ID:

dvi_14039

 Coordinate:

scaffold_12970:11687186-11687336 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.8 -27.4 -27.3

Flybase annnotation

CDS [Dvir\GJ18599-cds]; exon [dvir_GLEANR_3432:2]; intron [Dvir\GJ18599-in]

Repeatable elements

NameClassFamilyStrand
DM1731_LTRLTRCopia-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTCGTATAAAAAGTATGACACACACACACACACATGCACACACACATTCTCATATATGCCAACATACATATGCACGCATATAGTCATATTTGTATATACATACATGCATAGACATGAATCGAATGTGTGTTTATGTATTAGTATACACGCACGCAGTAAACGAATATTTTTTTAATTTGTTTCCCATTCATTTTGCACAGGCAACAGAGTCCTTTATGACCTTTGAAGGCCATCAGATACAAGGAGCGCC
**************************************************...(((((((...(((....)))...)))))))........(((((((..(((((((.(((.((((.......)))).))).)))))))..)))))))..........((((((((.........))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060674
9x140_ovaries_total
.................................................................................................................................................................................................................GTCCTTTATGACCTTTGAAGGC.................... 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................ATAGACATGAATCGAATGTGT.......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTTGAAGGCCATCAGATACAAGGAGC... 26 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TTTATGACCTTTGAAGGCCATC................ 22 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................GGGCCATCGGATGCAAGGAGCG.. 22 3 2 0.50 1 0 0 0 0 1 0 0
.........................CACACACACATGCACACACA.............................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACCTTCGAAGGTCGTCA............... 18 3 20 0.05 1 0 0 0 0 0 1 0
......................ACACACACACACATGCACA.................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AAAGCATATTTTTCATACTGTGTGTGTGTGTGTGTACGTGTGTGTGTAAGAGTATATACGGTTGTATGTATACGTGCGTATATCAGTATAAACATATATGTATGTACGTATCTGTACTTAGCTTACACACAAATACATAATCATATGTGCGTGCGTCATTTGCTTATAAAAAAATTAAACAAAGGGTAAGTAAAACGTGTCCGTTGTCTCAGGAAATACTGGAAACTTCCGGTAGTCTATGTTCCTCGCGG
**************************************************...(((((((...(((....)))...)))))))........(((((((..(((((((.(((.((((.......)))).))).)))))))..)))))))..........((((((((.........))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M047
female body
 SRR060679
140x9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 V116
male body
.........................GTGTGTGTGTACGTGTGTGTGT............................................................................................................................................................................................................ 22 0 20 0.25 5 4 0 0 0 0 1 0 0 0
..........................TGTGTGTGTACGTGTGTGTGT............................................................................................................................................................................................................ 21 0 20 0.10 2 0 0 1 0 0 0 0 1 0
.................................................................................................................................................................................AAAAAAGGTTAAGTAAAACGT..................................................... 21 2 18 0.06 1 0 0 0 1 0 0 0 0 0
.................CTGTGTGTGTGTGTGTGTAC...................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTGGAACCTTCAGGTAG................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................GTGTGTGTACGTGTGTGTGT............................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
............................TGTGTGTACGTGTGTGTGT............................................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
........................TGTGTGTGTGTACGTGTGTGT.............................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................GTGTGTGTGTGTGTGTAC...................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.................CTGTGTGTGTGTGTGTGTA....................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:11687136-11687386 - dvi_14039 TTTCGTATAA--AAAGTATGACACACACA-CAC-----------------------------------------------------------------------A-CAC--------ATGCAC----------------ACACACATTCTCATATATGCCAACATA-----------------------CATATGCACGCATATAGTCATATTTGTATATACATACATGCATAGAC-----------------------------------ATGAATCGA-ATGTGTGTTTATGTA---------------------------------------------------------------------TTAGTATACACGCA---------------------------------------------CGC--A---------------GTAAA-----CGAATATTTTT------------------TTAATTTGTT---------TCCCA------TTCATTTTGCACAGGCAACAGAGTCCTTTATGACCTTTGAAGGCCATCAGATACAAGGAG--------CGCC
droMoj3 scaffold_6473:9550211-9550521 + TTTCCCATATA-AAAGTATGACACACACA-CGC-----------------------------------------------------------------------A-TACATATACATAGACAC----------------AGACGTCTTCATATA--TGC-------------TAAATTT--------------------------------------------------------------------GCACGAATAGTCATGTTGT-ATGCATAATTCGT-AT--GTGTGTGTGTGTATATATATACAAATATATAAATATATATATATATA-------TATATA--------------------TTGCTGTATATGTATATGCACAAACAC-ACACATACACGCGCGC----ACACACACT--CACAAA---------------CT--A-----ATCGAATTTTTATAAAT-------------------GTT---------TCTCA-----TTTCATT-TTCCCAGGCAACGGAGTCCTTTATGACTTTCGAAGGACACCAAATCCAAGGAG--------CGCC
droGri2 scaffold_15203:3656325-3656567 - TTTT--------------------GATGA-CGCCTTTGCCTCTGGCAGGACATTGCTTAATTGAAGTTTG----------------------------------------TGCATAAATATTC----------------------TCGAAATTTCTAACGATGACA-----------------------CACG--------CCTCAT------------------CATGCATATAT-------------------------AT-----C-----------------------------------------------TATGTTTGTGT------------------GCATGCATATG-------------------------------TATT-------------TAATTTCATCTGT-----AA-----TCGAATGTTTCGAAT----------------GTTTGG------------------C---------TCT---TTT--CGA------TCTATTTTGGGCAGGCGACAGACAGTTTCATGACCTTCGAGGGCCATCAGATACAAGGAG--------CGCC
droWil2 scf2_1100000004909:9478891-9479047 - ACAT--------------------ATGTA-CAT-----------------------------------------------------------------------A-CATATACAGACATATTC----------------ATGTATATGCATACATACATATATAAT-----------------------TTTA--------TATAT---------------------------------------------------------------------------------ATGTATATA---------------------------------------------------------------------AT---------------------------------------------------------------------------------------------ATTTGT------------------TG---------TA---TTT--TTTTTT-TTTT-----CATTTAGGCTACAGATTCATTCATGACCTTCGAAGGCCATCAAATTCAGGGAG--------CACC
dp5 XL_group3a:1213333-1213541 + CTTC--------------------CCATC-GGT-----------------------------------------------------------------------C-CGGGTACACACATACACCCAATA-----CACGCG----------CGCCTGTACGTATATA-----------------------------------------------CA--AAAATCTTCATATATATAT-------------------------GC-----TGCGAGGCCTGT-GTGTGTGTGTGTGTG---------------------------------------------------------------------TGAGTACATATGTA------------CGATGTGCG-------------------------------------------------------------ATTTTTCAAGAA---------------------------ACA--A----TT-C----TC-TTTCAAGGCAACAGAATCCTTTATGACCTTCGAGGGCCATCAGATACAGGGAG--------CTCC
droPer2 scaffold_15:1673931-1674135 - CTTC--------------------CCATC-GGT-----------------------------------------------------------------------C-CGGGTACACACATACACCCAATA-----AACGCG----------CGCCTGTACGTATATA-----------------------------------------------CA--AAAATCTTCATATATATAT-------------------------GC-----T----GCGAGGC-CTGTGTGTGTGTGTG---------------------------------------------------------------------TGAGTACATATGTA------------CGATGTGCG-------------------------------------------------------------ATTTTTCATGAA---------------------------ACA--A----TT-A----TC-TTTCAAGGCAACAGAATCCTTTATGACCTTCGAGGGCCATCAGATACAGGGAG--------CTCC
droAna3 scaffold_13077:102855-103020 - ACAT--------------------ATACA-TAT-----------------------------------------------------------------------A-CATATACATATACATAT----------------ACATATACATATACATATACATATACA-----------------------TATA--------CATATA------------------CATATACATAT-------------------------AC-----A-----------------------------------------------TATACATATAC------------------ATATACATATACATATACAT---------------ATACATATACAT-ATACATATAAATACA-----------------------------------------------ATGAAATTTATTAACGT-------------------ATT---------TTTCA------------TT----------------------------------------------------------------
droBip1 scf7180000396733:477684-477902 - ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATATATATATACATATAT---------------ACATATATATAT-ATATACATATATACAT----ATATACA----TA-------------------------------------------------ATTTCTAGT----------TTATGA-------------------------------ATCTATACCTACATAGCTTATAAAAGTGGTACAATCTTAAGAACCTTAAAGTTCA
droKik1 scf7180000298888:9998-10164 - ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TAT--A---------------TACAG-----TTAGTATTTTT------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454077:412139-412289 + TATAC-------------------AAGCA---T-----------------------------------------------------------------------T-TAGATATACATATATAT----------------ACATGTATA---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ATAT-------------TTATACTATCCCT-----AC-----ATATTGATTTCAATC----------------ATTTAA------------------T---------CAG---ACA--TG---T-CT----TT-TTTCTAGGCAACTGACTCCTTCATGACCTTTGAGGGCCACCAAATACAGGGTG--------CACC
droEle1 scf7180000490629:15545-15695 - ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TTT--A------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776638:16556-16730 + ACAT--------------------ATACA-TAT-----------------------------------------------------------------------A-CATATACATATACATAT----------------ACATATACATATACATATACATATACA-----------------------TATA--------CATATA------------------CATATACATAT-------------------------AC-----A-----------------------------------------------TATACATATAC------------------ATATACATATACATATACAT---------------ATACATATACAT-ATACATATACATATAC----ATATACA----TAT--A---------------------------------TAT------------------ATAATATATT---------ATA--------TATATATT----------------------------------------------------------------
droBia1 scf7180000300828:49-226 + ATAC--------------------ATATA-CAT-----------------------------------------------------------------------A-TACATATACATATACAT----------------ATACATATACATATACATATACATATA-----------------------CATA--------TACATA------------------TACATATACAT-------------------------AT-----A-----------------------------------------------CATATACATAT------------------ACATATACATATACATATAC---------------ATATACATATAC-ATATACATATACATAT----ACATACA----TAT--ATATATAC-----AT----------------ATACG--------------------------------------CTCCG------TCTATTTT----------------------------------------------------------------
droTak1 scf7180000415381:115409-115511 + ACAC--------------------ACACA-CAC-----------------------------------------------------------------------A-CACACACACACACACAC----------------ACACACACACACACACACACACACACA-----------------------CACA--------CACACA------------------CACACACACAC-------------------------AC-----A-----------------------------------------------CACACACACAC------------------ACATACTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------------------------------------
droEug1 scf7180000408386:132-309 + ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TAT--ATACATATATAACATATATA-------------------------------------------CC---------AT-------------ATAT----------------------------------------------------------------
dm3 chrUextra:3967738-3967924 + ATTGATCCAA--AAATTGT-------------------------------------------------------------------------TGAATATAGGCA-AT----------------------GCCCACATGTG------TG----------T-------------TGAATATAGGCAATTTCCACATGTTCATATGTAATTTTGTATG--AGAACATACATACATACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------
droSim2 2r:898480-898618 - ATAT--------------------AAGCA----------------------------------------------------------------------------AT----------------------GCCCACATGTG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACATACATGCATACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------
droSec2 scaffold_1:199555-199751 + TTTTTTATAAATAAAGTGTTCCATATATA-TA------------------------------------TATATATATGTAGTATTATAGTGTTGAATATAAGCA-AT----------------------GCCCACATGTG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACATACATACATACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------
droYak3 X:20114210-20114530 + TTTC--------------------GAGTGACACATT--------------------------------------------------------------------A-C--GCCCATGTTCGCAT----------------AAATAAATAC--ACACATAC--GAAATATATGGCCAACAT---------ACACCTGAGGGCAGCACGATAGAACCCAAAATATATACACGAAAGGCACTGAACAAATTGCACCAATTACT---TTGAAAAACTTAATTCATTT--TGTGTTTCTTTGTCATTGTCAACCAAAAAATTAAAAATTATAAAATGAAAAATACTAAAAA--------------------TTG---TCTAATTT---------------------------------------------AGT--A---------------TTGAA-----CGA----TAAT------------------A------T---TA---ACT--TATTTT-TTTA-----CTTTCAGGCTACAGACTCTTTCATGACCTTTGAGGGCCACCAAATACAGGGAG--------CACC
droEre2 scaffold_4784:9738895-9739126 + ATAC--------------------ATACA-TAC-----------------------------------------------------------------------A-TACATACATACATACAT----------------ACATACATACATACATACATACATACA-----------------------TACA--------TACATA------------------CATACATACAT-------------------------AC-----A-----------------------------------------------TACATACATAC------------------ATACA--TACATACGTAGAT---------------ACATGCATACAT-ACATGCATACATACAC----CGGTACA----TAC--A--------CTACACATACACTACACTCACTGC--TACAGAGAG--ATTACTATT----------TTGCGA-------C------TCTAA------------------------------ATTAGAAGACATTCCTTACAGACTG--------CGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTCGTATAA--AAAGTATGACACACACA-CAC-----------------------------------------------------------------------A-CAC--------ATGCAC----------------ACACACATTCTCATATATGCCAACATA-----------------------CATATGCACGCATATAGTCATATTTGTATATACATACATGCATAGAC-----------------------------------ATGAATCGA-ATGTGTGTTTATGTA---------------------------------------------------------------------TTAGTATACACGCA---------------------------------------------CGC--A---------------GTAAA-----CGAATATTTTT------------------TTAATTTGTT---------TCCCA------TTCATTTTGCACAGGCAACAGAGTCCTTTATGACCTTTGAAGGCCATCAGATACAAGGAG--------CGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTATGACCTTTGAAGGC............................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ATAGAC-----------------------------------ATGAATCGA-ATGTGT...........................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGGCCATCAGATACAAGGAG--------C...2611.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGACCTTTGAAGGCCATC........................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................CA-CAC-----------------------------------------------------------------------A-CAC--------ATGCAC----------------ACACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................ACACA-CAC-----------------------------------------------------------------------A-CAC--------ATGCAC----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
TTTCCCATATA-AAAGTATGACACACACA-CGC-----------------------------------------------------------------------A-TACATATACATAGACAC----------------AGACGTCTTCATATA--TGC-------------TAAATTT--------------------------------------------------------------------GCACGAATAGTCATGTTGT-ATGCATAATTCGT-AT--GTGTGTGTGTGTATATATATACAAATATATAAATATATATATATATA-------TATATA--------------------TTGCTGTATATGTATATGCACAAACAC-ACACATACACGCGCGC----ACACACACT--CACAAA---------------CT--A-----ATCGAATTTTTATAAAT-------------------GTT---------TCTCA-----TTTCATT-TTCCCAGGCAACGGAGTCCTTTATGACTTTCGAAGGACACCAAATCCAAGGAG--------CGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---------TCTCA-----TTTCATT-TTCCCAG..........................................................2211.001100000
droGri2
TTTT--------------------GATGA-CGCCTTTGCCTCTGGCAGGACATTGCTTAATTGAAGTTTG----------------------------------------TGCATAAATATTC----------------------TCGAAATTTCTAACGATGACA-----------------------CACG--------CCTCAT------------------CATGCATATAT-------------------------AT-----C-----------------------------------------------TATGTTTGTGT------------------GCATGCATATG-------------------------------TATT-------------TAATTTCATCTGT-----AA-----TCGAATGTTTCGAAT----------------GTTTGG------------------C---------TCT---TTT--CGA------TCTATTTTGGGCAGGCGACAGACAGTTTCATGACCTTCGAGGGCCATCAGATACAAGGAG--------CGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCATGACCTTCGAGGGC............................2111.00110
droWil2
ACAT--------------------ATGTA-CAT-----------------------------------------------------------------------A-CATATACAGACATATTC----------------ATGTATATGCATACATACATATATAAT-----------------------TTTA--------TATAT---------------------------------------------------------------------------------ATGTATATA---------------------------------------------------------------------AT---------------------------------------------------------------------------------------------ATTTGT------------------TG---------TA---TTT--TTTTTT-TTTT-----CATTTAGGCTACAGATTCATTCATGACCTTCGAAGGCCATCAAATTCAGGGAG--------CACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCATCAAATTCAGGGAG--------C...2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAAGGCCATCAAATTCAGGGAG--------C...2711.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCATGACCTTCGAAGGCCATCAA......................2611.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCATGACCTTCGAAGGCC...........................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTCGAAGGCCATCAAATTCAGG...............2611.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCCATCAAATTCAGGGAG--------C...2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCAAATTCAGGGAG--------CACC2211.00100010
dp5
CTTC--------------------CCATC-GGT-----------------------------------------------------------------------C-CGGGTACACACATACACCCAATA-----CACGCG----------CGCCTGTACGTATATA-----------------------------------------------CA--AAAATCTTCATATATATAT-------------------------GC-----TGCGAGGCCTGT-GTGTGTGTGTGTGTG---------------------------------------------------------------------TGAGTACATATGTA------------CGATGTGCG-------------------------------------------------------------ATTTTTCAAGAA---------------------------ACA--A----TT-C----TC-TTTCAAGGCAACAGAATCCTTTATGACCTTCGAGGGCCATCAGATACAGGGAG--------CTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCGAGGGCCATCAGATACA.................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATGACCTTCGAGGGCCATC........................2311.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAGATACAGGGAG--------CTCC2111.0010100000000
............................................................................................................................CAATA-----CACGCG----------CGCCTGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGACCTTCGAGGGCCATC........................2211.0010001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------ACA--A----TT-C----TC-TTTCAAGGCAACAGAATCC..............................................2911.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTATGACCTTCGAGGGCC...........................2311.0010100000000
.....................................................................................................................ATACACCCAATA-----CACGCG----------CGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
CTTC--------------------CCATC-GGT-----------------------------------------------------------------------C-CGGGTACACACATACACCCAATA-----AACGCG----------CGCCTGTACGTATATA-----------------------------------------------CA--AAAATCTTCATATATATAT-------------------------GC-----T----GCGAGGC-CTGTGTGTGTGTGTG---------------------------------------------------------------------TGAGTACATATGTA------------CGATGTGCG-------------------------------------------------------------ATTTTTCATGAA---------------------------ACA--A----TT-A----TC-TTTCAAGGCAACAGAATCCTTTATGACCTTCGAGGGCCATCAGATACAGGGAG--------CTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTATGACCTTCGAGGGC............................2013.003300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCAGATACAGGGAG--------CTC.2111.001001000
droAna3
ACAT--------------------ATACA-TAT-----------------------------------------------------------------------A-CATATACATATACATAT----------------ACATATACATATACATATACATATACA-----------------------TATA--------CATATA------------------CATATACATAT-------------------------AC-----A-----------------------------------------------TATACATATAC------------------ATATACATATACATATACAT---------------ATACATATACAT-ATACATATAAATACA-----------------------------------------------ATGAAATTTATTAACGT-------------------ATT---------TTTCA------------TT----------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATATATATATACATATAT---------------ACATATATATAT-ATATACATATATACAT----ATATACA----TA-------------------------------------------------ATTTCTAGT----------TTATGA-------------------------------ATCTATACCTACATAGCTTATAAAAGTGGTACAATCTTAAGAACCTTAAAGTTCASizeHit CountTotal NormTotal
No Reads
droKik1
ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TAT--A---------------TACAG-----TTAGTATTTTT------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TATAC-------------------AAGCA---T-----------------------------------------------------------------------T-TAGATATACATATATAT----------------ACATGTATA---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ATAT-------------TTATACTATCCCT-----AC-----ATATTGATTTCAATC----------------ATTTAA------------------T---------CAG---ACA--TG---T-CT----TT-TTTCTAGGCAACTGACTCCTTCATGACCTTTGAGGGCCACCAAATACAGGGTG--------CACCSizeHit CountTotal NormTotal
No Reads
droEle1
ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TTT--A------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAT--------------------ATACA-TAT-----------------------------------------------------------------------A-CATATACATATACATAT----------------ACATATACATATACATATACATATACA-----------------------TATA--------CATATA------------------CATATACATAT-------------------------AC-----A-----------------------------------------------TATACATATAC------------------ATATACATATACATATACAT---------------ATACATATACAT-ATACATATACATATAC----ATATACA----TAT--A---------------------------------TAT------------------ATAATATATT---------ATA--------TATATATT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAC--------------------ATATA-CAT-----------------------------------------------------------------------A-TACATATACATATACAT----------------ATACATATACATATACATATACATATA-----------------------CATA--------TACATA------------------TACATATACAT-------------------------AT-----A-----------------------------------------------CATATACATAT------------------ACATATACATATACATATAC---------------ATATACATATAC-ATATACATATACATAT----ACATACA----TAT--ATATATAC-----AT----------------ATACG--------------------------------------CTCCG------TCTATTTT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACAC--------------------ACACA-CAC-----------------------------------------------------------------------A-CACACACACACACACAC----------------ACACACACACACACACACACACACACA-----------------------CACA--------CACACA------------------CACACACACAC-------------------------AC-----A-----------------------------------------------CACACACACAC------------------ACATACTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACAT--------------------ATATA-CAT-----------------------------------------------------------------------A-TATACATATATACATAT----------------ATACATATATACATATATACATATATA-----------------------CATA--------TATACA------------------TATATACATAT-------------------------AT-----A-----------------------------------------------CATATATACAT------------------ATATACATATATACATATAT---------------ACATATATACAT-ATATACATATATACAT----ATATACA----TAT--ATACATATATAACATATATA-------------------------------------------CC---------AT-------------ATAT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTGATCCAA--AAATTGT-------------------------------------------------------------------------TGAATATAGGCA-AT----------------------GCCCACATGTG------TG----------T-------------TGAATATAGGCAATTTCCACATGTTCATATGTAATTTTGTATG--AGAACATACATACATACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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Ovary		SRR553488
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....................................................................................................................................CACATGTG---------------------------------------------------------CATATGTAATTTTGTATG--A................................................................................................................................................................................................................................................................................................................................................................................27120.25300000002010000000
..................................................................................................................................................................................................................................................................................................TATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--.............................................................................................................................................................2540.25100000000000001000
......................................................................................................................................................................................................................................................................................................TA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----C..................................................................................................................................2880.25200000002000000000
..................................................................................................................................................................................................................................................................................................TATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TG...........................................................................................................................................2840.25100010000000000000
....................................................................................................................................................................................................................................................................................................TATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----C..................................................................................................................................3040.25100000001000000000
..........................................................................................................................................TG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACA...........................................................................................................................................................................................................................................................................................................................................................................26120.25300000000000021000
................................................................................................................................................................................................................................................................................................TATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------.............................................................................................................................................2840.25100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--A---------------TGAAG-----CTGGCATTTTT........................................................................................................................2080.25200000000000002000
..........................................................................................................................................................................................................................................................................................TGTATGTATATATA---------------------------------------------------------------------TTAGTAAATA...................................................................................................................................................................................................................2450.20100000000100000000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------.............................................................................................................................................................................................................................2950.20100000001000000000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATGTATGTATATA....................................................................................................................................................................................................................................................................................................2750.20100000000000010000
................................................................................................................................................................................................................................................................................TGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGT........................................................................................................................................................................................................................2850.20100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-----CTGGCATTTTTATGTGTA.................................................................................................................21100.20200000000000002000
................................................................................................................................................................................................................................................................................TGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------T............................................................................................................................................................................................................................2450.20100000010000000000
............................................................................................................................................................................................................................................................................................TATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGC................................................................................................................................................................................................................2550.20100000001000000000
................................................................................................................................................................................................................................................................................TGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTA..........................................................................................................................................................................................................................2650.20100000000000010000
..........................................................................................................................................TG---------------------------------------------------------CATATGTAATTTTGTATG--AGA..............................................................................................................................................................................................................................................................................................................................................................................23120.17200000010100000000
........................................................................................................................................TGTG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACA...........................................................................................................................................................................................................................................................................................................................................................................28120.17200000001001000000
....................................................................................................................................CACATGTG---------------------------------------------------------CATATGTAATTTTGTATG--AGA..............................................................................................................................................................................................................................................................................................................................................................................29120.17200000000110000000
...........................................................................................................................................G---------------------------------------------------------CATATGTAATTTTGTATG--AGAACA...........................................................................................................................................................................................................................................................................................................................................................................25130.15200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------2570.14100000001000000000
................................................................................................................................................................................................................................................................................TGAACTGT-ATGTATGTATA......................................................................................................................................................................................................................................................................................................1970.14100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................TAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTA..........................................................................................................................2670.14100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................TAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTT.........................................................................................................................2770.14100000000000001000
.....................................................................................................................................................................................................................................CATACAC-----------------------------------ATGAACTGT-ATGTATGTA........................................................................................................................................................................................................................................................................................................2570.14100000000010000000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATGTATGTATAA.....................................................................................................................................................................................................................................................................................................2670.14100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATGTGTATCAGT------------------------------------TTCG....................................................................2170.14100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------2270.14100000000000001000
............................................................................................................................................................................................................................................................................................TATGTATATATA---------------------------------------------------------------------TTAGTA.......................................................................................................................................................................................................................1870.14100000000100000000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATGTATGTATAT.....................................................................................................................................................................................................................................................................................................2670.14100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................AAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATT...........................................................................................................................2470.14100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATGTGTATCAGT------------------------------------TTCAGTT.................................................................2470.14100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTT.................................................................2970.14100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATGTGTATCAGT------------------------------------TTC.....................................................................2070.14100000000001000000
..........................................................................................................................................................................................................................................AC-----------------------------------ATGAACTGT-ATGTATGTA........................................................................................................................................................................................................................................................................................................2070.14100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................AAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----...................................................................................................................................2080.13100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................TAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----...................................................................................................................................1780.13100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--A---------------TGAAG-----CTGGCATTT..........................................................................................................................1880.13100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GC--A---------------TGAAG-----CTGGCATTTTTAT......................................................................................................................2180.13100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTA.................................................................................................................2880.13100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----...................................................................................................................................2580.13100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATT...........................................................................................................................2080.13100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAG---------------------------------------C----CGC--A---------------TGA..........................................................................................................................................1680.13100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----C..................................................................................................................................2680.13100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................TAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CT.................................................................................................................................2680.13100000000010000000
...............................................................................................................................................................................................................................................................................ATGAACTGT-ATGTAT...........................................................................................................................................................................................................................................................................................................1580.13100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTAT................................................................................................................2880.13100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------........................................................................2880.13100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGG..........................................................................................................................................23100.10100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAG-----CTGGCATTTTTATGTGT..................................................................................................................21100.10100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAG-----CTGGCATTTTTATGTGTA.................................................................................................................23100.10100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAG-----CTGGCATTTTTATGT....................................................................................................................20100.10100000000001000000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATG..............................................................................................................................................................................................................................................................................................................17100.10100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----CTGGCATTTTTATGTGTAT................................................................................................................21100.10100000000000001000
..........................................................................................................................................TG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACATA.........................................................................................................................................................................................................................................................................................................................................................................28120.08100000000010000000
.......................................................................................................................................................................................................TATGTAATTTTGTATG--AGAACATAC........................................................................................................................................................................................................................................................................................................................................................................25120.08100000010000000000
.......................................................................................................................................................................................................TATGTAATTTTGTATG--AGAAC............................................................................................................................................................................................................................................................................................................................................................................21130.08100000000000010000
...............................................................................................................................................................................................................TTTGTATG--AGAACATA.........................................................................................................................................................................................................................................................................................................................................................................16130.08100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATGTGTATCAGT------------------------------------TTTTC...................................................................22190.05100000001000000000
.....................................................................................................................................................................................................................................................................................TGT-ATGTATGTATATA....................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
TTTTTTATAAATAAAGTGTTCCATATATA-TA------------------------------------TATATATATGTAGTATTATAGTGTTGAATATAAGCA-AT----------------------GCCCACATGTG---------------------------------------------------------CATATGTAATTTTGTATG--AGAACATACATACATACAC-----------------------------------ATGAACTGT-ATGTATGTATATATA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CTGGCATTTTTATGTGTATCAGT------------------------------------TTCAGTTT----------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................TAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----...................................................................................................................................24200.3573130
..............................................................................................................................................................................................................................................................................................................................................................................TAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----C..................................................................................................................................25200.2040031
............AAAGTGTTCCATATATA-TA------------------------------------TA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
.............................................................................................GAATATAAGCA-AT----------------------GCCCACATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.1111000
...........................................................................................................................................G---------------------------------------------------------CATATGTAATTTTGTATG--AGAACA...........................................................................................................................................................................................................................................................................................................................................................................25200.1022000
..............................................................................................................................................................................................................................................................................................................................................................................TAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CT.................................................................................................................................26200.0511000
.......................................................................................................................................................................................................................................TACAC-----------------------------------ATGAACTGT-ATGTATGTATA......................................................................................................................................................................................................................................................................................................25200.0511000
...........................................................................................................................................G---------------------------------------------------------CATATGTAATTTTGTATG--AGAACAT..........................................................................................................................................................................................................................................................................................................................................................................26200.0511000
.....................................................................................................................................................................................................CATATGTAATTTTGTATG--AGAAC............................................................................................................................................................................................................................................................................................................................................................................23200.0511000
...............................................................................................................................................................................................................................................................................................................................................................................AGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----CT.................................................................................................................................25200.0511000
.......................................................................................................................................................................................................TATGTAATTTTGTATG--AGAACATACA.......................................................................................................................................................................................................................................................................................................................................................................26200.0511000
......................................................................................................................................................................................................................................................................................................TA---------------------------------------------------------------------TTAGTAAATAAGCAG---------------------------------------C----CGC--A---------------TGAAG-----...................................................................................................................................27200.0510010
droYak3
TTTC--------------------GAGTGACACATT--------------------------------------------------------------------A-C--GCCCATGTTCGCAT----------------AAATAAATAC--ACACATAC--GAAATATATGGCCAACAT---------ACACCTGAGGGCAGCACGATAGAACCCAAAATATATACACGAAAGGCACTGAACAAATTGCACCAATTACT---TTGAAAAACTTAATTCATTT--TGTGTTTCTTTGTCATTGTCAACCAAAAAATTAAAAATTATAAAATGAAAAATACTAAAAA--------------------TTG---TCTAATTT---------------------------------------------AGT--A---------------TTGAA-----CGA----TAAT------------------A------T---TA---ACT--TATTTT-TTTA-----CTTTCAGGCTACAGACTCTTTCATGACCTTTGAGGGCCACCAAATACAGGGAG--------CACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCATGACCTTTGAGGGCCAC.........................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCCACCAAATACAGGGAG--------CACC2711.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTTTCATGACCTTTGAG...............................2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGACTCTTTCATGACCTTTGAG...............................2611.00101000000000
droEre2
ATAC--------------------ATACA-TAC-----------------------------------------------------------------------A-TACATACATACATACAT----------------ACATACATACATACATACATACATACA-----------------------TACA--------TACATA------------------CATACATACAT-------------------------AC-----A-----------------------------------------------TACATACATAC------------------ATACA--TACATACGTAGAT---------------ACATGCATACAT-ACATGCATACATACAC----CGGTACA----TAC--A--------CTACACATACACTACACTCACTGC--TACAGAGAG--ATTACTATT----------TTGCGA-------C------TCTAA------------------------------ATTAGAAGACATTCCTTACAGACTG--------CGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/19/2015 at 06:12 PM