ID:

dvi_14070

 Coordinate:

scaffold_13036:267731-267881 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.2 -17.1 -17.1

Flybase annnotation

exon [dvir_GLEANR_14770:3]; CDS [Dvir\GJ14647-cds]; intron [Dvir\GJ14647-in]

No Repeatable elements found

mature
  1. dvi_14070  scaffold_13036:267798-267824 +
  2. scaffold_13036:278103-278129 +
star
  1. dvi_14070  scaffold_13036:267754-267779 +
  2. scaffold_13036:278059-278084 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAACGGGACAACTTGCGGTAAATAGCAATAAAACTGCTTGTGCCCAAGACAGCGCGAAAGCAGTGCAAAGCAGTGCAAACGCGTTAACTGCTTTATAAGCAGTGCACATAGTGCGAAGCAGTGTGGAATTTTAAAAAGCAGTGCAAATCTGAGTAAAACAGTGCAAGCAGCGCAAATAGAGCAGTGCGGTTCGTCAACCAGGTAAGCGGTTTGTGTCCGGGTTATCGCGTGGTGTTGCCGACGGAGGGCGC
*************************************************************************.((...........((((((.......(((...((((.(((...))).))))..))).....)))))).))*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060688
160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060654
160x9_ovaries_total
 M027
male body		 SRR060656
9x160_ovaries_total
 V053
head
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR1106727
larvae
 SRR060679
140x9_testes_total
 SRR1106729
mixed whole adult body
 SRR060683
160_testes_total
 V047
embryo
..........................................................................................................................................CAGTGCAAATCTGATTAGA.............................................................................................. 19 2 3 3.00 9 0 0 0 1 1 0 2 0 0 2 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCCGGG.............................. 27 0 4 1.75 7 3 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGCAGTGC........................................................................................................... 27 0 2 1.50 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CAGTGTGGAATTTTAAAAAGCAGTGC........................................................................................................... 26 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GTGGAATTTTAAAAAGCAGTGCAAATT...................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGCAGT............................................................................................................. 25 0 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCTGAGTAAAACAGTGCAAGCAGCG............................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAATTTTAAAAAGCAGTGCAAAT....................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGC................................................................................................................ 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TGCAAACGCGTTAACTGCTTTATAAG........................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CAGTGTGGAATTTTAAAAAGCAGTGCA.......................................................................................................... 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAATCTGAGTAAAACAGTGC....................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCC................................. 24 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TAAATAGCAATAAAACTGCATGTGCC............................................................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGCACATAGTGCGAAGCAGTGTG.............................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGTGCGAAGCAGTGTGGAATTTTAA..................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TGTGCAAAGCAGTGCAAACGCGTTAAC................................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGTGCGAATCTGAGTAAAACAG.......................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGTGCAAATCTGATTAGA.............................................................................................. 18 2 20 0.50 10 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 1
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTC.................................. 23 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCAGGTAAGCGGTTTGTGTC.................................. 20 0 6 0.33 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAATTTTAAAAAGCAGTGCAA......................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GGCAGCAGTGTGGAATTTT....................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CAGTGCAAATCTGATTAG............................................................................................... 18 2 7 0.29 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........AACTTGCGGTAAATAGCAATAAAACTGC...................................................................................................................................................................................................................... 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCCGGTA............................. 28 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCCCGG.............................. 27 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCCG................................ 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGTCCGG............................... 26 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGTGT................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATCGCGTGGTGTTGCCGACGGAGGGC.. 27 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTGT..................................... 20 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CAGTGCAAATCTGATTAGAT............................................................................................. 20 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGCGGTTCGTCAACCAGGTA............................................... 20 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTGGTGTTGCCGACGGAGGGC.. 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGCTTGTGCCCAAGACAGCGCGAAA................................................................................................................................................................................................ 25 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGTCCGGGTTATCGCGTGGT.................. 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCCGGGTTATCGCGTGGTG................. 19 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACAGTGCAAGCAGCGCAAATAGAGCA.................................................................... 28 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CCCAAGACAGCGCGAAAGCAGTGCAAA...................................................................................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTTATAAGCAGTGCACATAGTGCGAAG..................................................................................................................................... 27 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCAAGCAGCGCAAATAGAGCAG................................................................... 22 0 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTGCGGTTCGTCAACCAGG................................................. 20 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTGCGGTTCGTCAACCACG................................................. 20 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CAGCGCAAATAGAGCAGTGCG............................................................... 21 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCGGTTTGTGTAGTGGTTATC......................... 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAGAGCAGTGTGGTTCGTCAACCAGC................................................. 27 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GAGGAGTGCGGTTCTT......................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................................CGCAAATAGAGCAGTGCGGTTCGTCA....................................................... 26 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAGAGCAGTGCGGTTCGTCA....................................................... 21 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TAGAGCAGTGTGGTTCGTCAACCAG.................................................. 25 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TAGGACATCGCGAAAGCAGTG.......................................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGCAGTGCACATAGTGCGAA...................................................................................................................................... 21 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAATAGAGCAGTGCGGTTCGT......................................................... 21 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCAGTGCAAATCTGATTAGA.............................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................AAAACTGCTGGTGCC............................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................CTTGTGCGCGAGATAGCGCG................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCAGTGCAAATCTGATTAG............................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................AAAGAGCAGTGAAAATCT..................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAAGAGGTGTCTGTCCGGGT............................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................AGATAGGAACAAAACTGCT..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATTGCCCTGTTGAACGCCATTTATCGTTATTTTGACGAACACGGGTTCTGTCGCGCTTTCGTCACGTTTCGTCACGTTTGCGCAATTGACGAAATATTCGTCACGTGTATCACGCTTCGTCACACCTTAAAATTTTTCGTCACGTTTAGACTCATTTTGTCACGTTCGTCGCGTTTATCTCGTCACGCCAAGCAGTTGGTCCATTCGCCAAACACAGGCCCAATAGCGCACCACAACGGCTGCCTCCCGCG
