dvi_13588

exon [dvir_GLEANR_4281:2]; CDS [Dvir\GJ19388-cds]; CDS [Dvir\GJ19388-cds]; exon [dvir_GLEANR_4281:1]; intron [Dvir\GJ19388-in]; Antisense to intron [Dvir\GJ18777-in]

GCACAAGGAGATATTTTAGTGGTTCCTACCGTTTCATCGGTTCCTTACCTCATTCATTTATACGTTTGAAGATTATTGTGCGTGCGCTGCGTTTGCTATTTCGTGGCACATTTCAAGTTTCACGTCAATTGTCAGCGCATGAAGCCGTGGTCGTGACGATAAATCGATCTATCTATTATTGCTGCTGCTGGATTAACTAAAGTAATTAATTGTCGGGAGCTGACGTTCTCGCGGTTCCGCATACTCCCTGGGCGGGTCCCGCAG ********************************************************************************************************....(((..((((...((((.((((((.((........)))))))).)).))..)))))))***********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V053 head	SRR060671 9x160_males_carcasses_total	SRR060674 9x140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	M027 male body	SRR060670 9_testes_total	V047 embryo
.......................................................................................................................................................................................GCTGCTGGGTTAACTAAAGTA............................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................ACTGGTCGTGACGATAAATC...................................................................................................	20	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................ACCGTTTCATCGGTTCCTTAC........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GCTGCTGCTGGATTAACTAAA...............................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................TCTATTATTGCTGCTGCTGGG........................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CTCGCGGTTCCGCATACTCCC................	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................CAGCGCGTGAAGCCGTGGTCG...............................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCGTGCCACACTTCAAGTTT................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCGTGGCATACTTCAAGTTT................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................ATGAGGCCGTGGTCGTTA............................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................ACCTGAAGTAATTAATTGTCA.................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................GGCAGCGCAAGAAGCCATG...................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	0	0	0	0	1
...............TTAGTGGTACCTACCGTGC......................................................................................................................................................................................................................................	19	3	19	0.05	1	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:8010579-8010842 +	dvi_13588	CGTGTTCCTCTATAAAATCACCAAGGATGGCAAAGTAGCCAAGGAATGGAGTAAGTAAATATGCA--A---AC--------------------TTCTAATAACACGCACG-----------------------CGACGCAAACG-------------------------------------------------------ATAAAGCACCGTGTAAAGTTCAAAGTGCAGTTAACAGTCGCGTACTTCGGCACCAGCA-----------------CTGCTATTTAGCTAGATAGATAATAACGA---------------------CGACGACC-TAAT----T-GATT------------TCATTA-------ATTAACAGCCCTCGACTGCAAGAGCGCCAAGGCGTATGAGGGACCCGCCCAGGGCGTC
droMoj3	scaffold_6482:1520551-1520811 -		AGTATTCCTGTACAAAATCACCAAGGACGGCAAAGTGGTCAAGGAGTGGAGTAAGTCATTAAGC--------TCAA-------TATTCGCGTCTGCCAATTACACGTCTG-----------------------T------------------------------------------------------------------GCT-------AGCAAAGTTCAAAGTGCAGGCAAATAGCGCGTACTTCAGCCCTGGCTGCTACC-GCAGCAGCTACTGCTGT---GCT-------------C---------------------ATTGAAAATCTA-GTTGCTT-AA---CTC--------AACTTC-------ATTTACAGCTCTCGACTGCAAGAGTGCCAAGGCGTACGAAGGACCCGCACAGGGCGTC
droGri2	scaffold_15203:11061213-11061456 -		TGTGTTCCTCTACAAGATCACCAAGGACGGCAAGGTGGCCAAGGAATGGAGTAAGTAAAC----G--T---ACCTCTTTCGCCC---------TACACATTACACATGTG-----------------------TCGCGCAATAA-------------------------------------------------------ATGATTCACAGTGTAAAGTACAAAGTGCAATTAAATTG--CGTGTTGTGG------TTGCTGTC--------------------A---------------GCGAATA----AAT------------------CTA-AT---AT-AA-------------------TAATT-TAATGAACAGCTCTGGACTGCAAGAACGCTAAGGCCTATGAGGGACCAGCGCAGGGCGTC
droWil2	scf2_1100000004909:6418948-6419260 -		AGTTTTCCTCTACAAAATCACCAAGGGTGGCAAAGTGGCCAAGGAGTGGAGTAAGTACAT------AA---AC---TATCGATGAATGGGG-GAGTTATT-----------TACCGCATATACACACACATACACACACAAACATACACACACAGAAA-----------CACATATGCTTTGATCGGC------GAGCGAGATGG----GACCCAAGTTCAAAGTGCAGTTAAAA---TTGTACTTCGGCACCGATT---------------------------------------------AAAAAGGCAAAGTAAAACAAAATATTTA-TGA-A---TTT-AA---TTT--------TTGTTC-------TCTTACAGCTTTGGACTGCAAGAGCGCCAAGGCCTATGAAGGACCTGCTCAGGGCGTC
dp5	XL_group1e:1281849-1282181 +	dps_2629	TGTGTTTGTCTATAAAATCACCAAGGATGGCAAGGTGGCCAAGGAATGGAGTAAGTAATA------ATATT--------------------------------ACGCACGATGCCTGATACTCCAACACACACACACACACACACCCATTTTCTGTGGGTTTACGTGGTCTTTTTT----------GCGTGTGTGTGTGTGTTTT----GTGGGAAGTTCAAAGTGCG---AAATTCTTTGCACTTCGGCACCAGCTGTTTGTTG------GT-TTTCTATGTG---------------GCCAACA----AATGTAAATTACATTACCTT-TTC-G---CTT-A---TTTTCTGTGTGT-----G--TTTTTTGTTCTAGCTCTGGACTGCAAGAGCGCCAAGGCCTATGAGGGACCCGCACAGGGCGTC
droPer2	scaffold_18:127767-128080 +	dpe_914	TGTGTTTGTCTATAAAATCACCAAGGATGGCAAGGTGGCCAAGGAATGGAGTAAGTAATA------ATATT--------------------------------ACGCACGCTGCCT------------------GACACACACACTCATTTTCTGTGGGTTTACGTGGTCTTTTTT----------GCGTGTGTGTGTGTGTTTT----GTGGGAAGTTCAAAGTGCG---AAATTCTTTGCACTTCGGCACCAGCTGTTTGTTG------GT-TTTCTATGTG---------------GCCAACA----AATGTAAATTACATTACCTT-TTC-G---CTT-A---TTTTCTGTGTGT-----T--TT-TTTTTTCTAGCTCTGGACTGCAAGAGCGCCAAGGCCTATGAGGGACCCGCACAGGGCGTC
droAna3	scaffold_13248:2856455-2856507 +		C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGGACTGCAAGAACGCCAAGGCGTACGAGGGACCCGCCCAGGGCGTC
droBip1	scf7180000396429:151691-151772 -		AATAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------------CTA-AC---CTTAATA--------------TTAC-------TATTTCAGCTCTGGACTGCAAGAGCGCCAAGGCTTACGAGGGACCCGCCCAGGGCGTC
droKik1	scf7180000302592:1592471-1592549 +		TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTAATA------ATATT--------------------------------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCAAAACA-C
droFic1	scf7180000454073:1334863-1334954 -		GCAA-----------------------------AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAAAA-CTA-AT---TT-AATA------------TCTCAC-------ATTTTTAGCTCTGGACTGCAAGAACGCCAAGGCCTACGAGGGACCCGCCCAGGGCGTC
droEle1	scf7180000491044:87489-87545 -		AGTGTTCCTCTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777353:1338-1394 +		AGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302041:658249-658322 +		CTAATTCGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCC-------ACTTTCAGCCCTGGACTGCAAGAGCGCCAAGGCCTACGAGGGACCCGCCCAGGGCGTC
droTak1	scf7180000414562:527075-527157 -		ACAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----C-ATAT------------ACACTA--TT-TAACTTTCAGCTCTCGACTGCAAGAACGCCAAGGCCTACGAGGGACCCGCCCAGGGCATC
droEug1	scf7180000409008:54775-54865 +		TGTGTTCCTGTACAAAATCACCAAGGACGGCAAAGTGGCCAAGGAGTGGAGTAAGTACGC----C--A---ATCAC-------TAATTGCGC-CCGTAAAAA-------------------------------------GCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
dm3	chrX:13634096-13634204 +		TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTATCA----GTTA---TC---CATCGCCCAATGGAGC-CCATAAAAACACGCACC-------------------------ACACACACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droSim2	x:12970044-12970100 +		TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_20:272517-272573 +		TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:7928022-7928078 +		TGTGTTCCTCTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:13249438-13249494 -		CGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGTGTTCCTCTATAAAATCACCAAGGATGGCAAAGTAGCCAAGGAATGGAGTAAGTAAATATGCA--A---AC--------------------TTCTAATAACACGCACG-----------------------CGACGCAAACG-------------------------------------------------------ATAAAGCACCGTGTAAAGTTCAAAGTGCAGTTAACAGTCGCGTACTTCGGCACCAGCA-----------------CTGCTATTTAGCTAGATAGATAATAACGA---------------------CGACGACC-TAAT----T-GATT------------TCATTA-------ATTAACAGCCCTCGACTGCAAGAGCGCCAAGGCGTATGAGGGACCCGCCCAGGGCGTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGGGACCCGCCCAGGGC...	22	1	8.00	8	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGCGCCAAGGC.........................	21	1	4.00	4	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTATGAGGGACC.............	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTACTTCGGCACCAGCA-----------------CTGC........................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGCGCCAAGG..........................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...............AATCACCAAGGATGGCAAAGTAGCC......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGCGCCAAGGCGTAT.....................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGACCCGCCCAGGGCGT.	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGGGACCCGCCCAGGGCGT.	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................AACAGTCGCGTACTTCGGCA...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CCCTCGACTGCAAGAGCGCCAAG...........................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTATGAGGGACCCGCCC........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGTATGAGGGACCCGCCCAGGGC...	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................TAAAGCACCGTGTAAAGTTCA.................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGACCCGCCCAGGG....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTATGAGGGACCCGCCCAGGGC...	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTATGAGGGACCCGC..........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................TCACCAAGGATGGCAAAGTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GTTCCTCTATAAAATCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGCCAAGGCGTATGAGGGAC..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGCGCCAAGGCGT.......................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TAAAGTTCAAAGTGCAGTTAC.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGTATGAGGGACCCGC..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTATGAGGGACCCGCCCAGGGC...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................ACCAAGGATGGCAAAGTAGCCAAGGAA................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGTACTTCGGCACCAGCA-----------------CTGCT.......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAGGATGGCAAAGTAGCCAAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCACCAAGGATGGCAAAGTAGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAAGGCGTATGAGGGACC.............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CAAGGAATGGAGTAAGTAAAT..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCAAGGATGGCAAAGTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCGTATGAG..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATCACCAAGGATGGCAAAGTAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GTTCCTCTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGCGTATGAGGGACC.............	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCACCAAGGATGGCAAAGTAGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGCGCCAAG...........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAAGGCGTATGAGGGACCC............	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGCGCCAAGGC.........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGCCAAGGCGTATGAGGGACC.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTATGAGGGACCC............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AATCACCAAGGATGGCAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................AAGGATGGCAAAGTAGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCAAGGATGGCAAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGTGCAGTTAACAGTCGC..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........ATAAAATCACCAAGGATGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGGGACCCGCCCAGGGCGT.	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CCTCTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GCAAAGTAGCCAAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGCCAAGGCGTATGAGG.................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGAGCGCCAAGGCGTATGAGGGACC.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......CTCTATAAAATCACCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTATGAGGGACCCGCCCAGGG....	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCGTATGAGG.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCGTATGA...................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTATAAAATCACCAAGGATGG................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCGTATGAGGGACC.............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTATGAGGGACCCGC..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTATGAGGGA...............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGTATGAGGGACCC............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGGATGGCAAAGTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGTATTCCTGTACAAAATCACCAAGGACGGCAAAGTGGTCAAGGAGTGGAGTAAGTCATTAAGC--------TCAA-------TATTCGCGTCTGCCAATTACACGTCTG-----------------------T------------------------------------------------------------------GCT-------AGCAAAGTTCAAAGTGCAGGCAAATAGCGCGTACTTCAGCCCTGGCTGCTACC-GCAGCAGCTACTGCTGT---GCT-------------C---------------------ATTGAAAATCTA-GTTGCTT-AA---CTC--------AACTTC-------ATTTACAGCTCTCGACTGCAAGAGTGCCAAGGCGTACGAAGGACCCGCACAGGGCGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAAGGACCCGCACAGGGC...	22	1	3.00	3	1	1	0	0	1	0
..................CACCAAGGACGGCAAAGTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..................CACCAAGGACGGCAAAGTGGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
............................................................................................................TG-----------------------T------------------------------------------------------------------GCT-------AGCAAAGTTCAAAGTGC...........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTACGAAGGACCCGCAC........	20	1	1.00	1	1	0	0	0	0	0
............................GGCAAAGTGGTCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...ATTCCTGTACAAAATCACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGTGCCAAGGCGT.......................	21	1	1.00	1	1	0	0	0	0	0
.GTATTCCTGTACAAAATCACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAAGGACCCGCACAGGGCG..	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGTGCCAAGGCGTACGA...................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGCGTACGAAGGACCCGCACA.......	25	1	1.00	1	1	0	0	0	0	0
.................TCACCAAGGACGGCAAAGTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................GGCAAAGTGGTCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..TATTCCTGTACAAAATCACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAAGGACCCGCACAGGGCGT.	24	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTACGAAGGACCCGCACAGGGC...	28	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACCCGCACAGGGCGTC	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCCAAGGCGTACGAAG.................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGACCCGCACAGGGCGTC	22	1	1.00	1	1	0	0	0	0	0
..........TACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.GTATTCCTGTACAAAATCACCAAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACTGCAAGAGTGCCAAGGCGTAC.....................	25	1	1.00	1	1	0	0	0	0	0
.............................GCAAAGTGGTCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAGGACCCGCACAGGGCGTC	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAAGGACCCGCACAGGG....	21	1	1.00	1	1	0	0	0	0	0
...........ACAAAATCACCAAGGACGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TGTGTTCCTCTACAAGATCACCAAGGACGGCAAGGTGGCCAAGGAATGGAGTAAGTAAAC----G--T---ACCTCTTTCGCCC---------TACACATTACACATGTG-----------------------TCGCGCAATAA-------------------------------------------------------ATGATTCACAGTGTAAAGTACAAAGTGCAATTAAATTG--CGTGTTGTGG------TTGCTGTC--------------------A---------------GCGAATA----AAT------------------CTA-AT---AT-AA-------------------TAATT-TAATGAACAGCTCTGGACTGCAAGAACGCTAAGGCCTATGAGGGACCAGCGCAGGGCGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................ACCAAGGACGGCAAGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
...........ACAAGATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0
......................AAGGACGGCAAGGTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
..............AGATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTGGACTGCAAGAACG................................	21	1	1.00	1	0	1
............CAAGATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................CGCTAAGGCCTATGAGGGACC.............	21	1	1.00	1	1	0
....................CCAAGGACGGCAAGGTGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.............AAGATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGCAAGAACGC...............................	18	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAAGAACGCTAAGGCCTATGA...................	21	1	1.00	1	1	0
........................GGACGGCAAGGTGGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...............GATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1
.......................AGGACGGCAAGGTGGCCAAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
..............................CAAGGTGGCCAAGGAATGGA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGACCAGCGCAGGGCG..	18	1	1.00	1	1	0
...................ACCAAGGACGGCAAGGTGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.................TCACCAAGGACGGCAAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAACGCTAAGGC.........................	23	1	1.00	1	0	1

droWil2

AGTTTTCCTCTACAAAATCACCAAGGGTGGCAAAGTGGCCAAGGAGTGGAGTAAGTACAT------AA---AC---TATCGATGAATGGGG-GAGTTATT-----------TACCGCATATACACACACATACACACACAAACATACACACACAGAAA-----------CACATATGCTTTGATCGGC------GAGCGAGATGG----GACCCAAGTTCAAAGTGCAGTTAAAA---TTGTACTTCGGCACCGATT---------------------------------------------AAAAAGGCAAAGTAAAACAAAATATTTA-TGA-A---TTT-AA---TTT--------TTGTTC-------TCTTACAGCTTTGGACTGCAAGAGCGCCAAGGCCTATGAAGGACCTGCTCAGGGCGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........CTACAAAATCACCAAGGGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	41.00	41	0	3	34	4	0
.........CTACAAAATCACCAAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	13.00	13	0	3	1	9	0
.........CTACAAAATCACCAAGGGTGGCAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	0	0	9	1	0
.........CTACAAAATCACCAAGGGTGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	6	1	0
.........CTACAAAATCACCAAGGGTGGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	6	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGCGCCAAGGC.........................	20	1	4.00	4	1	0	1	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGACCTGCTCAGGGCGTC	22	1	4.00	4	0	0	4	0	0
.GTTTTCCTCTACAAAATCACCAAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	2	0	1	0
...............................AAAGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	1	1
...............................AAAGTGGCCAAGGAGTGGAC...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	2	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACCTGCTCAGGGCGT.	20	1	3.00	3	0	0	1	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGGACCTGCTCAGGGC...	21	1	3.00	3	0	1	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGGACCTGCTCAGGGC...	22	1	3.00	3	0	0	2	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGACCTGCTCAGGGC...	20	1	3.00	3	0	0	1	2	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAGGCC........................	22	1	3.00	3	0	1	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTATGAAGGACCTGCT.........	19	1	2.00	2	0	2	0	0	0
..................CACCAAGGGTGGCAAAGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGGACCTGCTCAGGGCGT.	24	1	2.00	2	0	1	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGGACCTGCTCAGGGCGTC	24	1	2.00	2	0	0	1	1	0
.............AAAATCACCAAGGGTGGCAAAGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CAGCTTTGGACTGCAAGAGC.................................	20	1	2.00	2	2	0	0	0	0
..........TACAAAATCACCAAGGGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGGACCTGCTCAGGGCGT.	23	1	2.00	2	0	0	1	1	0
.........CTACAAAATCACCAAGGGTGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGCCAAGGCCTATGAAGG................	23	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCGCCAAGGCCTATGAAGG................	28	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGGACTGCAAGAGCGCCAAGGC.........................	22	1	1.00	1	0	0	1	0	0
.......CTCTACAAAATCACCAAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................CCAAGGGTGGCAAAGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.................TCACCAAGGGTGGCAAAGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCCTATGAAGGAC..............	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGGACCTGCTCAGGGCGTC	19	1	1.00	1	0	0	0	1	0
.................................AGTGGCCAAGGAGTGGAC...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGAGCGCCAAGGCCTATGAAGG................	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCCTATGAAGGA...............	26	1	1.00	1	0	0	1	0	0
...TTTCCTCTACAAAATCACCAAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCCAAGGCCTATGAAGGACCTGCT.........	28	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTTTGGACTGCAAGAGCGCCAAGGC.........................	25	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAGGCCTA......................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTATGAAGGACCTGCTCAGGGCGT.	27	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACCTGCTCAGGGCGTC	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGACCTGCTCAGGGCGT.	22	1	1.00	1	0	0	0	1	0
....TTCCTCTACAAAATCACCAAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...............AATCACCAAGGGTGGCAAAGTGGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...................ACCAAGGGTGGCAAAGTGGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............AAATCACCAAGGGTGGCAAAGTGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGACCTGCTCAGGGC...	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................CACATATGCTTTGATCGGC------GG..........................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.........CTACAAAATCACCAAGGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................TGTTC-------TCTTACAGCTTTGGAC..........................................	21	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACCTGCTCAGGGC...	18	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGGACCTGCTCAG......	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCGCCAAGGCCTATGAAGGACCT............	28	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CCTATGAAGGACCTGCTCAGGGCGTC	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGAGCGCCAAGGCCT.......................	20	1	1.00	1	0	0	0	1	0
..........TACAAAATCACCAAGGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........TCTACAAAATCACCAAGGGTGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGCGCCAAGGCC........................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTGGACTGCAAGAGCGCCAAGGC.........................	23	1	1.00	1	0	0	1	0	0
................ATCACCAAGGGTGGCAAAGTGGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAAGGCCTATGAAGG................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGACCTGCTCAGGGCG..	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAGGC.........................	21	1	1.00	1	0	0	1	0	0
..........TACAAAATCACCAAGGGTGGCAAAGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
.........CTACAAAATCACCAAGGGTGGCAAAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGACCTGCTCAGGGCG..	20	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGGCCTATGAAGGAC..............	20	1	1.00	1	1	0	0	0	0
.........CTACAAAATCACCAAGGGTGGCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..........TACAAAATCACCAAGGGTGGCAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAAGGCCTATGAAGG................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAGCGCCAAGGCCTATGAA..................	24	1	1.00	1	0	0	1	0	0
.....................CAAGGGTGGCAAAGTGGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................TATT-----------TACCGCATATACACACA..............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................CAAAGTGGCCAAGGAGTGGAC...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGGACCTGCTCAGGGCGTC	25	1	1.00	1	0	1	0	0	0
..................CACCAAGGGTGGCAAAGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAA............................	18	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTATGAAGGACCTGCTCAGGGCGTC	28	1	1.00	1	0	0	1	0	0
........TCTACAAAATCACCAAGGGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGGCCTATGAAGGACC.............	21	1	1.00	1	0	0	0	1	0
...........ACAAAATCACCAAGGGTGGCAAAGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..........................GTGGCAAAGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGGACCTGCTCAGG.....	19	1	1.00	1	0	0	0	1	0

dp5

TGTGTTTGTCTATAAAATCACCAAGGATGGCAAGGTGGCCAAGGAATGGAGTAAGTAATA------ATATT--------------------------------ACGCACGATGCCTGATACTCCAACACACACACACACACACACCCATTTTCTGTGGGTTTACGTGGTCTTTTTT----------GCGTGTGTGTGTGTGTTTT----GTGGGAAGTTCAAAGTGCG---AAATTCTTTGCACTTCGGCACCAGCTGTTTGTTG------GT-TTTCTATGTG---------------GCCAACA----AATGTAAATTACATTACCTT-TTC-G---CTT-A---TTTTCTGTGTGT-----G--TTTTTTGTTCTAGCTCTGGACTGCAAGAGCGCCAAGGCCTATGAGGGACCCGCACAGGGCGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAGGGACCCGCACAGGGC...	22	1	3.00	3	0	1	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGCGCCAAGGC.........................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...............AATCACCAAGGATGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAGGC.........................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGCAAGAGCGCCAAGGC.........................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCCAAGGC.........................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTGTGT-----G--TTTTTTGTTCTAG..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCTATGAGGGACCCGCACAGGGC...	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...GTTTGTCTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAGGGACCCGCACAGGG....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TTGTCTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGGGACCCGCACAGGGC...	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................GCAAGGTGGCCAAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............AATCACCAAGGATGGCAAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................CACCAAGGATGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAGGGACCCGCACAG......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TTGTCTATAAAATCACCAAGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......TGTCTATAAAATCACCAAGGATGG................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTATGAGGGACCCGCACAGGGC...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GTGTTTGTCTATAAAATCACCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...GTTTGTCTATAAAATCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................ATGGCAAGGTGGCCAAGGAATGG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGCCAAGGCCTATGAGG.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GTCTATAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGGCCTATGAGGGACCCGC..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................GCAAGGTGGCCAAGGAATGGA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CAAGGATGGCAAGGTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGCAAGAGCGCCAAGGCC........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCCAAGGCCT.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............AAAATCACCAAGGATGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAGCGCCAAGGCCT.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GGATGGCAAGGTGGCCAAGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTGTGT-----G--TTTTTTGTTCTAGT.................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...GTTTGTCTATAAAATCACCAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCGCCAAGGCCTAT.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAGCGCCAAGGCCTATGAG..................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAG...........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCGCCAAGGCCTATG....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCTATGAGGGACCCGCACAG......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................ACCAAGGATGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.50	2	0	1	0	0	1	0	0	0	0	0
...........................................................................................................................................................................TTTTT----------GCGTGTGTGTGTGT......................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGTGTTTGTCTATAAAATCACCAAGGATGGCAAGGTGGCCAAGGAATGGAGTAAGTAATA------ATATT--------------------------------ACGCACGCTGCCT------------------GACACACACACTCATTTTCTGTGGGTTTACGTGGTCTTTTTT----------GCGTGTGTGTGTGTGTTTT----GTGGGAAGTTCAAAGTGCG---AAATTCTTTGCACTTCGGCACCAGCTGTTTGTTG------GT-TTTCTATGTG---------------GCCAACA----AATGTAAATTACATTACCTT-TTC-G---CTT-A---TTTTCTGTGTGT-----T--TT-TTTTTTCTAGCTCTGGACTGCAAGAGCGCCAAGGCCTATGAGGGACCCGCACAGGGCGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCC..............................	18	1	7.00	7	7	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCCAAGGC.........................	23	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCTATGAGGGACCC............	19	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTCTGGACTGCAAGAGCGCC..............................	20	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAGCGCCAAGGC.........................	21	1	2.00	2	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGCAAGAGCGC...............................	18	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAGGGACCCGCACAGG.....	20	1	2.00	2	0	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCCA.............................	19	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGACCCGCACAGGGCGTC	21	1	1.00	1	0	0	0	0	1	0
............TAAAATCACCAAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................CACCAAGGATGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCGCCAAGGCCTATGAGG.................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAGCGCCAAGGCC........................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCGCCAAGGCCTATGAGGGACC.............	27	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................CCTATGAGGGACCCGCACAG......	20	1	1.00	1	0	0	1	0	0	0
.....................CAAGGATGGCAAGGTGGCCAAGGAA................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................CTCTGGACTGCAAGAGCGCCAAGGC.........................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAGCGCCAAGGCC........................	24	1	1.00	1	1	0	0	0	0	0
..............AAATCACCAAGGATGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTTCTAGCTCTGGACTGCAAGA...................................	22	1	1.00	1	1	0	0	0	0	0
......................AAGGATGGCAAGGTGGCCAAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........CTATAAAATCACCAAGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................CAAGGTGGCCAAGGAATGG.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......TGTCTATAAAATCACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............AATCACCAAGGATGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..............................CAAGGTGGCCAAGGAATGGACC..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................CACCAAGGATGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................TTTT----------GCGTGTGTGTGTGTGT....................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1

droAna3

C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGGACTGCAAGAACGCCAAGGCGTACGAGGGACCCGCCCAGGGCGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGGACCCGCCCAGGGC...	22	1	9.00	9	2	6	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTACGAGGGACCCGCCCAGGGC...	28	1	6.00	6	0	2	0	0	3	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGGACCCGCCCAGGG....	21	1	4.00	4	2	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTACGAGGGACCCGCCCAGGGC...	23	1	3.00	3	0	1	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAAGAACGCCAAGGCGTACGAGG.................	23	1	3.00	3	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGGACCCGCCCAGGGC...	21	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGGCGTACGAGGGACC.............	21	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACGAGGGACCCGCCCAGGGC...	24	1	2.00	2	0	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAAGAACGCCAAGGC.........................	21	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGTACGAGGGACCCGCCCAGGGC...	27	1	2.00	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGGACCCGCCCAGGGCGT.	24	1	2.00	2	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTACGAGGGACCC............	19	1	2.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAGGCGTACGAGGGACC.............	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGCGTACGAGGGACCCGCCCAGGGC...	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAACGCCAAGGCGT.......................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTACGAGGGACCCGCCCAGGGCGT.	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTACGAGGGACCCGCCCAGGG....	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAGGCGTACGAGGGACCC............	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGGACCCGCCCAGG.....	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGGACCCGCCCAGGGCGTC	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGAACGCCAAGGCGTACGAG..................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTACGAGGGACCC............	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGGACTGCAAGAACGCCAAGG..........................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACTGCAAGAACGCCAAGGC.........................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGCAAGAACGCCAAGGC.........................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGTACGAGGGACCCGCC.........	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAACGCCAAGGCG........................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGACTGCAAGAACGCCAAGGCGTACG....................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGGCGTACGAGGGAC..............	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAACGCCAAGGCGTACGAGG.................	25	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGTACGAGGGACCCGCCCAG......	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGGACCCGCCCAGGG....	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGGACCCGCCCAGGGC...	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTACGAGGGACCCGCCCAGG.....	21	1	1.00	1	1	0	0	0	0	0

droBip1

AATAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------------CTA-AC---CTTAATA--------------TTAC-------TATTTCAGCTCTGGACTGCAAGAGCGCCAAGGCTTACGAGGGACCCGCCCAGGGCGTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTAATA------ATATT--------------------------------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCAAAACA-C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAA-----------------------------AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAAAA-CTA-AT---TT-AATA------------TCTCAC-------ATTTTTAGCTCTGGACTGCAAGAACGCCAAGGCCTACGAGGGACCCGCCCAGGGCGTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTGTTCCTCTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTAATTCGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCC-------ACTTTCAGCCCTGGACTGCAAGAGCGCCAAGGCCTACGAGGGACCCGCCCAGGGCGTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----C-ATAT------------ACACTA--TT-TAACTTTCAGCTCTCGACTGCAAGAACGCCAAGGCCTACGAGGGACCCGCCCAGGGCATC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGTGTTCCTGTACAAAATCACCAAGGACGGCAAAGTGGCCAAGGAGTGGAGTAAGTACGC----C--A---ATCAC-------TAATTGCGC-CCGTAAAAA-------------------------------------GCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTATCA----GTTA---TC---CATCGCCCAATGGAGC-CCATAAAAACACGCACC-------------------------ACACACACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........TACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................GGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	7.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................CCAAGGACGGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................AATGGAGC-CCATAAAAACAC.....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACAAAATCACCAAGGACGG................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAAATCACCAAGGACGG................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................GGCAAGGTGGCCAAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......CTGTACAAAATCACCAAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................AAGGTGGCCAAGGAGTGG.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACAAAATCACCAAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAAATCACCAAGGACGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TACAAAATCACCAAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........TACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACGGCAAGGTGGCCAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........GTACAAAATCACCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............AAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................ATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	2	2	0
................ATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	1	1	0
..................CACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	3.00	6	0	0	6	0
.....................CAAGGACGGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	1	0
.............AAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0
............CAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
...........ACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
...................ACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	18	3	1.33	4	0	0	4	0
.................TCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.............AAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.........................GACGGCAAGGTGGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
....................CCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
........TGTACAAAATCACCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.................TCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............AATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..................CACCAAGGACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................ACCAAGGACGGCAAGGTGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...............AATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........TGTACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...............................AAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............CAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.............................GCAAGGTGGCCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
....................CCAAGGACGGCAAGGTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................GACGGCAAGGTGGCCAAGGAG................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...............AATCACCAAGGACGGCAAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..................CACCAAGGACGGCAAGGTGGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...................ACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..................CACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	1

droYak3

TGTGTTCCTCTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........CTACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	22.00	22	0	1	0	2	0	0	19	0	0	0	0
................ATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	0	4	0	0	0	1	7	0	0	0	0
...............AATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	2	1	0	0	0	6	0	0	0	0
.........CTACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	1	2	0	0	0	3	0	0	0	0
.........CTACAAAATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	1	0	0	0	0	5	0	0	0	0
.........CTACAAAATCACCAAGGACGGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	1	0	0	0	0	2	0	0	0	3
...............................AAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	0	0	0	1	3	0	0	0	0
..............AAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	1	2	0	0	1	0	0	0	0	0
............CAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	1	0	0	3	0	0	0	0
.................TCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
..................CACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.........CTACAAAATCACCAAGGACG.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	1	1	0	0	0	2	0	0	0	0
.........................GACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
..........TACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	2	0	0	0	1	0	0	0	0
...............AATCACCAAGGACGGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................GACGGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.........................GACGGCAAGGTGGCCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................CAAGGACGGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........CTACAAAATCACCAAGGACGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.............AAAATCACCAAGGACGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..........TACAAAATCACCAAGGACGGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.............AAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................GGACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.............AAAATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................ACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GCAAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................CAAGGACGGCAAGGTGGCCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............AAAATCACCAAGGACGGCAAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GGCAAGGTGGCCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.GTGTTCCTCTACAAAATCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CAAAATCACCAAGGACGGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GTTCCTCTACAAAATCACCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................ACGGCAAGGTGGCCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AATCACCAAGGACGGCAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................CAAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................GCAAGGTGGCCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TCACCAAGGACGGCAAGGTGGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................ATCACCAAGGACGGCAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............AAAATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................AAGGACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CACCAAGGACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...GTTCCTCTACAAAATCACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AAATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................AGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TGTTCCTCTACAAAATCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AAATCACCAAGGACGGCAAGGTGGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...GTTCCTCTACAAAATCACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CACCAAGGACGGCAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..................CACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
..................CACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........GTACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0	0
.............................GCAAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............AAATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........TGTACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...................................TGGCCAAGGAGTGGAGTAAGT......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........ACAAAATCACCAAGGACGGCAAGGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.............AAAATCACCAAGGACGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................ACCAAGGACGGCAAGGTGGCCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
.........................GACGGCAAGGTGGCCAAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..............AAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.........GTACAAAATCACCAAGGACGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........ACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
..........TACAAAATCACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................ATCACCAAGGACGGCAAGGTGGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
......CCTGTACAAAATCACCAAGGACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
...............AATCACCAAGGACGGCAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...................ACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	1	0	0	0	1	0
..................CACCAAGGACGGCAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.67	2	1	1	0	0	0	0	0
..................CACCAAGGACGGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0

dvi_13588

scaffold_12970:8010629-8010792 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.3	-10.1	-9.8