dvi_13430

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTCAAGTCTCTAGCTCTTAAAGCTACGAACATCGACTGGGATGTTGGTGCTGGTCAAGAATAAATACACTCTTTTTGGTGTCGGAGAAGCCTCCTTCTGCCTGTAACATGCATTTTCACAAGCCCAATATGCTCTTTTTGCAGACTAATAAAATGAATTTGCCTGATTTAATCGCTACTTGCTCGTACTCATCCTTTGCAGGGCTTTGATTATGACGACGATGATGGTACAGTGTCTGCAGTGACAACACC ************************************************.((.((((.......(((((......))))).(((((((....))))).)).....((.(((..((((...........(((.......)))...........))))..))).))............))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060670 9_testes_total	V053 head	SRR060679 140x9_testes_total	SRR060661 160x9_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	V116 male body	V047 embryo	M027 male body	M028 head	GSM1528803 follicle cells	SRR060663 160_0-2h_embryos_total	SRR060675 140x9_ovaries_total	SRR060676 9xArg_ovaries_total
.....................................................................................................................................................................................................CGATGGCTTTGATTATGACGACGAT.............................	25	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGATGGCTTTGATTATGACGACGAT.............................	25	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGTAACAGCCATTTTCACGAGC................................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCGATGGCTTTGATTATGACGACGATG............................	27	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CGGGGCATTGATAATGACGACG...............................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATGACAACCATGATAGTACAG...................	21	3	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................GACTGGGATGATGGTACT........................................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CGCTGATGGTACTGTGTCT..............	19	2	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GACGACGATGACGGTACC....................	18	2	13	0.15	2	0	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................CAGGTCATCGATTATGACGA.................................	20	3	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0	0	0
............................ACATCGACGGGGAGGTTGGC...........................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................ATCGACTTGGATGTTTGT...........................................................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................CATCGATAGGGCTGTTGGTGCT........................................................................................................................................................................................................	22	3	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................GGACGATGATGATGGTAC.....................	18	2	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AATCGGAATTTGCCTGATT...................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0
TTCAAGTCTCTAGCTCTAAA.......................................................................................................................................................................................................................................	20	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................TATGATGACGAGGATGGT.......................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................GGCCTTTGATGATGCCGACG...............................	20	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0
TTCAAGTCTCTAGCTCTTAAAG.....................................................................................................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:7334747-7334997 -	dvi_13430	TTCAAGTCTCTAGCTCTTAAAGCTACGA----------------------------------------------------ACATCGACTGGGATGTTGGTGCTGGTCAAGAATAAATACACTCTTTTTGGTGTCGGAGAAGCCTCCTTCTGCCTGTAACATGCA-------TTTTCACAAGCCCAATATG-----------CTCTTTT------------------------------------TGCA--GACTAATAAAA----------------------------------------------------T------------------------------------------------GAATTTGCCTGATTTAATCGCTACTTGCTCGTACTCATC--------------------CT------------------TTGCAGGGCTTTGATTATGAC---------------GACGATGATG---G-T-A------------------CAGTGTCTGCA----GTGACAACACC
droMoj3	scaffold_6500:30744933-30745205 -		TTGAGGTCTCTAGCTCTTATATGTTCTGAAATCGACGCGTTCATACATACGGACA------------GACGGACAGGGCAAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATATATAC--TTTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATA-----------CCCTGAT------------------------------------TTCC--CATTGAAAATAGGTTCAG----------------------------------------C-GTATAAAA--AGCG--TATTTCAAATAC------------------------AA--------G--AGACTTGTGCTTA-----------GG--------------------CC------------------ATTCACGAATTTGA--------------------------------------------------------------------ATGTTATGATCACGAT
droGri2	scaffold_14853:9174088-9174307 +		TTGAAGTCTTTAT-------------------------------------------------------------------ATATCGAATCGGCTCTTGTTCCTGATCAAGAATATATATAC--TTTATGGGATCAGAGATGCTTCCTTCTGCATGTTATATCCA-------TTTGCACAAAACCATTTAA-----------CTCATTT------------------------------------TTAC----CCATTTTCAGGTCATA----------------------------------------CAAATGCAT-------------------------------------------------TTGCATT--------------C----------------G------------------------------------------------------GCT---------------GAAATTGAAGTTGACCTAATTTCGCATTGTGTGATAATCCTTTGGGA----AGGATTTGATT
droWil2	scf2_1100000004963:257967-258183 +		A----------------------------------------------------------------------------------TCGACTCGGTTGTTGATCCTGATCAAGAATATATATAC--TTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATA-----------CCATTTC------------------------------------ACCC--TATGGGTGTATGGTATAA----------------------------------------AAACAGTG----------CAGAACAAATCACAT---------------------GAATTCGCT----------------CGCTCATACGCATAGTGCGCG-CTG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------AAACGCTT----------------GC
dp5	Unknown_singleton_2012:417-636 +		A----------------------------------------------------------------------------------TTGACTCGGATATTGATGCTGATCAAGAATATATATAC--TTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATATGTATGTAGCACTCAT--------------------------------------------TTTGAGTATCGGGTATAAAAACCTACTATTCAACCCTTTTACACACATTTTGCATGGATTATATGAAC--ATTT-----------------------------------------------------------------------------------------------------------------------------------------T---------------TACAGTCATT---T-T-G------------------CAGTTTTTACA--------------G
droPer2	scaffold_1360:537-762 +		A----------------------------------------------------------------------------------TCGACTCGGCTATTGATGCTGATCAAGAATATATATAC--TTTATGGGGTCAGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATA-----------CCCCAAT------------------------------------ACTCATTTTGAGTATCGGGAATAA----------------------------------------AAAGAC---T--CCCT------------------------------------------------GTTTTGCTCACT----------------------GGTCATTGGAATTTCGTTAGCAGCATTAATTTC--------------------------------------CATGGTAGC------G-G------------------CAGCGTTAGCA----GAAAGACCAAC
droAna3	scaffold_12948:543915-544045 +		TTCACGCCTTCA-----------------------------------TACGGA--------------------CATGACTATATCGACTCTGCTGTTGATGCTGATCAAGAATAT--ATAC--TTTATGGTGTCGGAGATAATTCCTTCTCCTTGTTAAATAAA-------TTCAAACAAATACAAAATA-----------CCCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395906:3043-3222 +		CTCTCAG-----------------------ATCCA--CGT----ATATACGGACA------------G---------------ACGACTCTGATGTGGATGCTGTTCATGTATTTATATAC--TTTATGAGGTCGGAGATGATTCCTTCTCTATGTTACATACA-------TTAACACGACTACAATATA-----------CCCTTGT------------------------------------ACTT--AACGAGTAACGGGTATAA----------------------------------------TAAAAC------------------------------------------------AA--------A--GTCG------------------------------------------------------------------------TCGATTCTAGT---------------C------------------------------------------------------------G
droKik1	scf7180000302698:529103-529222 +		A----------------------------------------------------------------------------------TCGGCTCGGCTGGTAATGTCAATCAATAATAAACATAC--TTTGTTGGGTCAGAGAAGTCTCCTTCTGCATGTCACATATA-------TTTTCTTGTTACTAAGCTA-----------TCATTTT------------------------------------T----------------------------------------------------------------------------------------------------------------ATAGT-------------------------------------------------------------------------------------------ATAATAA------------------------------------------------------------------------------A
droFic1	scf7180000454116:171489-171546 +		CTTAT----CCA-----------------------------------CAGGGATT---------------------------------------------CGAGGAC------------------------GACGAGGATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A------------------CTTTGTCGGCG----GCGACAACACC
droEle1	scf7180000491277:82574-82737 +		TCCAAATCTCTAGCTTT-A------------------------------------------------------GATCTCTAGATCGACTCAACTATTGATCCTGATCCAGGGTATGTATAC--TTTATAGGGTCGGAAAAGCTTCCTTCTAACTGTTGCATACT-------TTTCAACGAATACAATGGA-----------CCCATTT------------------------------------ACTC--GACGAGTAACGGGTATGA----------------------------------------TTACTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droRho1	scf7180000761196:6009-6204 -		A----------------------------------------------------------------------------------TCGACTCGGCTAGTGATCCTGAACAAGAATAT--ATAC--TTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATACAATATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACAGGTATAA----------------------------------------ATACTGCACT--CATT-----------------CTTTACTGTA-----------------------------------------------------CAGG-CTA----------------------------------------TTCTATAGGCCA-------------GAAGAAGATA---G-C-A------------------CAACATTTTCA----GT--------G
droBia1	scf7180000301469:41756-41913 +		TC------TCTAGCTCTTATAGTTTCCGAG-------------------------------------------------------ATCTCAGCTAGTGATCCTGATCACGAATATATATA---TTTATGGTGTCAGAAACGCTTCCTTCTACCTGTTACATACT-------TTCCGACGAATCTAGTGTA-----------CCATTTT------------------------------------ACTC--TACGAGTAACGGGTATAA----------------------------------------ATTTA--------------------------------------------------------CCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droTak1	scf7180000415946:8038-8247 -		A--------------------------------------------------------------------------------TATCGACTCGGCTAGTGACCCTGATAAAGAATATATATTC--TTTATATGGTCGGAAACGCCTCCTTCTAGCTGTTACATACT-------TTTGCACGAATACAATATA-----------CCCTTTT------------------------------------ACTC--TATAAGTAACGGGTATAA----------------------------------------ATAGGGCGATTTC--------------------CTTGACTTTA-----------------------------------------------------G-GGTTAA--------------------------------------TTTTATTTTGAGTGTAGAGCTTCGTTTGAAGTTAGTG---G-T-A------------------CGG----------------GATCTGC
droEug1	scf7180000409554:3897580-3897749 -		A----------------------------------------------------------------------------------TCGACTTCGCTATTGATCCTGATCAAGAATATATATAC--TTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACGGGTATAA----------------------------------------TTATAC------------------------------------------------AA--------A--ATATTTGCTCTTTGTTTGCC-------------------------------------------------------------------------------------------------C-A------------------CAAAATTTGCA---------------
dm3	chr3L:18081021-18081191 +		TTTATA---------------GTTCCTGAGATCTCGAAGTTCATAAGCA----------------------------------CAGACAGACAGACTGATCCCGATCAAGAATA----TAC--TTTATATAGTCGAAAACGCTTCCTTCTGCCTGTTACATAAT-------TTTCAACGAATCTAGTTCA-----------CCCTTTT------------------------------------ACAC--TGCGATTAACGGGTATAA----------------------------------------TTAAT-----------------------------------------------------TTGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droSim2	3l:22389493-22389705 +		A----------------------------------------------------------------------------------TTGACTCGGCTATTTATCCTGATCAAGAATATATATAC--TTTATATGGTCGGAAACGCTTCATTCTGCCTGCTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTATA------------------------------------TCTA--TACGAGTAACGGGTATAA----------------------------------------TTATATAAAT--ATCTCT---------------CTTCCTTCTA-----------------------------------------------------A-AG----------------------------------------TTTTTAATTTTGAGCA-------------CAAAAAGTTG---GTA-AATTTCCCATAG--------------TGCA----ATGGAAACACC
droSec2	scaffold_48:149543-149734 +		A----------------------------------------------------------------------------------TCGACTCAGCTATTGATCCTGAACAAGAATATAAATAC--TTTATATATTCGGAAACGCCTCCTTCTGCCTGTTACATACT-------TTTTAA-GAATCTAGT--A-----------CCCTTTT------------------------------------ACTC--TACGACTAACGGGTATAA----------------------------------------AACTTATA----TACTTT---------------TTTCTTATTA-TTATTATATT------------------------------ATATT------------A-------------------------TATTCTTTATAGGG--TCGATTATAAC---------------G------------------------------------------------------------A
droYak3	4:692103-692275 -		A----------------------------------------------------------------------------------TCGACTCGGTTGTTGATCCTGATCAAGAATATATATAC--TTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACGAGTATGC----------------------------------------GTTGTAATTT--CTCTTT---------------TTTCTTTCTAATTTTTGTTTT-------------------------------------------------------------------------------------------GTTTTTG------------------------------------------------------------------------------A
droEre2	scaffold_4770:1900372-1900614 -		TTCAAGTTTCTAGCTTTTATAGTTCCTGAGATCGAGCCGTTCA----TACGGACAGACGGACGGACAGACGGACATGACCAGATCGAATCGTCTATTGATCCTGATCAATAATAT--ATAC--TTTATATGGTCGGAAACACTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTACA-----------GCCTTTTACCAAAGACACTAGAATAATTATTCGTTTTGCTTTTACTC--TACGATTGAAGTGTATTA----------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTCAAGTCTCTAGCTCTTAAAGCTACGA----------------------------------------------------ACATCGACTGGGATGTTGGTGCTGGTCAAGAATAAATACACTCTTTTTGGTGTCGGAGAAGCCTCCTTCTGCCTGTAACATGCA-------TTTTCACAAGCCCAATATG-----------CTCTTTT------------------------------------TGCA--GACTAATAAAA----------------------------------------------------T------------------------------------------------GAATTTGCCTGATTTAATCGCTACTTGCTCGTACTCATC--------------------CT------------------TTGCAGGGCTTTGATTATGAC---------------GACGATGATG---G-T-A------------------CAGTGTCTGCA----GTGACAACACC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
TTCAAGTCTCTAGCTCTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGAGGTCTCTAGCTCTTATATGTTCTGAAATCGACGCGTTCATACATACGGACA------------GACGGACAGGGCAAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATATATAC--TTTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATA-----------CCCTGAT------------------------------------TTCC--CATTGAAAATAGGTTCAG----------------------------------------C-GTATAAAA--AGCG--TATTTCAAATAC------------------------AA--------G--AGACTTGTGCTTA-----------GG--------------------CC------------------ATTCACGAATTTGA--------------------------------------------------------------------ATGTTATGATCACGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................TTCATACATACGGACA------------GACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.55	11	0	0	0	0	0	11
................TTATATGTTCTGAAATCGACGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	1	0
................TTATATGTTCTGAAATCGACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TATTTCAAATAC------------------------AA--------G--AGACT...............................................................................................................................................................	20	13	0.08	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TCAAATAC------------------------AA--------G--AGACTTGTGCTT........................................................................................................................................................	23	14	0.07	1	1	0	0	0	0	0
.............................................................................................................................................................ACATACA-------TTTCAACAAAACCATTATA-----------C.................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................................TAC--TTTATGGGGTCTGCCACGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................AATCGACTCAGCTCGTCGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
..............................................................................................................................ATGGGGTCTGCCACGCCTCC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................TTCAACAAAACCATTATA-----------CCCTGA............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................CGACTCAGCTCGTCGCCCTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0

droGri2

TTGAAGTCTTTAT-------------------------------------------------------------------ATATCGAATCGGCTCTTGTTCCTGATCAAGAATATATATAC--TTTATGGGATCAGAGATGCTTCCTTCTGCATGTTATATCCA-------TTTGCACAAAACCATTTAA-----------CTCATTT------------------------------------TTAC----CCATTTTCAGGTCATA----------------------------------------CAAATGCAT-------------------------------------------------TTGCATT--------------C----------------G------------------------------------------------------GCT---------------GAAATTGAAGTTGACCTAATTTCGCATTGTGTGATAATCCTTTGGGA----AGGATTTGATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................CTGATCAAGAATATATATAC--T...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0

droWil2

A----------------------------------------------------------------------------------TCGACTCGGTTGTTGATCCTGATCAAGAATATATATAC--TTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATA-----------CCATTTC------------------------------------ACCC--TATGGGTGTATGGTATAA----------------------------------------AAACAGTG----------CAGAACAAATCACAT---------------------GAATTCGCT----------------CGCTCATACGCATAGTGCGCG-CTG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------AAACGCTT----------------GC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAC---------------GAAGATGAAG---A-C-G------------------AAACGCT...................	26	1	5.00	5	0	3	0	2	0
....................................................................................................................................................................................................................................................................................................................................................T---------------------GAATTCGCT----------------CGCTCATACGCATAG.........................................................................................................................................	25	1	3.00	3	0	3	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAC---------------GAAGATGAAG---A-C-G------------------AAACGCT...................	25	1	2.00	2	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------AA........................	27	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCACAT---------------------GAATTCGCT----------------CGCTCATACGCA............................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCG-CTG----------------------------------------TGACGTAGAC---------------GAAGATGA......................................................	27	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ACAAATCACAT---------------------GAATTCGCT----------------CGCTCA..................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................T---------------------GAATTCGCT----------------CGCTCATACGCATA..........................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................TATGGTATAA----------------------------------------AAACAGTG----------CAGAACAAAT...........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCGCG-CTG----------------------------------------TGACGTAG...............................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................TG----------CAGAACAAATCACAT---------------------GAATTCGCT----------------........................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------AAA.......................	28	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------AA........................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCATACGCATAGTGCGCG-CTG----------------------------------------TGACG..................................................................................	26	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................CACAT---------------------GAATTCGCT----------------CGCTCATACGCA............................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................CAT---------------------GAATTCGCT----------------CGCTCATACGCA............................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................T---------------------GAATTCGCT----------------CGCTCATACGCATAGTG.......................................................................................................................................	27	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................TGGTATAA----------------------------------------AAACAGTG----------CAGAAAT..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCATAGTGCGCG-CTG----------------------------------------TGACGTAGAA---------------..............................................................	25	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------..........................	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAT---------------------GAATTCGCT----------------CGCTCATACGCATAG.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TTCGCT----------------CGCTCATACGCATAGTGCGCG-C.................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------TGACGTAGAC---------------GAAGATGAAG---A-C-G------------------T.........................	26	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------GAAGATGAAG---A-C-G------------------AAACGCTT----------------GC	25	2	0.50	1	0	0	0	1	0
........................................................................................TCGGTTGTTGATCCTGATCAAGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
........................................................................................................................................AGATGCTTCCTTCTGCCTGT...............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
....................................................................................................................TATAC--TTTGTGGGGTCGGAGATGCT............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................TTGTGGGGTCGGAGATGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
...............................................................................................................ATATATATAC--TTTGTGGGGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...........................................................................................................................TTTGTGGGGTCGGAGATGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..............................................................................................GTTGATCCTGATCAAGAATATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
................................................................................................................................GGGGTCGGAGATGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
................................................................................................................TATATATAC--TTTGTGGGGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................CTCGGTTGTTGATCCTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..............................................................................................................................GTGGGGTCGGAGATGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.........................................................................................................TCAAGAATATATATAC--TTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

A----------------------------------------------------------------------------------TTGACTCGGATATTGATGCTGATCAAGAATATATATAC--TTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATATGTATGTAGCACTCAT--------------------------------------------TTTGAGTATCGGGTATAAAAACCTACTATTCAACCCTTTTACACACATTTTGCATGGATTATATGAAC--ATTT-----------------------------------------------------------------------------------------------------------------------------------------T---------------TACAGTCATT---T-T-G------------------CAGTTTTTACA--------------G	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................TGCTGATCAAGAATATATATAC--TT..............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	2.35	47	0	0	0	0	0	0	47	0	0	0
...................................................................................................TGCTGATCAAGAATATATATAC--TTT.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.25	25	0	0	0	0	0	0	25	0	0	0
...........................................................................................................................................................................................................................................................TTGAGTATCGGGTATAAAAACCT.........................................................................................................................................................................................................................................................................	23	6	1.00	6	0	5	1	0	0	0	0	0	0	0
..............................................................................................................................................TTCCTTCTGGACGTTACACA.........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.90	18	0	18	0	0	0	0	0	0	0	0
...............................................................................................................................................TCCTTCTGGACGTTACACAC........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.70	14	0	13	0	0	0	0	1	0	0	0
............................................................................................................................................GATTCCTTCTGGACGTTACACAC........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACACACATCCACTTTTACCAC.........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.50	10	0	8	0	2	0	0	0	0	0	0
.......................................................................................................GATCAAGAATATATATAC--TTTA............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.50	10	0	0	0	0	0	0	0	10	0	0
..................................................................................................ATGCTGATCAAGAATATATATAC--T...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	0	8	0	0
.....................................................................................................................................CGGAAACGATTCCTTCTGGACG................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.35	7	0	0	0	0	0	0	0	0	7	0
..........................................................................................................................................................................................................TCAT--------------------------------------------TTTGAGTATCGGGTATAAAAAC...........................................................................................................................................................................................................................................................................	26	20	0.35	7	0	4	2	0	0	0	0	0	1	0
......................................................................................................................................GGAAACGATTCCTTCTGGAC.................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................TTATGGGGTCGGAAACGATTCC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................TATATAC--TTTATGGGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	5	0	0
.....................................................................................................................................CGGAAACGATTCCTTCTGGACGT...............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	4	0	0
...........................................................................................................................................................................................................CAT--------------------------------------------TTTGAGTATCGGGTATAAA..............................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	4	0	0
...........................................................................................................................................................................................................................................................TTGAGTATCGGGTATAAAAACC..........................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	3	0	0	0	1	0	0	0
..........................................................................................................................................................................................................TCAT--------------------------------------------TTTGAGTATCGGGTATAAAAACC..........................................................................................................................................................................................................................................................................	27	20	0.15	3	0	2	1	0	0	0	0	0	0	0
.................................................................................................................................GGGTCGGAAACGATTCCTTCTGGAC.................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................TGATCAAGAATATATATAC--TT..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................TCGGAAACGATTCCTTCTGGAC.................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	1	0	0	0	2	0	0
.....................................................................................GACTCGGATATTGATGCTGATCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................CGATTCCTTCTGGACGTTACACACA.......................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................ACGATTCCTTCTGGACGTTACACAC........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................GACGTTACACACATCCACTT................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATGGGGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................ATATATATAC--TTTATGGGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATGGGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................T--------------------------------------------TTTGAGTATCGGGTATAAAAACC..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TCAAGAATATATATAC--TTTATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTTGAGTATCGGGTATAAAAACC..........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TCTGGACGTTACACACATCC....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................ATATAC--TTTATGGGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

A----------------------------------------------------------------------------------TCGACTCGGCTATTGATGCTGATCAAGAATATATATAC--TTTATGGGGTCAGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATA-----------CCCCAAT------------------------------------ACTCATTTTGAGTATCGGGAATAA----------------------------------------AAAGAC---T--CCCT------------------------------------------------GTTTTGCTCACT----------------------GGTCATTGGAATTTCGTTAGCAGCATTAATTTC--------------------------------------CATGGTAGC------G-G------------------CAGCGTTAGCA----GAAAGACCAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATTAATTTC--------------------------------------CATGGTAGC------G-G------------------..........................	25	20	0.65	13	0	13	0	0	0	0
.............................................................................................................................................................................................................AAT------------------------------------ACTCATTTTGAGTATCGGGA...................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	1	0	0	0
...............................................................................................................................................................................................................T------------------------------------ACTCATTTTGAGTATCGGGAA..................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CCAAT------------------------------------ACTCATTTTGAGTATCGGGA...................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
....................................................................................CGACTCGGCTATTGATGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATTAATTTC--------------------------------------CATGGTAGC------G-.............................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CT----------------------GGTCATTGGAATTTCGTTAGCA...............................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................T------------------------------------------------GTTTTGCTCACT----------------------GGTCATTGG............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATTAATTTC--------------------------------------CATGGTAGC------G-G------------------C.........................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTTAGCAGCATTAATTTC--------------------------------------CATGG.........................................................	27	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................CTGGACGTTACACACATC.....................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATTAATTTC--------------------------------------CATGGTAGC------...............................................	23	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCACT----------------------GGTCATTGGA...........................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droAna3

TTCACGCCTTCA-----------------------------------TACGGA--------------------CATGACTATATCGACTCTGCTGTTGATGCTGATCAAGAATAT--ATAC--TTTATGGTGTCGGAGATAATTCCTTCTCCTTGTTAAATAAA-------TTCAAACAAATACAAAATA-----------CCCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................GAATAT--ATAC--TTTATGGTGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	3	5	0	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACTCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	4	4	0	0	0	0
...........................................................................................................................TTTATGGTGTCGGAGATAATTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	2	3	0	1	0
........TTCA-----------------------------------TACGGA--------------------CATGACTATATCGACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	3	2	0	0	0	0
................................................................................................................TAT--ATAC--TTTATGGTGTCGGAGATAA.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	2	1	0	0	0	0
TTCACGCCTTCA-----------------------------------TACGGA--------------------CATGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0
................................................................................................................TAT--ATAC--TTTATGGTGTCGGAGATAAT............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0
......................................................................................................................TAC--TTTATGGTGTCGGAGATAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0
................................................................................................................................................................TAAA-------TTCAAACAAATACAAAATA-----------CCCT..............................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
...........................................................................TGACTATATCGACTCTGCTGTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0
..............................................................................CTATATCGACTCTGCTGTTGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0
....................................................................................................GCTGATCAAGAATAT--ATAC--TTTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	1	0	0	0
.TCACGCCTTCA-----------------------------------TACGGA--------------------CATGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.........TCA-----------------------------------TACGGA--------------------CATGACTATATCGACTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	1	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACTCTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..............................................................................CTATATCGACTCTGCTGTTGATGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................TAAA-------TTCAAACAAATACAAAATA-----------CCC...............................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
............................................................................................................................TTATGGTGTCGGAGATAATTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0
......................................................................................................TGATCAAGAATAT--ATAC--TTTATGGT........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...................................................................................TCGACTCTGCTGTTGATGCTGATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...................................................GA--------------------CATGACTATATCGACTCTGCTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
................................................................................................................TAT--ATAC--TTTATGGTGTCGGAGATA..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0
..............................................................................................................AATAT--ATAC--TTTATGGTGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0
............................................................................................................AGAATAT--ATAC--TTTATGGTGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
..........................................................................................................CAAGAATAT--ATAC--TTTATGGTGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.50	3	1	2	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	2	1	0	0	0	0
......................................................................................................................TAC--TTTATGGTGTCGGAGATAAT............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
......................................................................................................................TAC--TTTATGGTGTCGGAGATAATTCC.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................ACGGA--------------------CATGACTATATCGACTCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
TTCACGCCTTCA-----------------------------------TACGGA--------------------CATGACTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................TTATGGTGTCGGAGATAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..CACGCCTTCA-----------------------------------TACGGA--------------------CATGACTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..............................................................................................................AATAT--ATAC--TTTATGGTGTCGGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................TGACTATATCGACTCTGCTGTTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................TTTATGGTGTCGGAGATAATTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........TTCA-----------------------------------TACGGA--------------------CATGACTATATCGACTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................................TCAAGAATAT--ATAC--TTTATGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................ACGGA--------------------CATGACTATATCGACTCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................GA--------------------CATGACTATATCGACTCTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................AAGAATAT--ATAC--TTTATGGTGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................TCAAGAATAT--ATAC--TTTATGGTGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................CATGACTATATCGACTCTGCTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................TAT--ATAC--TTTATGGTGTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........CA-----------------------------------TACGGA--------------------CATGACTATATCGACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................TTCAAACAAATACAAAATA-----------CCCTT.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................TGATCAAGAATAT--ATAC--TTTATGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................TGGTGTCGGAGATAATTCCTTCTCC...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................TGATCAAGAATAT--ATAC--TTTATGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................TAC--TTTATGGTGTCGGAGATAATT...........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.........................................................................CATGACTATATCGACTCTGCTGTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................TCGGAGATAATTCCTTCTCCTTG................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....GCCTTCA-----------------------------------TACGGA--------------------CATGACTATATCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................GAATAT--ATAC--TTTATGGTGTCGGATT................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................TGGTGTCGGAGATAATTCCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
..........................................................................ATGACTATATCGACTCTGCTGTTGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................AATAT--ATAC--TTTATGGTGTCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................TATGGTGTCGGAGATAATTCCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................AAATAAA-------TTCAAACAAATACAAAATA-----------CCC...............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
....................................................A--------------------CATGACTATATCGACTCTGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........A-----------------------------------TACGGA--------------------CATGACTATATCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................GGA--------------------CATGACTATATCGACTCTGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
......................................................................................................TGATCAAGAATAT--ATAC--TTTATGGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0
.........TCA-----------------------------------TACGGA--------------------CATGACTATATCGACTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................TAT--ATAC--TTTATGGTGTCGGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................TAC--TTTATGGTGTCGGAGATAATTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACTCTGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.TCACGCCTTCA-----------------------------------TACGGA--------------------CATGACTATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................T--ATAC--TTTATGGTGTCGGAGATA..............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................TTATGGTGTCGGAGATAAT............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................TCAAGAATAT--ATAC--TTTATGGTGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................AT--ATAC--TTTATGGTGTCGGAGATAATT...........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................ATAC--TTTATGGTGTCGGAGATAATTCC.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................TAAA-------TTCAAACAAATACAAAATA-----------CC................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................TACGGA--------------------CATGACTATATCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................CATGACTATATCGACTCTGCTGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................TTCAAACAAATACAAAATA-----------CCCTTT............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................TATGGTGTCGGAGATAATTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
TTCACGCCTTCA-----------------------------------TACGGA--------------------CATGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................ATCAAGAATAT--ATAC--TTTATGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................ATGGTGTCGGAGATAATTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................ATAC--TTTATGGTGTCGGAGATAATT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................TAATTCCTTCTCCTTGTTAAATAAA-------TT..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTGATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
................................................................................ATATCGACTCTGCTGTTGATGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
...............................................................................TATATCGACTCTGCTGTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0
...............................................................................TATATCGACTCTGCTGTTGATGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
................................................................................ATATCGACTCTGCTGTTGATGCTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
.........................................................................................CTGCTGTTGATGCTGATCAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0
...............................................................................TATATCGACTCTGCTGTTGATGCTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
.................................................................................TATCGACTCTGCTGTTGATGCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
...............................................................................TATATCGACTCTGCTGTTGATGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
..........................................................................................TGCTGTTGATGCTGATCAAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0
..............................................................................................GTTGATGCTGATCAAGAATAT--......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	1

droBip1

CTCTCAG-----------------------ATCCA--CGT----ATATACGGACA------------G---------------ACGACTCTGATGTGGATGCTGTTCATGTATTTATATAC--TTTATGAGGTCGGAGATGATTCCTTCTCTATGTTACATACA-------TTAACACGACTACAATATA-----------CCCTTGT------------------------------------ACTT--AACGAGTAACGGGTATAA----------------------------------------TAAAAC------------------------------------------------AA--------A--GTCG------------------------------------------------------------------------TCGATTCTAGT---------------C------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A----------------------------------------------------------------------------------TCGGCTCGGCTGGTAATGTCAATCAATAATAAACATAC--TTTGTTGGGTCAGAGAAGTCTCCTTCTGCATGTCACATATA-------TTTTCTTGTTACTAAGCTA-----------TCATTTT------------------------------------T----------------------------------------------------------------------------------------------------------------ATAGT-------------------------------------------------------------------------------------------ATAATAA------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTTAT----CCA-----------------------------------CAGGGATT---------------------------------------------CGAGGAC------------------------GACGAGGATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A------------------CTTTGTCGGCG----GCGACAACACC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCAAATCTCTAGCTTT-A------------------------------------------------------GATCTCTAGATCGACTCAACTATTGATCCTGATCCAGGGTATGTATAC--TTTATAGGGTCGGAAAAGCTTCCTTCTAACTGTTGCATACT-------TTTCAACGAATACAATGGA-----------CCCATTT------------------------------------ACTC--GACGAGTAACGGGTATGA----------------------------------------TTACTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A----------------------------------------------------------------------------------TCGACTCGGCTAGTGATCCTGAACAAGAATAT--ATAC--TTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATACAATATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACAGGTATAA----------------------------------------ATACTGCACT--CATT-----------------CTTTACTGTA-----------------------------------------------------CAGG-CTA----------------------------------------TTCTATAGGCCA-------------GAAGAAGATA---G-C-A------------------CAACATTTTCA----GT--------G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TC------TCTAGCTCTTATAGTTTCCGAG-------------------------------------------------------ATCTCAGCTAGTGATCCTGATCACGAATATATATA---TTTATGGTGTCAGAAACGCTTCCTTCTACCTGTTACATACT-------TTCCGACGAATCTAGTGTA-----------CCATTTT------------------------------------ACTC--TACGAGTAACGGGTATAA----------------------------------------ATTTA--------------------------------------------------------CCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A--------------------------------------------------------------------------------TATCGACTCGGCTAGTGACCCTGATAAAGAATATATATTC--TTTATATGGTCGGAAACGCCTCCTTCTAGCTGTTACATACT-------TTTGCACGAATACAATATA-----------CCCTTTT------------------------------------ACTC--TATAAGTAACGGGTATAA----------------------------------------ATAGGGCGATTTC--------------------CTTGACTTTA-----------------------------------------------------G-GGTTAA--------------------------------------TTTTATTTTGAGTGTAGAGCTTCGTTTGAAGTTAGTG---G-T-A------------------CGG----------------GATCTGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A----------------------------------------------------------------------------------TCGACTTCGCTATTGATCCTGATCAAGAATATATATAC--TTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACGGGTATAA----------------------------------------TTATAC------------------------------------------------AA--------A--ATATTTGCTCTTTGTTTGCC-------------------------------------------------------------------------------------------------C-A------------------CAAAATTTGCA---------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTATA---------------GTTCCTGAGATCTCGAAGTTCATAAGCA----------------------------------CAGACAGACAGACTGATCCCGATCAAGAATA----TAC--TTTATATAGTCGAAAACGCTTCCTTCTGCCTGTTACATAAT-------TTTCAACGAATCTAGTTCA-----------CCCTTTT------------------------------------ACAC--TGCGATTAACGGGTATAA----------------------------------------TTAAT-----------------------------------------------------TTGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................TTATATAGTCGAAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................	24	2	5.50	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TTATATAGTCGAAAACGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATA---------------GTTCCTGAGATCTCGAAGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	2.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATA---------------GTTCCTGAGATCTCGAAGTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	1.60	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTATA---------------GTTCCTGAGATCTCGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
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............................................................................................................................................GCTTCCTTCTGCCTGTTAC............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................CTTCTGCCTGTTACATA.........................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATAAT-------TTTCAACGAATCTT..................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AACGCTTCCTTCTGCCTGTTAC............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AACGCTTCCTTCTGCCTGTTACATA.........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CTTCCTTCTGCCTGTTACAT..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATA---------------GTTCCTGAGATCTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AAACGCTTCCTTCTGCCTGTTAC............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AAACGCTTCCTTCTGCCTGTTACA...........................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A----------------------------------------------------------------------------------TTGACTCGGCTATTTATCCTGATCAAGAATATATATAC--TTTATATGGTCGGAAACGCTTCATTCTGCCTGCTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTATA------------------------------------TCTA--TACGAGTAACGGGTATAA----------------------------------------TTATATAAAT--ATCTCT---------------CTTCCTTCTA-----------------------------------------------------A-AG----------------------------------------TTTTTAATTTTGAGCA-------------CAAAAAGTTG---GTA-AATTTCCCATAG--------------TGCA----ATGGAAACACC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................GAATATATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	11.15	223	0	0	0	0	0	0	0	0	0	41	0	0	118	64	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	6.75	135	0	0	0	0	0	0	0	51	0	11	1	0	72	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	3.65	73	0	0	0	0	0	0	7	0	0	2	1	0	63	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	3.50	70	0	0	0	0	0	0	2	0	3	2	0	0	42	21	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	3.15	63	0	0	0	0	0	0	1	6	0	2	0	0	36	18	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	2.20	44	0	0	0	2	0	0	0	4	34	1	1	0	1	1	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	2.00	40	0	0	0	0	0	0	21	0	10	6	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCA-------------CAAAAAGTT.....................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCA-------------CAAAAAGTTG---GTA-.............................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTTGAGCA-------------CAAAAAGTTG---GTA-.............................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TCATTCTGCCTGCTACATACT-------................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---GTA-AATTTCCCATAG--------------TGCA----ATGGA......	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TA------------------------------------TCTA--TACGAGTAACGGGTA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCA-------------CAAAAAGTTG---GTA-AATTTCCCA....................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGCA-------------CAAAAAGTTG---GT...............................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................ACGGGTATAA----------------------------------------TTATATAA...............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.95	19	0	0	0	0	0	0	0	4	9	1	1	0	4	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.95	19	0	0	0	0	0	0	0	2	0	3	3	0	11	0	0	0	0
.............................................................................................................................................................ACATACT-------TTTCAACGAATCTAGTA...............................................................................................................................................................................................................................................................................................................................................................	24	20	0.85	17	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTCAACGAATCTAGTATA-----------CCCTA.............................................................................................................................................................................................................................................................................................................................................	24	8	0.63	5	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	4	0	4	2	1	0	0	0	0	0	0
..................................................................................................................TATATAC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.50	10	0	0	0	0	0	0	6	3	1	0	0	0	0	0	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAACGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.50	10	0	0	0	0	0	0	0	4	6	0	0	0	0	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	6	4	0	0	0
........................................................................................TCGGCTATTTATCCTGATCAAGAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.45	9	0	0	0	0	0	0	0	0	0	3	0	0	6	0	0	0	0
................................................................................................................TATATATAC--TTTATATGGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	4	0	0	0	1	0	2	0	0	0	0
........................................................................................TCGGCTATTTATCCTGATCAAGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.33	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	0	3	2	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTCAACGAATCTAGTATA-----------CCCTAT............................................................................................................................................................................................................................................................................................................................................	25	7	0.29	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	1	1	0	0	0	0	3	0	0	0	0
........................................................................................TCGGCTATTTATCCTGATCAAGAATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.25	5	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0
..................................................................................................................TATATAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
...................................................................................................................................GTCGGAAACGCTTCATTCTG....................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................TCGGCTATTTATCCTGATCAAGAATATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................	29	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAACGCTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATATGGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
..................................................................................................ATCCTGATCAAGAATATATATAC--T...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................T-------TTTCAACGAATCTAGTATA-----------CCCTA.............................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................ATATATAC--TTTATATGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................ATATATAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................C--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................ATACT-------TTTCAACGAATCTAGT................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATATATATAC--TTTATATGGTCGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................TCCTGATCAAGAATATATATAC--TT..............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACGAGTAACGGGTATAA----------------------------------------TT.....................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................TATATATAC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................TATATAC--TTTATATGGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................TATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TA--TACGAGTAACGGG....................................................................................................................................................................................................................................................................................	15	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................TTTATCCTGATCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTCAACGAATCTAGTATA-----------CCCT..............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................AGAATATATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................C--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TATATATAC--TTTATATGGTCGGAAACGCA............................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TAC--TTTATATGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATATGGTCGGAAACGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TATATGGTCGGAAACGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATATGGTCGGAAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................TATATATAC--TTTATATGGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TATAC--TTTATATGGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................TTTCAACGAATCTAGTAT..............................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................AC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................TATATAC--TTTATATGGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................AATATATATAC--TTTATATGGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTTATATGGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................GAATATATATAC--TTTATATGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................ATATAC--TTTATATGGTCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AC--TTTATATGGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACGAGTAACGGGTATA................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACGAGTAACGGGTATAA----------------------------------------TTA....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

A----------------------------------------------------------------------------------TCGACTCAGCTATTGATCCTGAACAAGAATATAAATAC--TTTATATATTCGGAAACGCCTCCTTCTGCCTGTTACATACT-------TTTTAA-GAATCTAGT--A-----------CCCTTTT------------------------------------ACTC--TACGACTAACGGGTATAA----------------------------------------AACTTATA----TACTTT---------------TTTCTTATTA-TTATTATATT------------------------------ATATT------------A-------------------------TATTCTTTATAGGG--TCGATTATAAC---------------G------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

A----------------------------------------------------------------------------------TCGACTCGGTTGTTGATCCTGATCAAGAATATATATAC--TTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATA-----------CCCTTTT------------------------------------ACTC--TACGAGTAACGAGTATGC----------------------------------------GTTGTAATTT--CTCTTT---------------TTTCTTTCTAATTTTTGTTTT-------------------------------------------------------------------------------------------GTTTTTG------------------------------------------------------------------------------A

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTCAAGTTTCTAGCTTTTATAGTTCCTGAGATCGAGCCGTTCA----TACGGACAGACGGACGGACAGACGGACATGACCAGATCGAATCGTCTATTGATCCTGATCAATAATAT--ATAC--TTTATATGGTCGGAAACACTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTACA-----------GCCTTTTACCAAAGACACTAGAATAATTATTCGTTTTGCTTTTACTC--TACGATTGAAGTGTATTA----------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................GGACGGACAGACGGACATGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	1	0
.............................................................CGGACAGACGGACATGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
..............................................................GGACAGACGGACATGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................ACCAAAGACACTAGAATAATT......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0

dvi_13430

scaffold_12970:7334797-7334947 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads