ID:

dvi_13574

 Coordinate:

scaffold_12970:8002267-8002417 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ18778-cds]; exon [dvir_GLEANR_3601:7]; intron [Dvir\GJ18778-in]

Repeatable elements

NameClassFamilyStrand
(TTTTTG)nSimple_repeatSimple_repeat+
(TTTTA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCCGGCTAGGAAAGAAATTAATAGAGCCACTCACAAATCTAATTCATAGGCAAGTTTTTATCATTTAAAAAAAAAAAATAAAATAAAATAAAACAGAAACAAAAAATTACCCAAAAAACTGCATAAGTGCGCTCTCAGCTGTTCGATGATCGAAAGCTGATGTACAGCTAAACATTAAAAGAAAAAAACAAAAACAAAAACAAACACAAAAACAAAAACGAAACAAAAGCCAAACAAAACGCTTGTTAAG
**************************************************....((((((.((.(((((.........................(((......................))).....(((((...((((((.(((((...)))))))))))))))).........))))).)).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060661
160x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060683
160_testes_total
 SRR1106722
embryo_10-12h
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060663
160_0-2h_embryos_total
 SRR1106727
larvae
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
....................AATAGAGCCACTCACAAAT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................CTAGAGCCACTCACAAATCTAATTCATAG......................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................ATTAATAGAGCCACTCACAA...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAATAGAGCCACTCACAAATCT.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCGAAAGATGACGTATAG................................................................................... 19 3 14 0.36 5 0 0 0 0 2 0 1 0 0 1 1 0 0 0
...................................................................AAAAAAAAAAAATAAAATAAAAAAAAAAAGAGACAA.................................................................................................................................................... 36 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TTTTCATGATTTAAAAAAAAAAA............................................................................................................................................................................. 23 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGAAAGATGACGTACAGG.................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1
..............................................................................................................CCGAAAAACCTGCATTAGTGC........................................................................................................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................TAAAATAAAACAGAAAAAAAAA................................................................................................................................................. 22 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TTTGTCATCTAAAAAAAAAAAA............................................................................................................................................................................ 22 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................CGTAAGCTGATGTATAGG.................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGGGCCGATCCTTTCTTTAATTATCTCGGTGAGTGTTTAGATTAAGTATCCGTTCAAAAATAGTAAATTTTTTTTTTTTATTTTATTTTATTTTGTCTTTGTTTTTTAATGGGTTTTTTGACGTATTCACGCGAGAGTCGACAAGCTACTAGCTTTCGACTACATGTCGATTTGTAATTTTCTTTTTTTGTTTTTGTTTTTGTTTGTGTTTTTGTTTTTGCTTTGTTTTCGGTTTGTTTTGCGAACAATTC
**************************************************....((((((.((.(((((.........................(((......................))).....(((((...((((((.(((((...)))))))))))))))).........))))).)).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060678
9x140_testes_total
 V116
male body		 SRR060681
Argx9_testes_total
 V047
embryo
 SRR060680
 9xArg_testes_total
 M047
female body
 SRR060655
9x160_testes_total
.........................................................................................................................................................................ATTTGTAATTTTCTTTTT................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................ATCCGTTCAAAAATAGTAAATTTTTTT................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................CGGTGAGTGATTACATTTAGTA........................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CCATTGGTAATTTTCTTTTT................................................................ 20 2 12 0.33 4 0 0 0 1 1 0 1 0 1 0 0
..........................CGGTGAGAGTTTACATTTAGTA........................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................ATTGGTAATTTTCTTTTTTT.............................................................. 20 1 10 0.20 2 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................GATTGGTAATTTTCTTTTT................................................................ 19 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TTTGTTTGTTTTTGTTTTTGTTTGT............................................ 25 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CTTCTATTTTGTCTTTGTTTTTTC............................................................................................................................................... 24 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TTTGTTTTTGTTTTTGTTTGT............................................ 21 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCTTTGTTCACGGTTTGT.............. 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTCGTAATTTTCTTTTT................................................................ 18 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................TCTTTTTTTGTTTTTGTT..................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................ACCATTGGTAATTTTCTTTTT................................................................ 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................CTTTTTTTGTTTTTGTTTTTGTTTTT............................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:8002217-8002467 - dvi_13574 CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTT--TTA--TCATTTAA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-A-----AATAA--AATAA-A----------------------------------------------------------------------------------------------------ATAAAACAG-----------------------------------------------------------AAAC-----AAAAAATTACCCAAAAAACTGC-AT-------------AA-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC----TCTCAGCTGTTCGATGATCGAAAGCTGATGTA--------CAGCTAAACATTAAAAGAAAAAAACAAAAACAAAAACAAACACAAAAACAAA---AACGAA----------ACAAAAGCCAAACAAAACG---------------CTTGTTAAG
droMoj3 scaffold_6482:1528543-1528776 + CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTC--TTA--TAATTTAA--------------------CAA----AA------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------AACAAAAAACAAAA-----ACAA-AA----------------------------------------------A----------------------------------------------------------------------------------------------------------------------------AC------------------------------------TCTGGAA--------------------AGAC----G-------------------------------AA------------------------------------------------------------AACAAAAA---------------CGAAAA-----------------------------------------------CA-AAGAAGATCGAGAGCTGATCAT--------------------C--CATGCAAAATCATAACAAAGAAAAACAGAACAACAAACGA-----GAAAAAAGAAGAAAACA------TTTA--------ATATAATTTGCTTGTTTAA
droGri2 scaffold_15203:11069565-11069732 + CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTT--TTA--TCATTTA---------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC--------------------A-----ACAA-AA----------------------------------------------A----------------------------------------------------------------------------------------------------------------------------AA--------------------------------------TTGAAAACGATGGAA----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC----TCTCAGCTT-CTGATAATTGAAAGCTGATCCA--------------------T--------------------------TAAGTATATAAATTAA-----TACAAAAAT----------------------------------------AAAGA
droWil2 scf2_1100000004837:1607991-1608231 - TCAAAAA------GAACAA--CAACACAGACACACACACAC---TTAATTTATCATTCA------------------A--------------------CAA------------------------------------------------------------------------------AATCAGAAAATTTATATTTTTAAATACGA--GACTATTAAA---------GCAAAGAAATGAAAAACATA-------------------------------------------------------------------------------------------------AAAACAAACATGTA----------------------------------------------------------------------------------------ATGCGTAAAAAAAAATAAAATAAAAA-----AAACAAATTTTC------AATTTAATATTATATCAT-CAAA--AAAAAAAAAAAAAATTACAACA---------------------------------------------------------------AAAACA-----------------ATAAAAAAAA------AAATG---------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAA--------------------------------CCCAA
dp5 XL_group1e:6733858-6734099 - G--------------AAAT--TAATTAAACAAATA-CATATATTCAAATTCATGAAATAATGA--AAAA-TAATGACA--------------------AAA------------------ACAAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------C-----------------AACAAAA-----A-AAAA-AAA-------------------------------------------------CAAAAAAGAAACAACTAAA-----------------ATGAACCCAAAAACAATCTAGTTTTTATTGT-AATTCCG-TGTCTGTGTGTGTA-----------------------------------------------------TTTCA-GTAATTAATGTGAAAAACAAAAACAAAAAAAACCAAAGTCTAACA----------------------------------------ATA---ATAACAAGAG------------C----------AACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAACAA-------------------------AAC
droPer2 scaffold_18:115769-115937 - CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCTCTTAAT-TCATTCCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA-A-----AACAA--AA---------------------------------------------------------------A--------------AT------------------------------------------------------------------------------------------------------------------------------TAAAATTTAAAAATAT-ATATATGGAA--------------------AGGC----G-------------------------------AATGCAAACCAAAAAAAA---A----------------CAAAAAATAAA------AGAAG---------------------------AA-----------AGA----------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------AGATGAA
droAna3 scaffold_13117:2154400-2154605 - GAATA----------AAAT--GAACCAAAATGCAAGCAAAA---TTACTTACCATATATGTCT--AAAA-T-AT-GCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA-----AAA--------------------------------------------------------------------------------------------AA-----------------ATGCATCAAAA-ACAAATTTGAAATTCTCGATACACTTGCAGACAATGTGTAAAAACAAAGAAAGTATGAA-----AAGCTT--------------------------------GGA--AACAGAAACAAAGTCAAGAACA---------------------------------------------------------------AAAACA------------------AAAACAAACAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAA--------------------------CAAAA
droBip1 scf7180000396434:567267-567459 + TTAAAACAAAATAAGAAAA--AAAACGAA-----------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACGACCAAAAAAAACCCAAAAATAAAATAAAGCAG-----------------------------------------------------------ACGCAGA--------------------------------------------------------------------AGCCGAAGCCGAACATAATGTTAATGTTATGCTAAAATTAAACAAAAAACGATTTAAAACAAA---ACAAG------------C----------AACAAAACAAA--AACAAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------ACCTGTTTAAACTATACATATATAA
droKik1 scf7180000302592:1583985-1584175 - CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TGAATTCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACA-----AACAA--A-----A-----ACAAA-CAAA-------------------------------------------------CAAACAGAAAT-----TAA-----------------CTGAA--------------------------------------------------------------------------------------------------CGAAACCCC-AAAA-GTGTGTGGAAAACGATTGCA----------AAGC----G-------------------------------AA-------------------AATAG------------CAATTAATTAAAATGAA---------------------------------------------AAT-----AAGA----------------------------------------------------------------------------------------------------------------------------------------------CCGA------------------------ATA
droFic1 scf7180000454073:1344221-1344480 + CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTTT--TAAAACCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------AACAA--A------------------------------------------------------------------------------AAA-----GAA-----------------CTGAATTAAAA-AAAAAA----------------------------------------------------------------------------------ATGCGATTCCCC-GAAA-GTGTGTGGAAAACGATTGCAACAAAAAGCAAGGC----G-------------------------------AA------------------------------------------------------------CGCAAAGAA-------------TCGAAAG-----------CAAAATGAGACCGATTAATGGCCGATAACTATCGATCGATTGACAATTGA-AGCTGCTCGATGATTGTGCG----AAT--------------------------------AT--TAT-----------------------------------------------------------ATATTAG
droEle1 scf7180000491044:97526-97719 + CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCA-----AACAAAC-------------------AAA-------------------------------------------------CAAACAAAAAACGAATGAA-----------------CTGAACCTAAAA-----A----------------------------------------------------------------------------------ATACGATTTCCTCGAAT-GTGTGTGGAAAATGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAGAA-------------TCGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAA
droRho1 scf7180000779342:9425-9534 + CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--A------------------------------------------------------------------------------AAACGAATGAA-----------------CTGAACTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT
droBia1 scf7180000301506:186945-187133 - ATGCAAA---------------------------------------------------------------------------------------------A-----------GATACAAATAAAACAAAATAAG-----C------------------------------ACAGAGGAAAATCAAGAAAACCAGCTAGGGAAACCCGG--AGGAGCACAC---------AGACAGCAGTGGCAAGTGTC-------------------------------------------------------------------------------------------------AAAAACGAGATGAAAAGCGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---AGTGACGACACAAAAA--------------------------------------------------------------------------------------------------------------------------GCCA--------------------T--------------------------AAAGAGCAAGAAGCGA-----CACAAAAGCAGC---------AACAAAATG---------------TAAGACAAA
droTak1 scf7180000414562:536801-537000 + CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TGAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AA----AAACAA-A-----ACAA-AA----------------------------------------------A--------------AT-----TAA-----------------CGGA-----------------------------------------------------AAATACAATAAGA------------------------AATAC-ATGCGTTTTCCC-GAAA-GTGTGTGGAAAACGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAGAA-------------TCGAAATC---------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------TAATCAAAA
droEug1 scf7180000409456:547520-547720 - ATAAATCG-------------------AATAACACC-------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------AACTAAAAAAAAACCAAACCAC-----------------------------------------------------------AACCAGA-----------------A--------------------------------------------------AGTTGTATTCAAAGGAAGTCTCTCTCTTATGGCTAGCT---ACATAGTTCAGTTTAATACCAA---AGT------------------------------------------------------------------------------------------------------------------------------GACGACTGATCGA--------------------GTCAGCAAACAGCATTAACAAAAAAAAATAAAAAAGTGGC---CAAGAA----------AACAATGCCAAGCCAAAGA---------------GTTGCTTAG
dm3 chrX:13625344-13625631 - CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAAATCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--AACAA-AACAAAACAAAA-ATA-------------------------------------------------CAAATACAAATCAACTGAA-----------------CTGAACTGAAAA-----------------------------------------------------------------------TGTAA------AATACGATACGATTTCCC-AAGA-ATGTGTGGAAAACGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAAGAA------AAAA-TTCGAAATCAAATCGAAAGT-------GACCGATTAAAGGTCGA----TATCAATTGATCGATAATTGA-AGCTGCTCGATGA------------------------------------------------------------------------------------------------------------------TTGTG
droSim2 x:6187484-6187738 - ACCCGGAAAGGAATCTGAAATGA-----AACACT------G---TGACGCCC----------C--GAAAGCCACTGAAAATCGAAGTAATGCAGCTAAAAT-------------------------AAAA----------AGATAAA-------------ACTACGATCGATGGAGGAGATCCAACTAAACCTAATCCAGAATATGTAGC------GCGTAAACAGAGCACTAAGTAGTTGTATGTATTAA-------CTATTAATTTTTTAAATTAGCAAAAAAAAAAAACAAAA-------------------AAA-------------------------------------------------AAAACA------------A-----------------A------------------------------------------------------------------------ATAACAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------TCTAATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAAACAAA------------------------ATG
droSec2 scaffold_41:90195-90318 - TAAAAT-------------------AAAATAATTTAAG-----------------------------------------------------------------------------------------------------CAGATAAAATTAAGT----------------------------------------------------------------------------------TGCCGCATGGGTAACAGTGCGTTGATCAAATAATAAAAACATCAAAAAAAAA-AAAAA--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAA---AAAAAA-----AAGAGCTCAAA----------------------------------GCC
droYak3 X:7919364-7919590 - CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TTATTGCA--------------------AAA------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--AACGA-----------------------------------------------------------------------------------------AAATACAAATGAACTGAAGTAAAC-----------------------------------------------------------AAAAAAAAAAAAAAATTA------AATACGATACGATTTCCC-AAAAATTGTGTGGAAAACGATTGCAACACAAAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAAAAAAAAAAACTAAATTCGAAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAA
droEre2 scaffold_4690:8368762-8368986 + TTTAAAGG----------C--GAAT-------------------TTGGCCC--------------TCAA--------A--------------------CAATCAAAAACAACATGAAATG------------TTTACTGCAGGCGAAACAAAGCCGAAAAACTGCCTTA---------------AAGCTGTCTATTCCCCACCTTCCATC--------------------------------------------------------------------------------------------------GCAAA-CACACAAAGAGAAGTCACTCGGCCAAAACGTGTAAAAAAAATCAAAAAACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---AATAATAATACAAAAAACATAAAAAAGA------AGGCGAAAGAAAGCAA------ACTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTT--TTA--TCATTTAA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-A-----AATAA--AATAA-A----------------------------------------------------------------------------------------------------ATAAAACAG-----------------------------------------------------------AAAC-----AAAAAATTACCCAAAAAACTGC-AT-------------AA-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC----TCTCAGCTGTTCGATGATCGAAAGCTGATGTA--------CAGCTAAACATTAAAAGAAAAAAACAAAAACAAAAACAAACACAAAAACAAA---AACGAA----------ACAAAAGCCAAACAAAACG---------------CTTGTTAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................AATAGAGCCACTCACAAAT---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.................AT--TAATAGAGCCACTCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
.....................TAATAGAGCCACTCACAAAT---CT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTC--TTA--TAATTTAA--------------------CAA----AA------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------AACAAAAAACAAAA-----ACAA-AA----------------------------------------------A----------------------------------------------------------------------------------------------------------------------------AC------------------------------------TCTGGAA--------------------AGAC----G-------------------------------AA------------------------------------------------------------AACAAAAA---------------CGAAAA-----------------------------------------------CA-AAGAAGATCGAGAGCTGATCAT--------------------C--CATGCAAAATCATAACAAAGAAAAACAGAACAACAAACGA-----GAAAAAAGAAGAAAACA------TTTA--------ATATAATTTGCTTGTTTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCCCGGCTAGGAAAGAAAT--TAATAGAGCCACTCACAAAT---CTAATTCATAGGCAAGTTT--TTA--TCATTTA---------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC--------------------A-----ACAA-AA----------------------------------------------A----------------------------------------------------------------------------------------------------------------------------AA--------------------------------------TTGAAAACGATGGAA----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC----TCTCAGCTT-CTGATAATTGAAAGCTGATCCA--------------------T--------------------------TAAGTATATAAATTAA-----TACAAAAAT----------------------------------------AAAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCAAAAA------GAACAA--CAACACAGACACACACACAC---TTAATTTATCATTCA------------------A--------------------CAA------------------------------------------------------------------------------AATCAGAAAATTTATATTTTTAAATACGA--GACTATTAAA---------GCAAAGAAATGAAAAACATA-------------------------------------------------------------------------------------------------AAAACAAACATGTA----------------------------------------------------------------------------------------ATGCGTAAAAAAAAATAAAATAAAAA-----AAACAAATTTTC------AATTTAATATTATATCAT-CAAA--AAAAAAAAAAAAAATTACAACA---------------------------------------------------------------AAAACA-----------------ATAAAAAAAA------AAATG---------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAA--------------------------------CCCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................TTAAATACGA--GACTATTAAA---------GCAAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
...............................ACACACACAC---TTAATTTATCATTCA------------------A--------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------AAAACA-----------------ATAAAAAAAA------AAG...................................................................................................................................................................................................................................22200.05100010
dp5
G--------------AAAT--TAATTAAACAAATA-CATATATTCAAATTCATGAAATAATGA--AAAA-TAATGACA--------------------AAA------------------ACAAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------C-----------------AACAAAA-----A-AAAA-AAA-------------------------------------------------CAAAAAAGAAACAACTAAA-----------------ATGAACCCAAAAACAATCTAGTTTTTATTGT-AATTCCG-TGTCTGTGTGTGTA-----------------------------------------------------TTTCA-GTAATTAATGTGAAAAACAAAAACAAAAAAAACCAAAGTCTAACA----------------------------------------ATA---ATAACAAGAG------------C----------AACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAACAA-------------------------AACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................AAAA----------------------------------------------------------------------------------------------------------------------------------------------------C-----------------AACAAAA-----A-AAAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
droPer2
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCTCTTAAT-TCATTCCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA-A-----AACAA--AA---------------------------------------------------------------A--------------AT------------------------------------------------------------------------------------------------------------------------------TAAAATTTAAAAATAT-ATATATGGAA--------------------AGGC----G-------------------------------AATGCAAACCAAAAAAAA---A----------------CAAAAAATAAA------AGAAG---------------------------AA-----------AGA----------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------AGATGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GAATA----------AAAT--GAACCAAAATGCAAGCAAAA---TTACTTACCATATATGTCT--AAAA-T-AT-GCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA-----AAA--------------------------------------------------------------------------------------------AA-----------------ATGCATCAAAA-ACAAATTTGAAATTCTCGATACACTTGCAGACAATGTGTAAAAACAAAGAAAGTATGAA-----AAGCTT--------------------------------GGA--AACAGAAACAAAGTCAAGAACA---------------------------------------------------------------AAAACA------------------AAAACAAACAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAA--------------------------CAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAAACAAAGTCAAGAACA---------------------------------------------------------------AAAAC........................................................................................................................................................................................................................................................................2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGATACACTTGCAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--------------------------------GGA--AACAGAAACAAAGTCAAGA...............................................................................................................................................................................................................................................................................................................................................2511.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------GGA--AACAGAAACAAAGTCAAGAAC.............................................................................................................................................................................................................................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------AAAACAAACAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA..................................2040.251010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACA------------------AAAACAAACAAAAA.......................................................................................................................................................................................................................................2070.141010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AAAACA------------------AAAACAAACAAA.........................................................................................................................................................................................................................................19110.091010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------AAAACA------------------AAAACAAACC...........................................................................................................................................................................................................................................19200.051010000
droBip1
TTAAAACAAAATAAGAAAA--AAAACGAA-----------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACGACCAAAAAAAACCCAAAAATAAAATAAAGCAG-----------------------------------------------------------ACGCAGA--------------------------------------------------------------------AGCCGAAGCCGAACATAATGTTAATGTTATGCTAAAATTAAACAAAAAACGATTTAAAACAAA---ACAAG------------C----------AACAAAACAAA--AACAAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------ACCTGTTTAAACTATACATATATAASizeHit CountTotal NormTotal
No Reads
droKik1
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TGAATTCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACA-----AACAA--A-----A-----ACAAA-CAAA-------------------------------------------------CAAACAGAAAT-----TAA-----------------CTGAA--------------------------------------------------------------------------------------------------CGAAACCCC-AAAA-GTGTGTGGAAAACGATTGCA----------AAGC----G-------------------------------AA-------------------AATAG------------CAATTAATTAAAATGAA---------------------------------------------AAT-----AAGA----------------------------------------------------------------------------------------------------------------------------------------------CCGA------------------------ATASizeHit CountTotal NormTotal
No Reads
droFic1
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTTT--TAAAACCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------AACAA--A------------------------------------------------------------------------------AAA-----GAA-----------------CTGAATTAAAA-AAAAAA----------------------------------------------------------------------------------ATGCGATTCCCC-GAAA-GTGTGTGGAAAACGATTGCAACAAAAAGCAAGGC----G-------------------------------AA------------------------------------------------------------CGCAAAGAA-------------TCGAAAG-----------CAAAATGAGACCGATTAATGGCCGATAACTATCGATCGATTGACAATTGA-AGCTGCTCGATGATTGTGCG----AAT--------------------------------AT--TAT-----------------------------------------------------------ATATTAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCA-----AACAAAC-------------------AAA-------------------------------------------------CAAACAAAAAACGAATGAA-----------------CTGAACCTAAAA-----A----------------------------------------------------------------------------------ATACGATTTCCTCGAAT-GTGTGTGGAAAATGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAGAA-------------TCGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAASizeHit CountTotal NormTotal
No Reads
droRho1
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--A------------------------------------------------------------------------------AAACGAATGAA-----------------CTGAACTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATSizeHit CountTotal NormTotal
No Reads
droBia1
ATGCAAA---------------------------------------------------------------------------------------------A-----------GATACAAATAAAACAAAATAAG-----C------------------------------ACAGAGGAAAATCAAGAAAACCAGCTAGGGAAACCCGG--AGGAGCACAC---------AGACAGCAGTGGCAAGTGTC-------------------------------------------------------------------------------------------------AAAAACGAGATGAAAAGCGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---AGTGACGACACAAAAA--------------------------------------------------------------------------------------------------------------------------GCCA--------------------T--------------------------AAAGAGCAAGAAGCGA-----CACAAAAGCAGC---------AACAAAATG---------------TAAGACAAASizeHit CountTotal NormTotal
No Reads
droTak1
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TGAA-TCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AA----AAACAA-A-----ACAA-AA----------------------------------------------A--------------AT-----TAA-----------------CGGA-----------------------------------------------------AAATACAATAAGA------------------------AATAC-ATGCGTTTTCCC-GAAA-GTGTGTGGAAAACGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAGAA-------------TCGAAATC---------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------TAATCAAAASizeHit CountTotal NormTotal
No Reads
droEug1
ATAAATCG-------------------AATAACACC-------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------AACTAAAAAAAAACCAAACCAC-----------------------------------------------------------AACCAGA-----------------A--------------------------------------------------AGTTGTATTCAAAGGAAGTCTCTCTCTTATGGCTAGCT---ACATAGTTCAGTTTAATACCAA---AGT------------------------------------------------------------------------------------------------------------------------------GACGACTGATCGA--------------------GTCAGCAAACAGCATTAACAAAAAAAAATAAAAAAGTGGC---CAAGAA----------AACAATGCCAAGCCAAAGA---------------GTTGCTTAGSizeHit CountTotal NormTotal
No Reads
dm3
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAAATCATTGCA--------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--AACAA-AACAAAACAAAA-ATA-------------------------------------------------CAAATACAAATCAACTGAA-----------------CTGAACTGAAAA-----------------------------------------------------------------------TGTAA------AATACGATACGATTTCCC-AAGA-ATGTGTGGAAAACGATTGCAACA--AAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAAGAA------AAAA-TTCGAAATCAAATCGAAAGT-------GACCGATTAAAGGTCGA----TATCAATTGATCGATAATTGA-AGCTGCTCGATGA------------------------------------------------------------------------------------------------------------------TTGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......TAGGAAAGAAAT--TAATAGAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CTAGGAAAGAAAT--TAATAGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAGAAAT--TAATAGAACCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC----G-------------------------------AA------------------------------------------------------------AGCAAAAGAA------AAAA-TTCGAAAT..................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CACTCACAAAT---CTAATTCATAGGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TAATAGAACCACTCACAAAT---CTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AAT--TAATAGAACCACTCACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCGATAATTGA-AGCTGC..............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATAATTGA-AGCTGCTCG...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
CCCCGGCTAGGAAAGAAAT--TAATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----TATCAATTGATCGATAATTGA-AGC.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCC-AAGA-ATGTGTGGAAAACGAT...................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------TGTAA------AATACGATACGATT.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAGA-ATGTGTGGAAAAC......................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTCGAAATCAAATCGAAAGT-------GACCGAT........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TACAAATCAACTGAA-----------------CTGAACTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGA-AGCTGCTCGATGA------------------------------------------------------------------------------------------------------------------TTGT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......TAGGAAAGAAAT--TAATAGAACCACTCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......TAGGAAAGAAAT--TAATAGAACCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAAA-----------------------------------------------------------------------TGTAA------AATACGATACGATT.............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCGGCTAGGAAAGAAAT--TAATAGAACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCCGGCTAGGAAAGAAAT--TAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------TGTAA------AATACGATACGATTT............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAGAAAT--TAATAGAACCACTCACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AGCTGCTCGATGA------------------------------------------------------------------------------------------------------------------TTGT.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................AACTGAA-----------------CTGAACTGAAAA-----------------------------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACCCGGAAAGGAATCTGAAATGA-----AACACT------G---TGACGCCC----------C--GAAAGCCACTGAAAATCGAAGTAATGCAGCTAAAAT-------------------------AAAA----------AGATAAA-------------ACTACGATCGATGGAGGAGATCCAACTAAACCTAATCCAGAATATGTAGC------GCGTAAACAGAGCACTAAGTAGTTGTATGTATTAA-------CTATTAATTTTTTAAATTAGCAAAAAAAAAAAACAAAA-------------------AAA-------------------------------------------------AAAACA------------A-----------------A------------------------------------------------------------------------ATAACAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------TCTAATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAAACAAA------------------------ATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................TCCAGAATATGTAGC------GCGTAAACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
...............TGAAATGA-----AACACT------G---TGACGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
.....................................................................GCCACTGAAAATCGAAGTAATGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.............TCTGAAATGA-----AACACT------G---TGACGCCC----------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
................................................................................................................................................................ACTACGATCGATGGAGGAGATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
..........................................................................TGAAAATCGAAGTAATGCAGCTAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
...................................................................................................................................................................................................................................................................TATTAATTTTTTAAATTAGCAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.............TCTGAAATGA-----AACACT------G---TGACGCCC----------C--GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
....................................................................................................................................................................CGATCGATGGAGGAGATCCAACTAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
....................TGA-----AACACT------G---TGACGCCC----------C--GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...................................................................................................................................................................................................TCCAGAATATGTAGC------GCGTAAACAGAGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
...............................................................................................................................................TAAA-------------ACTACGATCGATGGAGGAGATCCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.......................................................................................................................................................................................................................................................................................AAAAAAAAAAAACAAAA-------------------AAA-------------------------------------------------AAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05100000000000001000
..........................................................................................................................................................................................................................................................................................AAAAAAAAACAAAA-------------------AAA-------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000000001000
..........................................................................................................................................................................................................................................................................................AAAAAAAAACAAAA-------------------AAA-------------------------------------------------AAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000001000
..........................................................................................................................................................................................................................................................................................AAAAAAAAACAAAA-------------------AAA-------------------------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000001000
droSec2
TAAAAT-------------------AAAATAATTTAAG-----------------------------------------------------------------------------------------------------CAGATAAAATTAAGT----------------------------------------------------------------------------------TGCCGCATGGGTAACAGTGCGTTGATCAAATAATAAAAACATCAAAAAAAAA-AAAAA--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAA---AAAAAA-----AAGAGCTCAAA----------------------------------GCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................AAATTAAGT----------------------------------------------------------------------------------TGCCGCATGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1022000
..................................................................................................................................................................................................................................................ATGGGTAACAGTGCGTTGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020002
.................................................................................................................................................................................................................................................CATGGGTAACAGTGCGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020002
.........................................................................................................................................................T----------------------------------------------------------------------------------TGCCGCATGGGTAACAGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
.......................................................................................................................................................................................................................................................TAACAGTGCGTTGATCAAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
..................................................................................................................................................AATTAAGT----------------------------------------------------------------------------------TGCCGCATGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
.....................................................................................................................................................................................................................................................................................TCAAAAAAAAA-AAAAA--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAA...............................................................28200.0511000
droYak3
CCCCGGCTAGGAAAGAAAT--TAATAGAACCACTCACAAAT---CTAATTCATAGGCAAGTCT--TAAA-TTATTGCA--------------------AAA------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA-----AACAA--AACGA-----------------------------------------------------------------------------------------AAATACAAATGAACTGAAGTAAAC-----------------------------------------------------------AAAAAAAAAAAAAAATTA------AATACGATACGATTTCCC-AAAAATTGTGTGGAAAACGATTGCAACACAAAGCAAGGC----G-------------------------------AA------------------------------------------------------------AGCAAAAAAAAAAAAACTAAATTCGAAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTTAAAGG----------C--GAAT-------------------TTGGCCC--------------TCAA--------A--------------------CAATCAAAAACAACATGAAATG------------TTTACTGCAGGCGAAACAAAGCCGAAAAACTGCCTTA---------------AAGCTGTCTATTCCCCACCTTCCATC--------------------------------------------------------------------------------------------------GCAAA-CACACAAAGAGAAGTCACTCGGCCAAAACGTGTAAAAAAAATCAAAAAACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---AATAATAATACAAAAAACATAAAAAAGA------AGGCGAAAGAAAGCAA------ACTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 06:04 PM