ID:

dvi_13988

 Coordinate:

scaffold_12970:11097333-11097483 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.6 -34.6 -34.6

Flybase annnotation

exon [dvir_GLEANR_4414:1]; CDS [Dvir\GJ19525-cds]; intron [Dvir\GJ19525-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12822:2635524-2635543 +
  2. scaffold_12855:1457754-1457773 +
  3. scaffold_12875:1222658-1222677 +
  4. scaffold_12875:14312465-14312484 +
  5. scaffold_12875:19716150-19716169 +
  6. scaffold_12928:5171656-5171675 +
  7. scaffold_12963:13845666-13845685 +
  8. scaffold_12970:6787984-6788003 +
  9. scaffold_12970:6933478-6933497 +
  10. scaffold_12970:9571332-9571351 +
  11. scaffold_12970:9621382-9621401 +
  12. scaffold_12970:11097071-11097090 +
  13. dvi_13988  scaffold_12970:11097385-11097404 +
  14. scaffold_12970:11446955-11446974 +
  15. scaffold_13042:4729461-4729480 +
  16. scaffold_13047:9983288-9983307 +
  17. dvi_16959  scaffold_13047:14668645-14668664 +
  18. scaffold_13049:5136352-5136371 +
  19. scaffold_13052:664216-664235 +
  20. scaffold_13246:2382871-2382890 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTACGACGAAAAAGAAGGATGCCGCCGCAGCCGACAAGGAGAATCTCTGGTGAGTTGAGCTTTAGCCTAGGCACAAGAAATGTGCATGCCTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCACTCAGCGTTTAATCATATGGCGCGCCTATTTTTCTTCTTTGTTTTTTTCTTGCTTTTAGGCAAATCAGCTGCTTTTGGCCAACTGCTTTTTGACTTTCTTTAGCTGACGTTTGCAATAATTTTCGGTT
**************************************************...((((((..(((.(((((((..(((((((...(((.....((((((.((((..((((.(((.(((....))).)))))..))..))))..))))))..............)))...)))))))..))))))))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 M027
male body		 SRR060656
9x160_ovaries_total
 SRR060678
9x140_testes_total
 V116
male body		 M061
embryo
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
.TTACGACGAAAAAGAAGGATGC.................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AGCCGACAAGGAGAATCTCTGGTCTGC................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AAAGAAGGATGCCGCCGCAGC........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TTTACGACGAAAAAGAAGGATGC.................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........GAAAAAGAAGGATGCCGCCGCA............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGACGAAAAAGAAGGATGC.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CAAGGAGAATCTCTGGTCTGC................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TACGACGAAAAAGAAGGATGC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................AGGATGCCGCCGCAGCCGACAAGG................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ACGACGAAAAAGAAGGATGC.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCTCTGGTGATTTGAGCTGTA.......................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................TCTTTGGTGATTTGAGCTTT........................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................CGGACAAGGGGAATCACTGG........................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................TTAGTCTAGGCAAAAGAAA.......................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TTTCTGTGTGTGCGCACTCTG........................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......CGAGAAAGAAGGATGCTGCT................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................GTGTGTGTCTGTGTGTGTGC................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................ATGCCTGTGGGTGTGTGTGT................................................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................AACGGAATCTCTGGTGAG.................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................TCTTATGAGTTGAGCTTT........................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AAATGCTGCTTTTTCTTCCTACGGCGGCGTCGGCTGTTCCTCTTAGAGACCACTCAACTCGAAATCGGATCCGTGTTCTTTACACGTACGGACACACACACACACACACAGACACACACACGTGAGTCGCAAATTAGTATACCGCGCGGATAAAAAGAAGAAACAAAAAAAGAACGAAAATCCGTTTAGTCGACGAAAACCGGTTGACGAAAAACTGAAAGAAATCGACTGCAAACGTTATTAAAAGCCAA
**************************************************...((((((..(((.(((((((..(((((((...(((.....((((((.((((..((((.(((.(((....))).)))))..))..))))..))))))..............)))...)))))))..))))))))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 M047
female body
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060678
9x140_testes_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
..................................TGATCCTCTTAGAGACAAC...................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
........................CGGCGTCGGCTGTCCTTCTA............................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0
........................................................................................................................................................AAAAGAAGAAACAAAAAA................................................................................. 18 0 7 0.14 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................ACGACAAACTGAGAGAAA........................... 18 2 20 0.10 2 0 0 0 0 0 1 1 0
.................TCTACGGCGGGGTCGGCT........................................................................................................................................................................................................................ 18 2 10 0.10 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCGACTGCAAATGTGATTAA....... 21 3 10 0.10 1 0 0 0 1 0 0 0 0
...................................................................................ACGTACGGACACACACACAC.................................................................................................................................................... 20 0 11 0.09 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................GAAACCGGTTGAAGAAAA...................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:11097283-11097533 + dvi_13988 TTTACGACGA----AAAAGAAGGATGCCGCCGCAGCCGACAAGGAGAATCTCTGGTGAGTTGAGCTTTAGCCTAGGCACAAGAAATGTGCATGC--CT--GTGTG--TG------TGTGTG--TGTG---------------TC--T---GTGTG--------------------------------------------------------------------------------T----GTGCACTCAGCG---------------------------------------------------------TTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------ATATGGCGCG-------------------------CCTATTTTTCTTCTTTGTTTTTTTCTTGCTTTTAGGCAAATCAGCTGCTTTTGGCCA--------------------------------------------------------------------------------------------------------------------A------C-----------------------TGCTT-----------TTTG---------ACTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------A--TA------A-TT--T--TCGG------T----------------T
droMoj3 scaffold_6473:10264379-10264728 - TTTACGACGA----AGAAGAAGGAAGCCGCCGCCGCCGACAAGGAAAACCTCTGGTGAGTTGAGCT---------GAGTAAGAA-TCTATAAATCTAT--GTGTATGTGTGTGTGT--GTGAGT-------------------------G---TG--------------------------------------------------------------------------------T----AGGGACTG----------------------------------------------------------------AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------ATATGACGAG-------------------------CAAAT---------------------TGCGCTTGGCCTAAACAGCTGCTATTGGCTAAGAATTTTATTTATTTATTTTTTTTATATAATATATTTGTTATTTATTTTTGTTTTTAAATTTAATTTTTCTATTTATTTATTTTTA---TTTTTTTGTTAT------TTATTTTTATTTAATTTTGTTGCATTTATTTATTTATTA----------------TTTT---------ACTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------A--TA------TATT--TTTT--T------T-----------GGC--A
droGri2 scaffold_15203:10352019-10352189 - GCCC-AGCAA----ATAT----------------------------------------------------------------------GTGTGCCTGT--GTGTGTGTG----------------TGTG-------TGTGTGTG--T---GTGTG--------------------------------------------------------------------------------T------GTGTGT--------------------------------------GTGTATGTG----------TGTGTGTGTG-------------TGTGTGTT---T------------------------------------------------------------------------------------------GATTCTGTGTACGTCCCTTTTTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTTTTGCGCCGGATAATAATAATCAGCGCGCTCCAATGCATACG---G--CT------AGTT--T--TTTG------T----------------T
droWil2 scf2_1100000004963:1126024-1126186 - AAGG-------ATTGT--------------------------------------------------------------------------------GT--ATGAG--TG----------------TGTG-------TGTGTGTG--T---GTGTG--------------------------------------------------------------------------------TGTGTG------------------------------------------------------TGTGTGTGTGCTTGTTTCTGTGT----GTGTAT--------------------------------------------------------------------------------------------------------------------------------TTTTTCTTTTTTTT----------TTTTTGTTTGCTTCGGAACCAATGGCATTTTTCAAAAGTGACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC--------------------------------------------GTG----CGCT---------------------------------------------T--TTGCTCT---TG--T--TTTGTTACAGT----------------C
dp5 XL_group1e:3378343-3378538 - TTTACAACAA----AGAAGAAGGATGCCGCCGC---GGAAAAGGAGAATCTGTGGTAAGT---------------GCACAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAACTCTAATTGTTGGATA------------------------------------GTAGAT-------------TTT--TTCC-----------------------------------------------CTGTCCC----------TCTCTCTCGCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTCTCTCGCCACTACTCTCTCCCCTGA------T-----------------------AAGTT-----------TTCA---------GCTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------G--TA------GATT--TGTG--C------T----------------A
droPer2 scaffold_17:315597-315792 - TTTACGACAA----AGAAGAAGGATGCCGCCGC---GGAAAAGGAGAATCTGTGGTAAGT---------------GCACAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAACTCTAATTGTTGGATA------------------------------------GTAGAT-------------TTT--TTCC-----------------------------------------------CTGTCCC----------TCTCTCTCGCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTCTCTCGCCACTACTCTCTCCCCTGA------T-----------------------AAGTT-----------TTCA---------GCTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------G--TA------GATT--TGTG--C------T----------------A
droAna3 scaffold_13047:104996-105145 + TGTG-------TGTGT--------------------------------------------------------------------------------GT--GTGTG--TG----------------TGTA-------TCTG--TG--AGTG---TG--------------------------------------------------------------------------------T------GG-------------------------------------------------------------CTTATGTACTCTCATGG------TA----TT---ATT--TTTTCC-----------------------------------------------TTGCGCCCTATGAACAATTTTTGTTGCTTC-------------------------------------------------------------------------------------------------------------------TGGTTCGC----------TTTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCC------A-----------------------TTTTTGCGTACTCTCC---------------------------------TTCTGGTT---------------------------------------------------------------------------------TGTGTGTGT----------------G
