ID:

dvi_14046

 Coordinate:

scaffold_12970:11704328-11704478 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.0 -2.9 -2.8 -2.6

Flybase annnotation

exon [dvir_GLEANR_4431:3]; CDS [Dvir\GJ19544-cds]; intron [Dvir\GJ19544-in]

Repeatable elements

NameClassFamilyStrand
(CAAAAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATACATAAACCAATTAAAATACAACAAATAAACAACAAAATCGCAACAAAAAATATGTATGCAAAAACCAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAACAAAAATAAAACAATAACAAAATAATTGATAAAAATGTTAAACAATTGATACCAAAAAAACAAACTCGCCACTGCGTCACGCAACGTTGCAGCGCGGAGCACATCGGCAATATCCGTCCCAACGAGCCCATCTATCGTCCAG
************************************************************************.........................................................................((........(((.................(((....)))))).))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060671
9x160_males_carcasses_total
 M061
embryo
 GSM1528803
follicle cells		 M028
head
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
........................................................................AAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAA............................................................................................................................................... 36 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACA................................................................................................................................................. 36 1 20 1.00 20 16 4 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAACAAAAAAAAAACAAAAACAAAAACAAAA.............................................................................................................................................. 36 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAA.............................................................................................................................................. 36 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................AAAAAAAAAAAAAAACAAAAACACAAACAAACCAAA.......................................................................................................................................... 36 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAAAAAAAAAAAAACAAAAACAAAAAGAAAACAA........................................................................................................................................... 36 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACACAAACAAAAACA................................................................................................................................................. 36 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAAAAAGAACAAAGACAAAAACAA................................................................................................................................................ 36 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................AAACCCAAAAAAAAAAAAAAAACAACACAAAAACA....................................................................................................................................................... 35 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAACTCGCCACTGCGTCACGC............................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................AAAAAAAAAAACAAACGAAAACAAAAACAAGACAAA.......................................................................................................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................AAAAAAAAAAAAACACAAACAAAAACAAACCAAAAA........................................................................................................................................ 36 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AAGAACCAAAAAAAAAAAAAAAAAAAAAACAAAAAA........................................................................................................................................................ 36 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAACACAAACAAAAACAAA............................................................................................................................................... 36 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................AAAAAAAAAAAAAAAACAACAACACAACCAAAACAA........................................................................................................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................CCCAAAACAAAAAAAAAAAAACAAACAAAAACAAAA.................................................................................................................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAACACAAAAACAAAAACAA................................................................................................................................................ 35 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAACAAAAAAAAAAAAAAACAAAAACAAAAACAAA............................................................................................................................................... 36 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACAACAACAAAAACA................................................................................................................................................. 36 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAA................................................................................................................................................ 36 1 20 0.45 9 8 1 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACAA................................................................................................................................................ 36 1 20 0.45 9 7 2 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACA................................................................................................................................................. 36 1 20 0.35 7 6 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAAAAAAAAAAAAACAAAAACACAAACCAACCAA........................................................................................................................................... 36 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAACAAAAAAAAACACAAACAAAAACA................................................................................................................................................. 35 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAAAAAAAAAAACAAACAAACACAAAAACAAAACA............................................................................................................................................ 36 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AAAATGTTAGACCATTGAT............................................................................................ 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
