ID:

dvi_13503

 Coordinate:

scaffold_12970:7631132-7631418 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.2 -25.2 -24.7

Flybase annnotation

exon [dvir_GLEANR_3614:1]; CDS [Dvir\Gpi1-cds]; CDS [Dvir\Gpi1-cds]; exon [dvir_GLEANR_3614:2]; intron [Dvir\Gpi1-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCAATATATTGTTGGCAACAAATTTATAAATAGTATAATAACCCACACAGTCATTTATAGACATTATAAGGAATGGCAATCGATCTATACAAAGGGGTAAGATTTGGTTAACATTTTTCATTCATTTTAATTTATTTATTTATTAATATATTTTATTCTCAGTTCCAGATTGTCGAATATTATGATTGATCGTGCATTGGGCATTATTTTGATGCTGGTATTGTTTACGCTTGTTTCTCATCCAGGCGATTTCCTTATTCAGATCTCCCACGTAAGCTCAACGTTTTTATAGACGACAAACTGCTCTGTCACTGAAGAGTCATCTTTTCTTTTCAGATTATTATACATCAGCTATATAGTCTTTTGAAGGTTTTGGAGGGTAGTCC
************************************************************.........(((((((..(((((((((.(((......)))))).))))))..))))))).......................((((((.(((..(((((.(((((...)))))..)))))..))))))))).........(((((((...)))))))...*********************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 GSM1528803
follicle cells		 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 V053
head
 SRR060659
Argentina_testes_total
 SRR060681
Argx9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
......................................................................................................................................................................................................................................................................GTTCTCCCACGTAAGCCCAGC........................................................................................................ 21 3 2 16.50 33 28 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GAGGAGTTATCTTTTCTT....................................................... 18 2 12 4.67 56 0 0 0 11 3 14 2 1 0 1 0 0 0 0 0 0 0 0 0 4 4 4 2 2 2 1 1 1 1 1 1
........................................................................................................................................................................................................GGCATTATTTTGATGCTGGT....................................................................................................................................................................... 20 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................GAAGGTTTTGGAGGGTAGT.. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TATATACGAAGGGGTAAGATTTGG....................................................................................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATAAATAGTATAATAACCCACAC.................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TATATACGAAGGGGTAAGATTTG........................................................................................................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TATATACGAAGGGGTAAGATTCGG....................................................................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTATGATTGATCGTGCATTGGGCATT..................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TCTCCCACGTAAGCCCAGC........................................................................................................ 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GACATTATAAGGAATGGCAATCGATC............................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GTTCTCCCACGTAAGCCCAAC........................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................TTTTGAAGGTTTTGGAGGGTAGTCC 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TGAGTCATCTTCTCTTTTCTGA................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCAGATTGTCGAATATTATGATTGA..................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CAGACATTATAAGGAATGGCAATC................................................................................................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTCTCATCCAGGCGATTTCCTTATTCA............................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGAATATTATGATTGATCGTGCAT............................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTTGATGCTGGTATTGTTTACGCTTG......................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CATCAGCTATATAGTCTTTT..................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATAGTATAATAACCCACACAGTCATTTA......................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATGATTGATCGTGCATTGGGCATT..................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GAGGAGTTATCTTTTCTTCT..................................................... 20 3 13 0.85 11 0 0 0 3 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................GGTCTCCCACGTAAGCCCAGC........................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CCCTGAGGAGTTATCTTTTCT........................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GAGGAGTCATCTTTTCTTCTT.................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGTTTTGGTGGGTA.... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGAGGAGTTATCTTTTCTT....................................................... 19 3 20 0.25 5 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GCTCTCCCACGTAAGCCCAGC........................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GAAGAGTTATCTTTTCTTC...................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CTCCCACGTAAGCCCAGC........................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TGAGGAGTTATCTTTTCTT....................................................... 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTTTGATGCTGTGATTGTT................................................................................................................................................................. 20 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GTCACTGAAGATTCCGCTT............................................................ 19 3 19 0.11 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................GACATAATAAGGATTGACA.................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TAAGATTTGGTTTACATTTA............................................................................................................................................................................................................................................................................. 20 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGTTATATAACAACCGTTGTTTAAATATTTATCATATTATTGGGTGTGTCAGTAAATATCTGTAATATTCCTTACCGTTAGCTAGATATGTTTCCCCATTCTAAACCAATTGTAAAAAGTAAGTAAAATTAAATAAATAAATAATTATATAAAATAAGAGTCAAGGTCTAACAGCTTATAATACTAACTAGCACGTAACCCGTAATAAAACTACGACCATAACAAATGCGAACAAAGAGTAGGTCCGCTAAAGGAATAAGTCTAGAGGGTGCATTCGAGTTGCAAAAATATCTGCTGTTTGACGAGACAGTGACTTCTCAGTAGAAAAGAAAAGTCTAATAATATGTAGTCGATATATCAGAAAACTTCCAAAACCTCCCATCAGG
***********************************************************************************************************************************************************************.........(((((((..(((((((((.(((......)))))).))))))..))))))).......................((((((.(((..(((((.(((((...)))))..)))))..))))))))).........(((((((...)))))))...************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060655
9x160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 V116
male body		 M047
female body
 M027
male body		 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
.......................................................................................................................................................................................................................................................................................................CTGTTTGACGAGACAGTGACT....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................AATATCTGTCATATTCTCTAC....................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AGTAGATCGGCTCAAGGAAT................................................................................................................................. 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................................................................TTGTAAAGAGTAAGTAAAA.................................................................................................................................................................................................................................................................. 19 1 4 0.25 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................CAAAGGAATAATTCTAGCGG...................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................AGCTTCAAATTCTAACTAGC.................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................CGGTAAAGGAACAGGTCTAG......................................................................................................................... 20 3 20 0.10 2 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................AAAATAATAGGCAAGGTC.......................................................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0
..........................................................................ACCCTTACCAAGATATGTT...................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:7631082-7631468 - dvi_13503 TTCAATATATTGTTGGCAACAAATTTATAAATAGTATAATAACCCACACAGTCATTTATAGACATTATAAGGAATGGCAATCGATCTATACAAAGGGGTAAGATT-------T--GGT-TAACAT----------------------T-TT-TCAT-------------------------------------------------------TCATTTTAA---------------------------------T-TTATTTA-------TTTATTAATATATTTT----ATTCTCAGTTCCAGATTGTCGAATATTATGATTGATCGTGCATTGGGCATTATTTTGATGCTGGTATTGTTTACGCTTGTTTCTCATCCAGGCGATTTCCTTATTCAGATCTCCCACGTAAGCTCAACGTTTTTATAGAC-------------GACAAACTGCTCTGTC---------------------ACTGAAGAGTCA--------------TCTTTT-CT-------TTTCAGATTATTATACATCAGCTATATAGTCTTTTGAAGGTTTTGGAGGGTAGTCC
droMoj3 scaffold_6482:2057318-2057691 + TTAAACATATTGTTGGGAACACATTTGTAAATAGCATTATAACCCATACAGTTATCTATACGCATTATAAGGAATGGCAAACTATATACGCAACAGGGTAAGATG---------TCTA-AAGTATATTT-----------------------------------------------------------------------ATTTGACCCCCTTTTTCTCA-----------------AC-----------------------T-----TTT-------------TGTTTATAATCAGTTCTAGGCTGACAAATATCATGGTAGATCGAGCATTGGGTATTATACTAATGTTGATATTGTTTACACTTGTCTCGCATCCAGGAGATTTTCTAATACAAATCTCCCATGTAAGTTTACC---------TAT-------------TTCAATTGATGT-------------------------AT---TATGGT--TT-TAAACAA---TATATT-AT-------TTACAGATTATAATACAACAGCTATATAGCTTGCTGAAAGTTTTGGAGGGTAGTCC
droGri2 scaffold_15203:6985428-6985821 + TTGAAAATATTATCGGCAATACATTCGTGAATAGTATAATAACCCATACTGTTATCTATAGGCATTATAAGGAATGGCAATTGATATACGCAAATGGGTGAGTTT-------A--------------------------AACAAAACC-TTTTAAT-TTTTTCTGATTC----------------------TGATACT-------------------------------------------------AATTTGA-TTATTTATATGA----------------------CTTCCCAGTTCTAGATTGAGTAATATAATAATAGATCGAGCATTGGGCATTATATTGATGCTGACATTATTTACGCTTGTTTCGCATCCAGGTGATTACCTTATTCAAATCTCCCACGTAAGCCAAAC---------GTT-------------TTAATT-GATAA--GAT----GTTGTA-----C----GCTAAAATACATACCT-------ATATAC-CA-TT-------TTACAGATCATTATAAATCAGTTATACAGCCTTCTGAAAGTTTTGGAAGGGAGTCC
droWil2 scf2_1100000004909:9140708-9141086 - TTAAATATGCTGTTGAAAATAGATTCATTAATAAGCTAATGATGCACACATGTGTCTATAAACATCATAAGGAATGGCAAGAAACATATGATAAAGGGTAAAATT-------T--GAAC-ACCTC------CTGGCG---------------------------------------T--------------------------------AACAGTTAATT-----------------AA--------------------TC-C-----TTGTGTT----------------CAATAGATCCAGACGAACCAATATAATAATCGATCGCATATTGGGCATAATATTGATGATGATATTATTTAAGTTTGTCTCCCATCCCAGTGACTTTCTCATCAAAATGTCACATGTACGTATCCTGTGCAGAA-GGA-------------TAATGC---AGCCAC-A--------------------AAAAAAAAATAAATCA-------ATTTCTTCTTAT-------GTTTAGGGTATCATCAAGCAGTTATATGCCTTGTTGAGAGTATTGGAAGGTAGTCC
dp5 XL_group1e:9831425-9831805 + TTAAATATACTGCCGAAAATGTTTTCATTAATAACATAATGGGACACACGACTGTTTACAAGCACTTTAAAGAATGGCAATCAACCTGTGATAAAGGGTAAGAAT-------A--ATT-TTGTAC-----------------ATGACTT----------------------------------------------------------------------------TTATTTTTATTGAT----------------------------TTTCTATACATTTTTTTTGTTTCGTTATAGTAATAGGATGAAAAATATTGTATTAGATCGAGTGTTGGGTATACTCTTGATGGTGATAATGTTTTCATTAGTTACCTCACCGGGCGATTTCCTTATACAAATATCCCATGTAAGTTGGTC---------GAG-------------AAATGC---A------CA-------------------GATTTAGCAATTATCT-------ATTTACCAT-TA-------TTTTAGGGTATTATTAACCAGCTATACAGCCTGTTGAATGTTTTGGAAGGAAGTCC
droPer2 scaffold_22:370045-370426 - TTAAATATACTGCCGAAAATGTTTTCATTAATAACATAATGGGACACACGACTGTTTATAAGCACTTTAAAGAATGGCAATCAACCTGTAATAAAGGGTAAGAAT-------C--ATT-TTGTAC-----------------ATGACT----------------------------------------------------------TT-----------------TTATTTTTATTGAT----------------------------TTTCTATCAATTTTTTTTGTTTCGTTATAGTAATAGGATGAAAAATATTGTATTAGATCGAGTATTGGGTATACTCTTGATGGTGATAATGTTTTCATTAGTTACCTCACCGGGCGATTTCCTTATACAAATATCCCATGTAAGTTGGAC---------GAG-------------AAATGC---A------CA-------------------CATTTAGCAATTATCC-------ATTTACCAT-TA-------TTTTAGGGTATTATCAACCAGCTATACAGCCTGTTGAATGTTTTGGAAGGAAGTCC
droAna3 scaffold_13137:1022370-1022750 - TTCAATATTTTGTTGCAAATATTTTTGTCAATAAACTTATTGAGCATACAACAGTCTACAAAAACTTTAAGGAATGGAATAAGGAATACGATAAAGGGTAATATA---------TTTAC-ATACT---------------------------------------------------TTGTAAACG----A-TGGGTGT-----------AATTATTATAT-----------------AT--------------------TT-TTTGTATTATAAT----------------ACACAGATCAAGACAAACAAATATAATACTTGATCGTGTTATAGGAATGATATTAATGGTAATACTGTTTTCTTTAGCGATACAGCCAGGAGATTTTCTCATTCAAGTTTCTCACGTAAGTAAGGCT--------ATA-------------AAATGT---T------AA-------------------AA-AAAAAGTTTAATA-------ATTTATCTC-TG-------TACTAGGCTATTATTGGACATCTGTACAGCCTCCTAAACGTATTAGAAGGAAGCCC
droBip1 scf7180000396784:22142-22523 + TTCAATATCTTTTTGAAAACATTTTGGTCAATAAACTTATTGAGCATACAACAGTTTACAAAAACTTTAAGGAATGGAAACAAACTTACGGAAAGGGGTAATACA---------TTTGT-------------TTGCG---------------------------------------TTATA-----------AATGATAAATGT-----AATGATTATAT----TTTTTCTC-----TG----------------------------ATTATAAT----------------TTACAGATCCAGACAACCGAATATAATACTTGATCGTGTTATAGGTATGCTATTAATGGTAGTGCTGTTTTCTTTAGCTATACAGCCAGGAGATTTTCTCATTAAAGTTTCTCACGTACGTAAGCT---------ATA-------------CAACATTA---------A-------------------AATATAATATTAAATT-------TTTTCTCTC-TA-------TATAAGGCCATTATTGGAAATGTGTACAGTCTTCTGAACGTATTAGAAGGAAGTCC
droKik1 scf7180000302698:50955-51384 - TTAGATATATTGCCGAAAACGTATTTGTGAACAGCATAGTAGTGCATACGACTATATACAAGCATTTTAAAGAATGGCAGTCAACTTGTGATACACGGTAAGAGTGCAGTTCA---GA-TTACAT----------------------C-TT-TGATATGTACTTGTACCTGCCTTG---GGTACAATCGAATA------CATCTGAATATACCATTTTTAATTATTTATTTTTGTAAAC----------------------------C-----CT----------------GTATAGATCTCGTCCTATAAATATTGCTTTGGATAGAATACTGGGTGTTATTTCCATGATAATACTCTTTTCGCTTGCCACACAACCAGGAGATTTTCTTATACAGATATCACACGTAAGTTGGGCCTAT-----CTC--------CG---AAG------------------------TAGAAT----CATCTAATATTTAT---------ATTTATTTT-CA-------TTTCAGGTTGTTATTGATCAATTATACAGCCTGTTGAAGGTATTGGAGGGCAGTCC
droFic1 scf7180000453495:519175-519552 + TCAAATATATTGTTGAAAATGTATTCATTAATAGCATAATGGTTCATACCACTATTTATAAGCACTTTAAGGAATGGCAGACAGCTTGTGATAAACGGTAATGGC---------TCTT-AAATACT-------------------ATT----------------------------------------------------------------------------------------TTTTCTTTGTTATTTGACATTATTTCTTCAC----------------------TTTGACAGATCTCGCCCGGCTAACATTGCACTTGATAGAATATTGGGAATGGTTTTAATGGCAATCCTTTTTTCCCTAGCAACGCGGCCAGGGGATTTTGTGATACAAATATCCCACGTAAGTCTGCC---------ATT-------------ACATAT---A------TG---------TAAAAC----GATATATTATTTTAT--------TCTCCCCCT-GT-------TATTAGTATATTATAGACAAATTATTTAGCCTATTGAAAGTACTGGAGGGAAGTCC
droEle1 scf7180000491182:3657-4059 - TTAAATGTGTTGTTGAAAATGTATTTGTCAATAGCATAATAATTCATACGACTATCTACAAGCACTTCAAGGAATGGCAAGCAACCTGTGATAAACGGTAATGAA---------CGTA-AAATAAACGAAC-TAACTTAATCGA--------------------------------------------------TACC--A-------------CCAT-------TTATTTTCGAAAAC---TTACGATTTAAC-TTGTTTATTTGT----------------------TTTGACAGTACTCGCTCGGCTAATATTGCTCTTGATAGAATAATTGGAGTTACATTGATGCTTATCCTTTTTTCACTAGCGACACAGCCTGGAGATTTTCTAATACCAATATCCCACGTAAGTCTTTC---------ACC-------------CAACGT---T------TAAAA------T---------AAAGTGACGTCA-----------TGTTTTCAA-TT-------TGTTAGTACGTGATTGACGAATTATACAGCCTATTAAAGGTTTTAGAGGGCAGTCC
droRho1 scf7180000779395:16989-17377 + TTAGATATATTGTAGAAAATGCGTTCGTCAATATCATAATGATTCATACGACTATCTACAAACACTTTAAGGAATGGCAAACAACCTGTGATAATCGGTAATAAA---------AGGA-AAAAAACCATAT-TCATTTAATCGA--------------------------------------------------TACT---------------------A------AATGTTTGTAAAT---ATACCATTT---------TGCTTAT----------------------CTTGGCAGAACTCGCCAGGCTAACATTGCACTTGATAGAATAATGGGAATGATAGTGATGCTAATACTTTTTTCATTAGCGACACAGCCGGGAGATTTTCTTATACCTATATCGCACGTAAGTCTGTC---------ACT-------------TAACGTTGTCACTTGT---------------------TACGTTACAT---------------TTACCAT-TT-------TGTCAGTACGTTATTGACGAATTATACAGCCTACTAAAGGTATTAGAAGGAAGTCC
droBia1 scf7180000302126:755237-755613 - TCAGATATATTGCTGAAAATGTGTTTGTCAACAGCATAATGGTTCATACCAGCATCTACAAGCATTTCAGGGAGTGGCAGACCACATGTGAAGAGGGGTAATTCA---------GTTTACCATAGAAGTTTTTACC------------C---------------------------A--------------------------------ATCTATTATAA-----------------TC-----------------------TTTGT----------------------GTCCATAGGTCTCGCCCGCCTAATATTGCACTTGACAGAGCTTTGGGGATCATACTGATGTTAATACTCTTCTCCCTAGCCACACAGCCGGGAGACTTTCTTATACAAATATCCCACGTAGGTCTGAT---------ATC-------------TAAGAT---------------CTCATA-----TCACATAT--TACATC--CT-ACTATTT---TACCCT-TT-------TCCCAGTACGTTATTGACCAGCTGTACAGCCTGTTAAAAGTACTGGAGGGCAGTCC
droTak1 scf7180000413933:25274-25656 - TTAAATATGTTGTTGAAAATGTGTTTGTCAATAGCATAATGGTTCATACAAGCATCTACAAACATTTCAAGGAGTGGCAGACAACCTGTGATGGGCGGTAATTTA---------TTTCAAAATAATAATAT-TCACCTTATCA--------------------------------------------------------------------ATACTACTT----------------------------------------CATTTAC----------------------CTTGACAGATCTCGCCCTGCTAATATTGCACTTGATAGAATATTGGGAATGATATTGATGCTCATACTTTTCTCCCTAGCGACACAGCCGGGAGATTTTCTCATTCAAATATCCCACGTAAGTATTTT---------TATATATTTAAATATATAAAAT---------------AATTTA-----T---------AGTATATTGT--------GTTTACTTG-AA-------CATTAGTACGTTATTGATGAGTTATACAGCCTATTGAAGGTACTGGAAGGCAGTCC
droEug1 scf7180000409008:1363992-1364361 - TTAAATATATTGCTGAAAATATATTTGTTAATAGTATAATGGTTCATACAACTATATATAAGCATTTTAAGGAATGGCAGTTAACGTGTGATAAAAGGTAAAATT-------AATTTAA--------------------GTCGA--------------------------------------------------TACT--AATTTACATTATTAAAATTT----------------------------------------CATTTAT----------------------GTTTTTAGATCTTGCCTGGCTAATATAGCACTTGATAGAATACTGGGGATTATACTAATGTTAATTCTTTTATCACTTGCGGCACAGCCGGGTGATTTTCTAATACAAATATCCCACGTAAGTATAAA---------ATC-------------GAAAATTCAAATTATT---------------------AGAGTAATATTA---------------CCTTT-TC-------TTATAGTACGTTATTGACGAATTATACATCCTATTGAAAGTATTAGAGGGCAGTCC
dm3 chrX:16253923-16254305 + TCGAATATATGGCGGAAAATGTATTTATCAACAGCATTATGGTTCACACAACTATTTATAAGCATTTCAAGGAATGGCAGACAGCATGTGATAAAAGGTAGTTGG---------GTTAA--------------------ATCG----------------------------------------------A-TGATGCTAAATATCATATTACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTTCTTGATAGAATACTGGGGATTATATTGATGCTAATACTATTTACGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------CAAATTTGATTTTACA---------------------TATGTGACATTAACTT-------AT------TGC-TTATCTATTGTAGTACGTTATTGACGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCC
droSim2 x:15364069-15364443 + dsi_12295 TCGAATATATGGCAGAAAATGTATTTATCAACAGAGTTATGGTTCACTCAACTATTTATAAGCATTTCAAGGAATGGCAGACTGCATGTGATAAACGGTATTATT-------A--TTAT-TACTATTATTATAACT------------A---------------------------T--------------------------------AACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTACTTGATAGAATACTGGGGATTATACTGATGCTAATACTATTTTCGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------CAAATTTGATTTTAAA---------------------TATGTGACATTAACT----------------TGC-TTATCTATTGTAGTACGTCATTGACGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCC
droSec2 scaffold_17:71455-71823 + TCGAATATATGGCGGAAAATGTATTTATCAACAGAGTTATGGTTCACTCAACAATTTATAAGCATTTCAAGGAATGGCAGACTGCATGTGATAAAAGGTATTATT-------A--TTAC-TATTA------TAACT------------A---------------------------T--------------------------------AACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTACTTGATAGAATACTGGGGATTATATTGATGCTAATACTATTTTCGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------AAAATTTGATTTTACA---------------------TATGTGCCATTAACT----------------TGC-TTATCTATTGTAGTACGTCATTGATGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCC
droYak3 X:10375239-10375614 + TTGAATATATTGCTGAAAATGTATTTGTTAACAGCATTATGGTTCATACAACTATTTATAAGCATTTTAAGGAATGGCAGGCAGCATGTGATAAAGGGTAATTAA---------ACTAA--------------------ATCG----------------------------------------------A-TGGTACTACATTTCATATTACTATTACTA-----------------GT----------------------------TTTCTATC----------------ACGCAGATCTCGACCGGCTAATATAGCACTTGATAGAATACTGGGGATTATATTGATGTTAATACTATTTTCACTTGCCACACAGCCAGGTGATTTTCTAATACAAATATCTCATGTAAGTCCGCC---------TTC-------------CAAATTCGTTTG-------------------------TATTTGACATTTATT----------------TGC-TGATTTATTCTAGTATGTCATTGACGAATTGTACAGCCTGTTGAAAGTATTAGAGGGCAGCCC
droEre2 scaffold_4690:10843312-10843686 - TCGAATATGTTGCGGAAAATGTAATTGTCAACAGTATTATGGTTCATACAACTATTTATAAGCATTTCAAGGAATGGCAAATAGCATGTGATAAAAGGTAATTGA---------GCTAA--------------------ATCG----------------------------------------------AATGGTACC--ATTTCATATTACTATTACTA-----------------GT----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGCACTTGATAGAATAATGGGAATTATATTGATGCTAATACTATTTTCACTTGCCACACAGCCAGGTGATTTTCTAATACAAATATCTCATGTAAGTCCGCC---------ATC-------------CAAATTTGATTT-------------------------GATATGACATTTATG----------------TGC-TTATTTATTTCAGTATGTCATTGACGAATTATACCGGCTGTTGAAAGTATTAGAGGGCAGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTCAATATATTGTTGGCAACAAATTTATAAATAGTATAATAACCCACACAGTCATTTATAGACATTATAAGGAATGGCAATCGATCTATACAAAGGGGTAAGATT-------T--GGT-TAACAT----------------------T-TT-TCAT-------------------------------------------------------TCATTTTAA---------------------------------T-TTATTTA-------TTTATTAATATATTTT----ATTCTCAGTTCCAGATTGTCGAATATTATGATTGATCGTGCATTGGGCATTATTTTGATGCTGGTATTGTTTACGCTTGTTTCTCATCCAGGCGATTTCCTTATTCAGATCTCCCACGTAAGCTCAACGTTTTTATAGAC-------------GACAAACTGCTCTGTC---------------------ACTGAAGAGTCA--------------TCTTTT-CT-------TTTCAGATTATTATACATCAGCTATATAGTCTTTTGAAGGTTTTGGAGGGTAGTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................GGCATTATTTTGATGCTGGT...............................................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000003
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTTTGGAGGGTAGT..1911.001000000000000000000000000000000001000000000000000000000000000000
..........................ATAAATAGTATAATAACCCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTATGATTGATCGTGCATTGGGCATT.............................................................................................................................................................................................................................................2611.001000000000000010000000000000000000000000000000000000000000000000
............................................................GACATTATAAGGAATGGCAATCGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAGGTTTTGGAGGGTAGTCC2511.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TCCAGATTGTCGAATATTATGATTGA.............................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TTCTCATCCAGGCGATTTCCTTATTCA.....................................................................................................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CGAATATTATGATTGATCGTGCAT.....................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTTTGATGCTGGTATTGTTTACGCTTG.................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCTATATAGTCTTTT.....................2011.001000000000000000000000000000000000000100000000000000000000000000
..............................ATAGTATAATAACCCACACAGTCATTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TATGATTGATCGTGCATTGGGCATT.............................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
TTAAACATATTGTTGGGAACACATTTGTAAATAGCATTATAACCCATACAGTTATCTATACGCATTATAAGGAATGGCAAACTATATACGCAACAGGGTAAGATG---------TCTA-AAGTATATTT-----------------------------------------------------------------------ATTTGACCCCCTTTTTCTCA-----------------AC-----------------------T-----TTT-------------TGTTTATAATCAGTTCTAGGCTGACAAATATCATGGTAGATCGAGCATTGGGTATTATACTAATGTTGATATTGTTTACACTTGTCTCGCATCCAGGAGATTTTCTAATACAAATCTCCCATGTAAGTTTACC---------TAT-------------TTCAATTGATGT-------------------------AT---TATGGT--TT-TAAACAA---TATATT-AT-------TTACAGATTATAATACAACAGCTATATAGCTTGCTGAAAGTTTTGGAGGGTAGTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................TTATAAGGAATGGCAAACTATATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
TTGAAAATATTATCGGCAATACATTCGTGAATAGTATAATAACCCATACTGTTATCTATAGGCATTATAAGGAATGGCAATTGATATACGCAAATGGGTGAGTTT-------A--------------------------AACAAAACC-TTTTAAT-TTTTTCTGATTC----------------------TGATACT-------------------------------------------------AATTTGA-TTATTTATATGA----------------------CTTCCCAGTTCTAGATTGAGTAATATAATAATAGATCGAGCATTGGGCATTATATTGATGCTGACATTATTTACGCTTGTTTCGCATCCAGGTGATTACCTTATTCAAATCTCCCACGTAAGCCAAAC---------GTT-------------TTAATT-GATAA--GAT----GTTGTA-----C----GCTAAAATACATACCT-------ATATAC-CA-TT-------TTACAGATCATTATAAATCAGTTATACAGCCTTCTGAAAGTTTTGGAAGGGAGTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTAAATATGCTGTTGAAAATAGATTCATTAATAAGCTAATGATGCACACATGTGTCTATAAACATCATAAGGAATGGCAAGAAACATATGATAAAGGGTAAAATT-------T--GAAC-ACCTC------CTGGCG---------------------------------------T--------------------------------AACAGTTAATT-----------------AA--------------------TC-C-----TTGTGTT----------------CAATAGATCCAGACGAACCAATATAATAATCGATCGCATATTGGGCATAATATTGATGATGATATTATTTAAGTTTGTCTCCCATCCCAGTGACTTTCTCATCAAAATGTCACATGTACGTATCCTGTGCAGAA-GGA-------------TAATGC---AGCCAC-A--------------------AAAAAAAAATAAATCA-------ATTTCTTCTTAT-------GTTTAGGGTATCATCAAGCAGTTATATGCCTTGTTGAGAGTATTGGAAGGTAGTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................AATCGATCGCATATTGGGC................................................................................................................................................................................................................................................1912.00200020
.................................................................................................................................................................................................................................................................................................................GAACCAATATAATAATCGATCGCAT.......................................................................................................................................................................................................................................................2511.00110000
.........................................................................................................................................................................................................................................................................................................................................................................AAGTTTGTCTCCCATCCCAGTGACT...............................................................................................................................................................................................2511.00101000
dp5
TTAAATATACTGCCGAAAATGTTTTCATTAATAACATAATGGGACACACGACTGTTTACAAGCACTTTAAAGAATGGCAATCAACCTGTGATAAAGGGTAAGAAT-------A--ATT-TTGTAC-----------------ATGACTT----------------------------------------------------------------------------TTATTTTTATTGAT----------------------------TTTCTATACATTTTTTTTGTTTCGTTATAGTAATAGGATGAAAAATATTGTATTAGATCGAGTGTTGGGTATACTCTTGATGGTGATAATGTTTTCATTAGTTACCTCACCGGGCGATTTCCTTATACAAATATCCCATGTAAGTTGGTC---------GAG-------------AAATGC---A------CA-------------------GATTTAGCAATTATCT-------ATTTACCAT-TA-------TTTTAGGGTATTATTAACCAGCTATACAGCCTGTTGAATGTTTTGGAAGGAAGTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................TACTCTTGATGGTGATAAT............................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................ATATTGTATTAGATCGAGTGTTGGGT................................................................................................................................................................................................................................................2611.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATACAGCCTGTTGAAT.................2011.0010100000000
droPer2
TTAAATATACTGCCGAAAATGTTTTCATTAATAACATAATGGGACACACGACTGTTTATAAGCACTTTAAAGAATGGCAATCAACCTGTAATAAAGGGTAAGAAT-------C--ATT-TTGTAC-----------------ATGACT----------------------------------------------------------TT-----------------TTATTTTTATTGAT----------------------------TTTCTATCAATTTTTTTTGTTTCGTTATAGTAATAGGATGAAAAATATTGTATTAGATCGAGTATTGGGTATACTCTTGATGGTGATAATGTTTTCATTAGTTACCTCACCGGGCGATTTCCTTATACAAATATCCCATGTAAGTTGGAC---------GAG-------------AAATGC---A------CA-------------------CATTTAGCAATTATCC-------ATTTACCAT-TA-------TTTTAGGGTATTATCAACCAGCTATACAGCCTGTTGAATGTTTTGGAAGGAAGTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................GTATTAGATCGAGTATTGGGTATACT...........................................................................................................................................................................................................................................2612.002200000
................................AACATAATGGGACACACGACTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
...........................................................................................................................................................................................................................................................................................................................................................................ATTAGTTACCTCACCGGGC...................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................GTTTTCATTAGTTACCTCACCGGGC...................................................................................................................................................................................................2511.001010000
..............................................CACGACTGTTTATAAGCACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droAna3
TTCAATATTTTGTTGCAAATATTTTTGTCAATAAACTTATTGAGCATACAACAGTCTACAAAAACTTTAAGGAATGGAATAAGGAATACGATAAAGGGTAATATA---------TTTAC-ATACT---------------------------------------------------TTGTAAACG----A-TGGGTGT-----------AATTATTATAT-----------------AT--------------------TT-TTTGTATTATAAT----------------ACACAGATCAAGACAAACAAATATAATACTTGATCGTGTTATAGGAATGATATTAATGGTAATACTGTTTTCTTTAGCGATACAGCCAGGAGATTTTCTCATTCAAGTTTCTCACGTAAGTAAGGCT--------ATA-------------AAATGT---T------AA-------------------AA-AAAAAGTTTAATA-------ATTTATCTC-TG-------TACTAGGCTATTATTGGACATCTGTACAGCCTCCTAAACGTATTAGAAGGAAGCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................AACAAATATAATACTTGATCGTGTTATA...................................................................................................................................................................................................................................................2811.001010000
......................................................................................................................................................................................................................................................................................................................AATATAATACTTGATCGTGT.......................................................................................................................................................................................................................................................2011.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTATTAGAAGGAAGCCC2120.501010000
................................................................CTTTAAGGAATGGAATAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACATCTGTACAGCC.........................1920.501001000
droBip1
TTCAATATCTTTTTGAAAACATTTTGGTCAATAAACTTATTGAGCATACAACAGTTTACAAAAACTTTAAGGAATGGAAACAAACTTACGGAAAGGGGTAATACA---------TTTGT-------------TTGCG---------------------------------------TTATA-----------AATGATAAATGT-----AATGATTATAT----TTTTTCTC-----TG----------------------------ATTATAAT----------------TTACAGATCCAGACAACCGAATATAATACTTGATCGTGTTATAGGTATGCTATTAATGGTAGTGCTGTTTTCTTTAGCTATACAGCCAGGAGATTTTCTCATTAAAGTTTCTCACGTACGTAAGCT---------ATA-------------CAACATTA---------A-------------------AATATAATATTAAATT-------TTTTCTCTC-TA-------TATAAGGCCATTATTGGAAATGTGTACAGTCTTCTGAACGTATTAGAAGGAAGTCCSizeHit CountTotal NormTotal
No Reads
droKik1
TTAGATATATTGCCGAAAACGTATTTGTGAACAGCATAGTAGTGCATACGACTATATACAAGCATTTTAAAGAATGGCAGTCAACTTGTGATACACGGTAAGAGTGCAGTTCA---GA-TTACAT----------------------C-TT-TGATATGTACTTGTACCTGCCTTG---GGTACAATCGAATA------CATCTGAATATACCATTTTTAATTATTTATTTTTGTAAAC----------------------------C-----CT----------------GTATAGATCTCGTCCTATAAATATTGCTTTGGATAGAATACTGGGTGTTATTTCCATGATAATACTCTTTTCGCTTGCCACACAACCAGGAGATTTTCTTATACAGATATCACACGTAAGTTGGGCCTAT-----CTC--------CG---AAG------------------------TAGAAT----CATCTAATATTTAT---------ATTTATTTT-CA-------TTTCAGGTTGTTATTGATCAATTATACAGCCTGTTGAAGGTATTGGAGGGCAGTCCSizeHit CountTotal NormTotal
No Reads
droFic1
TCAAATATATTGTTGAAAATGTATTCATTAATAGCATAATGGTTCATACCACTATTTATAAGCACTTTAAGGAATGGCAGACAGCTTGTGATAAACGGTAATGGC---------TCTT-AAATACT-------------------ATT----------------------------------------------------------------------------------------TTTTCTTTGTTATTTGACATTATTTCTTCAC----------------------TTTGACAGATCTCGCCCGGCTAACATTGCACTTGATAGAATATTGGGAATGGTTTTAATGGCAATCCTTTTTTCCCTAGCAACGCGGCCAGGGGATTTTGTGATACAAATATCCCACGTAAGTCTGCC---------ATT-------------ACATAT---A------TG---------TAAAAC----GATATATTATTTTAT--------TCTCCCCCT-GT-------TATTAGTATATTATAGACAAATTATTTAGCCTATTGAAAGTACTGGAGGGAAGTCCSizeHit CountTotal NormTotal
No Reads
droEle1
TTAAATGTGTTGTTGAAAATGTATTTGTCAATAGCATAATAATTCATACGACTATCTACAAGCACTTCAAGGAATGGCAAGCAACCTGTGATAAACGGTAATGAA---------CGTA-AAATAAACGAAC-TAACTTAATCGA--------------------------------------------------TACC--A-------------CCAT-------TTATTTTCGAAAAC---TTACGATTTAAC-TTGTTTATTTGT----------------------TTTGACAGTACTCGCTCGGCTAATATTGCTCTTGATAGAATAATTGGAGTTACATTGATGCTTATCCTTTTTTCACTAGCGACACAGCCTGGAGATTTTCTAATACCAATATCCCACGTAAGTCTTTC---------ACC-------------CAACGT---T------TAAAA------T---------AAAGTGACGTCA-----------TGTTTTCAA-TT-------TGTTAGTACGTGATTGACGAATTATACAGCCTATTAAAGGTTTTAGAGGGCAGTCCSizeHit CountTotal NormTotal
No Reads
droRho1
TTAGATATATTGTAGAAAATGCGTTCGTCAATATCATAATGATTCATACGACTATCTACAAACACTTTAAGGAATGGCAAACAACCTGTGATAATCGGTAATAAA---------AGGA-AAAAAACCATAT-TCATTTAATCGA--------------------------------------------------TACT---------------------A------AATGTTTGTAAAT---ATACCATTT---------TGCTTAT----------------------CTTGGCAGAACTCGCCAGGCTAACATTGCACTTGATAGAATAATGGGAATGATAGTGATGCTAATACTTTTTTCATTAGCGACACAGCCGGGAGATTTTCTTATACCTATATCGCACGTAAGTCTGTC---------ACT-------------TAACGTTGTCACTTGT---------------------TACGTTACAT---------------TTACCAT-TT-------TGTCAGTACGTTATTGACGAATTATACAGCCTACTAAAGGTATTAGAAGGAAGTCCSizeHit CountTotal NormTotal
No Reads
droBia1
TCAGATATATTGCTGAAAATGTGTTTGTCAACAGCATAATGGTTCATACCAGCATCTACAAGCATTTCAGGGAGTGGCAGACCACATGTGAAGAGGGGTAATTCA---------GTTTACCATAGAAGTTTTTACC------------C---------------------------A--------------------------------ATCTATTATAA-----------------TC-----------------------TTTGT----------------------GTCCATAGGTCTCGCCCGCCTAATATTGCACTTGACAGAGCTTTGGGGATCATACTGATGTTAATACTCTTCTCCCTAGCCACACAGCCGGGAGACTTTCTTATACAAATATCCCACGTAGGTCTGAT---------ATC-------------TAAGAT---------------CTCATA-----TCACATAT--TACATC--CT-ACTATTT---TACCCT-TT-------TCCCAGTACGTTATTGACCAGCTGTACAGCCTGTTAAAAGTACTGGAGGGCAGTCCSizeHit CountTotal NormTotal
No Reads
droTak1
TTAAATATGTTGTTGAAAATGTGTTTGTCAATAGCATAATGGTTCATACAAGCATCTACAAACATTTCAAGGAGTGGCAGACAACCTGTGATGGGCGGTAATTTA---------TTTCAAAATAATAATAT-TCACCTTATCA--------------------------------------------------------------------ATACTACTT----------------------------------------CATTTAC----------------------CTTGACAGATCTCGCCCTGCTAATATTGCACTTGATAGAATATTGGGAATGATATTGATGCTCATACTTTTCTCCCTAGCGACACAGCCGGGAGATTTTCTCATTCAAATATCCCACGTAAGTATTTT---------TATATATTTAAATATATAAAAT---------------AATTTA-----T---------AGTATATTGT--------GTTTACTTG-AA-------CATTAGTACGTTATTGATGAGTTATACAGCCTATTGAAGGTACTGGAAGGCAGTCCSizeHit CountTotal NormTotal
No Reads
droEug1
TTAAATATATTGCTGAAAATATATTTGTTAATAGTATAATGGTTCATACAACTATATATAAGCATTTTAAGGAATGGCAGTTAACGTGTGATAAAAGGTAAAATT-------AATTTAA--------------------GTCGA--------------------------------------------------TACT--AATTTACATTATTAAAATTT----------------------------------------CATTTAT----------------------GTTTTTAGATCTTGCCTGGCTAATATAGCACTTGATAGAATACTGGGGATTATACTAATGTTAATTCTTTTATCACTTGCGGCACAGCCGGGTGATTTTCTAATACAAATATCCCACGTAAGTATAAA---------ATC-------------GAAAATTCAAATTATT---------------------AGAGTAATATTA---------------CCTTT-TC-------TTATAGTACGTTATTGACGAATTATACATCCTATTGAAAGTATTAGAGGGCAGTCCSizeHit CountTotal NormTotal
No Reads
dm3
TCGAATATATGGCGGAAAATGTATTTATCAACAGCATTATGGTTCACACAACTATTTATAAGCATTTCAAGGAATGGCAGACAGCATGTGATAAAAGGTAGTTGG---------GTTAA--------------------ATCG----------------------------------------------A-TGATGCTAAATATCATATTACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTTCTTGATAGAATACTGGGGATTATATTGATGCTAATACTATTTACGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------CAAATTTGATTTTACA---------------------TATGTGACATTAACTT-------AT------TGC-TTATCTATTGTAGTACGTTATTGACGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................TTCAAGGAATGGCAGACAGCATGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010100100000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................TAGAATACTGGGGATTATATTGATGC...................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000011000000000000000010100000
..................................................................TCAAGGAATGGCAGACAGCATGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000
................................................................TTTCAAGGAATGGCAGACAGCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................TGTATTTATCAACAGCATTATGGTTCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTTCAAGGAATGGCAGACAGCATGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................ACTGGGGATTATATTGATGCTAAT...............................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000
.................................................................TTCAAGGAATGGCAGACAGCATGTGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGTAGTACGTTATTGACG.....................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ATAGAATACTGGGGATTATATTGATGC...................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAAAGTATTAGAGGGCAGT..2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAATTGTACGGCCTGTTGAAAG................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAAAGTATTAGAGGGCAGTCC2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000
..........................................................TAAGCATTTCAAGGAATGGCAGACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGTACGGCCTGTTGAAAG................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGACGAATTGTACGGCCTGTTGAAA.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGGAATGGCAGACAGCATGTGATAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TATAGTTCTTGATAGAATACTGGGGAT..............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................TGGGGATTATATTGATGCTAA................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTCTTGATAGAATACTGGGGATTATAT.........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGAATTGTACGGCCTGTTGAAAG................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTCACACAACTATTTATAAGCATTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTACGGCCTGTTGAAAG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACGGCCTGTTGAAAGT...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TATAAGCATTTCAAGGAATGGCAGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................TTTATAAGCATTTCAAGGAATGGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................GATAAAAGGTAGTTGG---------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------TATGTGACATTAACTT-------AT------TG.................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAACTT-------AT------TGC-TTATCTATTGTAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATAAGCATTTCAAGGAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ACTGGGGATTATATTGATGCT..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TCTTGATAGAATACTGGGGATTATAT.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................GCTTGCCACACAGCCTGGT...................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CATTTCAAGGAATGGCAGACAGCATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................TTGCCACACAGCCTGGTGATTTTCTAA.........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TAAGCATTTCAAGGAATGGCAGACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TACTGGGGATTATATTGATGCTAATAC.............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................TATAAGCATTTCAAGGAATGGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AGGTAGTTGG---------GTTAA--------------------ATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................TTCAAGGAATGGCAGACAGCATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................TTTCAAGGAATGGCAGACAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGGCCTGTTGAAAGTATTAGAG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AATACTGGGGATTATATTGATGCTAA................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GATAGAATACTGGGGATTATATTGATG....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................CAAGGAATGGCAGACAGCATGTGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTCTTGATAGAATACTGGGGA...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TAGTTGG---------GTTAA--------------------ATCG----------------------------------------------A-TGATT.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACGGCCTGTTGAAAGTG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................GCTTGCCACACAGCCTGGTGAT................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ACTGGGGATTATATTGATGCTAATAC.............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................TATC----------------AAGCAGATCTCGACCGGCTAATA.......................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................AGAATACTGGGGATTATATTGATGCT..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TATTTACGCTTGCCACACAGC........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATATGGCGGAAAATGTATTTATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGAATATATGGCGGAAAATGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TGATAGAATACTGGGGATTATATTGAT.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................ATTTCAAGGAATGGCAGACAGCATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTACGGCCTGTTGAAAG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AATGGCAGACAGCATGTGATAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CAGCCTGGTGATTTTCTAATA.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TATTACTT-----------------AG----------------------------TTTCTATC----------------..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CTTGATAGAATACTGGGGATTAT...........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GTTAA--------------------ATCG----------------------------------------------A-TGATGCTGGC........................................................................................................................................................................................................................................................................................................................................................................................20110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
droSim2
TCGAATATATGGCAGAAAATGTATTTATCAACAGAGTTATGGTTCACTCAACTATTTATAAGCATTTCAAGGAATGGCAGACTGCATGTGATAAACGGTATTATT-------A--TTAT-TACTATTATTATAACT------------A---------------------------T--------------------------------AACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTACTTGATAGAATACTGGGGATTATACTGATGCTAATACTATTTTCGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------CAAATTTGATTTTAAA---------------------TATGTGACATTAACT----------------TGC-TTATCTATTGTAGTACGTCATTGACGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCCTGTTGAAAGTATTAGAGGGC.....2712.00200000011000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGAATTGTACGGCCTGTTGAAAG................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGGCCTGTTGAAAGTATTAGAGGG......2811.00100000010000000000
....................................................................AAGGAATGGCAGACTGCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCTGTTGAAAGTATTAGAGGGCAG...2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGACGAATTGTACGGCCT........................2111.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGGCCTGTTGAAAGTATTAGA.........2511.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCTGTTGAAAGT...............1611.00100000001000000000
droSec2
TCGAATATATGGCGGAAAATGTATTTATCAACAGAGTTATGGTTCACTCAACAATTTATAAGCATTTCAAGGAATGGCAGACTGCATGTGATAAAAGGTATTATT-------A--TTAC-TATTA------TAACT------------A---------------------------T--------------------------------AACTATTACTT-----------------AG----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGTACTTGATAGAATACTGGGGATTATATTGATGCTAATACTATTTTCGCTTGCCACACAGCCTGGTGATTTTCTAATACAAATATCTCATGTATGTCCGCC---------ATA-------------AAAATTTGATTTTACA---------------------TATGTGCCATTAACT----------------TGC-TTATCTATTGTAGTACGTCATTGATGAATTGTACGGCCTGTTGAAAGTATTAGAGGGCAGTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................TAGAATACTGGGGATTATATTGATGCT..................................................................................................................................................................................................................................2711.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGAATTGTACGGCCT........................2111.0010100
droYak3
TTGAATATATTGCTGAAAATGTATTTGTTAACAGCATTATGGTTCATACAACTATTTATAAGCATTTTAAGGAATGGCAGGCAGCATGTGATAAAGGGTAATTAA---------ACTAA--------------------ATCG----------------------------------------------A-TGGTACTACATTTCATATTACTATTACTA-----------------GT----------------------------TTTCTATC----------------ACGCAGATCTCGACCGGCTAATATAGCACTTGATAGAATACTGGGGATTATATTGATGTTAATACTATTTTCACTTGCCACACAGCCAGGTGATTTTCTAATACAAATATCTCATGTAAGTCCGCC---------TTC-------------CAAATTCGTTTG-------------------------TATTTGACATTTATT----------------TGC-TGATTTATTCTAGTATGTCATTGACGAATTGTACAGCCTGTTGAAAGTATTAGAGGGCAGCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........GCTGAAAATGTATTTGTTAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................CTTGATAGAATACTGGGGATTATATT........................................................................................................................................................................................................................................2611.00100000010000
droEre2
TCGAATATGTTGCGGAAAATGTAATTGTCAACAGTATTATGGTTCATACAACTATTTATAAGCATTTCAAGGAATGGCAAATAGCATGTGATAAAAGGTAATTGA---------GCTAA--------------------ATCG----------------------------------------------AATGGTACC--ATTTCATATTACTATTACTA-----------------GT----------------------------TTTCTATC----------------AAGCAGATCTCGACCGGCTAATATAGCACTTGATAGAATAATGGGAATTATATTGATGCTAATACTATTTTCACTTGCCACACAGCCAGGTGATTTTCTAATACAAATATCTCATGTAAGTCCGCC---------ATC-------------CAAATTTGATTT-------------------------GATATGACATTTATG----------------TGC-TTATTTATTTCAGTATGTCATTGACGAATTATACCGGCTGTTGAAAGTATTAGAGGGCAGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 04:55 AM