ID:

dvi_13960

 Coordinate:

scaffold_12970:10961387-10961537 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intron [Dvir\up-in]; CDS [Dvir\up-cds]; exon [dvir_GLEANR_3467:2]; intron [Dvir\up-in]

No Repeatable elements found

Sense Strand Reads

--------##########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCAGCAGTTCCGAAGAGGAGGAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTAGTTTTTGTGGCCAAACTGAGCAGCTAAAACTCGATTGGTGTTCTTTTCTATTTTACTTTTTCTTAACAATTATGATTTGATTTTAATTTCATACCTAAAAATATTTCTATATGTGTGTATTTTACATATTTGAATTTGTGTTTGTATACGTCCTTGTATTTGTGTTTGTTATGCAATGAAAACAAACAAAAAAT
**************************************************..((((((........(((((..((((.........)))).)))))........)))))).................(((((.............))))).....(((((((((.(((((((.......)))))))..)))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060664
9_males_carcasses_total
 M061
embryo
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060665
9_females_carcasses_total
 V116
male body		 V053
head
 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106728
larvae
 SRR1106730
embryo_16-30h
 V047
embryo
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060671
9x160_males_carcasses_total
..........................TGTCGAGGAGACCAGAGAGGA............................................................................................................................................................................................................ 21 0 1 3.00 3 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0
......AGTTCCGAAGAGGAGGAGGTT................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AGGAGGTTGTCGAGGAGACCAGAGA............................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCCGAAGAGGAGGAGGT................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GAGGAGGAGGTTGTCGAG.......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCCGAAGAGGAGGAGGTTGTC............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGAGGAGACCAGAGAGGAGACGAA...................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............AAGAGGAGGAGGTTGTCGAGGA........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCCGAAGAGGAGGAGGTTGT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TCCGAAGAGGAGGAGGTTGT.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GACCAGAGAGGAGACGAA...................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......ACTTCCGAAGAGGAGGAGGT................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................GGTTGTCGAGGAGACCAGAGAGGAGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......GTTCCGAAGAGGAGGGGGT................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAGGAGGTTGTCGAGGAG....................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........CCGAAGAGGAGGAGGTTGTCGAGGA........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................AGGAGGTTGTCGAGGA........................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................GAGACCAGAGAGGAGACGAAAA.................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGAGGAGGAGGTTGTCGAGGAG....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CCGAAGAGGAGGAGGTTGTCGAGGAGACCAGAGAGGAGA.......................................................................................................................................................................................................... 39 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................GTTGTCGAGGAGACCAGAGA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................CGAGGAGACCAGAGAGGAGACGA....................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTCGAGGAGACCAGAGAGGAGACGAA...................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................GAGGAGGTTGTCGAGGAGAC..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................TTGTCGAGGAGACCAGAGAGGA............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ACCAGAGAGGAGACGAAAA.................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................GTTGTAGTGGAGACCAGA................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................GTGGCCAAACTGAGCAGCC......................................................................................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TACACCAGTTCCGAAGAGGA....................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................GTTCTCTTCTATTCTACTTT....................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............AGAGGAGCAGGGTGTCGGGG......................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................CGAGGAGGCCAGTGAGGA............................................................................................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................AGGATGTAGAGGAGAACAGA................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........TCTGAAGAGGATGAGGATGTC............................................................................................................................................................................................................................. 21 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
TACACCAGTTCCGAAGAGG........................................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................GGTGACGTAATTAGTTTTG............................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGTCGTCAAGGCTTCTCCTCCTCCAACAGCTCCTCTGGTCTCTCCTCTGCATTCATCAAAAACACCGGTTTGACTCGTCGATTTTGAGCTAACCACAAGAAAAGATAAAATGAAAAAGAATTGTTAATACTAAACTAAAATTAAAGTATGGATTTTTATAAAGATATACACACATAAAATGTATAAACTTAAACACAAACATATGCAGGAACATAAACACAAACAATACGTTACTTTTGTTTGTTTTTTA
**************************************************..((((((........(((((..((((.........)))).)))))........)))))).................(((((.............))))).....(((((((((.(((((((.......)))))))..)))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
 M047
female body
 M028
head
 SRR060669
160x9_females_carcasses_total
.................................CTCTGGTCTCTCCTCTGCGTTC.................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................GACGCGTCCATTTTGGGCTAA.............................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
..................................................................................................................................................................................................CACGAACATATGCCGGGACA..................................... 20 3 6 0.17 1 0 0 1 0 0 0
....................................................................................................AAAAGATAAAGTGAAAGAGAATA................................................................................................................................ 23 3 10 0.10 1 0 0 0 1 0 0
................................CCTCTGTTCTCACCTCTG......................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0
........................................................TCCAAAACAGGGGTTTGAC................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................................................GCAGGAACATCATCACACA........................... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:10961337-10961587 - dvi_13960 GCCAGCAGTTCCGAAGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTAG-TTTTTGTGGCCAA-ACT----------------------------GAGCAGCT-----AAAAC---TCGATTGGTGTTCTTT-TCTATTT-----------------------TACTTTTTCTTAAC--------------------------------AA--------------------------------------------------------TTATGATTTGATTTTAATTTCATACCTAAA------------------------------------------------------------------------------------AATAT-TTCTATATGTGT-GTATTTTACA----TATTTGAATTTGTGTTTGTA-------TACGTCCTTGTATTTGTGTTTGTTATGCAATGAAA-----ACA---------------------------------------------------------------AAC-A-A------AAAAT
droMoj3 scaffold_6473:10389627-10389919 + GCCAGCAGTTCCGAAGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTAG-TTTTTGTGGCCAAAAC---------------------------T-GAGCAGCT----AACAAC---TCGATTGGTGTTTTCTCTCTGTTT-------------TGTTTTTTTTTTTTTT-TTTTATC----------------------------AAA-----------------------------------------------------------TTATATTTTGATTTTATTTTCATAA--AACAAAAAGAAAAAAAAA----AAAAAAAAAC-AAAACA-AAA--C---------------------------------------CAAAATT-TTCTATATGTGTTTTG-----------------------TATTTGTATATGTCCTTTGTATTTGTATTTGTCTTTGTTATGCGA----AA-AA-A-AA---A-------------------------------------------------AAAAA-----ACCA-A------AAAAC
droGri2 scaffold_15203:2954139-2954365 - GTCAGCAGTTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTA--TTTTTGTGGCCAA-ACT----------------------------TAGCAGCTA--AATG------TCGATTGGTGTTTT-------------------------------------------TAAC--------------------------------AA--------------------------------------------------------TTATGATTTGATTATGATTTCATACAAAAA----------------AA----AAT-----------------------------------------------------------GAATG-CTCTATATGTGT-GTATTTTATATTTGTATTTGTATTTGTATTTGTA-------TAAGTCCTCGTTTTT-TATCTGTTATGCAA----A------------------------------------------------------------------------------------AAAAA
droWil2 scf2_1100000004515:2636588-2636741 - TTTTGT-----------------------------------------------------------------------------------------------------------------------------------TCTAT-CATATTTCCTTA-----C-----------------------ATTGCATCATGATTTATTTTA--------TATATATATAAC-----------------TATGTATA-TATATG----------------------------------------------------------------------------------------------------------------------TATA--TATG----TATGTAT-ATATATATGTGT------------------------GTGTGTTTGTA-------TATACTATTATACGTATATATGT----------------------------------------------------------ATACAT-------------------A-TATATAT-ATATAGAT
dp5 XL_group1e:6574411-6574583 + TT--------------------------------------------------------TTTTTTTGTTTTTTT-TTTTTTATAAAATGTTTTCTTTATTTCCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCTCATA---------ATCATC----ATCCA-------------TCA--T---------------------------------------TCTCCTC-TTCTATATGCAT-TTCTTTTGTGTATATATATATATTTGTATTTA------TTATTTTTCCTTTTTTTTTTTTTTTTT-TGAAA--AAA-----AC----------------------------------------------------------G-----TGC-A-A------ACAAT
droPer2 scaffold_17:427148-427288 + CAAAGCAGCTCCGAGGAGGAGGGAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTT------------TTTGTTGGTTTTGGTGCAGCAGCCT--CAAGAAC---TCGATTGCTGTTCATT-TATAATA-----------------------TACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTACT--------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13248:2476025-2476374 - CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGTGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATTTTTTGTTGGTTTTGGTGCAGCAGCCTCTTAAAAACTATTCGATTGGTGTTCACT-TATGTCTCGATA-----TT-----------------------ATGTCTCATTTTTTTTTTTCGCTGCA--CATAACTATAAATATT-TTTGTCGTTGTCCTATTTTT-TGATTTTC-TCAAAAA---------------------------------------------------ACTCA---AACC---------------------CTATTTTTTATGTTTTGTATTTTGTCCA--TTTG---TCAAAATTCTTCTATATGTGTTGTATT------------------------------------TTTTCTATTTTCGTTGTCAATGTT-TGCAA----ATCAACA-A------------------------------------------------------ATCGA-----AC-A-A------AAAAA
droBip1 scf7180000396575:425249-425571 + CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGTGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATTTTTTGTTGGTTTTGGTGCAGCAGCCT--TTAAAACTATTCGATTGGTGTTCACT-TATGTCGATATT------------------------------ATGT---------------CGCTGCACACATAACTATAACTATTTTTTGTCGTTGTCCAATTTTT-TGATTTTT----AAACCA-----------------------------------AAA----------------AAA-ACC---------------------CTATTTTTTAT-TTTTGTATTTTGTCCAT-TTTG---TCAAAATT-TTCTATATGTGTTGTATT----------------------------------------------TCGTTGTCAATGTT-TGCAA----ATCAACA-A------------------------------------------------------ATCGA----A-AAA-A------AAACC
droKik1 scf7180000302344:1512655-1512959 + CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCAACATTTTTCGTTGGTTTTGGTGCAGCAGCAT--AAAGAAC---TCGATTGGTGTTCACC-TATGTCTATATA-----TTTTG-----------------------T--CATT-------TTTCC------C--CCCTATAAA-----------------TATT-TTT-TTATTTTT--TGACACC------------------------------------------------------------CCT--CTC-A---------CCTCCTAT---TTATGTTTTGTATTTTGT--------CTATTCAAAATT-TTCTATATGTGTTGTATG-------------------------------------------------TCGTCAATGTTTTGCAA----ATCAACC-AAACTA--------------------------------------------------TCGAAACAAAA-A-A------AGAAG
droFic1 scf7180000453549:143634-143964 - GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATATACC-TTTTT-------------------------------------TTT--------CATAACTATAAC-----------------CACTTTTT-TGATTTTT-CCGAAACCGATATCCCACCCCATT----------------------------------------------TTG----------------------------------------------T-TTTTTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCTA----AA-AG-T-AA---A-CACT-TTTA-TAAATTTTGTAGTAATATGTATACCCCC--CCCCCCCCCCCAA----A-AAA-A------AAAAG
droEle1 scf7180000491006:28364-28689 + GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATA-----TTTTT----TTTT-----------TA------------------TGT------CATAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG-----------------------------------A---------------------AACCTTGCCCCGCCCCCA---CA----A-------------------------TCTTTTTTTTCAAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCGA----AA-AA-A-AA---A-CA-TTTTTA-TAAATTTTGTAGAAATATGTATTCCCCA-------------------A-AAA-A------AAAAG
droRho1 scf7180000780219:68406-68444 + ----------CCGATGAGGAG-GAGATCATCGAGGAGTACGAGGAAGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:566481-566782 - GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACACTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCAATTGGTGTTCACT-TATGTCTATATA-----TTTTT-------------------------------------TTT--------CAT-ACTATAAC-----------------CAGTATTT-TGATTTTT-TCCACGCCG---------------------------------------------------------AACCTTGCCCCT---------CC----C-------------------------T-TTATTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCGG----AA-----------A-CCCTTTTTT-TTAATTTTGTAGAACTATATACCACCCA-------------------------A------AAAAA
droTak1 scf7180000415812:29447-29783 + GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATAA-T--TTTTG-------------------------------------TTCGT------CATAACTATAAC-----------------CAGTTTTT-TGATTTTT-TCCACACCA-----------------------------------AAC----------------CA----CTTGACCCGCCCCA----CCTCCAA-------------------------T-TTTTTATTCCAAATT-TTTTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCAA----AA-AACAAAA-CCA-CC-TTTTTA-TAAATTTTGTAGAAATATGTATTTCCCTAA--------CCCGA----A-AAA-A------GAAAA
droEug1 scf7180000408958:98965-99304 + GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATCTATTTTTTTT----TTTT-----------TA------------------TGT------CATAACTATAAC-----------------CAATTTTTGTGATTTTTATCGAAA----------------------------------ACCGAAA---------ACCGAA----AACCTTGCCC-ACCCCA-AA-CCCCCAA-----TA------------------TGTTTTTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAA----------------------AAACAAACCCTTTTTTATAAATTTTGTAGAA----GTACTCCCCA----------TAAAA-----ACAA-A------AAAAT
dm3 chrX:13493165-13493498 - GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT----TTTTTTTGTT-----------------------TTTGC------CCTAACTATAAC-----------------AAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAATATAA-----AAAA-CCA-CCCTTTTTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------A-AAA-AGATTTGAAAAA
droSim2 x:12830214-12830520 - dsi_10120 GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT-------------------------------------TTTGC------CCTAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAATGAAA-----AAAA-ACA-CCCTT-TTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------------------------
droSec2 scaffold_20:125242-125548 - GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT-------------------------------------TTTGC------CCTAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGACAATGTT-TGCAATGAAA-----AAAA-AAA-CCCTT-TTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------------------------
droYak3 X:7776011-7776330 - GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATT-----TTTTT----TTTT-----------------------------TTTGC------CATAACTATAAC-----------------CAAGTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAA----AA-AA-A-AAACCATCCCTTTTTT-TGAAATTGGTAGAAATATGTATTCCCCA-------------------A-AA---------AAGAT
droEre2 scaffold_4690:13389103-13389421 + GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCTGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATTT------TTTTT-------------------------------------TTTGC------CATAACTATAAC-----------------CAATTTTT-TGATTTTT-TCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAA----AA-A--AAAT-CCA-CCCGG-TTT-TAAAATTGGTAGAAATATCTATGCCCAA-------------------A-AAAAAGA-TTAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCCAGCAGTTCCGAAGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTAG-TTTTTGTGGCCAA-ACT----------------------------GAGCAGCT-----AAAAC---TCGATTGGTGTTCTTT-TCTATTT-----------------------TACTTTTTCTTAAC--------------------------------AA--------------------------------------------------------TTATGATTTGATTTTAATTTCATACCTAAA------------------------------------------------------------------------------------AATAT-TTCTATATGTGT-GTATTTTACA----TATTTGAATTTGTGTTTGTA-------TACGTCCTTGTATTTGTGTTTGTTATGCAATGAAA-----ACA---------------------------------------------------------------AAC-A-A------AAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................TGTCGAGGAGACCAGAGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000101000000000000000000010000000000000000000000000
......AGTTCCGAAGAGGAG-GAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000020000000000000000000000000
...................AG-GAGGTTGTCGAGGAGACCAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.......GTTCCGAAGAGGAG-GAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...............GAGGAG-GAGGTTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.......GTTCCGAAGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.............AAGAGGAG-GAGGTTGTCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.......GTTCCGAAGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.........TCCGAAGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
........................GGTTGTCGAGGAGACCAGAGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..................GAG-GAGGTTGTCGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..........CCGAAGAGGAG-GAGGTTGTCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000100
...................AG-GAGGTTGTCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000010000
..............AGAGGAG-GAGGTTGTCGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..........CCGAAGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000000000000000001000000
.........................GTTGTCGAGGAGACCAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..............................CGAGGAGACCAGAGAGGAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
..................GAG-GAGGTTGTCGAGGAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..........................TTGTCGAGGAGACCAGAGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.................................................................GTGGCCAA-ACT----------------------------GAGCAGCC-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
GCCAGCAGTTCCGAAGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTAG-TTTTTGTGGCCAAAAC---------------------------T-GAGCAGCT----AACAAC---TCGATTGGTGTTTTCTCTCTGTTT-------------TGTTTTTTTTTTTTTT-TTTTATC----------------------------AAA-----------------------------------------------------------TTATATTTTGATTTTATTTTCATAA--AACAAAAAGAAAAAAAAA----AAAAAAAAAC-AAAACA-AAA--C---------------------------------------CAAAATT-TTCTATATGTGTTTTG-----------------------TATTTGTATATGTCCTTTGTATTTGTATTTGTCTTTGTTATGCGA----AA-AA-A-AA---A-------------------------------------------------AAAAA-----ACCA-A------AAAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................GTTGTCGAGGAGACCAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................AGACCAGAGAGGAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......AGTTCCGAAGAGGAG-GAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................GGTTGTCGAGGAGACCAGAGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......GTTCCGAAGAGGAG-GAGGTTGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......AGTTCCGAAGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAAAAA----AAAAAA...................................................................................................................................................................................................................................................21200.051100000
droGri2
GTCAGCAGTTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTA--TTTTTGTGGCCAA-ACT----------------------------TAGCAGCTA--AATG------TCGATTGGTGTTTT-------------------------------------------TAAC--------------------------------AA--------------------------------------------------------TTATGATTTGATTATGATTTCATACAAAAA----------------AA----AAT-----------------------------------------------------------GAATG-CTCTATATGTGT-GTATTTTATATTTGTATTTGTATTTGTATTTGTA-------TAAGTCCTCGTTTTT-TATCTGTTATGCAA----A------------------------------------------------------------------------------------AAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTTGT-----------------------------------------------------------------------------------------------------------------------------------TCTAT-CATATTTCCTTA-----C-----------------------ATTGCATCATGATTTATTTTA--------TATATATATAAC-----------------TATGTATA-TATATG----------------------------------------------------------------------------------------------------------------------TATA--TATG----TATGTAT-ATATATATGTGT------------------------GTGTGTTTGTA-------TATACTATTATACGTATATATGT----------------------------------------------------------ATACAT-------------------A-TATATAT-ATATAGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TT--------------------------------------------------------TTTTTTTGTTTTTTT-TTTTTTATAAAATGTTTTCTTTATTTCCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCTCATA---------ATCATC----ATCCA-------------TCA--T---------------------------------------TCTCCTC-TTCTATATGCAT-TTCTTTTGTGTATATATATATATTTGTATTTA------TTATTTTTCCTTTTTTTTTTTTTTTTT-TGAAA--AAA-----AC----------------------------------------------------------G-----TGC-A-A------ACAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTTT-T..................................................................................................19200.2040300000100
...................................................................TTTTTT-TTTTTTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.0510000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTTTTTTTTTTTTT.....................................................................................................18200.0510000100000
droPer2
CAAAGCAGCTCCGAGGAGGAGGGAGGTTGTCGAGGAGACCAGAGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTT------------TTTGTTGGTTTTGGTGCAGCAGCCT--CAAGAAC---TCGATTGCTGTTCATT-TATAATA-----------------------TACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTACT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................GGAGGTTGTCGAGGAGACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.....................GGAGGTTGTCGAGGAGACCAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.....................GGAGGTTGTCGAGGAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droAna3
CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGTGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATTTTTTGTTGGTTTTGGTGCAGCAGCCTCTTAAAAACTATTCGATTGGTGTTCACT-TATGTCTCGATA-----TT-----------------------ATGTCTCATTTTTTTTTTTCGCTGCA--CATAACTATAAATATT-TTTGTCGTTGTCCTATTTTT-TGATTTTC-TCAAAAA---------------------------------------------------ACTCA---AACC---------------------CTATTTTTTATGTTTTGTATTTTGTCCA--TTTG---TCAAAATTCTTCTATATGTGTTGTATT------------------------------------TTTTCTATTTTCGTTGTCAATGTT-TGCAA----ATCAACA-A------------------------------------------------------ATCGA-----AC-A-A------AAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................GGAGACCCGTGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000
..............................CGAGGAGACCCGTGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000
...............GAGGAG-GAGGTTGTCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............GAGGAG-GAGGTTGTCGAGGAGACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................TGTCGAGGAGACCCGTGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
............GAGGAGGAG-GAGGTTGTCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........CTCCGAGGAGGAG-GAGGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................GGTTGTCGAGGAGACCCGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......GCTCCGAGGAGGAG-GAGGTTGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................GAGGAGACCCGTGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........................GGTTGTCGAGGAGACCCGTGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......AGCTCCGAGGAGGAG-GAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......GCTCCGAGGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................AGGTTGTCGAGGAGACCCGTGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............................CGAGGAGACCCGTGAGGAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................GGTTGTCGAGGAGACCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGTGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATTTTTTGTTGGTTTTGGTGCAGCAGCCT--TTAAAACTATTCGATTGGTGTTCACT-TATGTCGATATT------------------------------ATGT---------------CGCTGCACACATAACTATAACTATTTTTTGTCGTTGTCCAATTTTT-TGATTTTT----AAACCA-----------------------------------AAA----------------AAA-ACC---------------------CTATTTTTTAT-TTTTGTATTTTGTCCAT-TTTG---TCAAAATT-TTCTATATGTGTTGTATT----------------------------------------------TCGTTGTCAATGTT-TGCAA----ATCAACA-A------------------------------------------------------ATCGA----A-AAA-A------AAACCSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCAACATTTTTCGTTGGTTTTGGTGCAGCAGCAT--AAAGAAC---TCGATTGGTGTTCACC-TATGTCTATATA-----TTTTG-----------------------T--CATT-------TTTCC------C--CCCTATAAA-----------------TATT-TTT-TTATTTTT--TGACACC------------------------------------------------------------CCT--CTC-A---------CCTCCTAT---TTATGTTTTGTATTTTGT--------CTATTCAAAATT-TTCTATATGTGTTGTATG-------------------------------------------------TCGTCAATGTTTTGCAA----ATCAACC-AAACTA--------------------------------------------------TCGAAACAAAA-A-A------AGAAGSizeHit CountTotal NormTotal
No Reads
droFic1
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATATACC-TTTTT-------------------------------------TTT--------CATAACTATAAC-----------------CACTTTTT-TGATTTTT-CCGAAACCGATATCCCACCCCATT----------------------------------------------TTG----------------------------------------------T-TTTTTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCTA----AA-AG-T-AA---A-CACT-TTTA-TAAATTTTGTAGTAATATGTATACCCCC--CCCCCCCCCCCAA----A-AAA-A------AAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATA-----TTTTT----TTTT-----------TA------------------TGT------CATAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG-----------------------------------A---------------------AACCTTGCCCCGCCCCCA---CA----A-------------------------TCTTTTTTTTCAAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCGA----AA-AA-A-AA---A-CA-TTTTTA-TAAATTTTGTAGAAATATGTATTCCCCA-------------------A-AAA-A------AAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
----------CCGATGAGGAG-GAGATCATCGAGGAGTACGAGGAAGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACACTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCAATTGGTGTTCACT-TATGTCTATATA-----TTTTT-------------------------------------TTT--------CAT-ACTATAAC-----------------CAGTATTT-TGATTTTT-TCCACGCCG---------------------------------------------------------AACCTTGCCCCT---------CC----C-------------------------T-TTATTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCGG----AA-----------A-CCCTTTTTT-TTAATTTTGTAGAACTATATACCACCCA-------------------------A------AAAAASizeHit CountTotal NormTotal
No Reads
droTak1
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATAA-T--TTTTG-------------------------------------TTCGT------CATAACTATAAC-----------------CAGTTTTT-TGATTTTT-TCCACACCA-----------------------------------AAC----------------CA----CTTGACCCGCCCCA----CCTCCAA-------------------------T-TTTTTATTCCAAATT-TTTTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTT-TGCAA----AA-AACAAAA-CCA-CC-TTTTTA-TAAATTTTGTAGAAATATGTATTTCCCTAA--------CCCGA----A-AAA-A------GAAAASizeHit CountTotal NormTotal
No Reads
droEug1
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCAA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATCTATTTTTTTT----TTTT-----------TA------------------TGT------CATAACTATAAC-----------------CAATTTTTGTGATTTTTATCGAAA----------------------------------ACCGAAA---------ACCGAA----AACCTTGCCC-ACCCCA-AA-CCCCCAA-----TA------------------TGTTTTTTTTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAA----------------------AAACAAACCCTTTTTTATAAATTTTGTAGAA----GTACTCCCCA----------TAAAA-----ACAA-A------AAAATSizeHit CountTotal NormTotal
No Reads
dm3
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT----TTTTTTTGTT-----------------------TTTGC------CCTAACTATAAC-----------------AAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAATATAA-----AAAA-CCA-CCCTTTTTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------A-AAA-AGATTTGAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGGTAGAAATATG..............................................19110.001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCTCCGAGGAGGAG-GAGGTTGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
.......GCTCCGAGGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
.........................GTTGTCGAGGAAACCCGCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGGAG-GAGGTTGTCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........CTCCGAGGAGGAG-GAGGTTGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCCGAGGAGGAG-GAGGTTGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................GTCGAGGAAACCCGCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCTCCGAGGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...............................GAGGAAACCCGCGAGGAGACGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGAGGAAACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GAGGTTGTCGAGGAAACCCGCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GTTGTCGAGGAAACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......AGCTCCGAGGAGGAG-GAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TATCTT-----TTTTT----TTTTTTTGTT-----------------------.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....CAGCTCCGAGGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGTATTCCCCA-------------------A-AAA-AG..........2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GAGGAGGAG-GAGGTTGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................GTTGTCGAGGAAACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CT--AAAGAAC---TCGATTGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGCTCCGAGGAGGAG-GAGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CCGAGGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGTCGAGGAAACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------.........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGCTCCGAGGAGGAG-GAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................GAG-GAGGTTGTCGAGGAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGAAACCCGCGAGGAGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................GAGGAAACCCGCGAGGAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGAGGAAACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGTCGAGGAAACCCGCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGAGGAAACCCGCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AG-GAGGTTGTCGAGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTATATGTGTTGTATT-------------------------------------------------TTGT...........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATCTTTTGTTGGTTTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................G-GAGGTTGTCGAGGAAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGTCGAGGAAACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGAGGAAACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........CTCCGAGGAGGAG-GAGGTTGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......GCTCCGAGGAGGAG-GAGGTTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................GTTGTCGAGGAAACCCGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................AG-GAGGTTGTCGAGGAAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GA-TTTTTGTCGACATCTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ACATTTTTGTTGCCGA-TTTTTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGGTTGTCGAGGAAACCCGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............GAGGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AG-GAGGTTGTCGAGGAAACCCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGAGGAAACCCGCGAGGAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGAG-GAGGTTGTCGAGGAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCTCCGAGGAGGAG-GAGGTTGTCGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................CGAGGAAACCCGCGAGGAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............GAGGAGGAG-GAGGTTGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........CTCCGAGGAGGAG-GAGGTTGTCGATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................GAG-GAGGTTGTCGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGAAACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGCTCCGAGGAGGAG-GAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAAACCCGCGAGGAGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT-------------------------------------TTTGC------CCTAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAATGAAA-----AAAA-ACA-CCCTT-TTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................GCCT--AAAGAAC---TCGATTGGTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
.........................................................ACATTTTTGTTGCCGA-TTTTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
............................GTCGAGGAAACCCGCGAGGAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.....CAGCTCCGAGGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.AAAGCAGCTCCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
droSec2
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAAACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATCTT-----TTTTT-------------------------------------TTTGC------CCTAACTATAAC-----------------CAATTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGACAATGTT-TGCAATGAAA-----AAAA-AAA-CCCTT-TTT-TAAAATTGGTAGAAATATGTATTCCCCA-------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................GTTGTCGAGGAAACCCGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
......AGCTCCGAGGAGGAG-GAGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCAACATCTTTTGTTGGTTTTGGTGCAGCAGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATATT-----TTTTT----TTTT-----------------------------TTTGC------CATAACTATAAC-----------------CAAGTTTT-TGATTTTTTTCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAA----AA-AA-A-AAACCATCCCTTTTTT-TGAAATTGGTAGAAATATGTATTCCCCA-------------------A-AA---------AAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................GAG-GAGGTTGTCGAGGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.................................GGAGACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..............................CGAGGAGACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
droEre2
GAAAGCAGCTCCGAGGAGGAG-GAGGTTGTCGAGGAGACCCGCGAGGAGACGTAAGTACATTTTTGTTGCCGA-TTTTTGTCGACATCTTTTGTTGGTTTTGGTGCAGCTGCCT--AAAGAAC---TCGATTGGTGTTCACT-TATGTCTATTT------TTTTT-------------------------------------TTTGC------CATAACTATAAC-----------------CAATTTTT-TGATTTTT-TCGAAACCG---------------------------------------------------------AACCTTGCCC-A---------CC----A-------------------------T-TTTGTATTCCAAATT-TTCTATATGTGTTGTATT-------------------------------------------------TTGTCAATGTC-TGCAA----AA-A--AAAT-CCA-CCCGG-TTT-TAAAATTGGTAGAAATATCTATGCCCAA-------------------A-AAAAAGA-TTAAAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................GGTTGTCGAGGAGACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.......................AGGTTGTCGAGGAGACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
................................AGGAGACCCGCGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................GGAGACCCGCGAGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
........................................................................................................................................................................................................................................................TT-TGATTTTT-TCGAAACCG---------------------------------------------------------AACCTTGC.................................................................................................................................................................................................................................................2711.0010100000
..................GAG-GAGGTTGTCGAGGAGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...........................TGTCGAGGAGACCCGCGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.......GCTCCGAGGAGGAG-GAGGTTGTCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000

Generated: 05/17/2015 at 03:45 AM