***********************************************************************************************************.((...........((((((.......(((...((((.(((...))).))))..))).....)))))).))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060673
9_ovaries_total
 M028
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
..................................................................................................CGTCACGTGTATCACGCTTCGTCACACCT............................................................................................................................ 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CACGTGTATCACGCTTCGTCACACCT............................................................................................................................ 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CACCTTAAAATTTTTCGTC.............................................................................................................. 19 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCACGCTTCGTCACACCTTAAAAT...................................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGTATCACGCTTCGTCACACCTTAAAAT...................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ACGCTTCGTCACACCTTAAAA....................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CGTCACACCTTAAAATTTTTCGTC.............................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GTTTCGTCACGTTTAGACTCATTT.............................................................................................. 24 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TATCACGCTTCGTCACACCTTAAAAT...................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................ATCGTTATTTTGACGAACACGGGTTCTA......................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAATTTTTCGTCACGTTTAGACTCATT............................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CACGTGTATCACGCTTCGTCACACCTT........................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGTCACGCCAAGCAGTTGGTCCAT............................................... 24 0 5 0.40 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCCATTCGCCAAACACAGGCCCAATA.......................... 28 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................CGTCACACCTTAAAATTTTTTGTCA............................................................................................................. 25 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........GTTGAACGCCATTTATCGTTATTTTG......................................................................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................CGCACCACAACGGCTGCCTCCCGCG 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TCGTCACGCCAAGCAGTTGGTCCAT............................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGGCCCAATAGCGCACCACAAC.............. 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTCACGTTCGTCGCGTTTATCTCG..................................................................... 25 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTGTCACGTTCGTCGCGTTTATC........................................................................ 24 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGACGAAATATTCGTCACGTG................................................................................................................................................ 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCACGTTCGTCGCGTTTATCT....................................................................... 21 0 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......CTGTTGGACGCCATTTATCGT................................................................................................................................................................................................................................ 21 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................TCGTCGCGTTTATCTCGTCACGCCAAG........................................................... 27 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
ATTGCCCTGTTGAACGCCATTTATCGT................................................................................................................................................................................................................................ 27 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GAAATATTCGTCACGTGTATCACGCTT...................................................................................................................................... 27 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGGTCCATGCGCCTAACAA.................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................GTCGCGTTTATCTCGTCACGC............................................................... 21 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....CCCTGTTGAACGCCATTTAT................................................................................................................................................................................................................................... 20 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTTTATCTCGTCACGCCAAGCAGTT...................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAACACGGGTTCTGTCGCGCTT................................................................................................................................................................................................. 22 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................GCGTTTATCTCGTCACAC............................................................... 18 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13036:267681-267931 + dvi_14070 TAACGGGACAACTTGCGGTAAATAGCAATAAAACTGCTTGTGCCCAAGACAGCGCGAAAGCAGTGCAAAGCAGTGCAAACGCGTTAACTGCTTTATAAGCAGTGCACATAGTGCGAAGCAGTGTGGAATTTTAAAAAGCAGTGCAAATCTGAGTAAAACAGTGCAAGCAGCGCAAATAGAGCAGTGCGGTTCGTCAACCAGGTAAGCGGTTTG---------TGTCCG----------GGTTATCGCGTGGTGTTGCCGACGGAGG------GCGC
droWil2 scf2_1100000004930:91970-91990 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------CGTGGTGTCGGCCGCGGAGT----------
droAna3 scaffold_13089:898706-898725 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------CGTCGCGGTCGAAGT------CCGC
droRho1 scf7180000770933:902-990 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCGTGTCCCGGGTAAGCGGTTCGGAGAGCGACTGCTCGCTGGCTAGTAGGCTAGCGAGTGGTGCCGCCCGCGGAACCGGTAGAGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAACGGGACAACTTGCGGTAAATAGCAATAAAACTGCTTGTGCCCAAGACAGCGCGAAAGCAGTGCAAAGCAGTGCAAACGCGTTAACTGCTTTATAAGCAGTGCACATAGTGCGAAGCAGTGTGGAATTTTAAAAAGCAGTGCAAATCTGAGTAAAACAGTGCAAGCAGCGCAAATAGAGCAGTGCGGTTCGTCAACCAGGTAAGCGGTTTG---------TGTCCG----------GGTTATCGCGTGGTGTTGCCGACGGAGG------GCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTCCG----------GG....................................2741.757000000000000000000000000000200000002300000000000000000000000000
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGCAGTGC....................................................................................................................................2721.503000000000000000000000000001000000010100000000000000000000000000
......................................................................................................................CAGTGTGGAATTTTAAAAAGCAGTGC....................................................................................................................................2621.002000000000000000000000000000100000000100000000000000000000000000
..........................................................................................................................GTGGAATTTTAAAAAGCAGTGCAAATT...............................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGCAGT......................................................................................................................................2521.002000000000000000000000000000100000010000000000000000000000000000
...................................................................................................................................................TCTGAGTAAAACAGTGCAAGCAGCG........................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGGAATTTTAAAAAGCAGTGCAAAT................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................GCAGTGTGGAATTTTAAAAAGC.........................................................................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................TGCAAACGCGTTAACTGCTTTATAAG.................................................................................................................................................................................2620.501000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................CAGTGTGGAATTTTAAAAAGCAGTGCA...................................................................................................................................2720.501000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................CAAATCTGAGTAAAACAGTGC................................................................................................................2120.501000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTCC.................................................2440.502000000000000000000000000000100000000100000000000000000000000000
......................................................................................................TGCACATAGTGCGAAGCAGTGTG.......................................................................................................................................................2320.501000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................AGTGCGAAGCAGTGTGGAATTTTAA..............................................................................................................................................2520.501000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTC..................................................2350.402000000000000000000000000000100000000100000000000000000000000000
.....................................................................................................................................................................................................CCAGGTAAGCGGTTTG---------TGTC..................................................2060.332000000100000000000000000000000000000100000000000000000000000000
...........................................................................................................................TGGAATTTTAAAAAGCAGTGCAA..................................................................................................................................2330.331000000000000000000000000000000000000100000000000000000000000000
.........AACTTGCGGTAAATAGCAATAAAACTGC...............................................................................................................................................................................................................................................2840.251001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTCCG----------GTA...................................2840.251000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTCCG----------......................................2540.251000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGTCCG----------G.....................................2640.251000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------TGT...................................................2250.201000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................TATCGCGTGGTGTTGCCGACGGAGG------GC..2750.201000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACCAGGTAAGCGGTTTG---------T.....................................................2050.201000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................TGCGGTTCGTCAACCAGGTA........................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GTGGTGTTGCCGACGGAGG------GC..2150.201000000000000000000000000000000000000001000000000000000000000000
..................................TGCTTGTGCCCAAGACAGCGCGAAA.........................................................................................................................................................................................................................2560.171000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................G---------TGTCCG----------GGTTATCGCGTGGT........................2160.171000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................TCCG----------GGTTATCGCGTGGTG.......................1960.171000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................AAACAGTGCAAGCAGCGCAAATAGAGCA.............................................................................................2870.141001000000000000000000000000000000000000000000000000000000000000
..........................................CCCAAGACAGCGCGAAAGCAGTGCAAA...............................................................................................................................................................................................................2770.141000000000000000000000000000000000000100000000000000000000000000
...........................................................................................TTTATAAGCAGTGCACATAGTGCGAAG..............................................................................................................................................................2770.141000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................GCAAGCAGCGCAAATAGAGCAG............................................................................................2280.131000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AGTGCGGTTCGTCAACCAGG..........................................................................2080.131000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................CAGCGCAAATAGAGCAGTGCG........................................................................................2190.111000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CGCAAATAGAGCAGTGCGGTTCGTCA................................................................................26100.101001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ATAGAGCAGTGCGGTTCGTCA................................................................................21100.101000000000000000000000000100000000000000000000000000000000000000
................................................................................................AAGCAGTGCACATAGTGCGAA...............................................................................................................................................................21100.101000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AAATAGAGCAGTGCGGTTCGT..................................................................................21110.091000000000000000000000000000000000010000000000000000000000000000
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------CGTGGTGTCGGCCGCGGAGT----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................G----------------------------------------------------------CGTGGTGTCGGCCGCGGAGT----------2120.50101000
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------CGTCGCGGTCGAAGT------CCGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCGTGTCCCGGGTAAGCGGTTCGGAGAGCGACTGCTCGCTGGCTAGTAGGCTAGCGAGTGGTGCCGCCCGCGGAACCGGTAGAGGTSizeHit CountTotal NormTotal
No Reads

Generated: 05/16/2015 at 08:07 PM