................................................................AAACCCAAAAAAAAAAAAAACAAAACAACAAAAACA....................................................................................................................................................... 36 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAACACAAAAAAAAACAAAAACAAACACAAAA.............................................................................................................................................. 36 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAGAAGAAAAAAAACAAAAACAAAAACAA................................................................................................................................................ 36 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAACAAACAAAAACAAACACAAAA.............................................................................................................................................. 36 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................AAAAAAAAAAAAAAAGCAAAAACCAAAACAAACCA............................................................................................................................................ 35 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAAA............................................................................................................................................... 36 1 19 0.32 6 6 0 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAAA................................................................................................................................................. 36 1 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0
........................................................................GAAAAAAAAAAAAAAAAAAAGAAAAACAAAAACAAA............................................................................................................................................... 36 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AAAAAAGAAAAAAACAAAAACAAAAACAACACAAA.......................................................................................................................................... 35 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAGAAAACAAAAACAAGAACAA................................................................................................................................................ 35 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................AAAAAAAAAAAAAAACAAACACAAATAGAAAACAAA.......................................................................................................................................... 36 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAACATAAAGA................................................................................................................................................. 36 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAGAAAATAAAAAAAAAAAAACAAAAACACAAACAA................................................................................................................................................ 36 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAAAAAAAAAAAAAAACAAAAACAAAAACAAAAAA............................................................................................................................................ 36 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACAAA............................................................................................................................................... 36 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAACAAAAAAACAACAAAAACACAAACAAAA.............................................................................................................................................. 36 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAACAACAAAAACAAAAACAC................................................................................................................................................ 35 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAACCAACACAAAAACAAA............................................................................................................................................... 36 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAACAACA.............................................................................................................................................. 36 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AAAAAAAAAAAAAAACAAAAACCAAACACAAATAA..................................................................................................................................... 35 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................AAGAAAAAAAAAAAAACAAAAACAAAAACAAAAAAA........................................................................................................................................... 36 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAACAAAAAAAAGCAAAAACAAAAGCAA................................................................................................................................................ 36 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAAAAAAAACAACAACAAACACAA................................................................................................................................................ 36 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................ACAAAAAAAAAAACAAAAAAACAAAACCAAAAACA................................................................................................................................................. 35 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CTCGCCACTGGGTGACGC............................................................ 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
............................................................TGCAAAAACCAAGAAAAAAAA.......................................................................................................................................................................... 21 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACAAAACCAAAACCA................................................................................................................................................. 36 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAAATAAAAAAAAAAAAAAAACCAAACACAAAAACA................................................................................................................................................. 36 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................CAAAAAAAAAAAAAAAAAACAAAAACACAAACAAAA.............................................................................................................................................. 36 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................AAAAAAAAAAAAAAACAACAACAAAAACAACACACA.......................................................................................................................................... 36 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................AAAAAAAAAAAAAAAACAAAAACACAAAAAAAACGA........................................................................................................................................... 36 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAAAA.............................................................................................................................................. 36 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAACAAAAAAAAAAACAAAAACAAACACAACA.............................................................................................................................................. 36 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACAA................................................................................................................................................ 35 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAACAAAAACAAAAACATAAA............................................................................................................................................. 36 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAATAAAAAAATAATAACAAAAACAAA............................................................................................................................................... 36 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAACACACAA.............................................................................................................................................. 36 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAACAACAAAAACACACACAAAA.............................................................................................................................................. 36 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
................................................................AAAAACAAAAAAGAAAAAAAAAACAAAACAAAAACA....................................................................................................................................................... 36 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................CAAAAAAAAAAGAAAAAGAAAAAACAAAAACAAAAA................................................................................................................................................... 36 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAGAAAAAACAAAAACAAACCCA................................................................................................................................................. 35 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................AAAAAAAAAATAAAAAAACAAAAACCAAAACAAAAA............................................................................................................................................. 36 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAAAAAAAAAAAACCAAAACAATACCAA................................................................................................................................................ 35 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AAAAAAAACTAGAACAAAAACAAACCA............................................................................................................................................ 27 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................ACAAAAAAAAAAAAAAAAAAAAAAACAAAAACCAAA.................................................................................................................................................... 36 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................AAACAAAAACAACAAAAAAAAAAAAAACAAAAACAA...................................................................................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................CCAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................AAAGAATTGGTCCCAAAAAAA.................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................AAAAAAAAAAAAAAAAAAAAAAC.............................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAAAAAAATAAAAAAACAAAAAAAAAAACA................................................................................................................................................. 36 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAAA............................................................................................................................................... 35 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAAAAACAAAAAAAAACAAAAAAAAAAACAAA............................................................................................................................................... 36 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAAAAAAAACAAAAAAAAAAAACAAAAAAAAAAACA................................................................................................................................................. 36 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACA................................................................................................................................................. 35 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAATAAAAAACAAAAAAAAAAACAAAA.............................................................................................................................................. 36 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................CAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................ACCAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................AAAAAAAAAAAAAAAAAAAAAACACAAACAAACGCA................................................................................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................AAACCAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................AAAAAAAAAAAAAAAAAAAACAAAGAAAAAAACAAA............................................................................................................................................... 36 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAATAGACAA.............................................................................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTATGTATTTGGTTAATTTTATGTTGTTTATTTGTTGTTTTAGCGTTGTTTTTTATACATACGTTTTTGGTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTGTTTTTATTTTGTTATTGTTTTATTAACTATTTTTACAATTTGTTAACTATGGTTTTTTTGTTTGAGCGGTGACGCAGTGCGTTGCAACGTCGCGCCTCGTGTAGCCGTTATAGGCAGGGTTGCTCGGGTAGATAGCAGGTC
