603000000000000000000000000001000000001100000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGGG-CC..........................................................................................................................................................2850.603001000000000000000000000000100000001000000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-C................................................................................................................................................................2350.603000000000000000000000000010000001000100000000000000000000000000
...................................TCGTTTTGCACAGTGTTGTGTAAG....................................................................................................................................................................................................................................................2420.501000000000000000000000000000000000010000000000000000000000000000
................................................TGTTGTGTAAGTCTGTTTTGCCACA-----------------------...............................................................................................................................................................................................................2540.502000000000000000000000000000000001001000000000000000000000000000
.............................................CAGTGTTGTGTAAGTCTGTTT.............................................................................................................................................................................................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CGA-TT--GTGCCGACTG-CGGG-CC..........................................................................................................................................................2150.402001000001000000000000000000000000000000000000000000000000000000
................................................................TTTGCCACA-----------------------GACGTG------TAGCTT.............................................................................................................................................................................................2150.402000000001010000000000000000000000000000000000000000000000000000
............................................................................................................................GA-TT--GTGCCGACTG-CGGG-C...........................................................................................................................................................1950.402200000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGT..............................................................................................................................................................2550.402000000000000000000000000000000000001001000000000000000000000000
........................................................................................................................AATCGA-TT--GTGCCGACTG-CGG..............................................................................................................................................................2160.332000000000110000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TACTCATCCAGCAGCCCAGTATATGT......2680.252000000000000000000000000000000000110000000000000000000000000000
.................................................GTTGTGTAAGTCTGTTTTGCCACA-----------------------G..............................................................................................................................................................................................................2540.251000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................GCCGATAAGCCAGCCTGCGTGGCCCAC-......................................................................................................2740.251000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGT......2480.252000000000000000000000000000000000001100000000000000000000000000
.........TATTG---TTATCA-AT--TTGTGGTTCGT........................................................................................................................................................................................................................................................................2440.251000000000000000000000000000000010000000000000000000000000000000
.................................................GTTGTGTAAGTCTGTTTTGCCACA-----------------------GA.............................................................................................................................................................................................................2640.251000000000000000000000000000000000000100000000000000000000000000
..................................................TTGTGTAAGTCTGTTTTGCCACA-----------------------G..............................................................................................................................................................................................................2440.251000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................TAACATTATGGCGCCCAATTAGGTCG..............................................2650.201000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CG...............................................................................................................................................................2450.201000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TCGCGCGGGGAGCGAAGTACTCATCCAG.....................2850.201000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AACAA-----------GAAGTTTCGTAACATT.................................................................2150.201000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CCCAATTAGGTCGCGCGGGGA......................................2150.201000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAATTAGGTCGCGCGGGGAG.....................................2050.201001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AGCTTTGTTGTAATCGA-TT--GTGCCGACT...................................................................................................................................................................2850.201000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACCCAGAAAAGCCGATAAGCCAG.....................................................................................................................2350.201000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................CACCCAGAAAAGCCGATAAGCCAG.....................................................................................................................2450.201001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTCGTAACATTATGGCGCCCAATTAGGT................................................2850.201000000000000000000000000000100000000000000000000000000000000000
.................................................................TTGCCACA-----------------------GACGTG------TAGCTTT............................................................................................................................................................................................2150.201000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................GAAAAGCCGATAAGCCAGCCTGCGT..............................................................................................................2550.201000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAATTAGGTCGCGCGGGGAGC....................................2150.201000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................CTCATCCAGCAGCCCAGTATATGTC.....2550.201000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGACTG-CGGG-T...........................................................................................................................................................2750.201000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................GAAAAGCCGATAAGCCAGC....................................................................................................................1950.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAACATTATGGCGCCCAATTAGGT................................................2450.201000000000000000000000000000000000000010000000000000000000000000
.......................................................TAAGTCTGTTTTGCCACA-----------------------GACGTG------T..................................................................................................................................................................................................2550.201000000000000000000000000001000000000000000000000000000000000000
.......................................................TAAGTCTGTTTTGCCACA-----------------------GACGTG------TAGC...............................................................................................................................................................................................2850.201000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................TTGTAATCGA-TT--GTGCCGA.....................................................................................................................................................................1950.201000000000000000000000001000000000000000000000000000000000000000
............................................................................................................TAGCTTTGTTGTAATCGA-TT--G...........................................................................................................................................................................2150.201000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCGA-TT--GTGCCGACTG-CGGG-CCA.........................................................................................................................................................2350.201000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATTAGGTCGCGCGGGGAGCG...................................2050.201000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTATGGCGCCCAATTAGGTCG..............................................2150.201000000000100000000000000000000000000000000000000000000000000000
................................................................................................................TTTGTTGTAATCGA-TT--GTGC........................................................................................................................................................................2050.201000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................CACCCAGAAAAGCCGATAAGCCAGC....................................................................................................................2550.201001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTTGTAATCGA-TT--GTGCCGACTG-CGG..............................................................................................................................................................2750.201000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................AGAAAAGCCGATAAGCCAG.....................................................................................................................1950.201000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................AA-----------GAAGTTTCGTAACATTATG..............................................................2150.201000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................G-CCAGGGATGGGACTACACCCAGAAA...................................................................................................................................2670.141000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................GTACTCATCCAGCAGCCCAGT............2190.111000000000000000000000000000010000000000000000000000000000000000
......................................................................ACA-----------------------GACGTG------TAGCTTTGTTGT.......................................................................................................................................................................................21200.102000000000010000000000001000000000000000000000000000000000000000
...............................................GTGTTGTGTAAGTCTGTTTTGC..........................................................................................................................................................................................................................................22170.061000000000000000000000000000100000000000000000000000000000000000
..............................................AGTGTTGTGTAAGTCTGTTTTGC..........................................................................................................................................................................................................................................23170.061000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................GACTG-CGGG-CCAGGGATGGGACTTT............................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................TG-CGGG-CCAGGGATGGGACTACACCCAG......................................................................................................................................28200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................TG-CGGG-CCAGGGATGGGACTACACCCA.......................................................................................................................................27200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................ACA-----------------------GACGTG------TAGCTTTGTTG........................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................GG-CCAGGGATGGGACTACACCC........................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................TG-CGGG-CCAGGGATGGGACTACACCC........................................................................................................................................26200.051000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................GGG-CCAGGGATGGGACTA.............................................................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
................................................................................................GACGTG------TAGCTTTGTTGT.......................................................................................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
droKik1
TAGATTGTTTACCTTTCTTGTCG-GTCTTTGTTTTTCGGTATTTATATTTTTTTTTG--------------------------------------------CGGATTCCAGATCAGCTGGGGTTTA-TG--GTGCGACCTA-CGGGCGAATGAGGAGAAATCCCTCCTGAGAGGAGA-CTGGCTAGCCGGCCTTGCCCCATC-GAGAAAAC-----------GACAGGTCGTAACATAATGGCGCCCAAATA--TCAAATAGGTAGCGAGGT-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGT-----------------------------------------------------------CCAGATTATACTCCGGASizeHit CountTotal NormTotal
No Reads
droEle1
CTCACTGTTTGATG---TAAATATAC--TTTTGTTTTGTTTTG--------------------ATTTGCGATAGTGATGGCAATCGTCAAGTTAGTGACGTGAGACGTTCGATGAGTCGGAATCGA-TT--GTTCGGACTG-CAGG-GCATAGGGGCTACTCCGCCCTTAGAACTCC-GTGGCGAGCCGGCGCTGCCCCA-CTCGAAAGAT-----------GTAGTTCCGTAACAATATGGCGCCCAAT-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTG--------------------------------------------------------------------------------------------------------------TAATCGATGTTTAATGTTGTGGAATCTGTCGGG-ACATTGGGGGTACTCCGCCCTGAGGATTCC-GGAGCTAGCCGGGGCCGTCCC----AGGACGAT-----------GCAGTTCCATAACATTATGGCGCCCAA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GA------------------------------------------------------------------------------------------------TGTGAGACTGCGTAGTCGTCGATATTTA-TG--TTGCGAGCTG-T--G-GCATTAGGGGGACTCCGCCTAGAGAGAAAC-TGAGCTAGC-GGCACTGCCAAA-G-GGAAAAAT----------AGCAGT-TCGTAACATAGTGGCGCCCAATTA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A-----------------------------------------------------------------------------------------------------------------------------------------CTG-TGGG-ACAATGGTGGAACTCCGGCCTGGGGATTCTGGGGGCTAGCCGGAGCTGTCCC----GAAAAGATTCTATATCTTAGCAGTTCCGTAACATTATAGCGCCCAA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 06:38 PM