droBip1 scf7180000396691:1703140-1703215 + TACC-------TGTAT--------------------------------------------------------------------------------GT--GTATT--TGTGTGTGT--GTGTGT-------------------------G---TT------------------------------------------------------------------------------------------TTCAGCA---------------------------------------------------------TCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------TTATGCTTTG-------------------------TTTACATTTCCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------A----------------T
droKik1 scf7180000302592:520704-520908 + TGCA-------GCCCT--------------------------------------------------------------------------------CT--GTGTG--TG----------------TGTC-------TGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-------------CTC--TGCC-----------------------------------------------CTACCCC----------TCGCTCTCTCTCT--------------------------------------CTCTCTCTCTCTCTGTTTACATTGTTTACACGTATG------------------------CCACCGCTGCTGC-TGCTGGCCACCGTTCAACCGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATCCTTTTGCCTTCGTCCTTTTGGCG----------------TCTTTATTACAGCACTGCACTTAATAAACATTTGT---------------G-------------------------------------------------T--TA------A-A----TTT--C------T----------------G
droFic1 scf7180000454104:1167204-1167326 + TGTG-------CATGT--------------------------------------------------------------------------------AT--TTACG--TG----------------TGTG-------TGTGTGTG--A---GTGTG--------------------------------------------------------------------------------TGTGTG------------------------------------------------------TCTATGCGAGAGTGTGCCACTTTGTGC------TG------------------------------------------------------------------------------------------------------------------------------CCTTCCTTTCTTTT----------ATTTTATTTTTTATAGAAAAA------------------------TCAATTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--T--CCTT------T----------------T
droEle1 scf7180000491272:342185-342302 - TGTA-------TGTCT--------------------------------------------------------------------------------AT--GTGTGTTTGTGTGTGT--GTGTGT-------------------------G---TG--------------------------------------------------------------------------------T----TTGCAAGT--------------------------------------GTGCGTATGAGTG----------TGTGAG-------------TAAGCGTG---T------------------------------------------------------------------------------------------GTGTCTGTATTAGCCACTTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG------CTTATTGAACTGGGCAAA
droRho1 scf7180000779479:258832-258929 + AACA-------GATAC--------------------------------------------------------------------------------GT--ATACC--TG----------------CG--ATGTGTATGTG--TG--T--G---TA--------------------------------------------------------------------------------T----TTGT------------------------------------TCGGTGG------------------AAAATGTCTTTTCGAAA------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTG------------------------------------------TTTTATTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--T--ACTT------T----------------T
droBia1 scf7180000301703:198096-198246 - TGTG-------TGTGC--------------------------------------------------------------------------------GT--AGGGG--CG----------------CGTG-------TTTGTGTC--G---GTGTG--------------------------------------------------------------------------------T----GTGCACTG----------------------------------------GTGTGGG----------TGGCTGGGCG-------------AGTGTATT---GAA--CTCTTTCTGCATTTTTTGCACAATTTACCCGCTTTTGTTTTTTTTTCTTTTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACT--GTA----------------------------------------------------------------------------------------TC-------------------------------------------------A--TT------G-TG--T--TCAT------T----------------T
droTak1 scf7180000415394:549805-549889 - TTTT-------TTTGT--------------------------------------------------------------------------------TG--CTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCTACTTTTTTCGTGGC------A-----------------------TATTTTTTGACTTTGA---------------------------------CTTTAATT--CGTTTGCC-------------------------------------------------T--TTGCT---T-TT--T--TCCT------T----------------T
droEug1 scf7180000409006:261031-261189 + GAAA-------TGTAT--------------------------------------------------------------------------------AT--ACATG--TGTGTG--TGTGTG--TTTG---------------TG--T---GTGTG--------------------------------------------------------------------------------T----GTGTACTGGTCG---------------------------T--------------------------------CATTCG----GTTCTT-----------C--TTCTTTTTGTTCATCTTCTTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATTTTGCTGCATTTTATTTATTGTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCTGGATGT------------------------------------------------------------------------------TGTTGCATGCA-------------------------------------------------T--AC------A-TT--T--TGCA------T----------------T
dm3 chr3R:9455149-9455308 + GGCAAAAGAT----AA-ATATGCATGCGGTTGG----------------------------------------------------------------T--TT--ATGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAGCCA---------------------------------------------------------TTTCAACAG----ACGCGC-----------C--TCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------CGCCGCCTTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTTGC------------------ATGCAATAAAGATGG------------------------------------------------CGGGGCGATAACTAGGTTGCCTGCCA--TTG-TTTGC--CTTT------T----------------C
droSim2 3r:7038370-7038490 + GC-G-----TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------TGAATGCG--AGTG---CGCTGGTGTTGAAAAA-----------------------------------------------------------------------------------------------ATC------------------------------------------TATCTCTTCGCTA------CGCATTTTCAC--------------------------------CCC----------------------------CC----------GTTTTTGCGTATTTGA--------------------------TCTCTCTTCCTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--C--TCTA------T----------------C
droSec2 scaffold_21:353483-353650 - CTTG-------TGTGT--------------------------------------------------------------------------------GT--GTGTG--CG----------------TGTG-------TGCGTGTTACCACC---CGAAAATGTTGCCCCAATCGACTTAATTGATTTGTGGGCATAACCAACACATATTTACACTCAGTTCGTATCTGCGTGTGTGT------GT------------------------------------GCG------------TTCT----------CATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATT-----------TACT----------------------------------GCTTACATATGCG-------------------------------------------------A--GT------G-TG--T--GCTT------T----------------T
droYak3 X:8048090-8048265 + TGTATGTCGT----AT------------------------------------------------------------------------------------GTGTG--TA--------TGTG--TACG-----------TG--TA--C-----GTG--------------------------------------------------------------------------------T----GTGTCTTGAGCTTATACCGAAAAAAATTGTTTACAACTTTTGAAG------------------------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAG---------------------------------------------------------------------------------------GTTTCCAATGTCCTGCTATTTGTTTACCTCATTACATTACTATATATAAATG------------------------------------------------------------------------------TGTGTAGATATCATATTCA-------------------------------------------------T--TA------A-CT--T--GACT------T----------------T
droEre2 scaffold_4690:1041725-1041885 + TGTG-------CGTGC--------------------------------------------------------------------------------GT--GTGTG--TG----------------TGTGAGCTGTATCTG--TG--G---GTGTG--------------------------------------------------------------------------------T------GT------------------------------------GCACACAGATACAGG----------CTTATGTACT-------------CGTGTTTTTTC--------------------------------CCCACTTTTCTGTTTTTTTTTTTTGCTCGCGCCCTACGAAAAA---------------------------------------------------------------------------------------------------------------TTTGTTTTG-------------------------CTCTCAATGCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CG--T--TTGG------T----------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTACGACGA----AAAAGAAGGATGCCGCCGCAGCCGACAAGGAGAATCTCTGGTGAGTTGAGCTTTAGCCTAGGCACAAGAAATGTGCATGC--CT--GTGTG--TG------TGTGTG--TGTG---------------TC--T---GTGTG--------------------------------------------------------------------------------T----GTGCACTCAGCG---------------------------------------------------------TTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------ATATGGCGCG-------------------------CCTATTTTTCTTCTTTGTTTTTTTCTTGCTTTTAGGCAAATCAGCTGCTTTTGGCCA--------------------------------------------------------------------------------------------------------------------A------C-----------------------TGCTT-----------TTTG---------ACTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------A--TA------A-TT--T--TCGG------T----------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.TTACGACGA----AAAAGAAGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000010100000000000000000000000000000000000000000000000
...............AAAGAAGGATGCCGCCGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
TTTACGACGA----AAAAGAAGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
........GA----AAAAGAAGGATGCCGCCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
....CGACGA----AAAAGAAGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
..TACGACGA----AAAAGAAGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
....................AGGATGCCGCCGCAGCCGACAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...ACGACGA----AAAAGAAGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................GTG--TGTG---------------TC--T---GTGTG--------------------------------------------------------------------------------T----GTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTTACGACGA----AGAAGAAGGAAGCCGCCGCCGCCGACAAGGAAAACCTCTGGTGAGTTGAGCT---------GAGTAAGAA-TCTATAAATCTAT--GTGTATGTGTGTGTGT--GTGAGT-------------------------G---TG--------------------------------------------------------------------------------T----AGGGACTG----------------------------------------------------------------AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------ATATGACGAG-------------------------CAAAT---------------------TGCGCTTGGCCTAAACAGCTGCTATTGGCTAAGAATTTTATTTATTTATTTTTTTTATATAATATATTTGTTATTTATTTTTGTTTTTAAATTTAATTTTTCTATTTATTTATTTTTA---TTTTTTTGTTAT------TTATTTTTATTTAATTTTGTTGCATTTATTTATTTATTA----------------TTTT---------ACTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------A--TA------TATT--TTTT--T------T-----------GGC--ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............GAAGAAGGAAGCCGCCGCCGCCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
