ID:

dvi_13561

 Coordinate:

scaffold_12970:7945919-7946069 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_3606:11]; CDS [Dvir\GJ18783-cds]; intron [Dvir\GJ18783-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACAATTTGGCGCGATTTATTAACTTTCTACATGATAAATCGGAATTGGTGTAAGTAAGGCGCAAAGTCAATACATGTACACGGTTTAACATTTAAAATCCATTTTTTATACCCTAAACCCATTAAAAATGAGTATTTGTGCAAATGTATACAACAGGCAGAAGGAATCTACGACCCCATAAAGTGTATAAATTCCTAATCAGCATCATCAGTCGAGTCATGTCCGTCCGTCTGTCTGTCCGTCCGTATGT
**************************************************........(((.....))).(((((((((((.((((((.....(((((......))))).....))))))((((...))))......))))))..)))))............((((((.(((.((........)))))...))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060671
9x160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR1106728
larvae
..........................................................................ATGTACAGGGTTTCACCTTT............................................................................................................................................................. 20 3 13 0.15 2 1 1 0 0 0
........................................................................................................................................................................................................CAGCATCATCTGTCCAGT................................. 18 2 13 0.08 1 0 0 1 0 0
.........................TTCTACATGATACACCAGA............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.......................................................................................................................................................................................................................AGTCATGGCCGTACGGCTG................. 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CTGTTAAACCGCGCTAAATAATTGAAAGATGTACTATTTAGCCTTAACCACATTCATTCCGCGTTTCAGTTATGTACATGTGCCAAATTGTAAATTTTAGGTAAAAAATATGGGATTTGGGTAATTTTTACTCATAAACACGTTTACATATGTTGTCCGTCTTCCTTAGATGCTGGGGTATTTCACATATTTAAGGATTAGTCGTAGTAGTCAGCTCAGTACAGGCAGGCAGACAGACAGGCAGGCATACA
**************************************************........(((.....))).(((((((((((.((((((.....(((((......))))).....))))))((((...))))......))))))..)))))............((((((.(((.((........)))))...))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 V116
male body		 SRR060679
140x9_testes_total
 M027
male body		 SRR060672
9x160_females_carcasses_total
 M047
female body
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
..............................................................................................................................................................................GGGGTATTTCACATATTTAAGGATT.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTCACATATTTAAGGATTAGTCGTA............................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTGTAGTAGTCAGGTCAG................................ 19 2 7 0.71 5 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTGTAGTAGTCAGGTCAGT............................... 20 2 3 0.67 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTTGTAGTAGTCAGGTCAGT............................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTTGTAGTAGTCAGGTCAG................................ 20 2 6 0.33 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGTAGTAGTCAGGTCAG................................ 18 2 9 0.33 3 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTAGTAGTCAGGTCAGT............................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTACAAGCAGGCAGACAGACA............ 21 1 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0
...............................................................................................TTTAGGTAAAAAAAATAGGACTT..................................................................................................................................... 23 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTTGTAGTAGTCAGGTCAGTC.............................. 22 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TATTTGTAGTAGTCAGGTCAG................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........CTCGATGAATAATTGAAAGAT............................................................................................................................................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................GTACAGGCAGGCAGACAG............... 18 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGTTGTAGTAGTCAGGTCAG................................ 21 3 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AGTTGTAGTAGTCAGGTC.................................. 18 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTACCAGCAGGCAGACAGACA............ 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................AAAAATATGGGATTTGGGTA................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACAGGCACGCAGACAGACAG........... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................AAGTTGTAGTAGTCAGGTCA................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:7945869-7946119 - dvi_13561 GACAATTT---G-GC----------GC---GATTTATTAAC--TTTCTAC-----------------------------ATGATAAATCGGAATT--------------------------------------------------------------------G-------------GTGTAAG--TAAGGC-----------------------------------GCAA--------AGT--------------------------CAATACATGTACAC-------G------------------------GTTTAA---------C-----------ATTTAA-AAT------------------------------CCAT---------------------------TTTTTATACCC--TAAACCCATTAAA-----------AATGAGT-------ATTTGTGCAAATGTATACAACA-GGCAGAAGGAA----TCTACGACCCCATAAAGTGTATAAATTCCTAATCAGCATCATCAGTCG---AGTC---------ATGTCCGTCCGTCTGTCTGTCCGTCCGTATGT
droMoj3 scaffold_6541:1828519-1828782 - AACAGTTA---T-TT----------GCGA--------------------------------GCTATG----------------------GAAATC--------ATAGTAATACGACGTTTC-----------------------------------------------------------------------------------------------------------ATT--------AAAAAGCTGGTTTA-----------AATTTACTAAACCTCTAA-------G-------------------------T-----------------------------------T---------------------------TGATAT---------------------------TTTTTATACCC--TGAACCCATTGAAAATGG--GAAATCAGGGTATAATGGTTTTG-TGAAAAGTATGTAACA-GGCAGAAGGAA-TCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTG---AGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGTCCGT
droGri2 scaffold_14822:674150-674384 + ATT------T-------------------------ATTAAT--TTAC-----------------------------TG----------------------------------------------------------------------------------------TCGATTAATTTGTTTAAA--TAAAAT-----------------------------------ACAA-----------------ATTTAGCA-----------------C----------------TT-------------------------------------T-----------ATTTAA----T---------------------------TGTTTC---------------------------TTTTTATACCCATTGAACCCATTACAAAT--G-GTTAAAAGGGTATAATGGTTTTGTGCAAATGTATATAACA-GGCAGAAGGAC-GCATCTCCGACCCTATGAAGTAAATATATTCTTGATCAGGGTCTACAACCGATAAGTCGATATAGCC--------------GTCTGTCCGTTTCTCTGT