************************************************************.........................................................................((........(((.................(((....)))))).))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 V053
head
 SRR060689
160x9_testes_total
 V047
embryo
 SRR060678
9x140_testes_total
 SRR060677
Argx9_ovaries_total
 V116
male body
............................................................................................................................................................................................GCGTTGCAAGGTGGCGCCCCGT......................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TTGTTAGAGGGGTGAGGCAGT............................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................TGTGTGTGTTTTTGTTTTGTTTTTAT...................................................................................................................................... 26 2 6 0.33 2 0 0 1 0 0 1 0
...TCTATTTGGTTAATTTTGTG.................................................................................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 1 0 0 0
...........................................................................................TGTTTTTGTTTTTGTTTTGTTTTT........................................................................................................................................ 24 0 10 0.10 1 0 0 0 0 1 0 0
........................................................................................TTTTGTTTTTGTTTTTGTTTTG............................................................................................................................................. 22 0 20 0.10 2 0 0 0 0 2 0 0
.........................................................................................TTTGTTTTTGTTTTTGTTTTGTTTT......................................................................................................................................... 25 0 13 0.08 1 0 0 1 0 0 0 0
......ATTTGGTGAATTTTTTGT................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0
...........................................................................................TGTTTTTGTTTTTGTTTT.............................................................................................................................................. 18 0 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................TGTTTTTGTTTTTGTTTTGTT........................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:11704278-11704528 + dvi_14046 AATACAT-------------------------AAACCA----------------------------------------------ATTAAAATACAACAAATAAACAACAAAA-TCGCAACAAAA-------------AATAT--------------------------------GT--------------------ATGCAAAAACCAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAACAAAAA----------------------------------------------------------------TAAA-ACAATAACA-----AAATAATTGAT----AAAAATGTTAAACAATTGATACCAAAAAAA-CAAACTCGCCACTG----CG-------------------------TC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAC--------------------ATCGGC--------------AATAT--C---------------C------GTCCCAACGAGCCCATCTATCGTCCAG----------------------------------------------------------------------------------------------------
droMoj3 scaffold_6308:2428051-2428298 + GAAAAAA----------------A---------AAAAAACAAA--------AATACAAAAAAAAAACAAAAAAAAACTAAACCGATTAAAAACCAACAAATA-----------A----------------------------AA-AAAATGC-----------------------------------AACA-----------------------------------------------------------------------------AAAACTG-------------AAAAAAAAA-ACA-----CAAACAAACATAAA-CGAATAACA-----A-ATAATTGATTAAAAAAACTGTTAAACAA-------------ACCAAACCTCGACCCTG----CG-------------------------TC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAA--ACCAAAGA---------------------------C--GAGATGCG---------------AGCCG--GCAGCAGCGAGTCCGTCTATCGTCCGA----------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:3674744-3674947 + AAAACAT-------------------------AAACCAACAATAAAA--------------------AAAA------------------AT--------------------TTT----------------------------CA-AATCAAA-----------------------------------AAAACAAATTTACGAAAAAAATAAA-AATAAA------------------------------------------------------------------------------------------------------ACAATAATT-----AAATAATTGAA----AAAAATGTTAAACAATTGATATGAAA--AC-CAAACTCAAAACTG----CG-------------------------AC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAC--------------------ATC---------AACCATACCCAA-------------------------CGACCAAACGATCCCGTCTATCGACCCA----------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:7901620-7901811 - AAAAAAA----------------AAAAAACGTAA---------CAA----------------------------------------------------------------------------AAAACAACAACAACAAATATGAAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA----CAAAAAGTTTAACAATTGATACGAAA--ATACGAACTCGCCACTGT-GGTG-------------------------GCCCTTCC----CCC-TCCCCCCTACG---ACCACGT-------------------------------TT----GCAGAGATGAACAC----------------------------------ACGATCAATCA--G---------------CAATCGCATCCGAATGAGCCAGTCTATCGACCAA----------------------------------------------------------------------------------------------------
dp5 XL_group1a:4030371-4030517 - AAATCCC-------------------------CCAATC---------------------------------------------AA----CAT-C-----AACAACAACAACA-ACTCAACAACA-------------ACTAT--------------------------------GA--------------------CTACAACAACGAAAAAAAAATAAAAAAAAAAACAAAAAACAAAACCGAAACTCATG----------------------------------------------------------------TTAA-CC-----------------------------GTATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAATAAAAACCAAAAAATCAATTTC----------------------------------------------------------------------------------------------------
droPer2 scaffold_15:1686069-1686159 + AATACGA----------------AACGAAACAAA---------AAAAAAATACCAC----ACAAAACT----TTTGTTAA-------A-AA--------------------TAC----------------------------CA------------------------AAAAAAAAACAAAA----------------------------------C------------------------------AAAAAAAAA-----------------------------------------------------------------ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AA--------------AATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302592:277695-277972 + AAAAAATATAATAATAAAAACACTGAAAACCTAT---------AAA---------------CAA-----------------------A-AA-------------------TA-CATCAACTAAA----------------------------------------------------ATAATA----------------------------------A------------------------------CAAAAAAAATCGAAATAA-CAAAACATAAAAACAAATGTAATTA-ATAATGAAA-----CCAACCAT-----------CATCA-----AATGAATTGTATACAAA--------------------------------ATGTGCCACAAATCACGAACCACAAACCTCAAACCTCAAACGAACCTCGCAACAATC-AC----ATCC----------------A-----AAA-----------A-ACC----AC-GA--------ACAA--ATCAAAGGCCGGAGCAGCAGC---------AACCTTATCC--------------------------------CGGCGATCCCGTTTACCGTCCCA----------------------------------------------------------------------------------------------------