TTTACGACGA----AGAAGAAGGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GCCC-AGCAA----ATAT----------------------------------------------------------------------GTGTGCCTGT--GTGTGTGTG----------------TGTG-------TGTGTGTG--T---GTGTG--------------------------------------------------------------------------------T------GTGTGT--------------------------------------GTGTATGTG----------TGTGTGTGTG-------------TGTGTGTT---T------------------------------------------------------------------------------------------GATTCTGTGTACGTCCCTTTTTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTTTTGCGCCGGATAATAATAATCAGCGCGCTCCAATGCATACG---G--CT------AGTT--T--TTTG------T----------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAGG-------ATTGT--------------------------------------------------------------------------------GT--ATGAG--TG----------------TGTG-------TGTGTGTG--T---GTGTG--------------------------------------------------------------------------------TGTGTG------------------------------------------------------TGTGTGTGTGCTTGTTTCTGTGT----GTGTAT--------------------------------------------------------------------------------------------------------------------------------TTTTTCTTTTTTTT----------TTTTTGTTTGCTTCGGAACCAATGGCATTTTTCAAAAGTGACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC--------------------------------------------GTG----CGCT---------------------------------------------T--TTGCTCT---TG--T--TTTGTTACAGT----------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............TGT--------------------------------------------------------------------------------GT--ATGAG--TG----------------TGTG-------TGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
......................................................................................................GAG--TG----------------TGTG-------TGTGTGTG--T---GTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
TTTACAACAA----AGAAGAAGGATGCCGCCGC---GGAAAAGGAGAATCTGTGGTAAGT---------------GCACAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAACTCTAATTGTTGGATA------------------------------------GTAGAT-------------TTT--TTCC-----------------------------------------------CTGTCCC----------TCTCTCTCGCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTCTCTCGCCACTACTCTCTCCCCTGA------T-----------------------AAGTT-----------TTCA---------GCTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------G--TA------GATT--TGTG--C------T----------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................GAAGGATGCCGCCGC---GGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......CAA----AGAAGAAGGATGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTCTCTCG.....................................................................................................................................................................................................................2111.0010100000000
................AAGAAGGATGCCGCCGC---GGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
TTTACAACAA----AGAAGAAGGATGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
droPer2
TTTACGACAA----AGAAGAAGGATGCCGCCGC---GGAAAAGGAGAATCTGTGGTAAGT---------------GCACAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAACTCTAATTGTTGGATA------------------------------------GTAGAT-------------TTT--TTCC-----------------------------------------------CTGTCCC----------TCTCTCTCGCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTCTCTCGCCACTACTCTCTCCCCTGA------T-----------------------AAGTT-----------TTCA---------GCTT---------------TCTTTAGCTGACGTTTGCA-------------------------------------------------G--TA------GATT--TGTG--C------T----------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCTCTCGCCACTACTCT...........................................................................................................................................................................................................2111.001010000
.TTACGACAA----AGAAGAAGGATGCCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......CAA----AGAAGAAGGATGCCGCCGC---GGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................GGAAAAGGAGAATCTGTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............GAAGAAGGATGCCGCCGC---GGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................AGAAGGATGCCGCCGC---GGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droAna3
TGTG-------TGTGT--------------------------------------------------------------------------------GT--GTGTG--TG----------------TGTA-------TCTG--TG--AGTG---TG--------------------------------------------------------------------------------T------GG-------------------------------------------------------------CTTATGTACTCTCATGG------TA----TT---ATT--TTTTCC-----------------------------------------------TTGCGCCCTATGAACAATTTTTGTTGCTTC-------------------------------------------------------------------------------------------------------------------TGGTTCGC----------TTTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCC------A-----------------------TTTTTGCGTACTCTCC---------------------------------TTCTGGTT---------------------------------------------------------------------------------TGTGTGTGT----------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................T---ATT--TTTTCC-----------------------------------------------TTGCGCCCTATGAACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
TACC-------TGTAT--------------------------------------------------------------------------------GT--GTATT--TGTGTGTGT--GTGTGT-------------------------G---TT------------------------------------------------------------------------------------------TTCAGCA---------------------------------------------------------TCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------TTATGCTTTG-------------------------TTTACATTTCCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------A----------------TSizeHit CountTotal NormTotal
No Reads
droKik1
TGCA-------GCCCT--------------------------------------------------------------------------------CT--GTGTG--TG----------------TGTC-------TGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-------------CTC--TGCC-----------------------------------------------CTACCCC----------TCGCTCTCTCTCT--------------------------------------CTCTCTCTCTCTCTGTTTACATTGTTTACACGTATG------------------------CCACCGCTGCTGC-TGCTGGCCACCGTTCAACCGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATCCTTTTGCCTTCGTCCTTTTGGCG----------------TCTTTATTACAGCACTGCACTTAATAAACATTTGT---------------G-------------------------------------------------T--TA------A-A----TTT--C------T----------------GSizeHit CountTotal NormTotal
No Reads
droFic1
TGTG-------CATGT--------------------------------------------------------------------------------AT--TTACG--TG----------------TGTG-------TGTGTGTG--A---GTGTG--------------------------------------------------------------------------------TGTGTG------------------------------------------------------TCTATGCGAGAGTGTGCCACTTTGTGC------TG------------------------------------------------------------------------------------------------------------------------------CCTTCCTTTCTTTT----------ATTTTATTTTTTATAGAAAAA------------------------TCAATTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--T--CCTT------T----------------TSizeHit CountTotal NormTotal
No Reads
droEle1
TGTA-------TGTCT--------------------------------------------------------------------------------AT--GTGTGTTTGTGTGTGT--GTGTGT-------------------------G---TG--------------------------------------------------------------------------------T----TTGCAAGT--------------------------------------GTGCGTATGAGTG----------TGTGAG-------------TAAGCGTG---T------------------------------------------------------------------------------------------GTGTCTGTATTAGCCACTTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG------CTTATTGAACTGGGCAAASizeHit CountTotal NormTotal
No Reads
droRho1
AACA-------GATAC--------------------------------------------------------------------------------GT--ATACC--TG----------------CG--ATGTGTATGTG--TG--T--G---TA--------------------------------------------------------------------------------T----TTGT------------------------------------TCGGTGG------------------AAAATGTCTTTTCGAAA------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTG------------------------------------------TTTTATTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--T--ACTT------T----------------TSizeHit CountTotal NormTotal
No Reads
droBia1
TGTG-------TGTGC--------------------------------------------------------------------------------GT--AGGGG--CG----------------CGTG-------TTTGTGTC--G---GTGTG--------------------------------------------------------------------------------T----GTGCACTG----------------------------------------GTGTGGG----------TGGCTGGGCG-------------AGTGTATT---GAA--CTCTTTCTGCATTTTTTGCACAATTTACCCGCTTTTGTTTTTTTTTCTTTTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACT--GTA----------------------------------------------------------------------------------------TC-------------------------------------------------A--TT------G-TG--T--TCAT------T----------------TSizeHit CountTotal NormTotal
No Reads
droTak1
TTTT-------TTTGT--------------------------------------------------------------------------------TG--CTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCTACTTTTTTCGTGGC------A-----------------------TATTTTTTGACTTTGA---------------------------------CTTTAATT--CGTTTGCC-------------------------------------------------T--TTGCT---T-TT--T--TCCT------T----------------TSizeHit CountTotal NormTotal
No Reads
droEug1
GAAA-------TGTAT--------------------------------------------------------------------------------AT--ACATG--TGTGTG--TGTGTG--TTTG---------------TG--T---GTGTG--------------------------------------------------------------------------------T----GTGTACTGGTCG---------------------------T--------------------------------CATTCG----GTTCTT-----------C--TTCTTTTTGTTCATCTTCTTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATTTTGCTGCATTTTATTTATTGTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCTGGATGT------------------------------------------------------------------------------TGTTGCATGCA-------------------------------------------------T--AC------A-TT--T--TGCA------T----------------TSizeHit CountTotal NormTotal
No Reads
dm3
GGCAAAAGAT----AA-ATATGCATGCGGTTGG----------------------------------------------------------------T--TT--ATGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAGCCA---------------------------------------------------------TTTCAACAG----ACGCGC-----------C--TCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------CGCCGCCTTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTTGC------------------ATGCAATAAAGATGG------------------------------------------------CGGGGCGATAACTAGGTTGCCTGCCA--TTG-TTTGC--CTTT------T----------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGG------------------------------------------------CGGGGCGATAACCGC....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................TT--ATGTGTGTGTGT--GTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.55110000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000008000
................................G----------------------------------------------------------------T--TT--ATGTGTGTGTGT--GTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.1930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
....................................................................................................TT--ATGTGTGTGTGT--GTGTGT-------------------------G---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................TT--ATGTGTGTGTGT--GTGTGT-------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.....................................................................................................T--ATGTGTGTGTGT--GTGTGT-------------------------G---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000
....................................................................................................TT--ATGTGTGTGTGT--GTGTGT-------------------------G---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
..........................................................................................................GTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................................ATGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................TGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGTGTGTGTGT--GTGTGT-------------------------G---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................T--ATGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................TGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................GTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................ATGTGTGTGTGT--GTGTGT-------------------------G---TG------------------------------------------------------------------------------------------TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
droSim2
GC-G-----TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------TGAATGCG--AGTG---CGCTGGTGTTGAAAAA-----------------------------------------------------------------------------------------------ATC------------------------------------------TATCTCTTCGCTA------CGCATTTTCAC--------------------------------CCC----------------------------CC----------GTTTTTGCGTATTTGA--------------------------TCTCTCTTCCTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--C--TCTA------T----------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2082.5020000000000019100000
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.90900000000008100000
.............TG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------TGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.33400000000004000000
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.15200000000002000000
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
..........GCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGTG---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17150.07100000000001000000
..........GCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------TGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
...G-----TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.........TGCGTG----------------------------------------------------------------------------------TGTCT--G--TG--------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
CTTG-------TGTGT--------------------------------------------------------------------------------GT--GTGTG--CG----------------TGTG-------TGCGTGTTACCACC---CGAAAATGTTGCCCCAATCGACTTAATTGATTTGTGGGCATAACCAACACATATTTACACTCAGTTCGTATCTGCGTGTGTGT------GT------------------------------------GCG------------TTCT----------CATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATT-----------TACT----------------------------------GCTTACATATGCG-------------------------------------------------A--GT------G-TG--T--GCTT------T----------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGTATGTCGT----AT------------------------------------------------------------------------------------GTGTG--TA--------TGTG--TACG-----------TG--TA--C-----GTG--------------------------------------------------------------------------------T----GTGTCTTGAGCTTATACCGAAAAAAATTGTTTACAACTTTTGAAG------------------------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAG---------------------------------------------------------------------------------------GTTTCCAATGTCCTGCTATTTGTTTACCTCATTACATTACTATATATAAATG------------------------------------------------------------------------------TGTGTAGATATCATATTCA-------------------------------------------------T--TA------A-CT--T--GACT------T----------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTG-------CGTGC--------------------------------------------------------------------------------GT--GTGTG--TG----------------TGTGAGCTGTATCTG--TG--G---GTGTG--------------------------------------------------------------------------------T------GT------------------------------------GCACACAGATACAGG----------CTTATGTACT-------------CGTGTTTTTTC--------------------------------CCCACTTTTCTGTTTTTTTTTTTTGCTCGCGCCCTACGAAAAA---------------------------------------------------------------------------------------------------------------TTTGTTTTG-------------------------CTCTCAATGCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CG--T--TTGG------T----------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 04:15 AM