ID:

dvi_13360

 Coordinate:

scaffold_12970:6857983-6858133 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.2 -28.7 -28.7

Flybase annnotation

CDS [Dvir\GJ19328-cds]; exon [dvir_GLEANR_4219:6]; intron [Dvir\GJ19328-in]

Repeatable elements

NameClassFamilyStrand
(CGAAT)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACACGCCAGCCCCTGCCAAACCCCCGTCACGACCTTCAGCTTATGCAATAGAAATATTTCGATTCGCATCGCATCGAATCAAATCGAATCGAATCGGATCGGATCGGATCGCATTGATCTTCAGTTGCATTTGCTGCGAATATCTATTCCAAAATGCCTAAATACATTTAACTAAAGCTCTCTCGTTTCCCTCCATTTCAGATGTCAATGAAGCCGTTTGCCTGGCAACCACATCGTCGTCATCATCATCA
**************************************************(((((..(((((((((..(((..((((......))))..)))..)))))))))..(((((.....)))))......((((((..((.((((....)))))))))))).................((((......))))......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 V116
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR1106727
larvae
 M028
head
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
.......................................................................................................................TTCCGATGCATTTGCTGCGAAG.............................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAGCTCTCTCGTTTCCCTCCATTT..................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTTTGCCTGGCAACCACATCGTCGTC.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCTCTCGTTTGCCTCCATTTCAG.................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGCCGTTTGCCTGGCAACCACATCGT.............. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GTCAATGAAGCCGTTTGCCTGG.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCCTGGCAACCACATCGTCGTC.......... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CCATTTCAGATGTCAATGAAGCCGTT................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................CAATGAAGCCGTTTGCCTGGC......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAGATGTCAATGAAGCCGT.................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................CTTCCGATGCATTTGCTGCGA................................................................................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGAAGTTAAGGAAGCCGTT................................. 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATGAAGCCGGTAGCCT............................ 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................GTATTTCGAATCGCATGGC................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................TTCGAATCGCATGGCCTCG............................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TGCCTGGAATACACATCGT.............. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTGCGGTCGGGGACGGTTTGGGGGCAGTGCTGGAAGTCGAATACGTTATCTTTATAAAGCTAAGCGTAGCGTAGCTTAGTTTAGCTTAGCTTAGCCTAGCCTAGCCTAGCGTAACTAGAAGTCAACGTAAACGACGCTTATAGATAAGGTTTTACGGATTTATGTAAATTGATTTCGAGAGAGCAAAGGGAGGTAAAGTCTACAGTTACTTCGGCAAACGGACCGTTGGTGTAGCAGCAGTAGTAGTAGT
**************************************************(((((..(((((((((..(((..((((......))))..)))..)))))))))..(((((.....)))))......((((((..((.((((....)))))))))))).................((((......))))......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060689
160x9_testes_total
 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 V053
head
 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060659
Argentina_testes_total
.............................................................................................................................................................................................GGAGGTAAAGTCTACAGTTAC......................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AGCTTAGCTTAGCCTAGTCTAG.................................................................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GGTTTGGCGGATGTGCTGGAA....................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGGGGTCGGTTTGAGGGCAG............................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTGGAAGTCGAAGAAGTTA.......................................................................................................................................................................................................... 19 2 6 0.50 3 0 0 0 0 0 2 0 0 1 0 0 0 0 0
....................................................................................................CCTCGTCTAGCGTGACTAGAA.................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATAAAGCTAGGCGTAGTGT.................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................AGAGCTGGAAGTCCAATAC.............................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTAGCCTAGCCTAGCCTGG............................................................................................................................................. 19 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........CGGGGTCGGTTTGAGGGCA................................................................................................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCAGTGGTGGAAGTCGTCTAC.............................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............GGTTTGGCGGATGTGCTGGA........................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................AGGGGCAGTGGTGGAAGT..................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........CGGGGACGGTTTGAGGGG................................................................................................................................................................................................................................. 18 2 13 0.15 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
........CGGGGACGGTTTGAGGGGAGG.............................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................AAGCGCAACGTAGCTTAATTT........................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................CTGGAAGTCCAATAC.............................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................ATAGCTTAGCTTAGCCTAG....................................................................................................................................................... 19 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................TTGGGGGCCCTGCTGGAT....................................................................................................................................................................................................................... 18 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TAGCAGCAGTAGTAGTAG. 18 0 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................GGACCATTGGAGTCGCAGC............ 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................GTAGTGGTGGAAGTCGAA................................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................GTTTGGCGGATGTGCTGGA........................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCAAACTGACCGATGGTCTA................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................ATAGAATTCGAGTGAGCAAA............................................................... 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................TAAAGCTAGGCGTAGTGTC................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGTGGGTGTAGCAGCAGT......... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:6857933-6858183 + dvi_13360 ACACGCCAGC----CCCTGCCAAACCCCCGTCACGACCTTCAGCTTATGCAATAG---AA----ATATTTCGATTCGCATCGCATCGAATCAAATCGAATCGAATCGGATCGGATCGGATCGCAT-TGATCTTCAGTTGCATTT-----GCTGCGAATATCTAT-----TCCAAAA---------------------TGCCTAAAT--------------A--CATTT----AACTAAAGCTCTCTCGTTTCCCTCCATTTCAGATGTCAATGAAGCCGTTTGCCTGGCAACCAC----AT-----------------------------------------------------CGTCGTCATCATCATCA
droMoj3 scaffold_6473:12318326-12318632 + TGCAGTTGGTCCGCTGCTGCC---CGTCCCGCTCGACCTTCAGCTTATGCAATAC---AG----ATCGTGCGATTCGCAT-----------GGATCG-ATCGA---------------------T-TGATCTTCAGCTGCAGTTTGTGTATTTGAAATATTTGTTTATATTCTAAACGTCTT------TCAAAAATTTGGCTAAAA---TCTCATTAAATCTCTCTATCCCTCTCT----CTCTCTC-------TCTCTTGCAGATGCCAATGAAGCCGTTTGCCTGGCAACCACCAGCAGCAACACCAATGCCAACGTCAGCACCAACACCACGTCATCAGCATCACCATCATCGTCGTCATCATCATCA
droGri2 scaffold_14853:5686534-5686728 - GGTTTTTTCA----TTCTTTG-----------ATTACCTTCAGCTTATGCAACAACACAAATATGGCGTGTGA------------------AGA-------------------------TCGAATTCGAATTCGAGTTCGAGTTCGA---------------------ATTCAAATCGTTTTATTGAATTA---------ATAAATTGATTTTGTT-----TATGCAT--------------------------TGTTTTGCAGATGTCAATGAAGCTGTCTGCCTGGCAACCAC----AT-----------------------------------------------------CATCGTCTCTATCATCA
droWil2 scf2_1100000004558:684859-684933 + ATCAAATC---------------------------------------------------------------AAATCAAATCGAATCAAATTGAATCGAATCGAATCAAT-----------------------TCAAAAGCAATT-----GTTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCTATTC
dp5 XL_group1e:8611493-8611565 - CTCACGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT----CGCTATCTCTGTCTCTCTTT-T--------------------AGCCGTTTGCCTGGCGGCCGG----CT-----------------------------------------------------CATCAGCATCCGCAACA
droPer2 scaffold_22:1654167-1654243 + CATCTCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TCTCT----CGCTATCTCTGTCTCTTTTTTA--------------------GCCGGTTTGCCTGGCGGCCGG----CT-----------------------------------------------------CATCAGCATCCGCAACA
droAna3 scaffold_13248:3979114-3979133 + CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCCTCCTCCTCCTCA
droBip1 scf7180000395052:9060-9077 - TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTCCTCCTCCTCC
droFic1 scf7180000453910:282914-283036 + ATCTCTCAGC----TTTTATC-----------AAAAGGCCCGGTTAATGTATTGA---AC----ACGAATCGAATCGCATCGAATCGACTTGAATCGACTCGAATCGCCTCGAAACGGATCGAATTCGATTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCACTTG
droEle1 scf7180000489456:23738-23815 + CTAATCTAA-------------------------------------------TCG---AA----TCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAATCGA
droRho1 scf7180000776529:99911-99933 - CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------CGTCCTCCTCCTCATCA
droBia1 scf7180000302126:1516846-1516868 - CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------CATCGTCATCCTCGTCC
droTak1 scf7180000415078:236019-236041 + CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------CATCCTCCTCCTCATCA
droEug1 scf7180000409095:162096-162152 + GACTC-----------------------------------------------------------------------GAATCGAATCGAATCGAATCGAATCGAATCGAATTGAATCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTATTGA
droSim2 x:3312372-3312391 + CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCCTCATCATCCTCA
droSec2 scaffold_4:3103533-3103658 - CAACTGCAAC-------------------------------------TGCAACAG-------------------------CAATTCAATTCGAA---ATTCGATTCCCG-----------------------CCACATGCATTC-----GCT---------------------------------------------------------------------AATCTCG----CGCT--TTCTCTCTCTTTTTCC--------------------AGCAGTTTGTCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCA
droYak3 X:4811722-4811795 - ATACGCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCA----CGCT--TTCTCTCTCTTTTTCC--------------------AGCAGTTTGCCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCA
droEre2 scaffold_4690:989831-989884 + CTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTTCC--------------------AGCAGTTTGCCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACACGCCAGC----CCCTGCCAAACCCCCGTCACGACCTTCAGCTTATGCAATAG---AA----ATATTTCGATTCGCATCGCATCGAATCAAATCGAATCGAATCGGATCGGATCGGATCGCAT-TGATCTTCAGTTGCATTT-----GCTGCGAATATCTAT-----TCCAAAA---------------------TGCCTAAAT--------------A--CATTT----AACTAAAGCTCTCTCGTTTCCCTCCATTTCAGATGTCAATGAAGCCGTTTGCCTGGCAACCAC----AT-----------------------------------------------------CGTCGTCATCATCATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................AAGCTCTCTCGTTTCCCTCCATTT..............................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GTTTGCCTGGCAACCAC----AT-----------------------------------------------------CGTCGTC..........2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AAGCCGTTTGCCTGGCAACCAC----AT-----------------------------------------------------CGT..............2711.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................GTCAATGAAGCCGTTTGCCTGG...................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGCCTGGCAACCAC----AT-----------------------------------------------------CGTCGTC..........2311.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCATTTCAGATGTCAATGAAGCCGTT..........................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAATGAAGCCGTTTGCCTGGC..................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
TGCAGTTGGTCCGCTGCTGCC---CGTCCCGCTCGACCTTCAGCTTATGCAATAC---AG----ATCGTGCGATTCGCAT-----------GGATCG-ATCGA---------------------T-TGATCTTCAGCTGCAGTTTGTGTATTTGAAATATTTGTTTATATTCTAAACGTCTT------TCAAAAATTTGGCTAAAA---TCTCATTAAATCTCTCTATCCCTCTCT----CTCTCTC-------TCTCTTGCAGATGCCAATGAAGCCGTTTGCCTGGCAACCACCAGCAGCAACACCAATGCCAACGTCAGCACCAACACCACGTCATCAGCATCACCATCATCGTCGTCATCATCATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................CGTTTGCCTGGCAACCACC...........................................................................1911.001000010
.................................................................................................................................................................................................................................................................................................................................................ATCAGCATCACCATCATCGTCG............2211.001100000
.....................................................................................................................................................................................................................................................................................CGTTTGCCTGGCAACCACCA..........................................................................2011.001000010
droGri2
GGTTTTTTCA----TTCTTTG-----------ATTACCTTCAGCTTATGCAACAACACAAATATGGCGTGTGA------------------AGA-------------------------TCGAATTCGAATTCGAGTTCGAGTTCGA---------------------ATTCAAATCGTTTTATTGAATTA---------ATAAATTGATTTTGTT-----TATGCAT--------------------------TGTTTTGCAGATGTCAATGAAGCTGTCTGCCTGGCAACCAC----AT-----------------------------------------------------CATCGTCTCTATCATCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................GTGA------------------AGA-------------------------TCGAATTCGAATTCGA............................................................................................................................................................................................................................................2311.00101
................................................................................................................................................................................................................................................................................GAAGCTGTCTGCCTGGCAACC..............................................................................2111.00110
droWil2
ATCAAATC---------------------------------------------------------------AAATCAAATCGAATCAAATTGAATCGAATCGAATCAAT-----------------------TCAAAAGCAATT-----GTTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCTATTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CTCACGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT----CGCTATCTCTGTCTCTCTTT-T--------------------AGCCGTTTGCCTGGCGGCCGG----CT-----------------------------------------------------CATCAGCATCCGCAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................CGGCCGG----CT-----------------------------------------------------CATCAGCATCC......2011.0010100000000
droPer2
CATCTCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TCTCT----CGCTATCTCTGTCTCTTTTTTA--------------------GCCGGTTTGCCTGGCGGCCGG----CT-----------------------------------------------------CATCAGCATCCGCAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCCTCCTCCTCCTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTCCTCCTCCTCCSizeHit CountTotal NormTotal
No Reads
droFic1
ATCTCTCAGC----TTTTATC-----------AAAAGGCCCGGTTAATGTATTGA---AC----ACGAATCGAATCGCATCGAATCGACTTGAATCGACTCGAATCGCCTCGAAACGGATCGAATTCGATTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCACTTGSizeHit CountTotal NormTotal
No Reads
droEle1
CTAATCTAA-------------------------------------------TCG---AA----TCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAATCGASizeHit CountTotal NormTotal
No Reads
droRho1
CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------CGTCCTCCTCCTCATCASizeHit CountTotal NormTotal
No Reads
droBia1
CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------CATCGTCATCCTCGTCCSizeHit CountTotal NormTotal
No Reads
droTak1
CCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------CATCCTCCTCCTCATCASizeHit CountTotal NormTotal
No Reads
droEug1
GACTC-----------------------------------------------------------------------GAATCGAATCGAATCGAATCGAATCGAATCGAATTGAATCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTATTGASizeHit CountTotal NormTotal
No Reads
droSim2
CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCCTCATCATCCTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAACTGCAAC-------------------------------------TGCAACAG-------------------------CAATTCAATTCGAA---ATTCGATTCCCG-----------------------CCACATGCATTC-----GCT---------------------------------------------------------------------AATCTCG----CGCT--TTCTCTCTCTTTTTCC--------------------AGCAGTTTGTCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATACGCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCA----CGCT--TTCTCTCTCTTTTTCC--------------------AGCAGTTTGCCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................CGCT--TTCTCTCTCTTTTTCC--------------------AG...............................................................................................2211.00101000000000
droEre2
CTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTTCC--------------------AGCAGTTTGCCTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................GCAACAAC----AG-----------------------------------------------------CCACACCAGCACCACC.2611.0011000000
............................................................................................................................................................................................................................................................................................CTGGCAACAAC----AG-----------------------------------------------------CCACACCAGCACC....2611.0011000000

Generated: 05/17/2015 at 03:43 AM