droWil2 scf2_1100000001379:383-623 + GACAATTG---G--T----A-----T----TAGT-------TT--T--TAGAGTATT------------------CTA----------------------------------------------------------------------------------------TTGATTATCTTTTGAAAG--GAAA-----------------------------------ATCT---AA--------------ATATTTAG---TT-TC--------------------------ATTT-------------------------------------------------T-------T---------------------------TATTAG---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATTATATAATTGGTCAGATGTTTGTAACG-CACAGAAGGAG-ACGTTTACGACCCCATAAAGTATATATATTCTTTATCAGCATGAGAAGCTG---AGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGT
dp5 XR_group6:13246610-13246843 - CAC------TTGGGCGGGTATTAAT----------------TA--T--GAC-------------------AAATC----------------------------------------------ATGCAAAGC-------------AA-A------------------------------------------------------------------------------AG-CA--AAGCCAAAGC---C--AAAACTAA---TT-TC--------------------------ATT-----------------------------------------------A--AA---AAACCA---------------------------TCAT---------------------------TTTTTGCGCCC--GGTGCTCAAAAAGAGTGC------AAGGGGCATATTCGATTTGT------GTGTGTAAGA-CCCAGAAGGAA-GTGTTTCCGACCCCATAATGTGTATATATTCTTGATCAGCATCAATAGTCG---AGTCCATTGAGCCATGTCTGTCTGTTCG-----------------
droPer2 scaffold_250:9711-9943 - CAC------TTGGGCGGGTATTAAT----------------TA--T--GAC-------------------AAATC----------------------------------------------ATGCAAAGC-------------AA-A------------------------------------------------------------------------------AG-CA--AAGCCAAAGC---C--AAAACTAA---TT-TC--------------------------ATT-----------------------------------------------A--AA---AAACCA---------------------------TCAT---------------------------TTTTTGCGCCC--GGTACTCAAAAAGAGTGC------AAGGGGCATATTCGATTTGT------GTGTGTAAGA-CCCAGAAGGAA-GCGTTTCCGACCCCATAATGTGTATATATTCTTGATCAGCATCAATAGTCG---AGTCCATTGAGCCATGTCTGTCTGTTC------------------
droAna3 scaffold_13339:3878381-3878638 + ATT------T-------------------------ATTTAT--TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTGAATTG-------------TTTTGGGTT--AAAC-----------------------------------TGAA-----------------------------------------------------------ATT-----------------------------------------------G--AA---ATGCAGTTGTTCTATTCGGCCGCTTTTAAAATATACT---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTG---AGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGT
droBip1 scf7180000396574:432667-432921 - TAAT--TTAT-C--T----------GTCGG--C----------TTT-----------CTTAAA-----------------------CTCGAAATC--------------------------CTTCTAGAC-------------A---------------------------------------G---------------------------------------------------------T--------------------------TAA-ACATACATAA--GT---------------------------------------------------------------TAAAA---------------------------ACTAAATTTGGCTTTAAATTTTAAATTCATATTTTTATACCCTT----------------GC------AGAGGGTATTATAATTTTGTCCAAAAGTGTGCAACG-CAAGGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTG---AGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTCTGTCTGT
droKik1 scf7180000299541:14208-14475 - CAA--TTT---------------------------GTTTCC--TTTTGTA-------AATAAG-----------------------ATCTGATTT--------------------------------------------------------------------C-------------ATATAAA--AAAGGC--------GA--------------------------CA----------AT--------------------------CAA-ACATGAACAT--TTTGG----CCATGTCTAAAGCACATTTTATTAGGT---------GCTTATA-------------------------------------------CACACG---------------------------TTTTTATACCCTT------------------------GCAGGGTATTATAATTTCAGTCAGAAGTTTGCAACG-CAGTGAAGGAG-ACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGTCG---AGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGT
droFic1 scf7180000453831:608439-608692 - GAT---TC---------------------------ATCTAC--CTTTTTC-------CTGAAA-----------------------TTCGGTCTT--------------------------------------------------------------------T-------------ATTTAGG--CAAAAA------GGAAT-------------------------------------TT--------------------------TACTACATGGATAC-------GTT-CCA---------------------------------T-----------ATTTAAATAATT----------------------------TTAA---------------------------TTTTTATACCCTT-------GC---------AGAGC-AAAGGGTATTATAATTTCAGTCAGAAGTTTACAACG-CAGTGAAGGAG-ACACCTCAAACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTG---AATCGAAATATGTATGTACGTCTGTCCGTCTGTCCGTCTGTCTGT
droEle1 scf7180000490996:301072-301327 + TCT--------GG-C----------AT---AACTTGTTAAC--CTTTATT-------TTGAAG-----------------------CTCA--ATT----------------------------------------------------------------------------------GTGTGAGTT--TAGCAAACAATCAAGTTTATTAGCTTGACTAAGCACTCTGT---AT--------------A--------------------------------------------------------------------------------C-----------ATTTAA----G---------------------------TATTAA---------------------------TCTTTATACCCTT----------------GC------AGAGGGTATTATAATTTCAGTCAGAAGTTTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCG---AGTCGATCTAGCCATGTCCGTCTGTCCG--------TCCGTTTAT
droRho1 scf7180000763916:10516-10790 + GGCAGGTA---A-GCGCGTTTTATAT----TCAA---------TTT--TTGGGTGTC------------------CC-------------------------------------------------------------------------------------------------------------------------------------------------------ATT--------TCAAAGTCGG--------------------------TGTACACGATCCTG----CAAAATCTATCGGACGGATCGTTTTGA---------GATTTTG-------------------------------------------C-ACAG---------------------------TATTTATACCC--GTTACTCGT---------AGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACA-GCTAGAAGGAA-GCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCG---AGTCGATATAGCCATGTCCGTCTGTCTGTCTGTCCGTCTGTCTGT
droBia1 scf7180000297969:184-420 - ATT------TAGAAC-AATATAATA----------------AA--T--AAT-------------------AAATT----------------------------------------------ATATATTGA-------------TATAT-----------------------------G-------------C-----------------------------------TTA--AAATTAATAA---T--AAGATAAA---AT-AT--------------------------TTT-----------------------------------------------A-TGA----GAAAA---------------------------ACTA---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATAATGATTTCAGTCAGAAGTTTGCAACG-CTGTGAAGGAG-ACGTTTCCGAACCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACG---AGTCGATCTAGCCATGCCCGTCTGTCCG--------TCCGTTTCT
droTak1 scf7180000415866:105425-105700 - TT---------GA-G----------GC---AACTTTCATAT--TT-CAACA------GCAAAA-----------------------AACAGAATA------CCATTAC----AAAATATAA-----------------------------------------------------------------------------------------------------------GT-A-------------------TA---CAAGTA--AAAACAATATATGTATAT--------------------------------TTTTAA---------AATAAT-ATTTC-TTA------AG----------------------------GTGA---------------------------TTTTTATATCC--GTTACTCGT---------AGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACA-GCTAGAAGGAA-GCATTTCTGACCCTATAAAGTATATATATTCTTGATTAGGGCCACTAGCCG---AGTCGATATAGCCATGTCCGTCTGTCCGTCTGT----CTGTCCGT
droEug1 scf7180000409484:1126-1379 - GACAAAAG---G-TG----------GC---GCTTTGTGAAT--TTTCAAT-------AGGAAA-----------------------ATGAAAAAT-------------------------CATATAAAGT-------------A----------------------------------------------------------------------------------G-TT--ACGGTTATCC---T--ATTACTTA---TT-T---------------------------------------------------------------------------------------ACT----------------------------ATCA---------------------------TTATTATACCC--GTTATTCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACA-GGTAGAAGGAA-GCGTTTCCGACCGTATAAAGTTTATACATTCTTGATTAGGATGAATAGCGA---AGACGAATGAGCCAAGTCCGTCTGTCTGT----TCGTCTGTCCGT
dm3 chr2L:21715717-21715940 + TTCATT---------------------------------AT--TCG--AA-----------------------------ATAATGAA-----------------------------------------------------------------------------------TTGGCCGGTGTGGGTG--GCGC-----------------------------------AAAA-----------------ATACGTCACTAT-----ATA-------------------------C-------------------------------------------------T-------A---------------------------TATATA---------------------------TGTTTATACCC--GTTACTCGT---------GGAGTAAAAGGGTACAATAGATTCGTTGAAAAGTATGTAACA-TGCAAAGGGAA-GCGTTTCCGACCATATAAAGTATATATATTCTTGATCTGGATCAATAGCCG---CGTCGATCTAGCCATGTCCGTCTGTCCTTTT--------------
droSim2 3r:283661-283877 - TCT------C----T----------GCGA--------------------------------GAAATGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------AATTAAGTGCATAC--------------------------------------TGCCTTGAA-----------------------------------------------------AAA---------------------------TTTTTAAAGTC--GGAACCCGT---------AGAGT---------------ATTCGTTGATAAGAATGCAACA-GATAGAAGGAA-GCGCATCCGATCCTGTACAGTATATATATTCTTGGTCAGGACCACATGCCG---AGACGATCTAGCCATGTCCATCTCTCTGTCCGTCTGTCCGTCCGT
droSec2 scaffold_8:3448966-3449216 - ATT------T-------------------------ATT----A--T--GAA------------------TATATAGTAC----------------------------------------------ACAGAATTTGATGTATTTAATATGCCAGGCACAATATTGTATCGAT-----------------------------------------------------------------------------TGAGTGGA---AA-GA--------------------------TTT-----------------------------------------------C-TAA---AAACG----------------------------GCCA---------------------------TTTTTATACCC--GTTAATCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAGGGTATGTAACAAGGCAGAAGGAAGGCGTTTCCAACTATATAAAGTATATAAGCTCTTGATCAGGATCAATAGCCG---AGTCGATCTAGCCATGTCCGTCTGTTCG----------------T
droYak3 v2_chrUn_3539:564-818 + TT---------GG-T----------GT---AAGATTTTAAT--TTTT--T-------AGGAGA-----------------------TTCGGAATTTGTGCATCATAGT----CGACTATAT-----------------------------------------------------------------------------------------------------------AT-T-------------------TA---CAATTT--AATTCAATAAATG----------------------------------------------------------------------------------------------------------TC---------------------------TCATTATACCC--GTTACTCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACA-GGCAGAAGGAA-GCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCG---AGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCGT
droEre2 scaffold_4929:21751015-21751249 + AGT------TTGG-A----------TT---AACTTCCAAAC--TTTCAGC---------GAGA-----------------------GAGAGAGTT----------------------------------------------------------------------------------GCAGTAA--TAAAAT-----------------------------------A----------------------------CAAT-----AAACAATAAATGAATGT--------------------------------------TGCGTCCAA-----------------------------------------------------GAA---------------------------CGGTTATACCC--GTTACTCGT---------AGAGTAAAAGGGTAC--TAGATTCATTGAAAAGTATGTAACA-A---GAATG-T-ATGTATGTAACCATATAAAGTATATATATTCTTGATCAGGATCAATATCCG---AGTCGAACTGGCCATGTCCGTCTGTCCG----------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GACAATTT---G-GC----------GC---GATTTATTAAC--TTTCTAC-----------------------------ATGATAAATCGGAATT--------------------------------------------------------------------G-------------GTGTAAG--TAAGGC-----------------------------------GCAA--------AGT--------------------------CAATACATGTACAC-------G------------------------GTTTAA---------C-----------ATTTAA-AAT------------------------------CCAT---------------------------TTTTTATACCC--TAAACCCATTAAA-----------AATGAGT-------ATTTGTGCAAATGTATACAACA-GGCAGAAGGAA----TCTACGACCCCATAAAGTGTATAAATTCCTAATCAGCATCATCAGTCG---AGTC---------ATGTCCGTCCGTCTGTCTGTCCGTCCGTATGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AACAGTTA---T-TT----------GCGA--------------------------------GCTATG----------------------GAAATC--------ATAGTAATACGACGTTTC-----------------------------------------------------------------------------------------------------------ATT--------AAAAAGCTGGTTTA-----------AATTTACTAAACCTCTAA-------G-------------------------T-----------------------------------T---------------------------TGATAT---------------------------TTTTTATACCC--TGAACCCATTGAAAATGG--GAAATCAGGGTATAATGGTTTTG-TGAAAAGTATGTAACA-GGCAGAAGGAA-TCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTG---AGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAA-TCATCGCAGACCCCAT...................................................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCCGTCTGTCCGTC...............18200.051000010
droGri2
ATT------T-------------------------ATTAAT--TTAC-----------------------------TG----------------------------------------------------------------------------------------TCGATTAATTTGTTTAAA--TAAAAT-----------------------------------ACAA-----------------ATTTAGCA-----------------C----------------TT-------------------------------------T-----------ATTTAA----T---------------------------TGTTTC---------------------------TTTTTATACCCATTGAACCCATTACAAAT--G-GTTAAAAGGGTATAATGGTTTTGTGCAAATGTATATAACA-GGCAGAAGGAC-GCATCTCCGACCCTATGAAGTAAATATATTCTTGATCAGGGTCTACAACCGATAAGTCGATATAGCC--------------GTCTGTCCGTTTCTCTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GACAATTG---G--T----A-----T----TAGT-------TT--T--TAGAGTATT------------------CTA----------------------------------------------------------------------------------------TTGATTATCTTTTGAAAG--GAAA-----------------------------------ATCT---AA--------------ATATTTAG---TT-TC--------------------------ATTT-------------------------------------------------T-------T---------------------------TATTAG---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATTATATAATTGGTCAGATGTTTGTAACG-CACAGAAGGAG-ACGTTTACGACCCCATAAAGTATATATATTCTTTATCAGCATGAGAAGCTG---AGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACG-CACAGAAGGAG-ACGTTT.............................................................................................25200.9018001800
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACG-CACAGAAGGAG-ACGTTTA............................................................................................2650.40201100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACG-CACAGAAGGAG-ACGTTTA............................................................................................2550.20100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-CACAGAAGGAG-ACGTTTACGACC.......................................................................................2570.14100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG---AGTTGATATAGCCATGTCC..........................24200.10200020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATCAGCATGAGAAGCTG---AG...........................................24120.08100010
..............................................................................................................................................................................................................................................................................................................................................................................................TAG---------------------------TTTTTATACCCTT----------------GC------AGAGG...............................................................................................................................................23130.08101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATGTTTGTAACG-CAC............................................................................................................20200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---AGTTGATATAGCCATGTCCGTCTGTC...................28200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATAGCCATGTCCGTCTGTC...................25200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATAGCCATGTCC..........................18200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATAAAGTATATATATTCT...................................................................21200.05110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCTGTCCGTCCGT....27200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATGAGAAGCTG---AGTTGATATAG..................................26200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCTGTCCGTCTGTC...........25200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTCTG.............21200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGCTG---AGTTGATATAGCCATGT............................27200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGCTG---AGTTGATATAG..................................25200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCTGTCCGTCTGT............24200.05100010
dp5
CAC------TTGGGCGGGTATTAAT----------------TA--T--GAC-------------------AAATC----------------------------------------------ATGCAAAGC-------------AA-A------------------------------------------------------------------------------AG-CA--AAGCCAAAGC---C--AAAACTAA---TT-TC--------------------------ATT-----------------------------------------------A--AA---AAACCA---------------------------TCAT---------------------------TTTTTGCGCCC--GGTGCTCAAAAAGAGTGC------AAGGGGCATATTCGATTTGT------GTGTGTAAGA-CCCAGAAGGAA-GTGTTTCCGACCCCATAATGTGTATATATTCTTGATCAGCATCAATAGTCG---AGTCCATTGAGCCATGTCTGTCTGTTCG-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AGTCC........................................2521.5030300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AGT..........................................23201.202402300000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AGTCCA.......................................2621.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AG...........................................22200.3060000000420
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTCTTGATCAGC...........................................................21200.1530000000030
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGTCG---AGTC.........................................21200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTGAGCCATGTCTT.........................1980.1310100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTGTT...................2090.1110100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGTCG---AG...........................................23200.1020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AGTC.........................................24200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTT...................18110.0910100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGTCG---AG...........................................21200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---.............................................20200.0510100000000
droPer2
CAC------TTGGGCGGGTATTAAT----------------TA--T--GAC-------------------AAATC----------------------------------------------ATGCAAAGC-------------AA-A------------------------------------------------------------------------------AG-CA--AAGCCAAAGC---C--AAAACTAA---TT-TC--------------------------ATT-----------------------------------------------A--AA---AAACCA---------------------------TCAT---------------------------TTTTTGCGCCC--GGTACTCAAAAAGAGTGC------AAGGGGCATATTCGATTTGT------GTGTGTAAGA-CCCAGAAGGAA-GCGTTTCCGACCCCATAATGTGTATATATTCTTGATCAGCATCAATAGTCG---AGTCCATTGAGCCATGTCTGTCTGTTC------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGTCG---AGTCCAT......................................2920.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG---AGT..........................................23200.306060000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTGAGCCATGTCTGTCT......................2260.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGTCG---AGT..........................................24200.153030000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTT...................19170.061010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATTCTTGATCAGCA..........................................................21200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGTCG---AG...........................................21200.051010000
droAna3
ATT------T-------------------------ATTTAT--TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTGAATTG-------------TTTTGGGTT--AAAC-----------------------------------TGAA-----------------------------------------------------------ATT-----------------------------------------------G--AA---ATGCAGTTGTTCTATTCGGCCGCTTTTAAAATATACT---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTG---AGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGTCGATATGAGCATGTCCG.........................21200.75151500000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTCTGTCC..........27200.357070000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTCAAAAGTGTGCAACG-CAGT...........................................................................................................27200.306060000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTCAAAAGTGTGCAACG-...............................................................................................................23200.204000004
......................................TAT--TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153030000
...........................................TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153300000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAAAAGTGTGCAACG-CAGTGAA........................................................................................................26200.153300000
............................................................................TACAGAGTGAA--------------------------------------------------------------CCAGCCACTGAATTG-------------....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTCCTG---AGTCGATATGAGCATG.............................28200.102200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATGAGCATGTCCG.........................20200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAG-ACATCTCCGACCCTATAAAGTA.............................................................................27200.102020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACATCTCCGACCCTATAAAG...............................................................................21200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCC..................21200.102000002
.............................................................................................................................................................................................................................................................................................................................................................TGCAGTTGTTCTATTCGGCCGC..................................................................................................................................................................................................................................22180.061100000
....................................................................................................................................................................................................................................................................................................T-----------------------------------------------G--AA---ATGCAGTTGTTCTATTCGGC.....................................................................................................................................................................................................................................24180.061100000
...................................................................................................................................................................................................................................................................................................TT-----------------------------------------------G--AA---ATGCAGTTGTTCTATTCGGCCGC..................................................................................................................................................................................................................................28180.061010000
....................................................................................................................................................................................................................................................................................................T-----------------------------------------------G--AA---ATGCAGTTGTTCTATTCGGCC....................................................................................................................................................................................................................................25180.061000010
.................................................................................AGTGAA--------------------------------------------------------------CCAGCCACTGAATTG-------------TTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..............................................G-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTGAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGTGCAACG-CAGTGAAGGA.....................................................................................................24200.051001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGTCGATATGAGCATGTCCGTCT......................24200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................TTCTATTCGGCCGCTTTTAAAATATACT---------------------------.........................................................................................................................................................................................28200.051010000
.............................................................................................................................................................TGAATTG-------------TTTTGGGTT--AAAC-----------------------------------TGAA-----------------------------------------------------------ATT-----------------------------------------------G--..............................................................................................................................................................................................................................................................28200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCTGTCCGT23200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTGTCCGTC...............26200.051000010
......................................TAT--TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...........................................TTGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTCTGTCCGTCTGTCC..24200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTGTCCG.................24200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------GC------AGAGGGTATTATAATTTTGGTC..............................................................................................................................26200.051000010
...................................................................................TGAA--------------------------------------------------------------CCAGCCACTGAATTG-------------TTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------TTTTTATACCCTT----------------GC------AGAG................................................................................................................................................20200.051100000
............................................TGG-----------------------------TACAGAGTGAA--------------------------------------------------------------CCAGCCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
........................................................................................................................................................GCCACTGAATTG-------------TTTTGGGTT--AAAC-----------------------------------TGA...............................................................................................................................................................................................................................................................................................................................................................................28200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAAAAGTGTGCAACG-CAGTGA.........................................................................................................26200.051000010
droBip1
TAAT--TTAT-C--T----------GTCGG--C----------TTT-----------CTTAAA-----------------------CTCGAAATC--------------------------CTTCTAGAC-------------A---------------------------------------G---------------------------------------------------------T--------------------------TAA-ACATACATAA--GT---------------------------------------------------------------TAAAA---------------------------ACTAAATTTGGCTTTAAATTTTAAATTCATATTTTTATACCCTT----------------GC------AGAGGGTATTATAATTTTGTCCAAAAGTGTGCAACG-CAAGGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTG---AGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTCTGTCTGTSizeHit CountTotal NormTotal
No Reads
droKik1
CAA--TTT---------------------------GTTTCC--TTTTGTA-------AATAAG-----------------------ATCTGATTT--------------------------------------------------------------------C-------------ATATAAA--AAAGGC--------GA--------------------------CA----------AT--------------------------CAA-ACATGAACAT--TTTGG----CCATGTCTAAAGCACATTTTATTAGGT---------GCTTATA-------------------------------------------CACACG---------------------------TTTTTATACCCTT------------------------GCAGGGTATTATAATTTCAGTCAGAAGTTTGCAACG-CAGTGAAGGAG-ACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGTCG---AGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTSizeHit CountTotal NormTotal
No Reads
droFic1
GAT---TC---------------------------ATCTAC--CTTTTTC-------CTGAAA-----------------------TTCGGTCTT--------------------------------------------------------------------T-------------ATTTAGG--CAAAAA------GGAAT-------------------------------------TT--------------------------TACTACATGGATAC-------GTT-CCA---------------------------------T-----------ATTTAAATAATT----------------------------TTAA---------------------------TTTTTATACCCTT-------GC---------AGAGC-AAAGGGTATTATAATTTCAGTCAGAAGTTTACAACG-CAGTGAAGGAG-ACACCTCAAACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTG---AATCGAAATATGTATGTACGTCTGTCCGTCTGTCCGTCTGTCTGTSizeHit CountTotal NormTotal
No Reads
droEle1
TCT--------GG-C----------AT---AACTTGTTAAC--CTTTATT-------TTGAAG-----------------------CTCA--ATT----------------------------------------------------------------------------------GTGTGAGTT--TAGCAAACAATCAAGTTTATTAGCTTGACTAAGCACTCTGT---AT--------------A--------------------------------------------------------------------------------C-----------ATTTAA----G---------------------------TATTAA---------------------------TCTTTATACCCTT----------------GC------AGAGGGTATTATAATTTCAGTCAGAAGTTTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCG---AGTCGATCTAGCCATGTCCGTCTGTCCG--------TCCGTTTATSizeHit CountTotal NormTotal
No Reads
droRho1
GGCAGGTA---A-GCGCGTTTTATAT----TCAA---------TTT--TTGGGTGTC------------------CC-------------------------------------------------------------------------------------------------------------------------------------------------------ATT--------TCAAAGTCGG--------------------------TGTACACGATCCTG----CAAAATCTATCGGACGGATCGTTTTGA---------GATTTTG-------------------------------------------C-ACAG---------------------------TATTTATACCC--GTTACTCGT---------AGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACA-GCTAGAAGGAA-GCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCG---AGTCGATATAGCCATGTCCGTCTGTCTGTCTGTCCGTCTGTCTGTSizeHit CountTotal NormTotal
No Reads
droBia1
ATT------TAGAAC-AATATAATA----------------AA--T--AAT-------------------AAATT----------------------------------------------ATATATTGA-------------TATAT-----------------------------G-------------C-----------------------------------TTA--AAATTAATAA---T--AAGATAAA---AT-AT--------------------------TTT-----------------------------------------------A-TGA----GAAAA---------------------------ACTA---------------------------TTTTTATACCCTT----------------GC------AGAGGGTATAATGATTTCAGTCAGAAGTTTGCAACG-CTGTGAAGGAG-ACGTTTCCGAACCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACG---AGTCGATCTAGCCATGCCCGTCTGTCCG--------TCCGTTTCTSizeHit CountTotal NormTotal
No Reads
droTak1
TT---------GA-G----------GC---AACTTTCATAT--TT-CAACA------GCAAAA-----------------------AACAGAATA------CCATTAC----AAAATATAA-----------------------------------------------------------------------------------------------------------GT-A-------------------TA---CAAGTA--AAAACAATATATGTATAT--------------------------------TTTTAA---------AATAAT-ATTTC-TTA------AG----------------------------GTGA---------------------------TTTTTATATCC--GTTACTCGT---------AGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACA-GCTAGAAGGAA-GCATTTCTGACCCTATAAAGTATATATATTCTTGATTAGGGCCACTAGCCG---AGTCGATATAGCCATGTCCGTCTGTCCGTCTGT----CTGTCCGTSizeHit CountTotal NormTotal
No Reads
droEug1
GACAAAAG---G-TG----------GC---GCTTTGTGAAT--TTTCAAT-------AGGAAA-----------------------ATGAAAAAT-------------------------CATATAAAGT-------------A----------------------------------------------------------------------------------G-TT--ACGGTTATCC---T--ATTACTTA---TT-T---------------------------------------------------------------------------------------ACT----------------------------ATCA---------------------------TTATTATACCC--GTTATTCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACA-GGTAGAAGGAA-GCGTTTCCGACCGTATAAAGTTTATACATTCTTGATTAGGATGAATAGCGA---AGACGAATGAGCCAAGTCCGTCTGTCTGT----TCGTCTGTCCGTSizeHit CountTotal NormTotal
No Reads
dm3
TTCATT---------------------------------AT--TCG--AA-----------------------------ATAATGAA-----------------------------------------------------------------------------------TTGGCCGGTGTGGGTG--GCGC-----------------------------------AAAA-----------------ATACGTCACTAT-----ATA-------------------------C-------------------------------------------------T-------A---------------------------TATATA---------------------------TGTTTATACCC--GTTACTCGT---------GGAGTAAAAGGGTACAATAGATTCGTTGAAAAGTATGTAACA-TGCAAAGGGAA-GCGTTTCCGACCATATAAAGTATATATATTCTTGATCTGGATCAATAGCCG---CGTCGATCTAGCCATGTCCGTCTGTCCTTTT--------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCG---CGTCGATCTAGCCATG.............................26217.503500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100070000000000000000000000000000000000000000000000000010000013000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000350000000000000000102000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCG---CGTCGATCTAGCCATGTCC..........................2526.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000211000000230000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCAATAGCCG---CGTCGATCTAGC.................................2616.0060000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCG---CGTCGATCTAGCCATG.............................2424.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000220000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTACAATAGATTCGTTGAA............................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCTGGATCAATAGCCG---CGT..........................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCG---CGTCGATCTAGCCATGTCCG.........................2623.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100110000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCG---CGTCGATCTAGC.................................2123.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCG---CGTCGATCTAGCCATG.............................2223.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCTGGATCAATAGCCG---CGTC.........................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCG---CGTCGATCTAGCCATGTC...........................2423.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC..................21202.30460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000001000000000000000001111010000000000000000000000000000000000000000000000200040000000000000000302010000400000000000001004184000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACA-TGCAAAGGGAA-GCGTTTCCGAC........................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTGAAAAGTATGT....................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAAAGTATGTAACA-TG.............................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCC--GTTACTCGT---------GGAG......................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCT------C----T----------GCGA--------------------------------GAAATGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------AATTAAGTGCATAC--------------------------------------TGCCTTGAA-----------------------------------------------------AAA---------------------------TTTTTAAAGTC--GGAACCCGT---------AGAGT---------------ATTCGTTGATAAGAATGCAACA-GATAGAAGGAA-GCGCATCCGATCCTGTACAGTATATATATTCTTGGTCAGGACCACATGCCG---AGACGATCTAGCCATGTCCATCTCTCTGTCCGTCTGTCCGTCCGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCCTGTACAGTA.............................................................................1812.00220000000000000000
.................................................................TGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------A........................................................................................................................................................................................................................................................................................................................................2512.00200000000020000000
.................................................................TGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------.........................................................................................................................................................................................................................................................................................................................................2412.00200000000020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACCACATGCCG---AGACGATCTAGC.................................2712.00200000020000000000
.................................................................TGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------AAT......................................................................................................................................................................................................................................................................................................................................2712.00200000000020000000
........................................................................TAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------AATTAAGTGCA..............................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGGTCAGGACCACATGC..................................................2711.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGTC--GGAACCCGT---------AGAGT---------------ATT...................................................................................................................................2611.00100100000000000000
...............................................................AATGGGAATTAAGTGC-------------------------------------------------------------------------------------------------------------------------------------------------TCTGAAA--------CAT--------------------------A........................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAACA-GATAGAAGGAA-GC.................................................................................................2120.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAACA-GATAGAAGGA.....................................................................................................1820.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAACA-GATAGAAGGAA-...................................................................................................1920.50100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GATAGAAGGAA-...................................................................................................1570.43300000010002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GATAGAAGGAA-GCG................................................................................................1850.20100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-GATAGAAGGAA-GC.................................................................................................1650.20100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-GATAGAAGGAA-G..................................................................................................1570.14100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GATAGAAGGAA-G..................................................................................................1670.14100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTGTCCGTCA..........15200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GATAGAAGGAA-A..................................................................................................16200.05100000000001000000
droSec2
ATT------T-------------------------ATT----A--T--GAA------------------TATATAGTAC----------------------------------------------ACAGAATTTGATGTATTTAATATGCCAGGCACAATATTGTATCGAT-----------------------------------------------------------------------------TGAGTGGA---AA-GA--------------------------TTT-----------------------------------------------C-TAA---AAACG----------------------------GCCA---------------------------TTTTTATACCC--GTTAATCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAGGGTATGTAACAAGGCAGAAGGAAGGCGTTTCCAACTATATAAAGTATATAAGCTCTTGATCAGGATCAATAGCCG---AGTCGATCTAGCCATGTCCGTCTGTTCG----------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAGGGTATGTAACAAGGC............................................................................................................2511.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGATCAGGATCAATAGC..................................................2130.3311000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG---AGTCGATCTAGCCATGTCC..........................23200.2044000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCG---AGTC.........................................25200.1022000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGT---------AGAGTAAAAGGGTATA..........................................................................................................................................22110.0911000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGTCTG.....................24200.0510010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG..............................................................................................................................21200.0511000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCG---AGTCGAT......................................21200.0510100
................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------AGAGTAAAAGGGTATACTAGA.....................................................................................................................................23200.0511000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---AGTCGATCTAGCCATGTCCGTCTG.....................26200.0511000
droYak3
TT---------GG-T----------GT---AAGATTTTAAT--TTTT--T-------AGGAGA-----------------------TTCGGAATTTGTGCATCATAGT----CGACTATAT-----------------------------------------------------------------------------------------------------------AT-T-------------------TA---CAATTT--AATTCAATAAATG----------------------------------------------------------------------------------------------------------TC---------------------------TCATTATACCC--GTTACTCGT---------AGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACA-GGCAGAAGGAA-GCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCG---AGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTCTGTCCGTC...26200.8517017000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT---------AGAGTAAAAGGGTATACTA.......................................................................................................................................23200.6513013000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCCATGTCCGTCTGTCCGTCCGTC...........28200.5511001100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACA-GGCAGAAGGAA-GCGTTTCCGAC........................................................................................28200.40800800000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGTATGTAACA-GGCAGAAGGAA-...................................................................................................27200.40808000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GGCAGAAGGAA-GCGTTTCCG..........................................................................................22200.25500000000005
................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCC--GTTACTCGT---------AGAGTAAAAG................................................................................................................................................26200.20404000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCG---AGTCGATCTGG..................................27200.20400100000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCG---AGTCGATCTGGCC................................26200.20400400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG---AGTCGATCTGGCCATGT............................20200.15303000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTCCGTCTGTC...................24200.15300300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCG---AGTCGATCTGGC.................................26200.15300000000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCG---AGTCGATC.....................................25200.10200200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG---AGTCGATCTGGCCATG.............................20200.10202000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGCAGAAGGAA-GCGTTTCCGACCAT.....................................................................................26200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCTGTCCG.....26200.05100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGCCATGTCCGTCTGTC...................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCG---AGTCGA.......................................28200.05100100000000
droEre2
AGT------TTGG-A----------TT---AACTTCCAAAC--TTTCAGC---------GAGA-----------------------GAGAGAGTT----------------------------------------------------------------------------------GCAGTAA--TAAAAT-----------------------------------A----------------------------CAAT-----AAACAATAAATGAATGT--------------------------------------TGCGTCCAA-----------------------------------------------------GAA---------------------------CGGTTATACCC--GTTACTCGT---------AGAGTAAAAGGGTAC--TAGATTCATTGAAAAGTATGTAACA-A---GAATG-T-ATGTATGTAACCATATAAAGTATATATATTCTTGATCAGGATCAATATCCG---AGTCGAACTGGCCATGTCCGTCTGTCCG----------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATATCCG---AG...........................................22100.1011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATATCCG---AGT..........................................20110.0910000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGCCATGTCCGTCTGTCC..................24200.0510100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGTCGAACTGGCCATGTCCGTCT......................24200.0510000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................TACCC--GTTACTCGT---------AGAGTAAAAGG...............................................................................................................................................25200.0511000000

Generated: 05/19/2015 at 06:03 PM