dvi_13363

Name	Class	Family	Strand
T-rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTTTGTTTTCTTAACTTTTACAAATTTCGTTTTATGGTGTATGAAACTTTTTGCTTTCGGTTTTTAGCCACTTTCAAAATTATATGTAATTCTAGAACAACCTAACTTAACATAAAAAATAAATAAAAACAAAACAAAACAGAATAATAAAAGAGAATATAATTAAATGTATTCGATTAATAATGTTCTCCATTCCTTAGGTATTTTTCGATCTAATCAGGGATATTTCATCACGCAAAAAACAACGTCA **************************************************************************************************************************************.................((((((((.(((((.((....)).))))).))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M028 head	SRR060665 9_females_carcasses_total	SRR060667 160_females_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060675 140x9_ovaries_total	SRR1106721 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106729 mixed whole adult body
.............................................................................................................................................................................................................TTTTCGATCTAATCAGGGAT..........................	20	0	1	1.00	1	0	0	0	0	0	0	0	1
..................................................................................................................................................................ATTAAATGTATTCGATTAATAATGTTCTCCATTCCTTAG..................................................	39	0	1	1.00	1	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................ATTTTTCGATCTAATCAGGGAT..........................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................GGTATTTTTCGATCTAATCAGGGA...........................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................TATAATTAAATGTATTCGATTAATAATGTTCTCCATTCCTTAG..................................................	43	0	1	1.00	1	0	0	0	0	0	0	1	0
........................................................................................................................................AAAACAGAATAATAAAAGA................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GTATTTTTCGATCTAATCAGGGAT..........................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
...................................................................................TATGTAATTCTAGAACGGCC....................................................................................................................................................	20	2	1	1.00	1	0	0	0	0	1	0	0	0

