dvi_13724

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGCCGCTCCAGCTGAGAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTCCAATTATCATCAGCAGCCGCTGGCCATTCCAATCGCAATTTACGTTGCCTTTAAATAATTGTAATCAATGGCATTTGAACAATTTTTTTTTTTTTGCGTTCAATCGATTGCCTTGCCGAAGCTTCCAAGAGTTGCTTCTTACTTTGCTGCCGTCGCGGGGGCGTGGCCCAGTCTCGGCAATTTGCCGGATC ************************************************.....................((((((.((((((.....((((((......((((.......(((.((((((..((((......)))))))))).))).......)))).....))))))....)))..)))........)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	V116 male body	M047 female body	V047 embryo	SRR1106723 embryo_12-14h	V053 head	SRR060684 140x9_0-2h_embryos_total
...AGCTCCAGCTGAGAATTTCCCCTTC...............................................................................................................................................................................................................................	25	1	1	3.00	3	3	0	0	0	0	0	0
.............................................................................................................................CCACGGCATTTGAACAATTT..........................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0
.........GGGTGAGAATTTCCCCTTCTGCAC..........................................................................................................................................................................................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAGAGTCG.....................................................................................................................................................................................................	28	3	1	1.00	1	0	0	0	1	0	0	0
...AGCTCCAGCTGAGTATTTCCCCTTC...............................................................................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
...AGCTCCAGCTGAGCATTTCCCCTTC...............................................................................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
...............................ACCATTAAGCCCAATGAGAGT.......................................................................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
........CAGCTGAGAATTTCCCCTTCTG.............................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
.........GGGTGAGTATTTCCCCTTCTGCAC..........................................................................................................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0	0	0
.......................CCTTCGGGACCCTTAAGCCC................................................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	0	1	0	0
...............................................................................................................................ACGGCATTTGAACAATTTTA........................................................................................................	20	2	5	0.20	1	0	0	1	0	0	0	0
..............................................................................................................................AATGGCACTGGAACAATTT..........................................................................................................	19	2	11	0.09	1	0	0	0	0	0	1	0
..............................................................................................................................AATGGCACTGGAAGAATTTTT........................................................................................................	21	3	12	0.08	1	0	1	0	0	0	0	0
.........................................................................................................................................................................TCATTGACGAAGCTTCCAAG..............................................................	20	3	12	0.08	1	0	0	0	0	0	0	1

GCGGCGAGGTCGACTCTTAAAGGGGAAGACGTGGTAATTCGGGTTACTCTTATTCATAAGGTTAATAGTAGTCGTCGGCGACCGGTAAGGTTAGCGTTAAATGCAACGGAAATTTATTAACATTAGTTACCGTAAACTTGTTAAAAAAAAAAAAACGCAAGTTAGCTAACGGAACGGCTTCGAAGGTTCTCAACGAAGAATGAAACGACGGCAGCGCCCCCGCACCGGGTCAGAGCCGTTAAACGGCCTAG ************************************************.....................((((((.((((((.....((((((......((((.......(((.((((((..((((......)))))))))).))).......)))).....))))))....)))..)))........)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060678 9x140_testes_total	SRR060657 140_testes_total	V053 head	SRR060672 9x160_females_carcasses_total	SRR1106729 mixed whole adult body	M047 female body	SRR060685 9xArg_0-2h_embryos_total
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGG.......................	18	2	2	1.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGGAT.....................	20	3	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGGATC....................	21	3	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................GGCGGCGCCCCCGAACCGGTT.....................	21	3	5	0.20	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGGT......................	19	3	20	0.15	3	0	3	0	0	0	0	0
..............TCTAAAAGGGTGAGACGTGG.........................................................................................................................................................................................................................	20	3	7	0.14	1	0	1	0	0	0	0	0
...............................................................................................................................TACCGTAAACTCATTAAGAAAA......................................................................................................	22	3	8	0.13	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................GTCAGAGCCATTATACG......	17	2	16	0.13	2	0	0	0	0	2	0	0
.................TAAAGCGGAAGACGTGGTTGT.....................................................................................................................................................................................................................	21	3	8	0.13	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGGA......................	19	3	17	0.12	2	1	0	0	0	0	0	1
..................................................................................................................................................................................................................GCGGCGCCCCCGAACCGGTT.....................	20	3	12	0.08	1	0	1	0	0	0	0	0
.................................................................TTGTACTCGTCGGCGACCG.......................................................................................................................................................................	19	2	13	0.08	1	0	0	0	0	0	1	0
...............CTTAAAGGGAAAGTCGTAGT........................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:9128441-9128691 -	dvi_13724	CGCCGCTCCAGCTGAGAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTCCAA-TTATCA----------------------------------------------------------------------------------TCAGCA-----GCCGCTGGCC-----------------------ATTCCA----ATCGCAATTTACGTTGCCTTT--A---AATAATTGTAATCAATGGCA-TTTGAA--CAATTTTTTTTT----T-TTTGCGTTCAATCGATTGCCTT-------------------------GCCGAAGCTTCCAAGAGTTGCTTCTTA---------CTTTGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----GCCCAGTCT---------CGGCAATT-TGCCGGATC
droMoj3	scaffold_6473:16248359-16248600 +	dmo_802	CGCCGCGCCGGCCGAAAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------ATTGGA----GTCGCAATTTGCGTTGCCTCC--A---AATAATTGTAATCAATG------------CAATTTTT----------TGTCCGTTCGGGGCATTGCATT-------------------------GCCGCAGCTTCCCTGTGTCGCTTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----TCCCAATCT---------CGGCAATT-TGCCAGATC
droGri2	scaffold_15203:11812947-11813265 -		CGCTGCTCCAGCGGAGAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTACCAATTACCATATCTATATACATATACATGTACATATATATATATATATATATATATATATATATATCTATGTATATGTATATGTATATATAT-AGC------GCCGCTGGCAAATATTT----------------ATTGCA----ATAGCAATTTGCGTTGCCTTTTCGGATAATCATTGTAATCAATGGCA-TTTGAA--CAATTTTG----------------------------------------TTGCTGTTGTTGCCTTTGCCGCAGCTTCCAAGT-----------------------------------------------------------------------------------------------------GGGCGTGTTGCGCACCGTCTCTCAGGCAATGGCAATT-TGTCGAATC
droWil2	scf2_1100000004909:3258279-3258346 -		CGCTGCCCCCGCGGAGAATTTCCCCTTCTGCACGATTAAGCCCAATGAGAATAAGTATTTCCAATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group3a:906610-906907 +		CGCCGCCCCGGCGGAGAACTTCCCCTTTTGCACGATCAAGCCGAATGAGAATAAGTATTACCAATTATC---------------------------------------------------------------------------------CATCGGC-------CCGCGGGCCCCCAGGGCCCCGCAAAATCCAAAAATCCAGGCGGGGGCAATTT-------CTT------TAATCATTGTAATCAGT---ATTTTGAATATAATTTTTATTCAAGACTTGT-CGA---TGGCAATGGACTGCCCCCAGGAGCGGTCGCCACATCCAC-------------AGCCGCTTCTAATTCCAAATTGCTTGCTGGCTCCGCCTGCACTGGACGCGGGGCTGGTCTGGGTCTGGGTC------------------------------------------------------------------------TGGGTC
droPer2	scaffold_15:1989975-1990331 -		CGCCGCCCCGGCGGAGAACTTCCCCTTTTGCACGATCAAGCCGAATGAGAATAAGTATTACCAATTATC---------------------------------------------------------------------------------CATCGGC-------CCGCGGGCCCCCAGGGCCCCGCAAAATCCAAAAATCCAGGCGGGGGCAATTT-------CTT------TAATCATTGTAATCAGT---ATTTTGAATATAATTTTTATTCAAGACTTGT-CGA---TGGCAATGGACTGCCCCCAGGAGCAGTCGCCACATCCAC-------------AGCCGCTTCTAATTCCAAATTGCTTGCTGGCTCCGCCTGCACTGGACGCGGGGCTGGTCTGGGTCTGGGTCTGGTCCTTCTAAAAAGAAACTATTTCGTTTGGGGCGTG----TCGCGGCCT---------TAGCAATTTTATCAGATC
droAna3	scaffold_13337:3499410-3499459 +		CGCTGCCCCCGCTGAGAATTTCCCCTTCTGCACCATCAAGCCCAACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396387:108291-108340 -		CGCCGCTCCCGCAGAGAATTTCCCCTTCTGCACCATCAAGCCCAATGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302592:591922-591987 -		CGCTGCTCCCGCGGAGAACTTTCCCTTCTGCACCATCAAGCCGAATGATAATAAGTATCCCCA-CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454073:2609916-2609978 +		CGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491013:529940-530000 +		TGCCGCCCCCGCGGAGAATTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000780080:401425-401485 -		TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301760:5673757-5673819 +		CGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415872:320646-320706 +		TGCCGCCCCCGCGGAGAACTTTCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409032:214395-214455 -		TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:9673226-9673286 +		TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:9217355-9217415 +		TGCCGCCCCCGCGGAGAACTTCCCTTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_15:437125-437185 +		TGCCGCCCCCGCGGAGAACTTCCCTTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:18274256-18274316 +		TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:5439379-5439439 -		TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGCCGCTCCAGCTGAGAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTCCAA-TTATCA----------------------------------------------------------------------------------TCAGCA-----GCCGCTGGCC-----------------------ATTCCA----ATCGCAATTTACGTTGCCTTT--A---AATAATTGTAATCAATGGCA-TTTGAA--CAATTTTTTTTT----T-TTTGCGTTCAATCGATTGCCTT-------------------------GCCGAAGCTTCCAAGAGTTGCTTCTTA---------CTTTGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----GCCCAGTCT---------CGGCAATT-TGCCGGATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........CAGCTGAGAATTTCCCCTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGCCGCGCCGGCCGAAAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------ATTGGA----GTCGCAATTTGCGTTGCCTCC--A---AATAATTGTAATCAATG------------CAATTTTT----------TGTCCGTTCGGGGCATTGCATT-------------------------GCCGCAGCTTCCCTGTGTCGCTTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----TCCCAATCT---------CGGCAATT-TGCCAGATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGG................................................................................................................................................................................................................................................................................................................................	25	1	49.00	49	48	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGG.............................................	25	1	23.00	23	22	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GG..............................................	24	1	23.00	23	18	0	0	0	4	1
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGC...............................................................................................................................................................................................................................................................................................................................	26	1	22.00	22	20	0	0	0	2	0
...............................................................................................................................................................................................................................................TGTAATCAATG------------CAATTTTT----------TGTCCGT............................................................................................................................................................................................................	26	1	21.00	21	20	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGG.............................................	24	1	14.00	14	12	1	0	0	0	1
..........................TCTGCACCATTAAGCCCAATGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	6	0	0	0	4	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GG..............................................	23	1	9.00	9	8	0	0	0	1	0
..........................TCTGCACCATTAAGCCCAATGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	9.00	9	7	0	0	0	2	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCG.................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	7	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------G...............................................	23	1	7.00	7	7	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCC..................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	2	0	0	0	5	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------A......................................................................................................................................................................................................................................................................................................	28	1	7.00	7	7	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------AT.....................................................................................................................................................................................................................................................................................................	29	1	6.00	6	6	0	0	0	0	0
.................................................................TACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGG................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	5	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------G...............................................	22	1	5.00	5	4	1	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	5	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGC...........................................	26	1	5.00	5	3	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGG............................................	26	1	5.00	5	5	0	0	0	0	0
.......................................................TATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATG.......................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	3	0	0	0	0	1
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGC...................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	4	0	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAGAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGG............................................	25	1	3.00	3	3	0	0	0	0	0
....................TCCCCTTCTGCACCATTAAGCCCAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	2	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................TCCCTGTGTCGCTTCTAT---------GTTGGC..........................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCC..................................................................................................................................................................................................................................................................................................................................	29	1	3.00	3	2	0	0	0	1	0
.................................................................TACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGC...............................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
....................TCCCCTTCTGCACCATTAAGCCCAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATG.......................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTAATCAATG------------CAATTTTT----------TGTCCG.............................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..................................................ATAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGC..............................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTAATCAATG------------CAATTTTT----------TGTCCGTC...........................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	0	1
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGC...................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................CTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GG..............................................	22	1	2.00	2	2	0	0	0	0	0
..........................................................TCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCC..................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
....................TCCCCTTCTGCACCATTAAGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................GTAATCAATG------------CAATTTTT----------TGTCCGT............................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGA................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...................................................TAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGA.........................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..................................................ATAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCT.............................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................TCCCTGTGTCGCTTCTAT---------GTTGG...........................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..................TTTCCCCTTCTGCACCATTAAGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
...................................................TAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTG............................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGCG..........................................	27	1	2.00	2	2	0	0	0	0	0
...................TTCCCCTTCTGCACCATTAAGCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
...........................CTGCACCATTAAGCCCAATGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCG....................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..........................TCTGCACCATTAAGCCCAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTGCATT-------------------------GCCGCAGCTTCCCTC.....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................TACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------AT.....................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTAATCAATG------------CAATTTTT----------TGTCCGTTC..........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................TCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGC...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................CTGCACCATTAAGCCCAATGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------T......................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCGGGGCATTGCATT-------------------------GCCGCAGCTTC.........................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TC-------------GCG---------------------------------------------------GGGGCGTG----TCCCAATCT---------CGGC..............	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AATCAATG------------CAATTTTT----------TGTCCGTC...........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......GCCGGCCGAAAATTTCCCCTTCTGCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....................TCCCCTTCTGCACCATTAAGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................A-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGG................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................TGCACCATTAAGCCCAATGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................T---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----T...................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TCCCAATCT---------CGGCAATT-TGCCAGATC	28	1	1.00	1	1	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGGCC-----------------------.......................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TGTCCGTTCGGGGCATTGCATT-------------------------GCCGCA..............................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCC.....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................TGTCCGTTCGGGGCATTGCATT-------------------------G...................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................TATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGC......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................T---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGCGTG----....................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................TAATCAATG------------CAATTTTT----------TGTCCGTTCGG........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................TCAATG------------CAATTTTT----------TGTCCGTTCGGGGCA....................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGG.............................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGG...........................................	26	1	1.00	1	0	1	0	0	0	0
...................................................TAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCT.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................TCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCG.................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGC...........................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TC-------------GCG---------------------------------------------------GGGGCGTG----TCCCAATCT---------CG................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GTAATCAATG------------CAATTTTT----------TGTCCG.............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................A-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCC..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGAT........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................TAT---------GTTGGCTGCCGTC-------------GCG---------------------------------------------------GGGGC...........................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................ACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGG................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................A---------------------------------------------------------------------------------AG-AGCTGCGATGCCGCCGG................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TTGGA----GTCGCAATTTGCGTC..............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCCCTGTGTCGCTTCTAT---------GTTGGCTG........................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................TCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGC......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................TTCCCTGTGTCGCTTCTAT---------GTTGGCTG........................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCCT....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................CATTAAGCCCAATGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................TTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGATGCC.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................AAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCT.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................ATAAGTATTCCAA-TTACCA---------------------------------------------------------------------------------AG-AGCTGCGA.........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................TCGCAATTTGCGTTGCCTCC--A---AATA..............................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTAATCAATG------------CAATTTTT----------TGTCCGTT...........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................TCCCCTTCTGCACCATTAAGCCCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................TTCTGCACCATTAAGCCCAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................ATTAAGCCCAATGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0

droGri2

CGCTGCTCCAGCGGAGAATTTCCCCTTCTGCACCATTAAGCCCAATGAGAATAAGTATTACCAATTACCATATCTATATACATATACATGTACATATATATATATATATATATATATATATATATATCTATGTATATGTATATGTATATATAT-AGC------GCCGCTGGCAAATATTT----------------ATTGCA----ATAGCAATTTGCGTTGCCTTTTCGGATAATCATTGTAATCAATGGCA-TTTGAA--CAATTTTG----------------------------------------TTGCTGTTGTTGCCTTTGCCGCAGCTTCCAAGT-----------------------------------------------------------------------------------------------------GGGCGTGTTGCGCACCGTCTCTCAGGCAATGGCAATT-TGTCGAATC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CGCTGCCCCCGCGGAGAATTTCCCCTTCTGCACGATTAAGCCCAATGAGAATAAGTATTTCCAATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................TTCCCCTTCTGCACGATTAAGCCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................TCCCCTTCTGCACGATTAAGCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
................................CGATTAAGCCCAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1

dp5

CGCCGCCCCGGCGGAGAACTTCCCCTTTTGCACGATCAAGCCGAATGAGAATAAGTATTACCAATTATC---------------------------------------------------------------------------------CATCGGC-------CCGCGGGCCCCCAGGGCCCCGCAAAATCCAAAAATCCAGGCGGGGGCAATTT-------CTT------TAATCATTGTAATCAGT---ATTTTGAATATAATTTTTATTCAAGACTTGT-CGA---TGGCAATGGACTGCCCCCAGGAGCGGTCGCCACATCCAC-------------AGCCGCTTCTAATTCCAAATTGCTTGCTGGCTCCGCCTGCACTGGACGCGGGGCTGGTCTGGGTCTGGGTC------------------------------------------------------------------------TGGGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............GGAGAACTTCCCCTTTTGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	2	0	1	0	0	0	0	0	0
...........CGGAGAACTTCCCCTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........CGGAGAACTTCCCCTTTTGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GAGAACTTCCCCTTTTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TCCCCTTTTGCACGATCAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................CGATCAAGCCGAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CACGATCAAGCCGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GAACTTCCCCTTTTGCACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................TTCCCCTTTTGCACGATCAAGCCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CACGATCAAGCCGAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GAACTTCCCCTTTTGCACGATCAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................ACTTCCCCTTTTGCACGATCAAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CTTTTGCACGATCAAGCCGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGCCGCCCCGGCGGAGAACTTCCCCTTTTGCACGATCAAGCCGAATGAGAATAAGTATTACCAATTATC---------------------------------------------------------------------------------CATCGGC-------CCGCGGGCCCCCAGGGCCCCGCAAAATCCAAAAATCCAGGCGGGGGCAATTT-------CTT------TAATCATTGTAATCAGT---ATTTTGAATATAATTTTTATTCAAGACTTGT-CGA---TGGCAATGGACTGCCCCCAGGAGCAGTCGCCACATCCAC-------------AGCCGCTTCTAATTCCAAATTGCTTGCTGGCTCCGCCTGCACTGGACGCGGGGCTGGTCTGGGTCTGGGTCTGGTCCTTCTAAAAAGAAACTATTTCGTTTGGGGCGTG----TCGCGGCCT---------TAGCAATTTTATCAGATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................GACTTGT-CGA---TGGCAATGGACT.............................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CAAGACTTGT-CGA---TGGCAATGGACT.............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................ATTATC---------------------------------------------------------------------------------CATCGGC-------CCGCGGGC...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droAna3

CGCTGCCCCCGCTGAGAATTTCCCCTTCTGCACCATCAAGCCCAACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................CTGCACCATCAAGCCCAACGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......CCCGCTGAGAATTTCCCCTTCTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............................CACCATCAAGCCCAACGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................CCCTTCTGCACCATCAAGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

CGCCGCTCCCGCAGAGAATTTCCCCTTCTGCACCATCAAGCCCAATGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGCTGCTCCCGCGGAGAACTTTCCCTTCTGCACCATCAAGCCGAATGATAATAAGTATCCCCA-CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCCGCCCCCGCGGAGAATTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCCGCCCCCGCGGAGAACTTTCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................CCATCAAGCCGAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......CCCCGCGGAGAACTTCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CCTTCTGCACCATCAAGCCGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCGGAGAACTTCCCCTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACCATCAAGCCGAATGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AACTTCCCCTTCTGCACCATCAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACTTCCCCTTCTGCACCATCAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGCCGCCCCCGCGGAGAACTTCCCTTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............GGAGAACTTCCCTTTCTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCGGAGAACTTCCCTTTCTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGCCGCCCCCGCGGAGAACTTCCCTTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........CGCGGAGAACTTCCCTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.............................GCACCATCAAGCCGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..............................CACCATCAAGCCGAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................TCTGCACCATCAAGCCGAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............GGAGAACTTCCCCTTCTGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............GAACTTCCCCTTCTGCACCATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TGCCGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAATAAGTATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.GCCGCCCCCGCGGAGAACTTCCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
TGCCGCCCCCGCGGAGAACTTCCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.............................GCACCATCAAGCCGAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0

dvi_13724

scaffold_12970:9128491-9128641 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads