dvi_13979

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAACAACACGTCAAACAGCAGCAGCAAGAACAACAGCAACAACAAGGGTGTAAGTGACAAAACTTTCAAAATATTTGAATCAAATAGAAACCAGTTATTAACCAACATTTTGCCAAAAACCATGCTCATGTTAAAGTTCAAGTGCGTTGACCGGACGAAGTGAAATAAAATTTTGCAAAAAGCTTGCGAAAAGTTAGAGTGCTAATTGCAATTCGGTGTTGCATATGTGCAATGTGTTGCAAGGTGGCAG ************************************************((.((((((.....((((....((((((...))))))))))...)))))).))...(((((((((...(((((((((........)))....))).)))....)).)))))))...(((..((((((((.....))))))))..)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	SRR060676 9xArg_ovaries_total	GSM1528803 follicle cells	SRR060689 160x9_testes_total	M027 male body	SRR060674 9x140_ovaries_total	V053 head	V116 male body	SRR060662 9x160_0-2h_embryos_total
......................CAGCAAGAACAACAGCAACAAC...............................................................................................................................................................................................................	22	0	3	0.33	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGCAGTGTCTTGCAAGGTGGC..	21	2	3	0.33	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGCTAAATGCATTTCGGGGT...............................	20	3	18	0.22	4	0	0	4	0	0	0	0	0	0
..................................AAGCAACAACAAGGGTGGA......................................................................................................................................................................................................	19	2	5	0.20	1	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAAAGTTGGAGGGCAAATT...........................................	21	3	9	0.11	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................AAAAGCTGGCGACAAGTTAGT....................................................	21	3	9	0.11	1	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................GCAATGCGTTGTAAGGCGGC..	20	3	13	0.08	1	0	0	0	0	0	0	1	0	0
................................AACAGCAAAAACAAGGTCGTA......................................................................................................................................................................................................	21	3	19	0.05	1	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................ATTTTCCAAAAAGCTGGCGG.............................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1

TGTTGTTGTGCAGTTTGTCGTCGTCGTTCTTGTTGTCGTTGTTGTTCCCACATTCACTGTTTTGAAAGTTTTATAAACTTAGTTTATCTTTGGTCAATAATTGGTTGTAAAACGGTTTTTGGTACGAGTACAATTTCAAGTTCACGCAACTGGCCTGCTTCACTTTATTTTAAAACGTTTTTCGAACGCTTTTCAATCTCACGATTAACGTTAAGCCACAACGTATACACGTTACACAACGTTCCACCGTC ************************************************((.((((((.....((((....((((((...))))))))))...)))))).))...(((((((((...(((((((((........)))....))).)))....)).)))))))...(((..((((((((.....))))))))..)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	GSM1528803 follicle cells	SRR060679 140x9_testes_total	SRR060685 9xArg_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060664 9_males_carcasses_total	V116 male body
..................................................................................................................................................................................................AATCACACGAGTAAGGTTAA.....................................	20	3	20	0.20	4	1	0	0	0	1	1	1
.....................................................................................................................................................................................TGGAACGCTGTACAATCTC...................................................	19	3	18	0.11	2	1	0	1	0	0	0	0
..........CAGTTTGTCGTCGTCGGTGTTT...........................................................................................................................................................................................................................	22	3	20	0.10	2	0	2	0	0	0	0	0
...........................................................................................................................................GTCCGCGCTACTGGCCTG..............................................................................................	18	3	19	0.05	1	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:11067280-11067530 -	dvi_13979	ACAAC--AACACGTCAAA---------------------------------------CAGCAGCAGCAAGAACAACA---------G-------CA---------------------------------------ACAACA----------------------------------------------------------------------------------------------------------------AG-GGTGTAAG-TGACAAAACTT-----------------------------------------------------------------------------------------TCA--AAA-TATTTGAA-TCAAATAGA-A------------------------ACCAGTTATTAACCAACATTTT---------------GC------------------------------CAAAAAC----CATGCTCATGT------TAAAGTTCAAGTGCGTTGACCG---------------------------GACGAAGT---GAAATAAAATTTT-------GCAA------------AAAGCTTGCGAAAAGTTAGAGTGCTA------------------------------------------------ATTGCAATT---------------------------------------------CGGTGT-------------------TGCATATGTGCAATGTGTT---------G-----------------------------------------CAAGGTGG--CAG
droMoj3	scaffold_6473:10293249-10293537 +		GCAGC--AACACGTCAAA---------------------------------------CAACAGCAGCAGCAACAGCA---------A-------CA---------------------------------------GCAGCAAAAACAACAA------C-------------------AAT------------------------------------------------------------------------AA-AGGTGTAAG-TA-------TT--------TCACTATACTATTCTTAACGAATC---------------------------------GCAGCAAAAT------------------------GCC------------------------------------------------------A-------------AAGT---AA-------------------------------------------CATGCTCATGT------CAAAGTTCATGTTAGTTGACAACTGCAATTGCCATGAACATTCCTGCTCGACAATGTATTGAAATTAGGTCTGTTTGCCATTTCAAATAAGACACTATAAAA---------CTAT------------------------------------AATATTTACTAA-CATTCGTCAACTATT----TT----------------------TAGCTAAAGTTGAAAA--------------------------------------------------------------------------------------------------GTGAAG--TAA
droGri2	scaffold_15252:15705278-15705539 -		ACAAC--AAAATGTGA-------A---------------------------------CAGCAATTGAA------------AGCA---------TTGCAA-----------------------------------------------------ATTGAAAATTTACCAAATAAAAAAA----AGAAAACAAAAAATTGTTGGCAAATATTTTGGCCTGCGTGCGAGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CAACACC-----------CATTTTGC---------------TC------------------------------TAACGCA----AAAACCCAACA-------AAAAA------------------------------------------------------------------------------------------------TGTAAAACATGAAAATATCAATTCAACGCCAAACATTTTAGTTTTGACAAATATTTCCGT-AGTTTTATTTGCAGTTTATTTTTGCTGT-------------------------------------------------------------------------TGCTTTTGTTGTTG-----------------------------------------CT---AGG--TGA
droWil2	scf2_1100000004902:723496-723702 +		GCAAG--CAATA-----------ACGGCAATGGCCACCAATGCAATGGCAATAGCAACAA------CACAAA---TGGCA-------------------------------------------------------AC---------TG---------C-------------------AGTAAGTT------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------CA--AAC-TCT-------------------------GCC------------------------------AAAAAAGAAAAGAGTAAC--A------TCATCGAGACTCGAGAGAGTCTTGGGGAGAAA----CAC------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACATATTTGCGCTTAATTTATTAGCAGTT----------------T----------------------------------------------------TTGAATATTTGCAAAATGCTTGAG---------------------------------------------AAACAGAAAA--GTG
dp5	Unknown_singleton_1326:1197-1387 -		ATAAA--AATACTC-AAACTCAAACAGCAACCGAA---------------------------------------------ACAAAA-------GGACAGAAAAAAGAAAATAATAAAAATAATCAATAATAATAATAAGCA-A----------------------------------------------------------------------------------TATGCTGCATATATTGCAGAAATTACC-GAG-CTCA-A--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATCTCAAATTAACTGAGCAAATTGGAAAACTCATCGAACATATGCAAAATACT------------------------------------------------------AGCTC--AAA
droPer2	scaffold_0:10927017-10927190 -		ACAGC--AGCAGCAGCAG---------------------------------------CAA------CACAAA---TAGCAATAGCAA-------GG---------------------------------------AC---------TG---------C-------------------AGTAAGTT------------------------------------------TGG-----------------------------------------GGGTC-----------------------------------------------------------------CTGCCAAAAT------------------------GCCAAAA-AC-GAA--A----------------------GGA-CCCAACCATCGAG---CG-------------------A------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAGAGCCAACACATATTTACGCTTAATTTATTAGCAGTT----------------T----------------------------------------------------TTGAATATTTGCAAAGTGCT--------------------------------------------------------TGA--GGA
droAna3	scaffold_13137:1118173-1118376 -		ACAAC--AAAATCACTAA----------------------------------------ACCAACAGCAGAAATTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTCTTTTAGTTGTATAACTTTTT-AGT-TTTA-T--------AACTTAAATATAA------------TTTTAATTAAAA-------------------------------A--AAAAAAAA-G-------------------------------------------------------T------CAATATG-----------TCGACAAAAGAAAAAATCGCT--A------TTATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCCC-------------------------------------------------T-TCT----------------CGCAAAA----A--ATT
droBip1	scf7180000396359:119112-119235 -		ACAGG--AGAAGCAGAAG---------------------------------------CAGCAGCAGCAGCAGCATCA---------G-------CA---------------------------------------ACGGTAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------GCAACCAACA-------------------------------ACCAAACAACA-G-------------------------------------------------------G------CAACAAC-----------CAGGCAAC---------------AT------------------------------CAACAAA----ACAGCTACAAT------AAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------A---TTTAAAAGCC
droKik1	scf7180000302260:77487-77643 -		GCAGT--AACATTAAACA---------------------------------------CAGCAGCAACAGCAGCAGCA---------G-------CA---------------------------------------ACACC----------------------------------------------------------------------------------------------------------------CA-AACTCC-A----------------------------------------------------------------------------------------AGCAAACACAAATTTCC--AGC-CACTCT---TTAGGTAGA-A------------------------ATTATTTA------A-----------------------ACATTT-TTAAACAAAACT----TCCTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATAAAAAATTAAAAA--------------------------------------------------------TAAAAGTAA--AG--------------------------------TGC--GTT
droFic1	scf7180000454096:1059597-1059794 +		TCAAC--ATCAA-----------ACGGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TTACCGAA-AACTTGAA-CAAAAA--A-AAACAAT-CTCTTCA------ATAAACC-----------CAAACTAA---------------AC------------------------------AAAAAAT----AAAACCCATTA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTAAAA---------------TACACGAAAAAAATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG
droEle1	scf7180000491023:264590-264747 -		ACAAC--AACACTAGCAA---------------------------------------CAACATTAGCAGCAACAACA---------C-------CA---------------------------------------ACAACAACACCAACAA------C-------------------AAC--------------------------------------------------------------------------------------------ACTA-----------------------------------------------------------------------------------------GCA--ACAGCAGCAGC--------------------AACAACA------AGAAGCC-----------TTGGCTAA---------------GC------------------------------AAACAAA----AAA--------------------------------------------------------------------------------AATGTAT-------ATGT------------AAAAAACCGAAAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--AAGGC-TTT----------------A------ACAAA--AAG
droRho1	scf7180000768936:3582-3730 +		GCAGC--AACAAGG------------ACCAA--------------------------CAGCAACAACAAAAACAACA---------A-------CA---------------------------------------GTGGCAGGAGCGGCAG------C-------------------GCA------------------------------------------------------------------------AA-CAGTAA---------------------------------------------------------------------------------------------------------------A-AACAAAAA-CAAATC-------------------------------------------A-------------AAGT---AA-------------------------------------------CAAACTGAG-------------------------------------------------------------------------------------------C------------AAAAAGTTGAGCTGGCAAAATTGCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCTTCAAGACAAGGAG--AAA
droBia1	scf7180000302155:882848-883038 +		TCAAC--ATCAA-----------ACGGCTCTCGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CAAA------AACCAAATCTCTTCA------ATAAACC-----------CAAACTAA---------------AC------------------------------AAAAAAT----AA-ACCCATTA-------AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--------------GTACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG
droTak1	scf7180000415779:1002853-1003026 +		TTGTC--AAAACATCAGG---------------------------------------ATGGAGT----------------------CAAGCGAGGACACCGTAAAAAAGT-----------------------------CTTTG------GAAATTAAAATTAATTAAATTATAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA------------------------------------------------GCCAAAAG----ATTCTGC-GAAAAACAATTAAA-GGTATTTCCATGTTAAATATACACTACACCCAGAA---------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGACCTAAAATG-------TCAAA--AAA
droEug1	scf7180000409089:73596-73783 +		ACAGGTCAACACTCATTA---AAA---------------------------------AAAAAATTAAAAAATCAAAA---------G-------CA---------------------------------------AAATA-----------------------------------------------------------------------------------------------------------------AA-AATGCACAGAGAGAAAATAT-----------------------------------------------------------------------------------------ATT--ACT-TACTTACA-CCAC-------------------AAACATAAAGG-CCTTATCAGCAAA---AGCCTT-------AAA---AA-------------------------------------------CATG----ACT-------CAAAATTAAATAAATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAAAAAGTTAAAAAGAAAG---------------------------------------------------------AAA--ACAAC-T-------------------------TTTAA--AAA
dm3	chr3R:3686716-3686908 -		ACATC--AAAC--------------GGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CCAATCAAA-AACCAAA-CTCTTCA------ATAAACC-----------CAAGCTAA---------------AC------------------------------CAAAATT----AAAGCCCATTT------AAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA---------------TACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG
droSim2	x:1408030-1408211 +		ACTAGCCACAG----CAA------------CAG------------------------CAACAACAACAGAAA---CAGCAACAAAAC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------TCAACAAACCGTTTTATTACCATTTTATTTCCATGCGTTTTCCCCAAAAAAAA------------------------GCC------------------------------------------------------AAAACCAA---------------AA------------------------------AAAGGAA------------------------------------------------------------------------------------ATGAGAACCA-------ACCC------------GAAACTCCGAAAACGTGAGATTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCACTCCGAAAATGAAT--CTG
droSec2	scaffold_1:7444036-7444231 +		ACAAC--AACAAAAGAAA---------------------------------------CATCAACGACAACGGCAAT------ATAAC-------AA---------------------------------------AA---------GA---------A-------------------AACAAATTAAAAAGAAA-----------TA----------------------C---------TAAAATATGCACTTA-AACTTA-A----------------------------------------------------------------------------------------TGAAGAAATAAAGTGTT--CGG-AGTGCT---AAAAAATGT-T------------------------AGTGTTTG------A-----------------------AAAGTG-AAAAGCGAAACA----ATTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCAAACA--------------------------------------------------------------------------------------------TGAAGAGTTACAGTAC-------------------------------------------------T-TTT----------------T------AATCG--CAA