droFic1 scf7180000454073:2906960-2907245 - AAAACCT-------------------------CATAAAA-------A---------------------------------------------------------AA-----ATT----------------------------GA-AATCAAAAAAATGAAAAACCCA----------------------------------AAAACTGAATA-TATAAA------A----------------------------------CAAAAAAATCAACTGCAAAAAATTATAATA--ATAACCAAA-----TC-------GTAAACCG--TAACAAACCA-----ATTGTATACTAA--------------------------------AATCGCCGATGG-TGTG-------------------------ATCCACCC----GCC-ACCTTCTTTT-------AAAACAAACA-----AAAAACAAAAACAAAA-TGTACGATAAA--------AAAC--ACCAAAGGCCGGAGCAACTGGAGCAAC---AACCATTCCCCAA--CA---------------ACAACCACAGCAGTGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------
droEle1 scf7180000491013:906874-907141 - AAAACAT----------------TAAAAACCTCT---------AAA---------------AA-------------------------------------------------------------AAAAAC-------------------AAAAAAACGAAAAATTTAAAAATATAAATAAAA------------------------------------------------------------------------------CAAAA-AAACAACTCCTAAACAATGCCACA--AAAATAAAA-----CCGACGAAT-------G--TAACCAACCA-----ATTGTATACGTA--------------------------------AATCGCCACTGG-TGTG-------------------------CACCACCC----ACCCAACTTACATCATCT---ACA----AAA-------AA----------A--------AA-AA--------AAAAACCATAAAGGCCGGAGCAACTGCAGCAACAACAACCATTCCCCAA--CA---------------AAAG---CAATCAACAGCCCATATATCGACCGA----------------------------------------------------------------------------------------------------
droRho1 scf7180000780080:68877-69122 + TAAACAT----------------TGAAAACCTAA---------AAAA---------------------------------------------------------AA-----ATT----------------------------GA-AATCTAA---------AATC---AAATATAAATAAAA------------------------------------------------------------------------------CAAAA---ACAACTGCTAAAAAATTCCTGA--ATAACGAAA-----CCAACAAAC-------G--TAACGAAACA------ATGTTTACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCC----ACC-ACCTTCCATCA------ACA-----AA-----AAA--------------------A--AC--------AAAA--CTTAAAGGCCGGAGCAACTGCAGCAACAGAAACCATTCCAAAG--CA---------------------ACAGCAATGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------
droBia1 scf7180000302187:1417449-1417689 + TGAACAT----------------TGAAAACCTCT---------AAA---------------CAAACCTA---------------------------------------------------------AAAC-------------------TATAAAACAAAAAATCCA-AAACATAAATAAAA------------------------------------------------------------------------------CAAAA---ACAACTG-------------AA--AAAAC----GAAAACCAACAAAT-------G--TAACGAAACAA----ATTATATACTAA--------------------------------AATCGCCCACGG-TGTG-------------------------TTCCACCC----GCC-ACCTCCACCC-------GCA----AAA-------A-----------A-ACA----AT-TC--------GAAA--TCCAAAGGCCGGAGCAACAGCAGC------AACCATTCCCC--------------------------AACCAAAACGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------
droTak1 scf7180000415872:647261-647517 - AAAACCT-------------------------CT---------AAA---------------C--------------------CGA----AAT-T------------------------------AAAAAC-------------------GATAAAACGAAAAACCGA-AAATATATTTAAAATAAAAAAAA-----------------------------------------------------------------------------CCAAC-------------CACA--AAATC----GAAATCCAACAAAC-------G--TAACCAAACA-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCC----ACC-ACCTTCGTCC-------ACA----AAA-----AAA-----------A-ACA----AT-GA--------AAAA--TCTAAAGGCCGGAGCAACAGCAGC------AACAATTCCCCAA--CAACAACAACAATAGCC------ACCCAAACGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------
droEug1 scf7180000409509:914889-915160 + AACATTG------------------AAAACCTCT---------AAA---------------AAA---------------------------------------AAAAAAATT-TTTTAACTAAA-------------AACAA--------------------------------AA--------------------TTCCAAAAACTATAAAAAATAAA-------------------------------------TTTAAAAAA-AAATATCTACAAAAAACTGCTACCA-AAAAT----CAAATCCAACGAAC-------C--TAACAAAACG--------ATATACTAA--------------------------------AAACGCCAATGG-TGTG-------------------------TTCCACCC----ACC-GCCTTCCATCA------ACT-----GA-----AAA-----------A-TCA----AT-TT--------AAAA--ACTAAAGGCCGGAGCATCAGTACC------------TCCCCTT--CAGCCATGAC------A------GCCAGAATGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------
dm3 chrX:9969602-9969855 - AAAACCT-------------------------GAAAAAA-AAT--------AATATACATACAATATCAAA------------------AA--------------------TAT----------------------------AAAAATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAACTAAT-AAA-----TCAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACTTTAAAAAAAAAAAAAAACAAAAAACAAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGC------------AACAATTCCATGA--C---------------CGCCTGAACCACAATGATGCCATATATCGACCGT----------------------------------------------------------------------------------------------------
droSim2 x:9507405-9507652 - AAAACCT-------------------------GAAAAAATAAT--------AATATACATACAATACCAAA------------------AA--------------------TAT----------------------------AA-AATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAAATAAT-AAA-----TAAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACT----AAA-----AAAAACA------AAC-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGCAGAAGCAGC---AACAGTTCCATGG--C---------------CGCCCGAACCACGATGATGCCATTTATCGACCGT----------------------------------------------------------------------------------------------------
droSec2 scaffold_15:685626-685874 - AAAACCT-------------------------GAAAAAATAAT--------AATATACATACAATACCAAA------------------AA--------------------TAT----------------------------GA-AATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAAATAAT-AAA-----TAAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACT----AAA----AAAAAACA------AAA-CA----A--AC--------CAAA--ACTAAAGGCCGGAGCAGCAGAAGCAGC---AACAGTTCCATGG--C---------------CGCCCGAACCACGATGATGCCATTTATCGACCGT----------------------------------------------------------------------------------------------------
droYak3 X:18559054-18559384 - AATATAC----------------A---------AAAAT---------------------------ATT-AA------------------AA--------------------TAT----------------------------GA-AATAAAC-----------------------------------CAAACAAAT---------------------------------------------------------------------------------------TGCCGCA--ATAAT-AAA-----TCAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCT----ACC-ACCTTCCATC-------ACTGAAAAAA----AAAAAACA------AAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGCAACAGCAGC---AACAATTCCCCGG--CA---------------ACCGCAACCAAAATGAACCCATCTATCGACCGATGAAGGTATTCGACTATTCCAATAACCCAACGGCCGCCAAGGTGATCGATTATGGCCACAAGTCGGGTGATGGCAATCCCATCGATGGGCCTTCCGGCGG
droEre2 scaffold_4690:5137778-5138013 + AAAACCT-------------------------AAAAAAA-AAT--------AATAT----ACAATACCAAA------------------AA--------------------TAT----------------------------TA-CATAAAC-----------------------------------CAAACAAAT---------------------------------------------------------------------------------------TGCCGCA--AAAAT-AAA-----TCAACAAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCT----ACC-ACCTTCCATC-------ACTGAAAAAA-----------A------AAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAACAGCGGA------AACAATTCAATGG--CA---------------ACCGCAACCAGAATGAACCCATCTATCGACCGA----------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATACAT-------------------------AAACCA----------------------------------------------ATTAAAATACAACAAATAAACAACAAAA-TCGCAACAAAA-------------AATAT--------------------------------GT--------------------ATGCAAAAACCAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAACAAAAA----------------------------------------------------------------TAAA-ACAATAACA-----AAATAATTGAT----AAAAATGTTAAACAATTGATACCAAAAAAA-CAAACTCGCCACTG----CG-------------------------TC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAC--------------------ATCGGC--------------AATAT--C---------------C------GTCCCAACGAGCCCATCTATCGTCCAG----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................AAACTCGCCACTG----CG-------------------------TC--ACGC.....................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................CCAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................ACCAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAACCAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAAAAAA----------------A---------AAAAAACAAA--------AATACAAAAAAAAAACAAAAAAAAACTAAACCGATTAAAAACCAACAAATA-----------A----------------------------AA-AAAATGC-----------------------------------AACA-----------------------------------------------------------------------------AAAACTG-------------AAAAAAAAA-ACA-----CAAACAAACATAAA-CGAATAACA-----A-ATAATTGATTAAAAAAACTGTTAAACAA-------------ACCAAACCTCGACCCTG----CG-------------------------TC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAA--ACCAAAGA---------------------------C--GAGATGCG---------------AGCCG--GCAGCAGCGAGTCCGTCTATCGTCCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------C--GAGATGCG---------------AGCCG--GCAGCA.........................................................................................................................2211.001000001
droGri2
AAAACAT-------------------------AAACCAACAATAAAA--------------------AAAA------------------AT--------------------TTT----------------------------CA-AATCAAA-----------------------------------AAAACAAATTTACGAAAAAAATAAA-AATAAA------------------------------------------------------------------------------------------------------ACAATAATT-----AAATAATTGAA----AAAAATGTTAAACAATTGATATGAAA--AC-CAAACTCAAAACTG----CG-------------------------AC--ACGCAAC------------------------G--------------------------------TT----GCAGCGCGGAGCAC--------------------ATC---------AACCATACCCAA-------------------------CGACCAAACGATCCCGTCTATCGACCCA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAAAAAA----------------AAAAAACGTAA---------CAA----------------------------------------------------------------------------AAAACAACAACAACAAATATGAAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA----CAAAAAGTTTAACAATTGATACGAAA--ATACGAACTCGCCACTGT-GGTG-------------------------GCCCTTCC----CCC-TCCCCCCTACG---ACCACGT-------------------------------TT----GCAGAGATGAACAC----------------------------------ACGATCAATCA--G---------------CAATCGCATCCGAATGAGCCAGTCTATCGACCAA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AAATCCC-------------------------CCAATC---------------------------------------------AA----CAT-C-----AACAACAACAACA-ACTCAACAACA-------------ACTAT--------------------------------GA--------------------CTACAACAACGAAAAAAAAATAAAAAAAAAAACAAAAAACAAAACCGAAACTCATG----------------------------------------------------------------TTAA-CC-----------------------------GTATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAATAAAAACCAAAAAATCAATTTC----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................AAAAAACAAAACCGAAACTCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.........................................................................................CAT-C-----AACAACAACAACA-ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.........................................................................................CAT-C-----AACAACAACAACA-AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
AATACGA----------------AACGAAACAAA---------AAAAAAATACCAC----ACAAAACT----TTTGTTAA-------A-AA--------------------TAC----------------------------CA------------------------AAAAAAAAACAAAA----------------------------------C------------------------------AAAAAAAAA-----------------------------------------------------------------ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AA--------------AATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droKik1
AAAAAATATAATAATAAAAACACTGAAAACCTAT---------AAA---------------CAA-----------------------A-AA-------------------TA-CATCAACTAAA----------------------------------------------------ATAATA----------------------------------A------------------------------CAAAAAAAATCGAAATAA-CAAAACATAAAAACAAATGTAATTA-ATAATGAAA-----CCAACCAT-----------CATCA-----AATGAATTGTATACAAA--------------------------------ATGTGCCACAAATCACGAACCACAAACCTCAAACCTCAAACGAACCTCGCAACAATC-AC----ATCC----------------A-----AAA-----------A-ACC----AC-GA--------ACAA--ATCAAAGGCCGGAGCAGCAGC---------AACCTTATCC--------------------------------CGGCGATCCCGTTTACCGTCCCA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAAACCT-------------------------CATAAAA-------A---------------------------------------------------------AA-----ATT----------------------------GA-AATCAAAAAAATGAAAAACCCA----------------------------------AAAACTGAATA-TATAAA------A----------------------------------CAAAAAAATCAACTGCAAAAAATTATAATA--ATAACCAAA-----TC-------GTAAACCG--TAACAAACCA-----ATTGTATACTAA--------------------------------AATCGCCGATGG-TGTG-------------------------ATCCACCC----GCC-ACCTTCTTTT-------AAAACAAACA-----AAAAACAAAAACAAAA-TGTACGATAAA--------AAAC--ACCAAAGGCCGGAGCAACTGGAGCAAC---AACCATTCCCCAA--CA---------------ACAACCACAGCAGTGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAAACAT----------------TAAAAACCTCT---------AAA---------------AA-------------------------------------------------------------AAAAAC-------------------AAAAAAACGAAAAATTTAAAAATATAAATAAAA------------------------------------------------------------------------------CAAAA-AAACAACTCCTAAACAATGCCACA--AAAATAAAA-----CCGACGAAT-------G--TAACCAACCA-----ATTGTATACGTA--------------------------------AATCGCCACTGG-TGTG-------------------------CACCACCC----ACCCAACTTACATCATCT---ACA----AAA-------AA----------A--------AA-AA--------AAAAACCATAAAGGCCGGAGCAACTGCAGCAACAACAACCATTCCCCAA--CA---------------AAAG---CAATCAACAGCCCATATATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAAACAT----------------TGAAAACCTAA---------AAAA---------------------------------------------------------AA-----ATT----------------------------GA-AATCTAA---------AATC---AAATATAAATAAAA------------------------------------------------------------------------------CAAAA---ACAACTGCTAAAAAATTCCTGA--ATAACGAAA-----CCAACAAAC-------G--TAACGAAACA------ATGTTTACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCC----ACC-ACCTTCCATCA------ACA-----AA-----AAA--------------------A--AC--------AAAA--CTTAAAGGCCGGAGCAACTGCAGCAACAGAAACCATTCCAAAG--CA---------------------ACAGCAATGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGAACAT----------------TGAAAACCTCT---------AAA---------------CAAACCTA---------------------------------------------------------AAAC-------------------TATAAAACAAAAAATCCA-AAACATAAATAAAA------------------------------------------------------------------------------CAAAA---ACAACTG-------------AA--AAAAC----GAAAACCAACAAAT-------G--TAACGAAACAA----ATTATATACTAA--------------------------------AATCGCCCACGG-TGTG-------------------------TTCCACCC----GCC-ACCTCCACCC-------GCA----AAA-------A-----------A-ACA----AT-TC--------GAAA--TCCAAAGGCCGGAGCAACAGCAGC------AACCATTCCCC--------------------------AACCAAAACGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAACCT-------------------------CT---------AAA---------------C--------------------CGA----AAT-T------------------------------AAAAAC-------------------GATAAAACGAAAAACCGA-AAATATATTTAAAATAAAAAAAA-----------------------------------------------------------------------------CCAAC-------------CACA--AAATC----GAAATCCAACAAAC-------G--TAACCAAACA-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCC----ACC-ACCTTCGTCC-------ACA----AAA-----AAA-----------A-ACA----AT-GA--------AAAA--TCTAAAGGCCGGAGCAACAGCAGC------AACAATTCCCCAA--CAACAACAACAATAGCC------ACCCAAACGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACATTG------------------AAAACCTCT---------AAA---------------AAA---------------------------------------AAAAAAATT-TTTTAACTAAA-------------AACAA--------------------------------AA--------------------TTCCAAAAACTATAAAAAATAAA-------------------------------------TTTAAAAAA-AAATATCTACAAAAAACTGCTACCA-AAAAT----CAAATCCAACGAAC-------C--TAACAAAACG--------ATATACTAA--------------------------------AAACGCCAATGG-TGTG-------------------------TTCCACCC----ACC-GCCTTCCATCA------ACT-----GA-----AAA-----------A-TCA----AT-TT--------AAAA--ACTAAAGGCCGGAGCATCAGTACC------------TCCCCTT--CAGCCATGAC------A------GCCAGAATGAGCCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAAACCT-------------------------GAAAAAA-AAT--------AATATACATACAATATCAAA------------------AA--------------------TAT----------------------------AAAAATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAACTAAT-AAA-----TCAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACTTTAAAAAAAAAAAAAAACAAAAAACAAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGC------------AACAATTCCATGA--C---------------CGCCTGAACCACAATGATGCCATATATCGACCGT----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAACCACAATGATGCCA................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGA--C---------------CGCCTGAACCACAAT.......................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCCATATATCGACCG.....................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------ACTTTAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-------ACTTTAAAAAAAAAAAA...........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCA........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------------AACAATTCCATGA--C---------------CGC...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGATGCCATATATCGACCG.....................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------AAAA--ACTAAAGGCCGGAGCAGC------------A....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA--C---------------CGCCTGAACCACAATGATGC..................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGGAGCAGC------------AACAATT..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCCATATATCGACCGT----------------------------------------------------------------------------------------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGA--C---------------CGCCTGAACCACAAT.......................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCCATGA--C---------------CGCCTGAACCAC..........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACAAAAAACAAA-CA----A--AC--------AAA......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATGA--C---------------CGCCTGAACC............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACAAAAAACAAA-CA----A--A..................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAAAAAACAAA-CA----A--A..................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACAAAAAACAA..............................................................................................................................................................................................................................20200.3570000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACAAAAAA.................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAAAAAACAAA-CA----A--AC--------G........................................................................................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAAAAACAAA-C...........................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACAAAAAACAAA-............................................................................................................................................................................................................................20200.3060000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAAAAAAAAAAAAA..........................................................................................................................................................................................................................................1870.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAA-CA----A--AC--------AAAA--AC.................................................................................................................................................................................................1970.2920000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAACAAAAAACA...............................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAACA......................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAAACAAA-CA----A--AC--------.........................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------ACTTTAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAAACAAA-CA----A--AC--------AAAC--...................................................................................................................................................................................................23170.1220000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACAAAAAACAAA-............................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACAAAAAACA...............................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAAAACAAA-............................................................................................................................................................................................................................25120.0810000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAAACAAA-CA----A--AC--------AAAC--...................................................................................................................................................................................................24120.0810000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAAAACAA..............................................................................................................................................................................................................................24130.0810000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAC.......................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAAAACA...............................................................................................................................................................................................................................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACAAAAAACAAA-CA----A--AA--------.........................................................................................................................................................................................................25200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAA...................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACAAAAAACA...............................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAAAAC................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAACAA.....................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACAAAAAAC................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAAA-CA----A--AC--------AAAA--...................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAACCT-------------------------GAAAAAATAAT--------AATATACATACAATACCAAA------------------AA--------------------TAT----------------------------AA-AATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAAATAAT-AAA-----TAAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACT----AAA-----AAAAACA------AAC-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGCAGAAGCAGC---AACAGTTCCATGG--C---------------CGCCCGAACCACGATGATGCCATTTATCGACCGT----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCAGC---AACAG................................................................................................................................................................2094.0036000036000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCAGC---AACA.................................................................................................................................................................19120.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGCAGC---AAC..................................................................................................................................................................15200.05100000000001000000
droSec2
AAAACCT-------------------------GAAAAAATAAT--------AATATACATACAATACCAAA------------------AA--------------------TAT----------------------------GA-AATAAAC-----------------------------------CACACAAAT---------------------------------------------------------------------------------------TGCCGCCAAATAAT-AAA-----TAAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TCCCACCT----ACC-ACCTTCCATC-------ACT----AAA----AAAAAACA------AAA-CA----A--AC--------CAAA--ACTAAAGGCCGGAGCAGCAGAAGCAGC---AACAGTTCCATGG--C---------------CGCCCGAACCACGATGATGCCATTTATCGACCGT----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCCGGAGCAGCAGAAGCAG.........................................................................................................................................................................2411.0010001
droYak3
AATATAC----------------A---------AAAAT---------------------------ATT-AA------------------AA--------------------TAT----------------------------GA-AATAAAC-----------------------------------CAAACAAAT---------------------------------------------------------------------------------------TGCCGCA--ATAAT-AAA-----TCAACCAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCT----ACC-ACCTTCCATC-------ACTGAAAAAA----AAAAAACA------AAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAGCAACAGCAGC---AACAATTCCCCGG--CA---------------ACCGCAACCAAAATGAACCCATCTATCGACCGATGAAGGTATTCGACTATTCCAATAACCCAACGGCCGCCAAGGTGATCGATTATGGCCACAAGTCGGGTGATGGCAATCCCATCGATGGGCCTTCCGGCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGATGGCAATCCCATC.................2011.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATCGATTATGGCCACAAGTCGG..................................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGTGATCGATTATGGC............................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGATGAAGGTATTCGACTAT...................................................................................2311.00100000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACTAAAGGCCGGAGCAGCAACAGCA..........................................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACTAAAGGCCGGAGCAGCAACAGC...........................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAATCCCATCGATGGGCC.........2411.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCCACAAGTCGGGTGAT.............................2311.00100000010000
droEre2
AAAACCT-------------------------AAAAAAA-AAT--------AATAT----ACAATACCAAA------------------AA--------------------TAT----------------------------TA-CATAAAC-----------------------------------CAAACAAAT---------------------------------------------------------------------------------------TGCCGCA--AAAAT-AAA-----TCAACAAACGTAAA-CG--TAAC-----C-----ATTGTATACTAA--------------------------------AATCGCCAATGG-TGTG-------------------------TTCCACCT----ACC-ACCTTCCATC-------ACTGAAAAAA-----------A------AAA-CA----A--AC--------AAAA--ACTAAAGGCCGGAGCAACAGCGGA------AACAATTCAATGG--CA---------------ACCGCAACCAGAATGAACCCATCTATCGACCGA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCCATCTATCGACC......................................................................................................1911.0010100000

Generated: 05/19/2015 at 06:12 PM