TAAAACAAAAGAATTGAAAATGTTTAAAGCAAAATACCACATACTTTGAAAAACGAAAGCCAAAAATCGGTGAAAGTTTTAATATACATTAAGATCTTGTTGGATTGAATTGTATTTTTTATTTATTTTTGTTTTGTTTTGTCTTATTATTTTCTCTTATATTAATTTACATAAGCTAATTATTACAAGAGGTAAGGAATCCATAAAAAGCTAGATTAGTCCCTATAAAGTAGTGCGTTTTTTGTTGCAGT ************************************************.................((((((((.(((((.((....)).))))).))))))))..........**************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR1106722 embryo_10-12h	SRR060674 9x140_ovaries_total	SRR060678 9x140_testes_total	M047 female body	SRR1106729 mixed whole adult body	SRR1106724 embryo_12-14h	SRR1106730 embryo_16-30h	SRR1106725 embryo_14-16h	SRR060684 140x9_0-2h_embryos_total	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106716 embryo_4-6h	SRR1106718 embryo_6-8h	V047 embryo
....................................................................GGTGCAAGTTTTAATA.......................................................................................................................................................................	16	1	12	1.50	18	2	0	0	0	4	3	3	2	0	1	1	1	1	0
............................................................................................GATCTTGTTGCAATGAATTGT..........................................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................ACGAAAGCCAAAAATCGGTGA..................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTGAAAGTTTTAATA.......................................................................................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CTAATCAGTACAAAAGGTAAGG......................................................	22	3	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GATAAGTCCCTATCAAGTG...................	19	3	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................AGCAAAACACCACAGACTA.............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:6866820-6867070 -	dvi_13363	ATTTT---------------------------------GTTTTCT--T------------------------AACTTTTA----------------------CAAATTTCGTTTTATGGTGTAT------------GAAACT-----------TTTTGCTTTCG-----GTTTTTAGCCA---------CTTTCAAAA---T-TATATGTA--A-TTCTAGAACA------ACCT-AACTTAACA------------------TAAAAAAT--AAATA---AAA------------AC-AA---AACAAAACA---G--A---A-------------TAATAAAAGAGAATATAATTAA----ATGT----ATTCGATTAATAA------------------------------------------TGT--TCT--CCA--TT-------------CCTTAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA
droMoj3	scaffold_6473:12329411-12329653 -		ATTCT---------------------------------ACTTTCT--T--------------------------------------------------T----CAATTTGGTTTTATGGTGTAT------------GAAACT-----------TTTTGCTTTCG-----GT-TTTAGACA---------CTT-TCAAA---A-TT-TTGTA--A-TTCTAGAA-----------C-AAATTAACCCCC-------TCCAAA----AAAAA--AAAAAA-AA---GAGTAATCATAAAT-AATGATAGTCAAT-----------------------------------------AATTAACAACATGTTATTAATCGAT----------------GTCACTGT-----------------------GTGC--TC--------TT-------------CTGCAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA
droGri2	scaffold_14853:5677309-5677555 +		ATGTA-----TTTAATTTATTGATA--------------------------------------------------------TTTTTCAAAGATTTCTGG----T----------------GTAT------------GAAACT-----------TTTTGCTTTCG-----GTTTTTAGCCA---------CTT-TCAAA---A-T-TATGTA--A-TTCTAGAACAATCAACAAAA-AACTTAACCCA--------ACAACA------AAA-----TCA------------------ACCAATTAACGCTT---------T------------------------------------------------------CGATTAATTAATCATTCATTATGAGTGT--------------------GTGCTCT--CCT--CTATTGT-------------GTCCAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA
droWil2	scf2_1100000004521:6361018-6361268 +		TATAT---------------------------------ATTTATATAT--ATAC---------------------------------------------------ATTTATGTATAT---GTATCGATATATATATTTATAT-----------TTTCGTTTTTG-----GT-CCAAGTCTTCTCCAGTCCAATATATA---A-TAACTATA--A-TTAAAAAA--------AAAA-AA----------------------------AAAATAAATAAA-------------TAAAAAC-AAAGAAACACAAAA---ATTAAAA---TTA-------------A----------AA----------------AAA-------AAA------T-----------GTTAT------------------GAAA--TTT--G-------------------TTTTAAGTACTTATTGTTTAATTATTATGAATAATTTAAAGGCGCTAGCAACGTGA-AACAACAACAAAA
dp5	XL_group1a:2876673-2876774 +		TTTTT---------------------------------ACTTTA--------------------------------------------------------------------------------------------TGCTTT-----------TCACCACA-----------------AA--------AGTTTCCAAA------------------------ACAG-----AAAC----------------------------CAAAAGAAAACAAAAACAGAA------------AC-------------------------AAAAAAAAAAGAAAAAGTAAAAGTTAATTTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_22:1661643-1661886 -		GTTCA-----CT--------------------------CTGTTCT--T--A------------------GT---------CCTGTATAAAATTTGCTTT----C----------------GTTTTTCTCTATAT--ACATCT-----------TT----TTTTG-----GT-T-TAGCAA--------ACTTTTCAAA---A-TTTCTGTT--TCTTATAGAG--------AAGAAATCGTAACCCC--------AACACA--ACAGCAAC---AACA------GAA---------AC-G----------------AAT-------TGA--------------------------------------------A---------------------------------------TGATATTAATGTATTT--TCT--TTA-TGCATATATTCCTTCGATTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droAna3	scaffold_13248:3995298-3995512 -		GTG-----------------------------------------------------------------------------------TAAAGTAT-----------------------------T------------TGGT-------TTAC--TTCTCACTTTGGTTTGGTTTCTAGAAG---------CTCTTCAAA---A-TTTCTGTA--A-TTTTAGAA--------AACA-AACTTAACCCCAT-CC---ACCACT--ACAAAAA---TAACA-------------------G-GATTAAT-TTT--AAG-C--AAAA---TGA-A-----------G---------------------A-----------------------------------------------CATAAACTA----ATGA--TTT--GTTTCCC-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droBip1	scf7180000394764:7475-7724 +		GTTTG---------------------------------GTTATAA--A------------------------AATAAACA----------------------AAAACCTTAGTTTCTGGTGTAA---AATATT---TGGT-------TTACT-TCTCACCTTTG-----GTTTCTAGAAG---------CTCTTCAAA---A-TTTCTGTA--T-TT-TAGAA--------AACA-AACTTAACCCCA-------CCCACCACTACAAAA--ATAACA------------------AT-TATGCCACATGAT----AATGTAA---CCG-------------A----G-----AA-------------------------CTAA--------------TGGT-----------------------GTGC--TTT--GTATTCC-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAGCGTCA
droKik1	scf7180000302685:56003-56281 -		AATAT---------------------------------ATTTTTT--T-AAAGCATTACCTATGA--CAAAC--------ACTGTTTTTCCTCTTTTTT----T----------------CTAT------------ACGCTTTTGGTCACCTTTTTCTACTTTG-----GT-T-TAGCAA---------TTTTTCCAAAACGTTATTTGTACGT-TTATAGAA--------AAACCAATTTAACCAC--------CCCACA--AAAAAAA--ATATTA------------------ACAAATGAAATTTT-TA---A---AAA---TGA-------------A-----------------------------------------------------------ATCGTTCAATTCGATATTAATAAATCT--CAT--TTA-TTT-------------ATTCAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droFic1	scf7180000453901:868043-868282 +		AATCC---------------------------------GTGTTCT--TTGCTGAATTAGGAAAGTTTAAGAC--------ACTGTTTAAACTTTT---------------------------------------------CT-----------TTTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTTTA--T-CTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAAT---AACA------G------------A-GAACAAATAATAGT---GATTTAA---TA--------------A------------------------------------------------------------------------AGGCTAATAAATGA--TTT--GTA-TTT-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droEle1	scf7180000490996:845338-845558 -		AC------------------------------------------------------------------------------ACTGTGTAAACTTTTCTTT----T----------------CTTT------------TGATCT-----------TTTCTACTTTG-----GTTTCTAGCAA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAACAAATTTAACCCC--------ACACCC--TGAAAAA--ATAACA------------------AC-GAACAAACATTACA---AATATAA---TGA-------------A------------------------------------------------------------------------ATACTAATAAACCA--TTT--G-A-TTT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droRho1	scf7180000776529:94047-94240 +		T----------------------------------------------------------------------------------------------------------------------------------------GATCT-----------TTTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAAAA--------AAAATAATTTAACCCT--------ACCACC--TAAACAA--ATATCA------------------AG-GAACACTT-TTACA---AATATAA---TAT-------------A------------------------------------------------------------------------AAACTAATAAACCAACTTT--G---TTT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droBia1	scf7180000302126:1511154-1511436 +		TTTTTCTGGACTTAATTT---GTTAGTTTTGAAATTTCCTGTTCT--ATGGTGAATGAAGAAAGTTTAAGAC--------ACTGCTTAAACTTTTCCTT----T----------------GT-T------------TGTTC------------TTTCTTCTTTG-----GT-TTTAGAGA---------CTTTTCAAA---A-TTTCTGTA--A-TTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAA--TTAATG------------------AT-GAAAACGTGTA-AT-GAAATACA-AA---A-----------------------------------T--------------------------------------------------GTACTAATAAATCT--CTG--TTA-TAT-------------GTCCAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droTak1	scf7180000415078:241519-241705 -		T---------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--A-TTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAA--TTAATA-------------------C-AATAAAACATTTCA---AATAAAA---TAA-------------A------------------------------------------------------------------------GTACTAATAAATCT--TTC--TTA-TAT-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droEug1	scf7180000408900:153169-153382 +		TTT------------------------------------------------------------------------------------AAACTTTTCGT-------------------------T------------TGATCT-------AC--TTTCTAATTTGGTTT-GTTTTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--C-TTATAGAG--------AAAC-AAATTAACCCC--------ACCACC--TGAAAAAT---AATA------AAA---------AT-GAAT---------AAGAAATA------TAA-A-----------G---------------------T-----------------------------------------------TTTGTACTAATAAAAGA--TTT--TTA-TAT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCACGTAAAAAACAACGTCA
dm3	chrX:3600235-3600467 -		A---------------------------------------------------------------------------------------AAGTTTGCTTTCATTC----------------GTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--C-TTATAGAA--------AAAC-GATTTAACCCCCCCCCCCCACTACC--TGAAATA--ATTATA------AGT---------ATCAATCAAATGCTGCA---A--A---AAAAAAAA-----------C---------------------T-----------------------------------------------GTGATACTAATAAATTG--TTTGTGTA-TGC-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droSim2	x:3318452-3318667 -	dsi_8694	TTT----------------------------------------------------------------------------------TTAAAGTTTGCTTT----C----------------GTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCCC--------ACTACC--TGAAAAATAATTATA------------------AG-GATCAAATGCTGCA---C--A---AAATGA-------------G------------------------------------------------------------------------ATACTAATAAATTC--TTT--GTA-TGC-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droSec2	scaffold_3404:877-1095 +		AA-------------------------------------------------------------------------------CTCTTTAAAGTTTGCTTT----C----------------GTAG------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCTC--------AGTACC--TGAAAAATAATTATA------------------AG-GATCTAATGCTGCA---C--A---AAAAGA-------------G------------------------------------------------------------------------ATACTAATAAATTC--TTT--GTA-TGC-------------GTCTAGATATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droYak3	X:4803836-4804040 +		TTT------------------------------------------------------------------------------------ACACCTTGCTTT----T----------------CTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCCC--------ACTACC--TCAAATA--ATTATG------------------A--GAT---ATACTGCA---C--A---AA------------------------------------------------------------------------------------------ATACTAAAAAAAAAATTTT--GTA-TGT-------------GTCTAGGTGTTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA
droEre2	scaffold_4690:996346-996530 -		T----------------------------------------------------------------------------------------------------------------------------------------------------------TCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTCTAGAA--------AAAC-GATTTAACCCC--------ACTACC--TGAAATA--ATTATA------------------AC-AATCAATTGCAGCA---A--C---AAATAA-------------A------------------------------------------------------------------------TCACTAATAAATTA--TTT--GTA-TAT-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATTTT---------------------------------GTTTTCT--T------------------------AACTTTTA----------------------CAAATTTCGTTTTATGGTGTAT------------GAAACT-----------TTTTGCTTTCG-----GTTTTTAGCCA---------CTTTCAAAA---T-TATATGTA--A-TTCTAGAACA------ACCT-AACTTAACA------------------TAAAAAAT--AAATA---AAA------------AC-AA---AACAAAACA---G--A---A-------------TAATAAAAGAGAATATAATTAA----ATGT----ATTCGATTAATAA------------------------------------------TGT--TCT--CCA--TT-------------CCTTAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGATCTA--ATCAGGGAT......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTAA----ATGT----ATTCGATTAATAA------------------------------------------TGT--TCT--CCA--TT-------------CCTTAG................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCGATCTA--ATCAGGGAT......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTTCGATCTA--ATCAGGGA.......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TATAATTAA----ATGT----ATTCGATTAATAA------------------------------------------TGT--TCT--CCA--TT-------------CCTTAG................................................................	43	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACA---G--A---A-------------TAATAAAAGA...................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTCGATCTA--ATCAGGGAT......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTCT---------------------------------ACTTTCT--T--------------------------------------------------T----CAATTTGGTTTTATGGTGTAT------------GAAACT-----------TTTTGCTTTCG-----GT-TTTAGACA---------CTT-TCAAA---A-TT-TTGTA--A-TTCTAGAA-----------C-AAATTAACCCCC-------TCCAAA----AAAAA--AAAAAA-AA---GAGTAATCATAAAT-AATGATAGTCAAT-----------------------------------------AATTAACAACATGTTATTAATCGAT----------------GTCACTGT-----------------------GTGC--TC--------TT-------------CTGCAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT------------CATCACGCAAAAAACAACGT..	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------CATCACGCAAAAAACAACGTC.	26	1	1.00	1	1	0	0	0	0	0

droGri2

ATGTA-----TTTAATTTATTGATA--------------------------------------------------------TTTTTCAAAGATTTCTGG----T----------------GTAT------------GAAACT-----------TTTTGCTTTCG-----GTTTTTAGCCA---------CTT-TCAAA---A-T-TATGTA--A-TTCTAGAACAATCAACAAAA-AACTTAACCCA--------ACAACA------AAA-----TCA------------------ACCAATTAACGCTT---------T------------------------------------------------------CGATTAATTAATCATTCATTATGAGTGT--------------------GTGCTCT--CCT--CTATTGT-------------GTCCAGGTATTTTTCGATCTA--ATCAGGGATATTT------------CATCACGCAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TATAT---------------------------------ATTTATATAT--ATAC---------------------------------------------------ATTTATGTATAT---GTATCGATATATATATTTATAT-----------TTTCGTTTTTG-----GT-CCAAGTCTTCTCCAGTCCAATATATA---A-TAACTATA--A-TTAAAAAA--------AAAA-AA----------------------------AAAATAAATAAA-------------TAAAAAC-AAAGAAACACAAAA---ATTAAAA---TTA-------------A----------AA----------------AAA-------AAA------T-----------GTTAT------------------GAAA--TTT--G-------------------TTTTAAGTACTTATTGTTTAATTATTATGAATAATTTAAAGGCGCTAGCAACGTGA-AACAACAACAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGGCGCTAGCAACGT................	22	1	7.00	7	0	0	0	7	0
..........................................................................................................................................................................T-CCAAGTCTTCTCCAGTCCAATATATA---A-...................................................................................................................................................................................................................................................................................................................................	28	1	6.00	6	0	6	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGTGA-AACAACA......	27	1	5.00	5	0	3	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGGCGCTAGCAACGT................	21	1	5.00	5	0	0	4	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAATAATTTAAAGGCGCTAGC.....................	26	1	5.00	5	0	0	0	5	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGCGCTAGCAACGT................	19	1	5.00	5	0	0	0	5	0
.........................................................................................................................................TATAT-----------TTTCGTTTTTG-----GT-CCAAGTCT..........................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	3	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAATTTAAAGGCGCTAGCAACG.................	26	1	4.00	4	0	3	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGGCGCTAGCAAC..................	19	1	4.00	4	0	0	0	4	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCCAGTCC................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	3	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACTTATTGTTTAATTATTATGAA.......................................	28	1	4.00	4	0	4	0	0	0
...........................................................................................................................................TAT-----------TTTCGTTTTTG-----GT-CCAAGTCTTC........................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	3	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAATAATTTAAAGGCGCT........................	23	1	3.00	3	0	1	2	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAATAATTTAAAGGCGCTAGCAACG.................	28	1	3.00	3	0	3	0	0	0
............................................................................................................................................AT-----------TTTCGTTTTTG-----GT-CCAA..............................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGTGA-AACA.........	24	1	3.00	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAATAATTTAAAGGC...........................	20	1	3.00	3	2	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAATAATTTAAAGGCGC.........................	22	1	3.00	3	0	1	0	2	0
.........................................................................................................................................................................GT-CCAAGTCTTCTCCAGTCCAAT.............................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0
............................................................................................................................................AT-----------TTTCGTTTTTG-----GT-CCAAGT............................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGGCGCTAGCAACGT................	20	1	3.00	3	0	0	1	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGTGA-AACAACAA.....	28	1	3.00	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAAAGGCGCTAGCAACGTGA-.............	25	1	2.00	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGTGA-AACAAC.......	26	1	2.00	2	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTACTTATTGTTTAATTATTATGAA.......................................	29	1	2.00	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAATTTAAAGGCGCTAGC.....................	23	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................T-CCAAGTCTTCTCCAGTCCAATATATA---.....................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGT............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0
..........................................................................................................................................ATAT-----------TTTCGTTTTTG-----GT-CCAAGTCTT.........................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAACGTGA-AACAACAACA...	21	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAAAGGCGCTAGCAACGTGA-A............	26	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................................GT-CCAAGTCTTCTCCAGTCCA...............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	1	0
................................................................................................................................................................TTTG-----GT-CCAAGTCTTCTCCAGTCC................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0
............................................................................................................................................................CGTTTTTG-----GT-CCAAGTCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AA------T-----------GTTAT------------------GAAA--TTT--G-------------------TTTTAAGTACT...........................................................	27	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCGCTAGCAACGTGA-AACAACA......	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAATAATTTAAAGGCGCTAG......................	23	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................A-------------TAAAAAC-AAAGAAACACAAAA---..................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................A-------------A----------AA----------------AAA-------AAA------T-----------GTTAT------------------GAAA--T..............................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATTGTTTAATTATTATGAA.......................................	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCCAGTCCAA..............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATGAATAATTTAAAGGCGCTAGC.....................	27	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................GTTTTTG-----GT-CCAAGTCTTCTCC.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................TAC---------------------------------------------------ATTTATGTATAT---GTATCGATATATA.........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................T-----------GTTAT------------------GAAA--TTT--G-------------------TTTTAAGTACT...........................................................	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATTATGAATAATTTAAAGGCGC.........................	27	1	1.00	1	0	0	0	1	0
............................................................................................................................................AT-----------TTTCGTTTTTG-----GT-CCAAGTCTTCT.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAATAATTTAAAGGCG..........................	19	1	1.00	1	1	0	0	0	0
.........................................................................................................ATTTATGTATAT---GTATCGATATATA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................TG-----GT-CCAAGTCTTCTCCAGTCCAATATA..........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.....................................................C---------------------------------------------------ATTTATGTATAT---GTATCGATAT............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................ATATTTATAT-----------TTTCGTTTTTG-----GT-C.................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................ATATTTATAT-----------TTTCGTTTTTG-----GT-CCAA..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................AAC-AAAGAAACACAAAA---ATTA..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAAAGGCGCTAGCAACGT................	24	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................TA-------------A----------AA----------------AAA-------AAA------T-----------GTTAT------------------GAAA--TTT--G-------------------TT....................................................................	27	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCC.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................C---------------------------------------------------ATTTATGTATAT---GTATCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................ATATATTTATAT-----------TTTCGTTTTTG-----GT-C.................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTCTTCTCCAG...................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................T-CCAAGTCTTCTCCAGTCCAATATATA---G-...................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAATTTAAAGGCGCTA.......................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTCTTCTCC.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................TAAA-------------TAAAAAC-AAAGAAACACAAAA---AT................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAATTATTATGAATA.....................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGGCGCTAGCAACGTGA-AACA.........	27	1	1.00	1	0	0	0	1	0
..........................................................................................................................................ATAT-----------TTTCGTTTTTG-----GT-CC................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................TG-----GT-CCAAGTCTTCTCCAGTCCAAT.............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------TTTTAAGTACTTATTGTT....................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAATAATTTAAAGGCG..........................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGCGCTAGCAACGTGA-AACAAC.......	27	1	1.00	1	0	0	0	1	0
.............................................................................................................................................T-----------TTTCGTTTTTG-----GT-CCAAGT............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................T-CCAAGTCTTCTCCAGTCCAATATA..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................TTCTCCAGTCCAATATATA---.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...........................................................................................................TTATGTATAT---GTATCGATAT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTACTTATTGTTTAAT................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTAGCAACGTGA-AACAACAACA...	26	1	1.00	1	0	1	0	0	0
......................................................................................................................................ATTTATAT-----------TTTCGTTTTTG-----GT-C.................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTATGAATAATTTAAAGGCGC.........................	26	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATGAATAATTTAAAGGC...........................	22	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................TAAAAAC-AAAGAAACACAAAA---ATTAAAA---T.......................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATGAATAATTTAAAGGCGCT........................	24	1	1.00	1	0	0	1	0	0
......................................................................................................................................ATTTATAT-----------TTTCGTTTTTG-----GT-CCAAG.............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................T-----------TTTCGTTTTTG-----GT-CCAAGTCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................TCGTTTTTG-----GT-CCAAGTCTTCTCCAGTA.................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCTAGCAACGTGA-AACAACAA.....	25	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................TCTTCTCCAGTCCAATATATA---A-TAACT..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTACTTATTGTTTAATTATTA...........................................	26	1	1.00	1	0	1	0	0	0
...........................................................................................................................................TAT-----------TTTCGTTTTTG-----GT-CCAAGTCT..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAAAGGCGCTAGC.....................	18	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TAT------------------GAAA--TTT--G-------------------TTTTAAGTAC............................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAATAATTTAAAGGCGCTAGC.....................	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTCTTCT.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGTGA-AACAA........	25	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAAAGGCGCTAGC.....................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTC...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAATAATTTAAAGGCGCT........................	22	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................GT-CCAAGTCTTCTCCAGT..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTACTTATTGTTTAAT................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGCGCTAGCAACGTGA-AACA.........	25	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGCGCTAGCAACGTGA-AACAACA......	28	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTAATTATTATGAA.......................................	19	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCCAGT..................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAATTTAAAGGCGCTAGCAACGT................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGGCGCTAGCAACGTGA-AAC..........	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................ATATTTATAT-----------TTTCGTTTTTG-----GT-CC................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................T-CCAAGTCTTCTCCAGTCCAATATATA---A-T..................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
............................................................................................................................................AT-----------TTTCGTTTTTG-----GT-CCA...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTATTATGAATAATT..................................	21	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGGCGCTAGCAACGTGA-AA...........	25	1	1.00	1	0	0	1	0	0
............................................................................................................................................AT-----------TTTCGTTTTTG-----GT-CCAAGTCTT.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................CCAAGTCTTCTCCAGTCCAATATA..........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTCTTCTC......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCGCTAGCAACGTGA-AACA.........	23	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................G-----GT-CCAAGTCTTCTCCAGTCCAATA............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAATTTAAAGGCGCTAGC.....................	21	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGCGCTAGCAACGT................	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AA------T-----------GTTAT------------------GAAA--TTT--G-------------------TTTTAA................................................................	22	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCCAGTCCA...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCGCTAGCAACGTGA-AACAACAA.....	27	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................TTTCGTTTTTG-----GT-CCAAGTCT..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................TTG-----GT-CCAAGTCTTCTCCAGTCCAA..............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................TTTTG-----GT-CCAAGTCTTCTCCAGTCCT...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................CTTCTCCAGTCCAATATATA---A-TAACTA.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAATTTAAAGGCGCTAGCAACGT................	27	1	1.00	1	0	0	0	1	0
..................................................................................................................................ATATATTTATAT-----------TTTCGTTTTTG-----GT-CC................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
..........................................................................................................................ATCGATATATATATTTATA.................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0

dp5

TTTTT---------------------------------ACTTTA--------------------------------------------------------------------------------------------TGCTTT-----------TCACCACA-----------------AA--------AGTTTCCAAA------------------------ACAG-----AAAC----------------------------CAAAAGAAAACAAAAACAGAA------------AC-------------------------AAAAAAAAAAGAAAAAGTAAAAGTTAATTTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GTTCA-----CT--------------------------CTGTTCT--T--A------------------GT---------CCTGTATAAAATTTGCTTT----C----------------GTTTTTCTCTATAT--ACATCT-----------TT----TTTTG-----GT-T-TAGCAA--------ACTTTTCAAA---A-TTTCTGTT--TCTTATAGAG--------AAGAAATCGTAACCCC--------AACACA--ACAGCAAC---AACA------GAA---------AC-G----------------AAT-------TGA--------------------------------------------A---------------------------------------TGATATTAATGTATTT--TCT--TTA-TGCATATATTCCTTCGATTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGA.......................................	21	1	5.00	5	5	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAGGGATATTT------------CATCGCGTAAAAAA........	28	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGAT......................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGG........................................	20	1	1.00	1	0	0	1	0	0	0

droAna3

GTG-----------------------------------------------------------------------------------TAAAGTAT-----------------------------T------------TGGT-------TTAC--TTCTCACTTTGGTTTGGTTTCTAGAAG---------CTCTTCAAA---A-TTTCTGTA--A-TTTTAGAA--------AACA-AACTTAACCCCAT-CC---ACCACT--ACAAAAA---TAACA-------------------G-GATTAAT-TTT--AAG-C--AAAA---TGA-A-----------G---------------------A-----------------------------------------------CATAAACTA----ATGA--TTT--GTTTCCC-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATCTA--ATCAGGGAT......................................	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTT------------CATCGCGTAAAAAACAA.....	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGAT......................................	22	1	1.00	1	0	0	1	0	0	0

droBip1

GTTTG---------------------------------GTTATAA--A------------------------AATAAACA----------------------AAAACCTTAGTTTCTGGTGTAA---AATATT---TGGT-------TTACT-TCTCACCTTTG-----GTTTCTAGAAG---------CTCTTCAAA---A-TTTCTGTA--T-TT-TAGAA--------AACA-AACTTAACCCCA-------CCCACCACTACAAAA--ATAACA------------------AT-TATGCCACATGAT----AATGTAA---CCG-------------A----G-----AA-------------------------CTAA--------------TGGT-----------------------GTGC--TTT--GTATTCC-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAGCGTCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATAT---------------------------------ATTTTTT--T-AAAGCATTACCTATGA--CAAAC--------ACTGTTTTTCCTCTTTTTT----T----------------CTAT------------ACGCTTTTGGTCACCTTTTTCTACTTTG-----GT-T-TAGCAA---------TTTTTCCAAAACGTTATTTGTACGT-TTATAGAA--------AAACCAATTTAACCAC--------CCCACA--AAAAAAA--ATATTA------------------ACAAATGAAATTTT-TA---A---AAA---TGA-------------A-----------------------------------------------------------ATCGTTCAATTCGATATTAATAAATCT--CAT--TTA-TTT-------------ATTCAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AATCC---------------------------------GTGTTCT--TTGCTGAATTAGGAAAGTTTAAGAC--------ACTGTTTAAACTTTT---------------------------------------------CT-----------TTTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTTTA--T-CTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAAT---AACA------G------------A-GAACAAATAATAGT---GATTTAA---TA--------------A------------------------------------------------------------------------AGGCTAATAAATGA--TTT--GTA-TTT-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AC------------------------------------------------------------------------------ACTGTGTAAACTTTTCTTT----T----------------CTTT------------TGATCT-----------TTTCTACTTTG-----GTTTCTAGCAA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAACAAATTTAACCCC--------ACACCC--TGAAAAA--ATAACA------------------AC-GAACAAACATTACA---AATATAA---TGA-------------A------------------------------------------------------------------------ATACTAATAAACCA--TTT--G-A-TTT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T----------------------------------------------------------------------------------------------------------------------------------------GATCT-----------TTTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAAAA--------AAAATAATTTAACCCT--------ACCACC--TAAACAA--ATATCA------------------AG-GAACACTT-TTACA---AATATAA---TAT-------------A------------------------------------------------------------------------AAACTAATAAACCAACTTT--G---TTT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTTTCTGGACTTAATTT---GTTAGTTTTGAAATTTCCTGTTCT--ATGGTGAATGAAGAAAGTTTAAGAC--------ACTGCTTAAACTTTTCCTT----T----------------GT-T------------TGTTC------------TTTCTTCTTTG-----GT-TTTAGAGA---------CTTTTCAAA---A-TTTCTGTA--A-TTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAA--TTAATG------------------AT-GAAAACGTGTA-AT-GAAATACA-AA---A-----------------------------------T--------------------------------------------------GTACTAATAAATCT--CTG--TTA-TAT-------------GTCCAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T---------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACTTTG-----GT-TTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--A-TTATAGAA--------AAAC-AATTTAACCCC--------ACCACC--TGAAAAA--TTAATA-------------------C-AATAAAACATTTCA---AATAAAA---TAA-------------A------------------------------------------------------------------------GTACTAATAAATCT--TTC--TTA-TAT-------------GTTTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTT------------------------------------------------------------------------------------AAACTTTTCGT-------------------------T------------TGATCT-------AC--TTTCTAATTTGGTTT-GTTTTTAGCAA---------CTTTTCAAA---A-TTTCTGTA--C-TTATAGAG--------AAAC-AAATTAACCCC--------ACCACC--TGAAAAAT---AATA------AAA---------AT-GAAT---------AAGAAATA------TAA-A-----------G---------------------T-----------------------------------------------TTTGTACTAATAAAAGA--TTT--TTA-TAT-------------ATCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCACGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

A---------------------------------------------------------------------------------------AAGTTTGCTTTCATTC----------------GTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--C-TTATAGAA--------AAAC-GATTTAACCCCCCCCCCCCACTACC--TGAAATA--ATTATA------AGT---------ATCAATCAAATGCTGCA---A--A---AAAAAAAA-----------C---------------------T-----------------------------------------------GTGATACTAATAAATTG--TTTGTGTA-TGC-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................G--TTTGTGTA-TGC-------------GTCTAG................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAGGGATATTT------------CATCGCGT..............	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT------------CATCGCGTAAAAAACAACGTC.	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGATATTT------------C.....................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGAT......................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTG--TTTGTGTA-TGC-------------GTCTAG................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TGC-------------GTCTAGGTATTTTATGATC...................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATCTA--ATCAGGGA.......................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATTTTATGATCTA--ATC............................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATCTA--ATCAGGGATATTT------------C.....................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATTG--TTTGTGTA-TGC-------------GTCTAG................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTG--TTTGTGTA-TGC-------------GTCTAG................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--TTTGTGTA-TGC-------------GTCTAG................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTG--TTTGTGTA-TGC-------------GTCTA.................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTTCTACTTTG-----GT-TATAGCTA---------C................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTA--ATCAGGGATATTT------------CATCGCGTA.............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--TTTGTGTA-TGC-------------GTCTA.................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAATAAATTG--TTTGTGT........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGG........................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------CATCGCGTAAAAAACAACGTCA	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CT-----------TTTCTACTTTG-----GT-TATAGCT...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TTTGTGTA-TGC-------------GTCTAG................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--ATCAGGGATATTT------------CATCGCGTAAAAA.........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGTAAAAAACAACGTC.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATCTA--ATCAGGGAT......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................TTTG-----GT-TATAGCTA---------CTTTTG...........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAGGGATATTT------------CATCGC................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTG--TTTGTGTA-TGC-------------GTCTA.................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGATCTA--ATCAGGGATA.....................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--TTTGTGTA-TGC-------------GTCTAGT...............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTATTTTATGATCTA--ATCAGGGATA.....................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTGCTTTCATTC----------------GTAT------------TGATC.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGATATTT------------CATCGC................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTA--ATCAGGGATATTT------------CATCGCG...............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................ACTTTG-----GT-TATAGCTA---------CTTTT............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CA---A--A---AAAAAAAA-----------C---------------------T-----------------------------------------------GTGC..............................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTT----------------------------------------------------------------------------------TTAAAGTTTGCTTT----C----------------GTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCCC--------ACTACC--TGAAAAATAATTATA------------------AG-GATCAAATGCTGCA---C--A---AAATGA-------------G------------------------------------------------------------------------ATACTAATAAATTC--TTT--GTA-TGC-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTATTTTATGATCTA--ATCAGGGA.......................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTA--ATCAGGGATATTT------------CATCG.................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-.......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GAA--------AAAC-GATTTAACCCC--------ACTACC--TGAAA..................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGATATTT------------CATCGCGTAAAAAACA......	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TA--T-TTATAGAA--------AAAC-GATTTAACCCC--------ACT............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AG-GATCAAATGCTGCA---C--A---AAATGA-------------G------------------------------------------------------------------------A..............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AA-------------------------------------------------------------------------------CTCTTTAAAGTTTGCTTT----C----------------GTAG------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCTC--------AGTACC--TGAAAAATAATTATA------------------AG-GATCTAATGCTGCA---C--A---AAAAGA-------------G------------------------------------------------------------------------ATACTAATAAATTC--TTT--GTA-TGC-------------GTCTAGATATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATAAATTC--TTT--GTA-TGC-------------GTCTAG................................................................	26	6	0.17	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT------------CATCGCGTAAAAAACAACGT..	24	6	0.17	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGAT......................................	22	6	0.17	1	0	0	1	0

droYak3

TTT------------------------------------------------------------------------------------ACACCTTGCTTT----T----------------CTAT------------TGATCT-----------TTTCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTATAGAA--------AAAC-GATTTAACCCC--------ACTACC--TCAAATA--ATTATG------------------A--GAT---ATACTGCA---C--A---AA------------------------------------------------------------------------------------------ATACTAAAAAAAAAATTTT--GTA-TGT-------------GTCTAGGTGTTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGATCTA--ATCAGGGAT......................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAGGGATATTT------------CATCGC................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATCTA--ATCAGGGAT......................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCTA--ATCAGGGATATTT------------CATCGC................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTA--ATCAGGGATATTT------------CATCGC................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T----------------------------------------------------------------------------------------------------------------------------------------------------------TCTACTTTG-----GT-TATAGCTA---------CTTTTCAAA---A-TTTCTGTA--T-TTCTAGAA--------AAAC-GATTTAACCCC--------ACTACC--TGAAATA--ATTATA------------------AC-AATCAATTGCAGCA---A--C---AAATAA-------------A------------------------------------------------------------------------TCACTAATAAATTA--TTT--GTA-TAT-------------GTCTAGGTATTTTATGATCTA--ATCAGGGATATTT------------CATCGCGTAAAAAACAACGTCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGGATATTT------------CATCGC................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGATCTA--ATCAGGGAT......................................	22	1	1.00	1	0	0	0	0	1	0	0

dvi_13363

scaffold_12970:6866870-6867020 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads