ID:

dvi_13883

 Coordinate:

scaffold_12970:10192867-10193017 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.5 -37.4 -37.3

Flybase annnotation

CDS [Dvir\GJ19489-cds]; exon [dvir_GLEANR_4382:1]; intron [Dvir\GJ19489-in]

Repeatable elements

NameClassFamilyStrand
CT-richLow_complexityLow_complexity+
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATCAAGCGCATTATCAAGGAGGTTAAAGATCTAATGAGTGCCGCTAAAGGTGAGTACACACACAGAAACGCCAAAGTTAATGTTATTCTCTCATTTTCTTTATTGCTCCCTCTCTCTATCTCTCTCTCTGTTAGTCAGGCGAACGTGCGCTCTCGTGCGTGAGACCGCGCTGCTCACCCTGTGTGTGTGTGTGTGTGTGTGCTTGTGTGTGTCGACGCCTGTCAAGGTCAACCAGTAGCGCAAATAAAAC
**************************************************.....((((((((((...((((.((((..((((.........))))..))))..................................((((.((..(((((.((((......)))).)))))...))..)))).))))...)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060667
160_females_carcasses_total
 M047
female body
 M061
embryo
 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060670
9_testes_total
 SRR060683
160_testes_total
........................................................................................................................................................CTTGTGCGTGAGACCGCGCTCT............................................................................. 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGCTTT............................................................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGTGACCGCGCTCC............................................................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTGTGCGTGAGACCGCGCTC.............................................................................. 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATCTAATGAGTGCCGCTAAAGT........................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGTTAAAGATCTAATGAGTG.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGGT............................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGCATTATCAAGGAGGTTAAAG.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGTGACCGCGCTC.............................................................................. 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGATACCGCGCTCC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGCTTA............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTGAGACCGCGCTC.............................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTCAGACCGCGCTC.............................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGGTGCGTGAGACCGCGCTCC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTCAGACCGCGCTTC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTAGTGCGTGAGACAGCGCTG.............................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CAGGTGCGTGAGACCGCGCTTC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGTGCGCTCTCGTGCGTGAGA...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTGAGACCGCGCTCT............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTGGGACCGCGCT............................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGCTCC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGTGCGCTCTCCTGAGTG......................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................CTACTGAGTGCCGCTAAAGT........................................................................................................................................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........ATTATCAAGGAGGTTAAAG.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................CGCTCTCGTGCGTGAGACCGCGCT............................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTGAGACCGCGCCT.............................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GATCAAGCGCATTATCAAGGAGGTTA................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCGTGCGTGTGACCGCGGT............................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTAAAGATCTAATGAGTGC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCTCGCTCC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGCCTC............................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGCTC.............................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTAAAGATCTAATGAGTGCCG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................AAGGAGGTTAAAGATCTAATGAGT................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTAGTGCGTGAGACAGCGCTTCT............................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGTGCGTGTGACCGCGGTGC............................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGCTTC............................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGCGACCGCGCTTC............................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGCCT.............................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATCTAATTAGTGACGCTA............................................................................................................................................................................................................ 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGAGCGTGAGACCGCGCTC.............................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGGTGC............................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGTGCGTGAGACAGCGCTCC............................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCTTGAGACCGCGCTC.............................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGAGCGTGAGACCGCGGT............................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGTGACCGCGCTT.............................................................................. 21 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGGTGCGTGAGACAGCGCT............................................................................... 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACCGCGGTT.............................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCGTGCGTGTGACAGCGGTG.............................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGC................................................................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGTGCGTGAGACCGCGG................................................................................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTTCTAGTGAGTGCCGC.............................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CTGGTGCGTGAGACAGCGCTC.............................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGGTG.............................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGCGACCGCGGT............................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTGAGACAGCGCTT.............................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTCCGTGTGACCGCGCT............................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCGTGCGTGAGACAGCGCCT.............................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCGTGCGTGAGACAGCGTC............................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CATCTAATTAGTGCCGCTC............................................................................................................................................................................................................ 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1
........................................................................................................................................................CTGGTGCGTGAGACAGCGCC............................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGTGCGTGAGACAGCGTT............................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGTGCGTGTGACCGCGGT............................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGCGAGACCGCGG................................................................................ 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGGAGCGTGAGACAGCGCT............................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGCTCATTCTAAAGGAGGT................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTGTGTGTGTGTGTGCT............................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................AATGCCGCTAAAGATGAGGA.................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGTGTGTGTGCTTGTGTGTG....................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGCT............................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGTGCGTCTGACCGCGC................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTAGTTCGCGTAATAGTTCCTCCAATTTCTAGATTACTCACGGCGATTTCCACTCATGTGTGTGTCTTTGCGGTTTCAATTACAATAAGAGAGTAAAAGAAATAACGAGGGAGAGAGATAGAGAGAGAGACAATCAGTCCGCTTGCACGCGAGAGCACGCACTCTGGCGCGACGAGTGGGACACACACACACACACACACACGAACACACACAGCTGCGGACAGTTCCAGTTGGTCATCGCGTTTATTTTG
**************************************************.....((((((((((...((((.((((..((((.........))))..))))..................................((((.((..(((((.((((......)))).)))))...))..)))).))))...)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
.....................................................................................................................CTAGAGAGAGAGACAATCAGC................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................GCTAGAGAGAGAGACAATCAGCT................................................................................................................ 23 3 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGGGACACACACACACACACAC..................................................... 22 0 5 0.20 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CATTTGCGGACAGTTACAGTT................... 21 3 7 0.14 1 0 0 1 0 0 0 0 0
................................................................................................................................................GCGCGCTAGAGGACGCACT........................................................................................ 19 3 13 0.08 1 0 0 1 0 0 0 0 0
......................................................................................................................TGGAGAGAGAGACAATCATC................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................ACACACACGAACACACACAG..................................... 20 0 14 0.07 1 0 0 0 0 1 0 0 0
..........................................................................................GAGTTCAAGAAAGAACGAGG............................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................CTTTCATCGCGTTTATTTTG 20 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:10192817-10193067 + dvi_13883 GATCAAGCGCATTATCAAGGAGGTTAAAGATCTAATGAGTGCCGCTAAAGGTGAGTAC-ACACACAGA-------------AACGCC---AA---------AGTTAATGTTATTC------------------------TCTCAT-----------------------------------------------------------------------------------------------------------------------------------------TTTCTTTATT-----GCTCCCTCTCTCTATCTCT--------------------------CTCTC-------------------------------------------------T----GTTAGTCAGGCGAACGTGCGCTC--TCGTGCGTGAGACCGCG------------------------------------------------------------CTG--CTCAC------------------------------------------------------CCTGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG--------CTTGTGTG------------TGT----------CGACGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCGCAAATAAAAC
droMoj3 scaffold_6473:11260476-11260765 - GATCAAGCGCATTATCAAAGAGGTTAAAGATCTAATGAGTGCCGCAAAAGGTGAGTAC-ACACACGCATACTACGTATGGTAATGGT---AAACCTTTAAATGTTA------CAC------------------------TCGCCCTCT-------------------------------------------------------------------------------------------------------------------------------------C-------------------GCTCTTGC--------------TCGC----GCGCCTC-----------------------------------------TTCG-AG-------------CTGCTAGTGAAGCGAACGTGCGCTC--TCGTGCGTGAGAATGCGCTCGCTCGCTGTGTCG------------------CTCTGT-------GTTCGTG--T--------------------------------------A--------T----------------------GTGCTTGT-------------------------------------------------------------------------------------------ATGCGTGTG--------TGTGTGTA----------------------------TTTGTGTGTTTGTCGATGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCGCAAATAAAAG
droGri2 scaffold_14853:6601976-6602304 + GATCAAGCGCATTATCAAAGAGGTTAAAGATCTAATGAGTGCCGCAAAAGGTGAGTACGAAACACA---------------AAAGCA---AA---------TGTTAATTTTACTC------------------------ACTC--TC-----------------------------------------------------------------------------------------------------------------------------------------TCTCACTC-----GCCCCCTCTCTCTCTCTCTAACACAC--------------------TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTC---TGCTTCTCTGTTAGTCAAGCGGACGCACGCTCTTTCGTGCATGAGATCGTGCTCGTTCACCCTCT----------------CTCTCTCTCT-------CTCTTTA----------------------------------------TCACTCTATAT----------------------ATATATAT--ATG-----------------------------------------------------------------------------------------TGTG------------TGTGTG----------------------------TGTG----------TATGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCACAAATAAACC
droWil2 scf2_1100000004909:8379745-8379930 - ATA-AATCGCAGCACCGAGAAGAAACAACAATTAACGAA-----CCCAAATTGCATGCAACATACG---------------GCAAAAGACAT---------------AGTTTTTCTTATATATAGATATTT--------TTTTTTTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTTT------------------TTTGCGACTTTCTCTTCT------------------------------------------T-------T-----------------------------------------------------G-----------------TGTGT----------GTATGAG-------------TTG--GT----------------------------------------------------------GTGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG----------------------------TGTG--TGTGTG--------T---------------------------------------------------------------------------------
dp5 3:1618827-1618949 + ATAT-------------------------------------------------------------------------------------------------------TGTTTTTTCCTCATCATCATCCTCCTCTTCGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTCC---------------TCCT---------TTTCTTTTTT------------------------------------------T-------T-----------------------------------------------------G-----------------CATGT----------GCACT--CGCT---------C---------------------------------------------------------------CGTGTGT--GTGTGTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------CGTGTGTG------------TGCTTGTGCTTGTC----------------------------------------------------------------------------------------
droPer2 scaffold_80:30063-30252 + AGCAATACG---------------------------------------------------------G------------------------A---------AGTTAAGGTCGCTC------------------------GTTCAG---------------------------------------------------------------------TCGCTGCCA------------------------------------------------------------GTGCCGACTGTTGC---TCATCTCCCGACGATT--------------------------CTCTCTGTAGGTGTGTGTG-----------------------------------T----------------------------------------------------------GTGG------------------GCGTGT-------GTGTGTG--T--------------------------------------G--------TGCGATTGTTGGAGAGTGCACTAGTGT--GTGCGTG---------------------------------------------------------------------------------------TGTGTGTGTG------TGTGTGTG----------------------------TGTG----------TGTGTGTGGCAAATGCGGCCGGTA---------------------------------------------------G------------
droAna3 scaffold_12929:166672-166840 + TTTT-------------------------------------------------------------------------------------------------------CC-----T------------------------CACATCTCCC----------------------------------------------------------------------------T-------------------------------------------------------CACTTTTCC---------------------------------TCAC----------------------------------------------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTCATGTGCTCAA--GAGTTTTCTCGCCGTGTGTGTGCCA-GCAGCGGGT--------------GTGCGTGC---------GTGTGTGTG----------TGTGTG------------TGTGTGTGTGTGTGTGTGT----------TTATTTTT-----------------CGCCACATT-----G--------------C------------GGCCATCGAGTGTAAACAAAGC
droBip1 scf7180000395751:491959-492115 - TTTG-------------------------------------------------------------------------------------------------------TGTTCTTC------------------------TTGCCTG-----------------------------------------------------------------------------TCT-------------------------------------------------------------------------------------------------TTGC-------------------------------------ATTTCTCCCTGTTTGTTTTAGCCTT---TGTTTGTT---------------------------------------------TGTTAGCCCTGT---------------------------------TTGTTTG----------------------------------------TAGTTCTAGCC----------------------ATGTGTGT--ATG-----------------------------------------------------------------------------------------TACGAG----------CATGTG----------------------------TTTT--TGGGTGTCT--ACTTGG-----------------------------------------TAGA------------AACGAAAAAATAATAAAAAACG
droKik1 scf7180000302610:112174-112305 - AAGA-------------------------AGCTTTTGAGGGTCGCGGTGAG---GGAC-ACACACAGC-------------ATTAGA---------------------G---------------------------------------------------------------------------------------------ACGAAAAATTCTTCAATGCTC------------------------------------GC----AC---------------TCTCC--T--------CTCTCTCTCTCTCTCTCT--------------------------CTCTC-------------------------------------------------T----GTGCAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGAAAGAGCTCTCT-TGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454065:2366188-2366362 + CTCT-------------------------------------------------------------------------------------------------------CG-----C------------------------TCTCTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------TCTACCCCTCCCT--------------------------------------------------G-----------------------------------T----------------------------------------------------------TTTG------------------CCCTCT-------CTTTATGGCT----------------------------------------------------------------------------G----------------------------------------------TGCAA-ACGTTGATTCATTAAAATTCAATTTTCGC---------------TCTTGTCCGTGTGTGTGTGTGTGTGCGTGCTTCGTTT------------AAT----------TGAACCCTGTAA----------------CAGATT-----GCGTTACATCAACATATAGATTGAATAA--------------------AA
droEle1 scf7180000491011:2133788-2133920 - GTTG-------------------------------------------------------------------------------------------------------CT-----C------------------------TTTCCTTTCCTTTATTTTATTATTTTTTTTTTCTGCTGGCAGGATGAACTATCACAAAG----CC-ATAAAACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------CGCCTG----------------------------------------TGGC--------------------------TGCATGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------GTTATG--------GGTGTGTG------------GGTGTAC----------GTCTGT-------------------------------------------------------------------------------
droRho1 scf7180000777097:219374-219485 - TTTA-------------------------------------------------------------------------------------------------------TT-----T------------------------TTTCCTTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTCTC------------------TTTCTGTCTCGC------------------------------------------------------------------------------------------------------ACTTGTTTG-----------------CTTGTGTCCTTTTTT-------CTCCACG----------------------------------------TGAGTCTCGAC----------------------GCCT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG----------------------------TTTG--TGGGTA--------T---------------------------------------------------------------------------------
droBia1 scf7180000302075:3048060-3048239 + ACACACAC--A-------------------------------------------------------CT-------------AACACC---------------------G---------------------------------------------------------------------------------------------AC-----------------------------ACTAAC----ACTCACACACCTTTGTGGCAGACACGC--GTACTGTCTGTC---------------------TCCCTCCCCCTCGCACCC--ACAGTCTGGCCTCGC------------------------------------------------------------------------------------------ACTTTGCAATGCA--GCCATGCCATGT---------------------------------CTGTGTGACTGCCTCG--GTGTC----------------------------------------------------------GGT--GT-------------------------------------------------------------------------------------------GCGCAAGTGTGTGTGTGTGTGTGTGTCTGC------------------------------------G----------------------------------------------------------------------------------------
droTak1 scf7180000415878:574229-574389 + TTTC-------------------------------------------------------------------------------------------------------TT-----T---------------------TGCCTACTCTC------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------TTCT-----------------------ATCTCTCTCTC-----------------------------------T----------------------------------------------------------GTCG------------------CTCTCT-------CTTTCTG--T--------------------------------------A--------CTTAAC--------------TGTCTGT--GTGTGTG-------------------------------------------------------------------------------------------TATG----------CTTGTG----------------------------TCTG--TGTGTG--------TTGCACATATCCTT----TAAAAGTTTAAACGA-----------GAGCAGCCGCCAAAATAACGGTAAAGTGTAAAGGAGAG
droEug1 scf7180000409209:67422-67590 + ATGT----------------------------------------------------------------------------------------------------AAATTTCTCTC------------------------TTTC-----------------------------------------------------------------------------------------------------------------------------------------------TCTCTC-----GCTCGCTCTATCT------------------------------------------------------------------------------T---C-------------------------------------------------ATGCGCCTGCTGTCTCT------------------TTCTGTTTCTGAG-------------CTG--G------------------------------------------------------------------------------------------------------------------------------------CACAATTTCAGTGTTGT---------------TGCTGTCGCTTTGGTGACGTAT---------------------------TTTAT----------ATGTCTGCCAGAGGCTTCCGCATGGCC-----ACCCAA-----------AAGCCACCCCCAAACC--------------------AC
dm3 chr2L:12276813-12276951 + CATCAA-----------------------------------------------------------------------------------------------------TGTTGCTG------------------------TTGCTTT-----------------------------------------------------------------------------TTCTTCGA----------------------------------------------------TTTTCCTTGGC--------------------------------------------------------------------------------GTTTCCTTTATTTTTCCTTCGTT------------------------------------------------G----G---------CAAACTTGTTTTT------------TAT--CGCT---------TTG--TTCTA--TT--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------
droSim2 2l:10873618-10873815 - AGTCGAGCGGATGGGCGA-----TTAGAAATGTGGGAGTGGCTGGACAGGGTGGCGATGGGTCATT----------------------------------------------CGC------------------------AGGGATT----------------------------------------------------ACATTCCGTT---------------TTGTTCAAAAATTAATAGAATTTCATAAGCTTTTTCGGTTGCGTTGCTGTCTCTGTCTGTC---------------------TATCTCGCTCTCATTCCC--AT----------------------------------------------------------------------------------------CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTCTCTGTCGCTCGA--TGCACTGCTCTCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:7466889-7467020 - ACACACACA---------------------------------------------------------GA-------------GAAGCA---GA----------------A---------------------------------------------------------------------------------------------GC-ATAAATCTT--------------------------------TCGACACTTTTTCAT---------------------AGTCTACTTT-----GCTGCGTCTCTCTGTCTGT--------------------------CCATC-------------------------------------------------T----GTA---------------------------------------------------------------------------------------------------C---------------------------------------------------------------TGCATGT--GTATGTGTGTGCGTGTATGAGGGGA--GGGGGTATTCCCCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:16568887-16569030 - GTTC-------------------------------------------------------------------------------------------------------CT-----G------------------------TTTGTCTCTC----------------------------------------------------------------------------T-------------------------------------------------------TTCTGTTTTCTGCTGG---TCTTCTTTTG--------------------------------------------------------------------------GGCTG---TTTTCCTT---------------------------------------------GGTTCGCTTTGT---------------------------------TTACC--------GTTAG--CTCTCTGCAATTGCGGTACGTGCAGAT-G-CCCGACTT----------------------ATCT----GCGTG---------------------------------------------------------------------------------------------TG----TGTGTGTGTGTGTGTGT------------------------------------G----------------------------------------------------------------------------------------
droEre2 scaffold_4770:7639640-7639794 - AAGT----------------------------------------------------------------------------------------------------CACAGTCTCTC------------------------TCT-------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCTTTCGATAA---CCCTCTATCT-----------------------------------------------------------------------------TTCACCTGTC-------------------------------------------------------------GCCGTATTTGCATGC-----------------CTACC--------GTTAT--TTCGGCG--------------------TAAG--------------------------------------------------------------------------------CGTAAACCTCACTCGGA--------------ATGCTTACGCGCAAACTGTGCATTTGTGTGTGTGAGTGTGTGTATGT------------------------------------G----------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GATCAAGCGCATTATCAAGGAGGTTAAAGATCTAATGAGTGCCGCTAAAGGTGAGTAC-ACACACAGA-------------AACGCC---AA---------AGTTAATGTTATTC------------------------TCTCAT-----------------------------------------------------------------------------------------------------------------------------------------TTTCTTTATT-----GCTCCCTCTCTCTATCTCT--------------------------CTCTC-------------------------------------------------T----GTTAGTCAGGCGAACGTGCGCTC--TCGTGCGTGAGACCGCG------------------------------------------------------------CTG--CTCAC------------------------------------------------------CCTGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG--------CTTGTGTG------------TGT----------CGACGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCGCAAATAAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................ATCTAATGAGTGCCGCTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................GGTTAAAGATCTAATGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.......CGCATTATCAAGGAGGTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCGCTC--TCGTGCGTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..........ATTATCAAGGAGGTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTC--TCGTGCGTGAGACCGCG------------------------------------------------------------CT...............................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
GATCAAGCGCATTATCAAGGAGGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.......................TTAAAGATCTAATGAGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.......................TTAAAGATCTAATGAGTGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
................AAGGAGGTTAAAGATCTAATGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG--------CT........................................................................................................................17200.051000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG----------TGTGTG--------CTTGTGTG------------TG....................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG--------CT........................................................................................................................24200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
GATCAAGCGCATTATCAAAGAGGTTAAAGATCTAATGAGTGCCGCAAAAGGTGAGTAC-ACACACGCATACTACGTATGGTAATGGT---AAACCTTTAAATGTTA------CAC------------------------TCGCCCTCT-------------------------------------------------------------------------------------------------------------------------------------C-------------------GCTCTTGC--------------TCGC----GCGCCTC-----------------------------------------TTCG-AG-------------CTGCTAGTGAAGCGAACGTGCGCTC--TCGTGCGTGAGAATGCGCTCGCTCGCTGTGTCG------------------CTCTGT-------GTTCGTG--T--------------------------------------A--------T----------------------GTGCTTGT-------------------------------------------------------------------------------------------ATGCGTGTG--------TGTGTGTA----------------------------TTTGTGTGTTTGTCGATGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCGCAAATAAAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............ATCAAAGAGGTTAAAGATCTAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
...............CAAAGAGGTTAAAGATCTAATGAGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..........ATTATCAAAGAGGTTAAAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.ATCAAGCGCATTATCAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................TA------CAC------------------------TCGCCCTCT-------------------------------------------------------------------------------------------------------------------------------------C-------------------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
GATCAAGCGCATTATCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........ATTATCAAAGAGGTTAAAGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.ATCAAGCGCATTATCAAAGAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droGri2
GATCAAGCGCATTATCAAAGAGGTTAAAGATCTAATGAGTGCCGCAAAAGGTGAGTACGAAACACA---------------AAAGCA---AA---------TGTTAATTTTACTC------------------------ACTC--TC-----------------------------------------------------------------------------------------------------------------------------------------TCTCACTC-----GCCCCCTCTCTCTCTCTCTAACACAC--------------------TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTC---TGCTTCTCTGTTAGTCAAGCGGACGCACGCTCTTTCGTGCATGAGATCGTGCTCGTTCACCCTCT----------------CTCTCTCTCT-------CTCTTTA----------------------------------------TCACTCTATAT----------------------ATATATAT--ATG-----------------------------------------------------------------------------------------TGTG------------TGTGTG----------------------------TGTG----------TATGCCTGTCAAGGTCAACCAGTA---------------------------------------------------GCACAAATAAACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATA-AATCGCAGCACCGAGAAGAAACAACAATTAACGAA-----CCCAAATTGCATGCAACATACG---------------GCAAAAGACAT---------------AGTTTTTCTTATATATAGATATTT--------TTTTTTTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTTT------------------TTTGCGACTTTCTCTTCT------------------------------------------T-------T-----------------------------------------------------G-----------------TGTGT----------GTATGAG-------------TTG--GT----------------------------------------------------------GTGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG----------------------------TGTG--TGTGTG--------T---------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--GT----------------------------------------------------------GTGTGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTG....................................................................................................................................25200.10200002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-------------TTG--GT----------------------------------------------------------GTGTGT--GTGT....................................................................................................................................................................................................................................................18100.10100010
dp5
ATAT-------------------------------------------------------------------------------------------------------TGTTTTTTCCTCATCATCATCCTCCTCTTCGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTCC---------------TCCT---------TTTCTTTTTT------------------------------------------T-------T-----------------------------------------------------G-----------------CATGT----------GCACT--CGCT---------C---------------------------------------------------------------CGTGTGT--GTGTGTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------CGTGTGTG------------TGCTTGTGCTTGTC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGT----------GCACT--CGCT---------C---------------------------------------------------------------CGTGTG...........................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTGTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------CGTGTG....................................................................................................................24200.0510000010000
droPer2
AGCAATACG---------------------------------------------------------G------------------------A---------AGTTAAGGTCGCTC------------------------GTTCAG---------------------------------------------------------------------TCGCTGCCA------------------------------------------------------------GTGCCGACTGTTGC---TCATCTCCCGACGATT--------------------------CTCTCTGTAGGTGTGTGTG-----------------------------------T----------------------------------------------------------GTGG------------------GCGTGT-------GTGTGTG--T--------------------------------------G--------TGCGATTGTTGGAGAGTGCACTAGTGT--GTGCGTG---------------------------------------------------------------------------------------TGTGTGTGTG------TGTGTGTG----------------------------TGTG----------TGTGTGTGGCAAATGCGGCCGGTA---------------------------------------------------G------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--GTGCGTG---------------------------------------------------------------------------------------TGTGTGTGTG------..........................................................................................................................................21200.204000004
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGT-------GTGTGTG--T--------------------------------------G--------TGCG.................................................................................................................................................................................................................................................................................18200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTG---------------------------------------------------------------------------------------TGTGTGTGTG------TGTGTGTG----------------------------T.....................................................................................................23200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGT-------GTGTGTG--T--------------------------------------G--------TGCG.................................................................................................................................................................................................................................................................................19200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTG---------------------------------------------------------------------------------------TGTGTGTGTG------TGTGTGTG----------------------------TGTG----------TGT.....................................................................................30200.051000001
droAna3
TTTT-------------------------------------------------------------------------------------------------------CC-----T------------------------CACATCTCCC----------------------------------------------------------------------------T-------------------------------------------------------CACTTTTCC---------------------------------TCAC----------------------------------------------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTCATGTGCTCAA--GAGTTTTCTCGCCGTGTGTGTGCCA-GCAGCGGGT--------------GTGCGTGC---------GTGTGTGTG----------TGTGTG------------TGTGTGTGTGTGTGTGTGT----------TTATTTTT-----------------CGCCACATT-----G--------------C------------GGCCATCGAGTGTAAACAAAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----------TGTGTG------------TGTGTGTGTGTG..........................................................................................................21200.306000006
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG------------TGTGTGTGTGTGTG........................................................................................................20200.255000005
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGT----------TTATT....................................................................................2140.251000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGC---------GTGTGTGTG----------TG......................................................................................................................................1950.201000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT--------------GTGCGTGC---------GTGTGTG....................................................................................................................................................1860.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC---------GTGTGTGTG----------TGTGTG------------TGTGT.................................................................................................................24200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG------------TGTGTGTGTGTGTGTGTGT----------.........................................................................................23200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------GTGTGTGTG----------TGTGTG------------TGT...................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TGTGTGTGTGTGTGTGTGT----------T........................................................................................21200.051100000
droBip1
TTTG-------------------------------------------------------------------------------------------------------TGTTCTTC------------------------TTGCCTG-----------------------------------------------------------------------------TCT-------------------------------------------------------------------------------------------------TTGC-------------------------------------ATTTCTCCCTGTTTGTTTTAGCCTT---TGTTTGTT---------------------------------------------TGTTAGCCCTGT---------------------------------TTGTTTG----------------------------------------TAGTTCTAGCC----------------------ATGTGTGT--ATG-----------------------------------------------------------------------------------------TACGAG----------CATGTG----------------------------TTTT--TGGGTGTCT--ACTTGG-----------------------------------------TAGA------------AACGAAAAAATAATAAAAAACGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGA-------------------------AGCTTTTGAGGGTCGCGGTGAG---GGAC-ACACACAGC-------------ATTAGA---------------------G---------------------------------------------------------------------------------------------ACGAAAAATTCTTCAATGCTC------------------------------------GC----AC---------------TCTCC--T--------CTCTCTCTCTCTCTCTCT--------------------------CTCTC-------------------------------------------------T----GTGCAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGAAAGAGCTCTCT-TGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTCT-------------------------------------------------------------------------------------------------------CG-----C------------------------TCTCTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------TCTACCCCTCCCT--------------------------------------------------G-----------------------------------T----------------------------------------------------------TTTG------------------CCCTCT-------CTTTATGGCT----------------------------------------------------------------------------G----------------------------------------------TGCAA-ACGTTGATTCATTAAAATTCAATTTTCGC---------------TCTTGTCCGTGTGTGTGTGTGTGTGCGTGCTTCGTTT------------AAT----------TGAACCCTGTAA----------------CAGATT-----GCGTTACATCAACATATAGATTGAATAA--------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
GTTG-------------------------------------------------------------------------------------------------------CT-----C------------------------TTTCCTTTCCTTTATTTTATTATTTTTTTTTTCTGCTGGCAGGATGAACTATCACAAAG----CC-ATAAAACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------CGCCTG----------------------------------------TGGC--------------------------TGCATGT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------GTTATG--------GGTGTGTG------------GGTGTAC----------GTCTGT-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTA-------------------------------------------------------------------------------------------------------TT-----T------------------------TTTCCTTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTCTC------------------TTTCTGTCTCGC------------------------------------------------------------------------------------------------------ACTTGTTTG-----------------CTTGTGTCCTTTTTT-------CTCCACG----------------------------------------TGAGTCTCGAC----------------------GCCT--GTGTGTG-------------------------------------------------------------------------------------------TGTG----------TGTGTG----------------------------TTTG--TGGGTA--------T---------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACACACAC--A-------------------------------------------------------CT-------------AACACC---------------------G---------------------------------------------------------------------------------------------AC-----------------------------ACTAAC----ACTCACACACCTTTGTGGCAGACACGC--GTACTGTCTGTC---------------------TCCCTCCCCCTCGCACCC--ACAGTCTGGCCTCGC------------------------------------------------------------------------------------------ACTTTGCAATGCA--GCCATGCCATGT---------------------------------CTGTGTGACTGCCTCG--GTGTC----------------------------------------------------------GGT--GT-------------------------------------------------------------------------------------------GCGCAAGTGTGTGTGTGTGTGTGTGTCTGC------------------------------------G----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTTC-------------------------------------------------------------------------------------------------------TT-----T---------------------TGCCTACTCTC------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------TTCT-----------------------ATCTCTCTCTC-----------------------------------T----------------------------------------------------------GTCG------------------CTCTCT-------CTTTCTG--T--------------------------------------A--------CTTAAC--------------TGTCTGT--GTGTGTG-------------------------------------------------------------------------------------------TATG----------CTTGTG----------------------------TCTG--TGTGTG--------TTGCACATATCCTT----TAAAAGTTTAAACGA-----------GAGCAGCCGCCAAAATAACGGTAAAGTGTAAAGGAGAGSizeHit CountTotal NormTotal
No Reads
droEug1
ATGT----------------------------------------------------------------------------------------------------AAATTTCTCTC------------------------TTTC-----------------------------------------------------------------------------------------------------------------------------------------------TCTCTC-----GCTCGCTCTATCT------------------------------------------------------------------------------T---C-------------------------------------------------ATGCGCCTGCTGTCTCT------------------TTCTGTTTCTGAG-------------CTG--G------------------------------------------------------------------------------------------------------------------------------------CACAATTTCAGTGTTGT---------------TGCTGTCGCTTTGGTGACGTAT---------------------------TTTAT----------ATGTCTGCCAGAGGCTTCCGCATGGCC-----ACCCAA-----------AAGCCACCCCCAAACC--------------------ACSizeHit CountTotal NormTotal
No Reads
dm3
CATCAA-----------------------------------------------------------------------------------------------------TGTTGCTG------------------------TTGCTTT-----------------------------------------------------------------------------TTCTTCGA----------------------------------------------------TTTTCCTTGGC--------------------------------------------------------------------------------GTTTCCTTTATTTTTCCTTCGTT------------------------------------------------G----G---------CAAACTTGTTTTT------------TAT--CGCT---------TTG--TTCTA--TT--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------2171.43100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000200010000
.................................................................................................................................................T-----------------------------------------------------------------------------TTCTTCGA----------------------------------------------------TTTTCCTTGGC--------------------------------------------------------------------------------GTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................TTT-----------------------------------------------------------------------------TTCTTCGA----------------------------------------------------TTTTCCTTGGC--------------------------------------------------------------------------------GTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TT--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------..........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTA--TT--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------...........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGT.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------..........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------T.........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------......................................................................................................21200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000017000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTG..................................................................................................25200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001100000000000000000000000000000000000100000000000002000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGT.....................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------GGTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTG......................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTG....................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTG..................................................................................................26200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000030000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTG..................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTGTGCG..............................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TG....................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TG........................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------20110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------18190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG------------TGTGTGCGTGTGT.........................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTGTGC...............................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000101000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGTGTGC...............................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGT.....................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------------TGTGTGCGTGTGT.........................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTG....................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------......................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------------------------TGTGTGTG------------TGTGTGCGTGTGT.........................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGT...................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTG------------------------TGTGTGTG------------TGTGTGCG..............................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGT...................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TG....................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TG....................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTG------------------------TGTGTGTG------------TGTGTGC...............................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGT.......................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------------------------TGTGTGTG------------TG....................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG------------TGTGTGCGTGTGTC----------------------------------------------------------------------------------------19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TG........................................................................................................................21140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGT.....................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------......................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------T.....................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------TGTGTGTG------------TGTGTGCGTG............................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------------------------TGTGTGTG------------TGTGTGCGT.............................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG------------------------TGTGTGTG------------TGTGT.................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------T.........................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------------------------TGTGTGTG------------TGTGTGCGTG............................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-------------------------------------------------------------------------------------GTGTGTGTG------------------------TGTGTGTG------------TGT...................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droSim2
AGTCGAGCGGATGGGCGA-----TTAGAAATGTGGGAGTGGCTGGACAGGGTGGCGATGGGTCATT----------------------------------------------CGC------------------------AGGGATT----------------------------------------------------ACATTCCGTT---------------TTGTTCAAAAATTAATAGAATTTCATAAGCTTTTTCGGTTGCGTTGCTGTCTCTGTCTGTC---------------------TATCTCGCTCTCATTCCC--AT----------------------------------------------------------------------------------------CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTCTCTGTCGCTCGA--TGCACTGCTCTCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTCTCTGTCGC...................................................................................................................................................................................................................................1511.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTCTCTGTCGCC..................................................................................................................................................................................................................................1680.13100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTCTCTGTCGCCA.................................................................................................................................................................................................................................18200.10200000002000000000
droSec2
ACACACACA---------------------------------------------------------GA-------------GAAGCA---GA----------------A---------------------------------------------------------------------------------------------GC-ATAAATCTT--------------------------------TCGACACTTTTTCAT---------------------AGTCTACTTT-----GCTGCGTCTCTCTGTCTGT--------------------------CCATC-------------------------------------------------T----GTA---------------------------------------------------------------------------------------------------C---------------------------------------------------------------TGCATGT--GTATGTGTGTGCGTGTATGAGGGGA--GGGGGTATTCCCCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTTC-------------------------------------------------------------------------------------------------------CT-----G------------------------TTTGTCTCTC----------------------------------------------------------------------------T-------------------------------------------------------TTCTGTTTTCTGCTGG---TCTTCTTTTG--------------------------------------------------------------------------GGCTG---TTTTCCTT---------------------------------------------GGTTCGCTTTGT---------------------------------TTACC--------GTTAG--CTCTCTGCAATTGCGGTACGTGCAGAT-G-CCCGACTT----------------------ATCT----GCGTG---------------------------------------------------------------------------------------------TG----TGTGTGTGTGTGTGTGT------------------------------------G----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAGT----------------------------------------------------------------------------------------------------CACAGTCTCTC------------------------TCT-------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCTTTCGATAA---CCCTCTATCT-----------------------------------------------------------------------------TTCACCTGTC-------------------------------------------------------------GCCGTATTTGCATGC-----------------CTACC--------GTTAT--TTCGGCG--------------------TAAG--------------------------------------------------------------------------------CGTAAACCTCACTCGGA--------------ATGCTTACGCGCAAACTGTGCATTTGTGTGTGTGAGTGTGTGTATGT------------------------------------G----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGTGCATTTGTGTGT.............................................................................................................................................1911.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGTGTGTGAGTGTGTGTATGT------------------------------------.........................................................................................2611.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGTGTGTGAGTGT.....................................................................................................................................1920.5010001000

Generated: 05/16/2015 at 11:08 PM