droYak3	X:17915140-17915347 +		AGGCA--GGGAGAATCCA---------------------------------------AAGAG-GGCAAGAAA-------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------GT-GGTGCACG-ATTAAAAAATA-----------------------------------------------------------------------------------------TAA--AAA-CATATAAGATAAGTT--AATACCTTT-CGCTTAA------GCTTAGA-----------CAGTACTT---------------GC------------------------------CAAAACT----TGAATACTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATAATAAATATTTTTGAAATGGCAGGTTGGCAGTTTGCAATAAGCGGAAC-------------------CACTGTGCAATGTCCT-------------------------------------------------TGCAAGGCTG--CGG
droEre2	scaffold_4770:3925734-3925924 -		ACATC--AAAC--------------GGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CAAATC--AAAACCAAA-CTCTTCA------ATAAACC-----------CAAGCTAA---------------AC------------------------------CAAAATT----AAAACCCATTT-------AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA---------------TACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACAAC--AACACGTCAAA---------------------------------------CAGCAGCAGCAAGAACAACA---------G-------CA---------------------------------------ACAACA----------------------------------------------------------------------------------------------------------------AG-GGTGTAAG-TGACAAAACTT-----------------------------------------------------------------------------------------TCA--AAA-TATTTGAA-TCAAATAGA-A------------------------ACCAGTTATTAACCAACATTTT---------------GC------------------------------CAAAAAC----CATGCTCATGT------TAAAGTTCAAGTGCGTTGACCG---------------------------GACGAAGT---GAAATAAAATTTT-------GCAA------------AAAGCTTGCGAAAAGTTAGAGTGCTA------------------------------------------------ATTGCAATT---------------------------------------------CGGTGT-------------------TGCATATGTGCAATGTGTT---------G-----------------------------------------CAAGGTGG--CAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................CAGCAAGAACAACA---------G-------CA---------------------------------------ACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAGC--AACACGTCAAA---------------------------------------CAACAGCAGCAGCAACAGCA---------A-------CA---------------------------------------GCAGCAAAAACAACAA------C-------------------AAT------------------------------------------------------------------------AA-AGGTGTAAG-TA-------TT--------TCACTATACTATTCTTAACGAATC---------------------------------GCAGCAAAAT------------------------GCC------------------------------------------------------A-------------AAGT---AA-------------------------------------------CATGCTCATGT------CAAAGTTCATGTTAGTTGACAACTGCAATTGCCATGAACATTCCTGCTCGACAATGTATTGAAATTAGGTCTGTTTGCCATTTCAAATAAGACACTATAAAA---------CTAT------------------------------------AATATTTACTAA-CATTCGTCAACTATT----TT----------------------TAGCTAAAGTTGAAAA--------------------------------------------------------------------------------------------------GTGAAG--TAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................AACAGCAGCAGCAACAGCA---------A-------CA---------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.70	14	0	4	0	0	10	0
.................................................................GCAGCAACAGCA---------A-------CA---------------------------------------GCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..........................................................AACAGCAGCAGCAACAGCA---------A-------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................AGCAGCAACAGCA---------A-------CA---------------------------------------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

ACAAC--AAAATGTGA-------A---------------------------------CAGCAATTGAA------------AGCA---------TTGCAA-----------------------------------------------------ATTGAAAATTTACCAAATAAAAAAA----AGAAAACAAAAAATTGTTGGCAAATATTTTGGCCTGCGTGCGAGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CAACACC-----------CATTTTGC---------------TC------------------------------TAACGCA----AAAACCCAACA-------AAAAA------------------------------------------------------------------------------------------------TGTAAAACATGAAAATATCAATTCAACGCCAAACATTTTAGTTTTGACAAATATTTCCGT-AGTTTTATTTGCAGTTTATTTTTGCTGT-------------------------------------------------------------------------TGCTTTTGTTGTTG-----------------------------------------CT---AGG--TGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GCAAG--CAATA-----------ACGGCAATGGCCACCAATGCAATGGCAATAGCAACAA------CACAAA---TGGCA-------------------------------------------------------AC---------TG---------C-------------------AGTAAGTT------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------CA--AAC-TCT-------------------------GCC------------------------------AAAAAAGAAAAGAGTAAC--A------TCATCGAGACTCGAGAGAGTCTTGGGGAGAAA----CAC------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACATATTTGCGCTTAATTTATTAGCAGTT----------------T----------------------------------------------------TTGAATATTTGCAAAATGCTTGAG---------------------------------------------AAACAGAAAA--GTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

ATAAA--AATACTC-AAACTCAAACAGCAACCGAA---------------------------------------------ACAAAA-------GGACAGAAAAAAGAAAATAATAAAAATAATCAATAATAATAATAAGCA-A----------------------------------------------------------------------------------TATGCTGCATATATTGCAGAAATTACC-GAG-CTCA-A--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATCTCAAATTAACTGAGCAAATTGGAAAACTCATCGAACATATGCAAAATACT------------------------------------------------------AGCTC--AAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTCATCGAACATATGCA.......................................................................	23	1	8.00	8	0	2	0	0	0	0	0	0	6	0
.........TACTC-AAACTCAAACAGCAACCGAA---------------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	6.00	6	0	1	0	0	0	0	0	4	1	0
................................................................................................................................................................................................................................................GCAGAAATTACC-GAG-CTCA-A--------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	4	0	0	1	0	0	0	0	0
....A--AATACTC-AAACTCAAACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	1	0	0	0	0	0	4	0	0
...........CTC-AAACTCAAACAGCAACCGAA---------------------------------------------ACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	1	3	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTCATCGAACATATGC........................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCATCGAACATATGCAAAATAC.................................................................	24	1	3.00	3	0	0	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCATCGAACATATGCAAAATACT------------------------------------------------------..........	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTCAAATTAACTGAGCAA.................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........CTC-AAACTCAAACAGCAACCGAA---------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	0	0	1	0
...........CTC-AAACTCAAACAGCAACCGAA---------------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	1	0
.........TACTC-AAACTCAAACAGCAACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........ACTC-AAACTCAAACAGCAACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........ACTC-AAACTCAAACAGCAACCGAA---------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TATTGCAGAAATTACC-GAG-CTCA-A--------AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCATCGAACATATGCAAAATAC.................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................TAATAATAATAAGCA-A----------------------------------------------------------------------------------TATGCTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.........................AGCAACCGAA---------------------------------------------ACAAAA-------GGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CAGAAATTACC-GAG-CTCA-A--------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTCATCGAACATATGCAAAA....................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATATTGCAGAAATTACC-GAG-CTCA-A--------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................CAAAA-------GGACAGAAAAAAGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...AA--AATACTC-AAACTCAAACAGCAACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TCA-A--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATCTCAAATTA..........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCATCGAACATATGCAAAATA..................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TTGCAGAAATTACC-GAG-CTCA-A--------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CAGCAACCGAA---------------------------------------------ACAAAA-------GGACAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....A--AATACTC-AAACTCAAACAGCAACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................AACTCAAACAGCAACCGAA---------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TACTC-AAACTCAAACAGCAACCGAA---------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................A-------GGACAGAAAAAAGAAAATAATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................GCAGAAATTACC-GAG-CTCA-A--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.TAAA--AATACTC-AAACTCAAACAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......AATACTC-AAACTCAAACAGCAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ACTC-AAACTCAAACAGCAACCGAA---------------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTAACTGAGCAAATTGG............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTCATCGAACATATGCAA......................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACTCATCGAACATATGCAAAATA..................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................TGCAGAAATTACC-GAG-CTCA-A--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA.....................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................AA-------GGACAGAAAAAAGAAAATAATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............C-AAACTCAAACAGCAACCGAA---------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCATCGAACATATGCAAAATA..................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

ACAGC--AGCAGCAGCAG---------------------------------------CAA------CACAAA---TAGCAATAGCAA-------GG---------------------------------------AC---------TG---------C-------------------AGTAAGTT------------------------------------------TGG-----------------------------------------GGGTC-----------------------------------------------------------------CTGCCAAAAT------------------------GCCAAAA-AC-GAA--A----------------------GGA-CCCAACCATCGAG---CG-------------------A------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAGAGCCAACACATATTTACGCTTAATTTATTAGCAGTT----------------T----------------------------------------------------TTGAATATTTGCAAAGTGCT--------------------------------------------------------TGA--GGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
ACAGC--AGCAGCAGCAG---------------------------------------CAA------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

ACAAC--AAAATCACTAA----------------------------------------ACCAACAGCAGAAATTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTCTTTTAGTTGTATAACTTTTT-AGT-TTTA-T--------AACTTAAATATAA------------TTTTAATTAAAA-------------------------------A--AAAAAAAA-G-------------------------------------------------------T------CAATATG-----------TCGACAAAAGAAAAAATCGCT--A------TTATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCCC-------------------------------------------------T-TCT----------------CGCAAAA----A--ATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCC........................................................................................	21	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCCC-------------------------------------------------T-TCT----------------CGCAAA...........	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAGAA...........................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACC--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCCC-------------------------------------------------T-TCT----------------.................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------CGGCAAGTAGAAGCCC-------------------------------------------------T-TCT----------------CGC..............	24	1	1.00	1	1	0	0	0	0	0
.............................................................AACAGCAGAAATTATA---------T---------------------------------------------TCATCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	17	0.29	5	0	5	0	0	0	0
............................................................CAACAGCAGAAATTATA---------T---------------------------------------------TCATCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.24	4	0	4	0	0	0	0
..............................................................ACAGCAGAAATTATA---------T---------------------------------------------TCATCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.22	4	0	4	0	0	0	0
..........................................................ACCAACAGCAGAAATTATA---------T---------------------------------------------TCATCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	16	0.13	2	0	2	0	0	0	0
......................................................................AATTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
.........................................................................TATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------.......................................................................................................	24	20	0.10	2	0	2	0	0	0	0
................AA----------------------------------------ACCAACAGCAGAAATTATA---------A---------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCT--A------TTATAGAAGACCAGGTGCG..............................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	1	0	0	0	0	0
................................................................AGCAGAAATTATA---------T---------------------------------------------TCATCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCT--A------TTATAGAAGACCAGGTGCGG.............................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	0	1	0	0	0
...................................................................AGAAATTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CG.....................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CG.....................................................................................................	27	20	0.05	1	0	1	0	0	0	0
........................................................................TTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A------TTATAGAAGACCAGGTGCGT.............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAG.............................................................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATATG-----------TCGACAAAAGAAAAAATCGCT--A------T................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGG....................................................................................................	29	20	0.05	1	0	1	0	0	0	0
...........................................................................TA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A------TTATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------.......................................................................................................	28	20	0.05	1	0	1	0	0	0	0
........................................................................TTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------------------------------------------------------------------------CGGCAAGTAGA............................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A------TTATAGAAGACCAGGTGCGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCT--A------TTATAGAAGACCAG...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
......................................................................................T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTCTTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
........................................................................TTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--A------TTATAGAAGACCAGGTGCGT.............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
......................................................................AATTATA---------T---------------------------------------------TCATCGGCAAG----------------------------------------------------------------------------------TTTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................TCGGCAAG----------------------------------------------------------------------------------TTTGGTCTTTTAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

ACAGG--AGAAGCAGAAG---------------------------------------CAGCAGCAGCAGCAGCATCA---------G-------CA---------------------------------------ACGGTAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------GCAACCAACA-------------------------------ACCAAACAACA-G-------------------------------------------------------G------CAACAAC-----------CAGGCAAC---------------AT------------------------------CAACAAA----ACAGCTACAAT------AAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------A---TTTAAAAGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAGT--AACATTAAACA---------------------------------------CAGCAGCAACAGCAGCAGCA---------G-------CA---------------------------------------ACACC----------------------------------------------------------------------------------------------------------------CA-AACTCC-A----------------------------------------------------------------------------------------AGCAAACACAAATTTCC--AGC-CACTCT---TTAGGTAGA-A------------------------ATTATTTA------A-----------------------ACATTT-TTAAACAAAACT----TCCTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATAAAAAATTAAAAA--------------------------------------------------------TAAAAGTAA--AG--------------------------------TGC--GTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCAAC--ATCAA-----------ACGGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TTACCGAA-AACTTGAA-CAAAAA--A-AAACAAT-CTCTTCA------ATAAACC-----------CAAACTAA---------------AC------------------------------AAAAAAT----AAAACCCATTA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTAAAA---------------TACACGAAAAAAATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAAC--AACACTAGCAA---------------------------------------CAACATTAGCAGCAACAACA---------C-------CA---------------------------------------ACAACAACACCAACAA------C-------------------AAC--------------------------------------------------------------------------------------------ACTA-----------------------------------------------------------------------------------------GCA--ACAGCAGCAGC--------------------AACAACA------AGAAGCC-----------TTGGCTAA---------------GC------------------------------AAACAAA----AAA--------------------------------------------------------------------------------AATGTAT-------ATGT------------AAAAAACCGAAAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--AAGGC-TTT----------------A------ACAAA--AAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAGC--AACAAGG------------ACCAA--------------------------CAGCAACAACAAAAACAACA---------A-------CA---------------------------------------GTGGCAGGAGCGGCAG------C-------------------GCA------------------------------------------------------------------------AA-CAGTAA---------------------------------------------------------------------------------------------------------------A-AACAAAAA-CAAATC-------------------------------------------A-------------AAGT---AA-------------------------------------------CAAACTGAG-------------------------------------------------------------------------------------------C------------AAAAAGTTGAGCTGGCAAAATTGCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCTTCAAGACAAGGAG--AAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAAC--ATCAA-----------ACGGCTCTCGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CAAA------AACCAAATCTCTTCA------ATAAACC-----------CAAACTAA---------------AC------------------------------AAAAAAT----AA-ACCCATTA-------AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--------------GTACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGTC--AAAACATCAGG---------------------------------------ATGGAGT----------------------CAAGCGAGGACACCGTAAAAAAGT-----------------------------CTTTG------GAAATTAAAATTAATTAAATTATAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA------------------------------------------------GCCAAAAG----ATTCTGC-GAAAAACAATTAAA-GGTATTTCCATGTTAAATATACACTACACCCAGAA---------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGACCTAAAATG-------TCAAA--AAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAGGTCAACACTCATTA---AAA---------------------------------AAAAAATTAAAAAATCAAAA---------G-------CA---------------------------------------AAATA-----------------------------------------------------------------------------------------------------------------AA-AATGCACAGAGAGAAAATAT-----------------------------------------------------------------------------------------ATT--ACT-TACTTACA-CCAC-------------------AAACATAAAGG-CCTTATCAGCAAA---AGCCTT-------AAA---AA-------------------------------------------CATG----ACT-------CAAAATTAAATAAATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAAAAAGTTAAAAAGAAAG---------------------------------------------------------AAA--ACAAC-T-------------------------TTTAA--AAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACATC--AAAC--------------GGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CCAATCAAA-AACCAAA-CTCTTCA------ATAAACC-----------CAAGCTAA---------------AC------------------------------CAAAATT----AAAGCCCATTT------AAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA---------------TACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................T---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................T---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........C--------------GGCTCACGGT---------------------------------------------ACCA---------GGTCAGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................T---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................T---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACTAGCCACAG----CAA------------CAG------------------------CAACAACAACAGAAA---CAGCAACAAAAC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------TCAACAAACCGTTTTATTACCATTTTATTTCCATGCGTTTTCCCCAAAAAAAA------------------------GCC------------------------------------------------------AAAACCAA---------------AA------------------------------AAAGGAA------------------------------------------------------------------------------------ATGAGAACCA-------ACCC------------GAAACTCCGAAAACGTGAGATTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCACTCCGAAAATGAAT--CTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------AA------------------------------AAAGGAA------------------------------------------------------------------------------------ATGAGAACC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

ACAAC--AACAAAAGAAA---------------------------------------CATCAACGACAACGGCAAT------ATAAC-------AA---------------------------------------AA---------GA---------A-------------------AACAAATTAAAAAGAAA-----------TA----------------------C---------TAAAATATGCACTTA-AACTTA-A----------------------------------------------------------------------------------------TGAAGAAATAAAGTGTT--CGG-AGTGCT---AAAAAATGT-T------------------------AGTGTTTG------A-----------------------AAAGTG-AAAAGCGAAACA----ATTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCAAACA--------------------------------------------------------------------------------------------TGAAGAGTTACAGTAC-------------------------------------------------T-TTT----------------T------AATCG--CAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AGGCA--GGGAGAATCCA---------------------------------------AAGAG-GGCAAGAAA-------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------GT-GGTGCACG-ATTAAAAAATA-----------------------------------------------------------------------------------------TAA--AAA-CATATAAGATAAGTT--AATACCTTT-CGCTTAA------GCTTAGA-----------CAGTACTT---------------GC------------------------------CAAAACT----TGAATACTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATAATAAATATTTTTGAAATGGCAGGTTGGCAGTTTGCAATAAGCGGAAC-------------------CACTGTGCAATGTCCT-------------------------------------------------TGCAAGGCTG--CGG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ACATC--AAAC--------------GGCTCACGGT---------------------------------------------ACCA---------GGTCAGGATAGAAAATT------------------------------------------------------------------------------------------------------------------------------------------------G-GCTGAAAG-TGAGTAAAGTT-----------------------------------------------------------------------------------------TCACCGAA-AACTTGAA-CAAATC--AAAACCAAA-CTCTTCA------ATAAACC-----------CAAGCTAA---------------AC------------------------------CAAAATT----AAAACCCATTT-------AAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA---------------TACACGGAA--AATGCT-GTAAAATGACATCTGATGCGCGAAATGTTT--GTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_13979

scaffold_12970:11067330-11067480 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads