dvi_13440

Name	Class	Family	Strand
(TA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGTACGCAAAACAGGCTCCTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCTAACTTGCTCTCTATGCTCCCTTACCCTGCAATGCACCTACTGATGTAGGTGCTGCTCTAGCACGCTCTAGCTAATGCTGGACTAGATAAACATTTGCATTAACCTAACTGGCATATATATCTGTATATATCTGTATAAATGTATATGTTTATATATTTATAATACATATATATATGCATATATGACTATGTGTA ************************************************.(((((((...........((((...........(((..((((((((....)))))))))))(((((.....((((((....))))))))))).........)))).........)))))))(((((.((((((....)))))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060684 140x9_0-2h_embryos_total
................TCCTTCATCTACGAGGACTTTATGCC.................................................................................................................................................................................................................	26	0	1	1.00	1	1	0
....................................................................................GCAAGGCACGTACTGATG.....................................................................................................................................................	18	2	8	0.13	1	0	1

CCATGCGTTTTGTCCGAGGAAGTAGATGCTCCTGAAATACGGGTGGCTACCATACGATTGAACGAGAGATACGAGGGAATGGGACGTTACGTGGATGACTACATCCACGACGAGATCGTGCGAGATCGATTACGACCTGATCTATTTGTAAACGTAATTGGATTGACCGTATATATAGACATATATAGACATATTTACATATACAAATATATAAATATTATGTATATATATACGTATATACTGATACACAT ************************************************.(((((((...........((((...........(((..((((((((....)))))))))))(((((.....((((((....))))))))))).........)))).........)))))))(((((.((((((....)))))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060670 9_testes_total	SRR060676 9xArg_ovaries_total	SRR060672 9x160_females_carcasses_total	GSM1528803 follicle cells	M047 female body	V047 embryo	V116 male body
.................................................................................................................................................................ATTGATCGTATATATAGAGAT.....................................................................	21	2	1	1.00	1	0	0	1	0	0	0	0	0
..........................................................................................................ACGGCGAGATTTTGCGAGATC............................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................CTCGGCGAGAGCGTGCGAGATC............................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................GAGATCGTGCGAGATCGATTACGACC..................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
....................AGTAGAAGCTCCAGAGATA....................................................................................................................................................................................................................	19	3	13	0.08	1	0	0	0	1	0	0	0	0
...........................................................................................................GGGCGAGTTCGTGCGAGAT.............................................................................................................................	19	3	15	0.07	1	1	0	0	0	0	0	0	0
.........................................................................................................................................TGATCTATTCGTAAGCGAAA..............................................................................................	20	3	16	0.06	1	0	0	0	0	1	0	0	0
.......................................................................................................TCCACCACGAGATGGTGA..................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................AAATACAAATATATAAATA..................................	19	1	20	0.05	1	0	0	0	0	0	1	0	0
...........................................................................................................CGACGAAAGCGTGCGAGTTC............................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0	0	0
.........................................................ATGAACGAGAGGTACGATG...............................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:7348846-7349096 -	dvi_13440	G-----------GTACGCAAAACAGGCTCCTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCTAACT-TGC---TCTCTATGCTCCCTTACCCTGCAATGCACCTACTGATGTAGGTGCTGCTC--TAGCACGCTCTA-----------------GCTAATGCTGGACTAGATAAACATTTGCATTAACCTAACTGGCATAT------------------------------------------------------------------------------------------------ATATCTGTAT--AT--------A-----------------------------TCTGTATAAATGTA--TATGTTTATATATTTAT----------------------------------AATACATATATATATGC-------ATATATGACT--ATGTGTA
droMoj3	scaffold_6500:2438684-2438823 +		C-----------CGTTGCAGCAGCTG-------------------------------------------------------------------------------------------------CATCCA--A-----------ACACTCCACCTATGCTCGCTAGCTCTACTCTATCAT----AC------------------ATAT------------------------------------------------------------------------------------------------ATATATA--T--AT--------A-----------------------------TATAAATATATATA--TATACATGTATATATAT----------------------------------CATATTTATATATATAT-------ATATATATTT--ATTTATT
droGri2	scaffold_14853:8937667-8937913 -		G-----------GTGCGCAAAACGGGCTCCTTTATCTACGAGGACTTTATGCCCACCGATGGTATGCTTTCTATGC---TCTCTATGCTCCCTGTCTATGCAATCAA--TACTGCTCTAGGTACTGCTCTCTAGCACGCTCCA--G-----CCAATGC-----TGGTCTAGTCAATCAA----TC------------------ACAC---------------------------------------------------ACGCATTCCAGCAACCAGTAACCAGTAACCAGTAACCACCACCACCCGTCCCGCTCCCTTTCCC----------------CCAACCAAC---------------------------------------------------------------------------------------------------AAAATAAATA--GCCAAAT
droWil2	scf2_1100000004963:3135375-3135522 +		T-----------CTATCTAACTC--TATAAATTATATACACATACTTTT-----------------------------------------------------------------------------------------------------------------------------------------ACATATACCT----ACCCCAT------------------------------------------------------------------------------------------------ATATATATATATCAATCTATATA-----------------------------TATATATATATATA--TATATATATATATAAAC----------------------------------AATATATATATATATAAACAAAGCAAAAAAAATC--TTCTATA
dp5	XL_group1a:1117270-1117376 -		G-----------GTACGCAAGACGGGCTCATTTATCTACGAGGACTTCATGCCCACCGATGGTATGCAA-CT-TGC---TCTCTATGCTCCCATGCTC-------TA--TGCAGCTGTAGGTACTACCC--G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG
droPer2	scaffold_70:271225-271327 -		T-----------AAATAAATATATACATGATACATATATACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACT--T--AT--------A-----------------------------TTTATATATATATA--TATATATATATATATAT----------------------------------AATATATATATATTTAT-------ATATA---TT--ATGTAGA
droAna3	scaffold_13117:1924606-1924712 -		G-----------GTGCGCAAGACGGGCTCCTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-CT-TGCCACTCACTATGCTCCCATGCTC-------TA--TGCAGCTGTAGGTACTACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395150:87-259 -		C-----------TCCCCTACCCCGCTATAT----------------------------------------------------------------------------ATGTATATATATGGGA------------TATACATAT--------------------------------------------------------------GTATATGCTGAAAAAAAAGAACATTTTGTTTTTTTTTGTTATATTTGAGATAT---------------------------------------------ATATATA--T--AT--------A-----------------------------TATATATATATATA--TATATTAGTATATATAT----------------------------------ACTATATATATATATAT-------ATATATATAT--ATATATA
droKik1	scf7180000301930:38655-38753 +		A-----------TACACATATACATTAATA--TATTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--AT--------A-----------------------------TATATATATATATA--TATATATATATATATAT----------------------------------TATATATATATATATAT-------ATATATATAT--ATATATA
droFic1	scf7180000454116:158840-158943 +		G-----------GTGCGCAAGACGGGGTCGTTCATCTACGAGGACTTCATGCCCACCGATGGTATGCCA-CT-TGC---TCACTATCCTCCCATGCTC-------TA--TTCAGCTGTAGGTACTACCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491087:1117773-1117940 -		CTGCGATGTTTCGCCTGATGGGCATAAATTTTGATTTATGAAGAG-----CCGCAGCCATACTACATA-----AAC---ACATAAAATACCCATACAT-------A------------------------------------------------------------------------------------------------AATAT------------------------------------------------------------------------------------------------ATATATATAT--AT--------A-----------------------------TATATATATATATA--TATATATATATATATAT-----------------------------------ATATATATATATATAT-------GTATATTAAC--GTACATA
droRho1	scf7180000778730:66015-66124 -		G-----------GTGCGCAAGACGGGATCGTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-CT-TGC---TCATTATGCACCCATGCTC-------TA--TGCAGCTGTAGGTACTACCC--C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC
droBia1	scf7180000300750:1434-1536 -		T-----------ATATAAATATTTATATATTA-TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------------------------------------------------------------------TTATATA--T--AT--------A-----------------------------TTTATATATATATATTTATATT--TATATATAT----------------------------------ATTATATATATTTATAT-------ATATATATTT--ATTTATA
droTak1	scf7180000415324:134164-134283 +		G-----------GTGCGCAAGACGGGATCATTCATCTACGAGGATTTTATGCCCACTGATGGTATGCAA-TT-TGC---TCACTATGCTCCCATGCTC-------TA--TTCAGCTGTAGGTACTACCC--A-----------AATTTGCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTA
droEug1	scf7180000408973:62402-62526 +		A-----------TTAGTTAAATATATATAGTTAACATATATATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------ATATAGT------------------------------TATATATATACTATATATATATATATATA--TATAGTTATATATAGTT----------------------------------AACATATATATGTATAC-------GTATATAAGTATATATAGA
dm3	chrX:21896062-21896161 +		G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAACTGTAGGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:20416610-20416888 +	dsi_19059	G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AAACCACACCACTTCCCGACCATTCTGCACATGAAA----TGGATACTATCTAGATTGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGTTACTAAGCTGCGTGTATA------TATTAATTTGTATACTCGT---------------------------------AGGAAGGGTATACTAGATTCTTTGAAAAGTATGTAACAGACAGAAGGAAGC-------GTTTCCGACT--ATATAAG
droSec2	scaffold_55:52754-53036 +		G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AAACCACACCACTTCCCGCCCATTCTGCACATGAAA----TGGATACTATTTAGATTGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGTTACTAAGCTGGGTGT--ACATATATATTAATTTTTATACTCGT---------------------------------AGGAAGGGTATACTAGATTCTTTGAAAAGTATGTAACAGACAGAAGGAAGC-------GTTTCCGACT--ATATAAG
droYak3	X:21339557-21339808 +		G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCTCTATGCTCCCATTTTT-------AA--TGCAGCTGTAGGTACTACCT--A-----------AAACCCCTCCACTTCCGGCCCATTCTGCACAAGAAA----TGGATAGTATCTAGATAGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGATACATATCCACGTATATATTTGTTTTTTAATTTATGAAAT-----------------------------------------GGGT-TACTAAATTGGTTTTAAATTGCAT-------------------------------ATC--ATGTGGA
droEre2	scaffold_4690:18271724-18271939 +		G-----------GTGCGGAAGACGGGATCTTTTATCTACGAGGACTTCATGCCCACCGATGGTATGCAA-TT-TGC---TCACTATGTTCCCATTTT--------AA--TGCAGCTCCACTTCCC-----------------------------------GCCCATTCTGCACGAGAAA----TGGGTAGTATCTAGGCAGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGATACTTAGCCACGTATATACATGTTTTTTAATTTATGAAATGGT---------------------------------TCATAG-----------------------------------------------------GGTATGGTT--GTACTTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

G-----------GTACGCAAAACAGGCTCCTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCTAACT-TGC---TCTCTATGCTCCCTTACCCTGCAATGCACCTACTGATGTAGGTGCTGCTC--TAGCACGCTCTA-----------------GCTAATGCTGGACTAGATAAACATTTGCATTAACCTAACTGGCATAT------------------------------------------------------------------------------------------------ATATCTGTAT--AT--------A-----------------------------TCTGTATAAATGTA--TATGTTTATATATTTAT----------------------------------AATACATATATATATGC-------ATATATGACT--ATGTGTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................TCCTTCATCTACGAGGACTTTATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C-----------CGTTGCAGCAGCTG-------------------------------------------------------------------------------------------------CATCCA--A-----------ACACTCCACCTATGCTCGCTAGCTCTACTCTATCAT----AC------------------ATAT------------------------------------------------------------------------------------------------ATATATA--T--AT--------A-----------------------------TATAAATATATATA--TATACATGTATATATAT----------------------------------CATATTTATATATATAT-------ATATATATTT--ATTTATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

G-----------GTGCGCAAAACGGGCTCCTTTATCTACGAGGACTTTATGCCCACCGATGGTATGCTTTCTATGC---TCTCTATGCTCCCTGTCTATGCAATCAA--TACTGCTCTAGGTACTGCTCTCTAGCACGCTCCA--G-----CCAATGC-----TGGTCTAGTCAATCAA----TC------------------ACAC---------------------------------------------------ACGCATTCCAGCAACCAGTAACCAGTAACCAGTAACCACCACCACCCGTCCCGCTCCCTTTCCC----------------CCAACCAAC---------------------------------------------------------------------------------------------------AAAATAAATA--GCCAAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................GGCTCCTTTATCTACGAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

droWil2

T-----------CTATCTAACTC--TATAAATTATATACACATACTTTT-----------------------------------------------------------------------------------------------------------------------------------------ACATATACCT----ACCCCAT------------------------------------------------------------------------------------------------ATATATATATATCAATCTATATA-----------------------------TATATATATATATA--TATATATATATATAAAC----------------------------------AATATATATATATATAAACAAAGCAAAAAAAATC--TTCTATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

G-----------GTACGCAAGACGGGCTCATTTATCTACGAGGACTTCATGCCCACCGATGGTATGCAA-CT-TGC---TCTCTATGCTCCCATGCTC-------TA--TGCAGCTGTAGGTACTACCC--G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................ACGGGCTCATTTATCTACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................ATGCAA-CT-TGC---TCTCTATGCTCCCAT...................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-----------AAATAAATATATACATGATACATATATACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACT--T--AT--------A-----------------------------TTTATATATATATA--TATATATATATATATAT----------------------------------AATATATATATATTTAT-------ATATA---TT--ATGTAGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

G-----------GTGCGCAAGACGGGCTCCTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-CT-TGCCACTCACTATGCTCCCATGCTC-------TA--TGCAGCTGTAGGTACTACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................ATCTACGAGGACTTTATGCCCACCGATG....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droBip1

C-----------TCCCCTACCCCGCTATAT----------------------------------------------------------------------------ATGTATATATATGGGA------------TATACATAT--------------------------------------------------------------GTATATGCTGAAAAAAAAGAACATTTTGTTTTTTTTTGTTATATTTGAGATAT---------------------------------------------ATATATA--T--AT--------A-----------------------------TATATATATATATA--TATATTAGTATATATAT----------------------------------ACTATATATATATATAT-------ATATATATAT--ATATATA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A-----------TACACATATACATTAATA--TATTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--AT--------A-----------------------------TATATATATATATA--TATATATATATATATAT----------------------------------TATATATATATATATAT-------ATATATATAT--ATATATA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G-----------GTGCGCAAGACGGGGTCGTTCATCTACGAGGACTTCATGCCCACCGATGGTATGCCA-CT-TGC---TCACTATCCTCCCATGCTC-------TA--TTCAGCTGTAGGTACTACCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGCGATGTTTCGCCTGATGGGCATAAATTTTGATTTATGAAGAG-----CCGCAGCCATACTACATA-----AAC---ACATAAAATACCCATACAT-------A------------------------------------------------------------------------------------------------AATAT------------------------------------------------------------------------------------------------ATATATATAT--AT--------A-----------------------------TATATATATATATA--TATATATATATATATAT-----------------------------------ATATATATATATATAT-------GTATATTAAC--GTACATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G-----------GTGCGCAAGACGGGATCGTTCATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-CT-TGC---TCATTATGCACCCATGCTC-------TA--TGCAGCTGTAGGTACTACCC--C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-----------ATATAAATATTTATATATTA-TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------------------------------------------------------------------TTATATA--T--AT--------A-----------------------------TTTATATATATATATTTATATT--TATATATAT----------------------------------ATTATATATATTTATAT-------ATATATATTT--ATTTATA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G-----------GTGCGCAAGACGGGATCATTCATCTACGAGGATTTTATGCCCACTGATGGTATGCAA-TT-TGC---TCACTATGCTCCCATGCTC-------TA--TTCAGCTGTAGGTACTACCC--A-----------AATTTGCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A-----------TTAGTTAAATATATATAGTTAACATATATATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------ATATAGT------------------------------TATATATATACTATATATATATATATATA--TATAGTTATATATAGTT----------------------------------AACATATATATGTATAC-------GTATATAAGTATATATAGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAACTGTAGGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................TGCTCCCATTTTA-------AA--TGCAA...............................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAGGATCATTTATCTACGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACAGGATCATTTATCTACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACAGGATCATTTATCTACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTTATCTACGAGGACTTTATGCCCACCGA......................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACAGGATCATTTATCTACGAGGACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TACGAGGACTTTATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................TCATTTATCTACGAGGACTTTATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATCATTTATCTACGAGGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGAAAGACAGGATCATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AAACCACACCACTTCCCGACCATTCTGCACATGAAA----TGGATACTATCTAGATTGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGTTACTAAGCTGCGTGTATA------TATTAATTTGTATACTCGT---------------------------------AGGAAGGGTATACTAGATTCTTTGAAAAGTATGTAACAGACAGAAGGAAGC-------GTTTCCGACT--ATATAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGAA............................	25	10	10.20	102	0	0	0	0	0	0	39	41	17	3	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGA.............................	24	10	8.90	89	0	0	0	0	0	0	37	27	17	4	2	0	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------GTT................	25	9	4.78	43	0	0	0	2	0	0	0	3	1	1	36	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGAAAAGTATGTAACAGACAGA.................................	27	1	4.00	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------GT.................	24	10	3.40	34	0	0	0	1	0	8	0	0	0	0	25	0	0	0	0	0	0
........................................................................................TCCCATTTTA-------AA--TGCAGCTGTAGGTACT....................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
................................................................................................TA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AAAC..............................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAGTATGTAACAGACAGAAGGA.............................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................TTA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AA................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................CATTTTA-------AA--TGCAGCTGTAGGTACT....................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
................................TATCTACGAGGACTTTATGCCCACCGA......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................TCCCATTTTA-------AA--TGCAGCTGTAGGT.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TATTAATTTGTATACTCGT---------------------------------AGGA.........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................TACGAGGACTTTATGCCCACCGATGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................ATCTACGAGGACTTTATGCCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTA-------AA--TGCAGCTGTAGGTACTTCC.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................TTA-------AA--TGCAGCTGTAGGTACTT...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TCCCATTTTA-------AA--TGCAGCTGTAGGTACTT...................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAGTATGTAACAGACAGAAGGAA............................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ATA------TATTAATTTGTATACTCGT---------------------------------A............................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGATACTATCTAGATTGCCAAAC------------------------------------------------------------------------------------------------ATA...............................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................ATCTACGAGGACTTTATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGAAG...........................	26	9	1.00	9	0	0	0	0	0	0	2	2	0	0	5	0	0	0	0	0	0
.......................................GAGGACTTTATGCCCACCGATGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TA-------AA--TGCAGCTGTAGGTA......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCTGCACATGAAA----TGGATACTA.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................AGGATCATTTATCTACGAGGACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................GACAGGATCATTTATCTACGAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACAGGATCATTTATCTACGAGGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCCCGACCATTCTGCACATGAAA----TGGA......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................TCTGCACATGAAA----TGGATACTATCTA.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................TTTATCTACGAGGACTTTATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AATTTGTATACTCGT---------------------------------AGGAAGG......................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................GCAGCTGTAGGTACTTCCT--A-----------AAACCAC...........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGAAA...........................	26	14	0.86	12	0	0	0	0	0	0	3	0	9	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------G..................	23	11	0.82	9	0	0	0	1	0	0	0	0	0	0	7	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGTATGTAACAGACAGAAGGA.............................	26	8	0.50	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAGTATGTAACAGACAGAAGGAA............................	28	5	0.40	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGAAAAGTATGTAACAGA.....................................	23	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCTTTGAAAAG................................................	24	7	0.29	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCTTTGAAAAG................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGC-------GTTTCCGACT--.......	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCTTTGAAAAGTA..............................................	27	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------...................	22	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGC-------GTT................	17	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGACAGAAGGAA............................	21	12	0.17	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGACAGAAGGAA............................	19	13	0.15	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAA............................	20	13	0.15	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGA.............................	19	14	0.14	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGAT............................	25	15	0.13	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGACAGAAGGAAGC-------GTTT...............	25	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTATGTAACAGACAGAAGGAAG...........................	27	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGACAGAAGGAAGC-------GTTTCCGA...........	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGTATGTAACAGACAGAAGGAA............................	27	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------GTTT...............	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTATGTAACAGACAGAAGGA.............................	25	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC-------GTTTC..............	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGACAGAAGGAAGC-------GTTT...............	24	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGAAGC-------GTTTCCGA...........	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGACAGAAGGAAGC-------...................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGAAGC-------GTT................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCTTTGAAAAGTAT.............................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGC-------GTTTCCGACT--.......	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGACAGAAGGAAGC-------GT.................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGACAGAAGGAAGC-------GT.................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCTTTGAAAAGTA..............................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGGAAGC-------GTTT...............	17	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGG..............................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCTTTGAAAAGT...............................................	21	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGAAGC-------GT.................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCTTTGAAAAGT...............................................	20	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCTTTGAAAAG................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAGAAGGAAGC-------GT.................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAGAAGGAAGC-------GT.................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGC-------GT.................	16	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCTTTGAAAA.................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGGAAGC-------GT.................	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGACAGAAGGA.............................	17	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCTTTGAAA..................................................	17	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGA.............................	15	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGA.................................	20	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAG...............................	17	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGC-------GTTTCCGA...........	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGTATGTAACA.......................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGACAGAAGGAATA-------...................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCACTTTGCTCCCATTTTA-------AA--TGCAGCTGTAGGTACTTCCT--A-----------AAACCACACCACTTCCCGCCCATTCTGCACATGAAA----TGGATACTATTTAGATTGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGTTACTAAGCTGGGTGT--ACATATATATTAATTTTTATACTCGT---------------------------------AGGAAGGGTATACTAGATTCTTTGAAAAGTATGTAACAGACAGAAGGAAGC-------GTTTCCGACT--ATATAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................ATTTTA-------AA--TGCAGCTGTAGGTACTT...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..........................................GACTTTATGCCCACCGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.......................................GAGGACTTTATGCCCACCGATGGGCG................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.....................................ACGAGGACTTTATGCCCACCGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCTTTGAAAAGT...............................................	21	8	0.25	2	0	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGC-------GTTTCCG............	21	6	0.17	1	0	1	0	0

droYak3

G-----------GTGCGAAAGACAGGATCATTTATCTACGAGGACTTTATGCCCACCGATGGTATGCAA-TT-TGC---TCTCTATGCTCCCATTTTT-------AA--TGCAGCTGTAGGTACTACCT--A-----------AAACCCCTCCACTTCCGGCCCATTCTGCACAAGAAA----TGGATAGTATCTAGATAGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGATACATATCCACGTATATATTTGTTTTTTAATTTATGAAAT-----------------------------------------GGGT-TACTAAATTGGTTTTAAATTGCAT-------------------------------ATC--ATGTGGA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

G-----------GTGCGGAAGACGGGATCTTTTATCTACGAGGACTTCATGCCCACCGATGGTATGCAA-TT-TGC---TCACTATGTTCCCATTTT--------AA--TGCAGCTCCACTTCCC-----------------------------------GCCCATTCTGCACGAGAAA----TGGGTAGTATCTAGGCAGCCAAAC------------------------------------------------------------------------------------------------ATATCTAGATACTTAGCCACGTATATACATGTTTTTTAATTTATGAAATGGT---------------------------------TCATAG-----------------------------------------------------GGTATGGTT--GTACTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................TACGAGGACTTCATGCCCACCGATGGT..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	4
.......................................................................................................................................................................................................................................................................................................................................................TTATGAAATGGT---------------------------------TCATAG-----------------------------------------------------GGTATGGT..........	26	1	3.00	3	0	0	0	0	0	0	3
.............................................................................................................................................................................................................................................................................................................................................................AATGGT---------------------------------TCATAG-----------------------------------------------------GGTATGGTT--GTACT..	26	1	1.00	1	1	0	0	0	0	0	0
..............................TTTATCTACGAGGACTTCATGCCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................CAAAC------------------------------------------------------------------------------------------------ATATCTAGATACTTAGCCACG.............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................GGTAGTATCTAGGCC.........................................................................................................................................................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	1

dvi_13440

scaffold_12970:7348896-7349046 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads