ID:

dvi_13332

 Coordinate:

scaffold_12970:6505899-6506049 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.0 -30.9 -30.9

Flybase annnotation

exon [dvir_GLEANR_3656:1]; CDS [Dvir\GJ18836-cds]; intron [Dvir\GJ18836-in]

No Repeatable elements found

Sense Strand Reads

--################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATGACTGGTTTTACCAACGCCGGCTTTGAGAATGATGAGCCCGTCAAGGTGAGTGTTAATACCTGAGTTTAAAAGCTAGGCAATTGGGTATGAAGAAGAATCGGGGCCTTAGGGAGAGCTATAGCTGGGATGAAGGCAAAGCTTAGGCGATAGCAAGTAGTTTGATGCTTTCCTCGGAGACACAAGACACAAATGAGAAAATATTGCGGCCTCCTTTTCTTTTCTCTACAATTTGTAATTCGAAATTAA
**************************************************(((.(((((.(((((((((((((.....)))))..)))))))).............((((((...))).)))....(((((..((((((((((((...((....))....)))))..)))))))))))).)))))....))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M061
embryo
 M028
head
 M047
female body
 V047
embryo
 V116
male body		 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR1106728
larvae
 SRR060657
140_testes_total
 V053
head
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
.........GTTTTACCAACTGCGGCT................................................................................................................................................................................................................................ 18 2 13 8.31 108 86 0 10 0 0 5 0 0 2 1 0 0 0 0 0 0 0 2 0 0 0 1 1 0
........GGTTTTACCAACTGCGGCT................................................................................................................................................................................................................................ 19 2 5 5.40 27 17 0 0 1 1 1 0 0 2 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0
........GGTTTTACCAACTGCGGC................................................................................................................................................................................................................................. 18 2 8 2.00 16 10 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGTTTTACCAACTGCGGCTA............................................................................................................................................................................................................................... 20 3 6 1.17 7 4 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTTTTACCAACTGCGGCTA............................................................................................................................................................................................................................... 19 3 20 1.10 22 9 0 1 1 0 1 2 1 0 1 3 0 0 0 0 0 0 0 1 0 2 0 0 0
........................................................GTTAATACCTGAGTTTAAAAGCTA........................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AATGACTGGTTTTACCAACGCC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CGGCTTTGAGAATGATGAGCC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGCCGGCTTTGAGAATGATGA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGTTTACCAACGCCGGCTT............................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTTGAGAATGATGAGCCCGTC............................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGGAGAATGATGAGCCCGTC............................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTTAATACCTGAGTTTAAAAGCT............................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAAGAAGACGAATCGTGGCCT............................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GGCTTTGAGAATGATGAGCCCGTCAAGC........................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ACCAACGCCGGCTTTGAGAATGATGA................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAGAGACGGAGCCTTAGGGA...................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AAATGACTGATTTTACAAAC....................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.AATGACTGATTTTACAAAC....................................................................................................................................................................................................................................... 19 2 6 0.33 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TTTAACAACGCCAGATTTGAG........................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CAAGGAGTTTGATGCGTT.............................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................ATAACGAGACCGTCAAGGTG...................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGGCCTCCTTTACTTTTCC........................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........GTTTTACCAACTTCGGCT................................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGACTGGTTTGACCATCGCT.................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
AAATGACTGATTTTACAAA........................................................................................................................................................................................................................................ 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................ACAATCGGTGCCCTAGGGA...................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AACTGGGACGAAGGCAAA............................................................................................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..ATGACTGATTTTACAAAC....................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGGGGCCGTAGGGAAACC.................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGTTTTACCAACTGCGGG................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CAAGACACAAAAGAGAAG................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................ATGGATGGTATGAAGGCAA.............................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTACTGACCAAAATGGTTGCGGCCGAAACTCTTACTACTCGGGCAGTTCCACTCACAATTATGGACTCAAATTTTCGATCCGTTAACCCATACTTCTTCTTAGCCCCGGAATCCCTCTCGATATCGACCCTACTTCCGTTTCGAATCCGCTATCGTTCATCAAACTACGAAAGGAGCCTCTGTGTTCTGTGTTTACTCTTTTATAACGCCGGAGGAAAAGAAAAGAGATGTTAAACATTAAGCTTTAATT
**************************************************(((.(((((.(((((((((((((.....)))))..)))))))).............((((((...))).)))....(((((..((((((((((((...((....))....)))))..)))))))))))).)))))....))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060665
9_females_carcasses_total
 SRR1106716
embryo_4-6h
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
...................................................................................................CTTAGTCCCGGAATC......................................................................................................................................... 15 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................ACTTCCGTATCGAATCCTC.................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTATGTGTTTACTCTTTTATT............................................. 21 2 5 0.20 1 0 0 1 0 0 0 0 0
..........AAAAAGGTTGCGCCAGAAACT............................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................ATACCGCAGGAGGAAGAGAA............................ 20 3 14 0.14 2 0 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................AGGAAAAGAAGAGAAATGT................... 19 2 14 0.07 1 0 0 0 0 0 1 0 0
...............................................................................................TCTTCTTGGGCCCGGAAG.......................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.................................................................................................TTCTAAGTCCCGGGATCC........................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:6505849-6506099 - dvi_13332 AAATGACTGGTTTTACCAACGCCGGCTTTGAGAATGATGAGCCCGTCAAGGTGAGTGTTAA----TACCTGAGTTTAAAAGCTAGGCAATTGGGTATGAAGAAGAATCGGGGCCTTAGGGAGAGCTATAGCTGGGATGAAGGCAAAGCTTAGGCGATAGCAAGTAGTTTGATGCTTTCCTCGGAGACACAAGACACAAATGAGAAAATATTGCGGCCTCCTTTTCTTTTCTCTACAATTTGTAATTCGAAATTAA
droMoj3 scaffold_6540:16269464-16269584 - GAGAGCCTTT----GGCAGGG------CAGAGAAAAAAGCGTGAGACAAAGTAAAAAG------------------------------------------------------------------------------------------------------------CGAGACGTGTTTATAAGAACTGTAAAGCTAAAATGGAAACAT----------------TTAAGATAGACAAATTGTCGATTAAAATTAA
droGri2 scaffold_14853:5984850-5984909 + AAATGACTGGTTTTACTAACGGCGGCTTTGAGAACGATGAGCCCGTCAAGGTGAGTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:4639384-4639445 - AAATGACTGGTTTTACCAACGCCGGCTTCGAAAACGATGAGCCAGTTAAGGTAAGTTGTTA----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group3b:244744-244802 - AGATGACTGGTTTTACCAACGGCGGATTCGAGAACGATGAGCCCGTCAAGGTGAGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_56:271072-271130 - AGATGACTGGTTTTACCAACGGCGGATTCGAGAACGATGAGCCCGTCAAGGTGAGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13334:600484-600542 - CGATGACTGGCTTCACCAACGCTGGTTTTGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396431:957301-957359 + CGATGACTGGCTTCACCAACGCTGGTTTTGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301542:126794-126852 - AGATGACTGGTTTCACGAACGCCGGTTTCGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454077:1356374-1356443 - AGATGACTGGTTTCACGAACGCCGGCTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTCCGTAGTACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490546:608773-608831 - AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779614:68575-68633 - AGATGACTGGTTTCACCAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:1406633-1406691 - AGATGACTGGTTTCACGAACGCCGGCTTCGAGAACGACGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415568:167331-167403 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTT-------TTGGGTCTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409065:130437-130495 - AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:16822726-16822791 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTGTA----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:15923059-15923121 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTG----TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:656762-656827 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTA----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:15433378-15433436 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:7177677-7177735 + AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAATGACTGGTTTTACCAACGCCGGCTTTGAGAATGATGAGCCCGTCAAGGTGAGTGTTAA----TACCTGAGTTTAAAAGCTAGGCAATTGGGTATGAAGAAGAATCGGGGCCTTAGGGAGAGCTATAGCTGGGATGAAGGCAAAGCTTAGGCGATAGCAAGTAGTTTGATGCTTTCCTCGGAGACACAAGACACAAATGAGAAAATATTGCGGCCTCCTTTTCTTTTCTCTACAATTTGTAATTCGAAATTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................GTTAA----TACCTGAGTTTAAAAGCTA...........................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.AATGACTGGTTTTACCAACGCC........................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................CGGCTTTGAGAATGATGAGCC....................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
...................CGCCGGCTTTGAGAATGATGA.......................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.........................CTTTGAGAATGATGAGCCCGTC................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
........................................................GTTAA----TACCTGAGTTTAAAAGCT............................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.......................GGCTTTGAGAATGATGAGCCCGTCAAGC............................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..............ACCAACGCCGGCTTTGAGAATGATGA.......................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
GAGAGCCTTT----GGCAGGG------CAGAGAAAAAAGCGTGAGACAAAGTAAAAAG------------------------------------------------------------------------------------------------------------CGAGACGTGTTTATAAGAACTGTAAAGCTAAAATGGAAACAT----------------TTAAGATAGACAAATTGTCGATTAAAATTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAATGACTGGTTTTACTAACGGCGGCTTTGAGAACGATGAGCCCGTCAAGGTGAGTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................GGCGGCTTTGAGAACGATGAGCCC...................................................................................................................................................................................................................2411.00110
.............................GAGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2311.00101
..............................AGAACGATGAGCCCGTCAAGCCA..........................................................................................................................................................................................................2320.50101
droWil2
AAATGACTGGTTTTACCAACGCCGGCTTCGAAAACGATGAGCCAGTTAAGGTAAGTTGTTA----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................GGCTTCGAAAACGATGAGC.....................................................................................................................................................................................................................1913.00300030
............TTACCAACGCCGGCTTCGAAAAC............................................................................................................................................................................................................................2312.00220000
........GGTTTTACCAACGCCGGCTT...................................................................................................................................................................................................................................2012.00211000
................CAACGCCGGCTTCGAAAACGATGAG......................................................................................................................................................................................................................2511.00100010
.................AACGCCGGCTTCGAAAACGATGAGCC....................................................................................................................................................................................................................2611.00100010
................CAACGCCGGCTTCGAAAACGATGAGCCA...................................................................................................................................................................................................................2811.00100010
............................CGAAAACGATGAGCCAGTT................................................................................................................................................................................................................1911.00100010
.............................GAAAACGATGAGCCAGTTAA..............................................................................................................................................................................................................2011.00100010
..........................TTCGAAAACGATGAGCCAGTTAAGCC...........................................................................................................................................................................................................2611.00100100
...........................TCGAAAACGATGAGCCAGTTAAG.............................................................................................................................................................................................................2311.00100001
.............TACCAACGCCGGCTTCGA................................................................................................................................................................................................................................1811.00100010
.................AACGCCGGCTTCGAAAAC............................................................................................................................................................................................................................1811.00100010
................................AACGATGAGCCAGTTAAGC............................................................................................................................................................................................................1911.00100010
..........................TTCGAAAACGATGAGCCA...................................................................................................................................................................................................................1811.00100010
dp5
AGATGACTGGTTTTACCAACGGCGGATTCGAGAACGATGAGCCCGTCAAGGTGAGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................GATTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2014.0040310000000
.......................GGATTCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2413.0030300000000
........................GATTCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2312.0020200000000
.........GTTTTACCAACGGCGGATTCG.................................................................................................................................................................................................................................2112.0020200000000
...............................GAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2012.0020100100000
............TTACCAACGGCGGATTCGA................................................................................................................................................................................................................................1912.0020200000000
................CAACGGCGGATTCGAGAACGATG........................................................................................................................................................................................................................2311.0010000100000
.........GTTTTACCAACGGCGGATT...................................................................................................................................................................................................................................1911.0010100000000
............................CGAGAACGATGAGCCCGTC................................................................................................................................................................................................................1911.0010100000000
........GGTTTTACCAACGGCGGATTCGA................................................................................................................................................................................................................................2311.0010100000000
...........TTTACCAACGGCGGATTCGAGAAC............................................................................................................................................................................................................................2411.0010100000000
............TTACCAACGGCGGATTCGAGAAC............................................................................................................................................................................................................................2311.0010100000000
............TTACCAACGGCGGATTCGAGAACG...........................................................................................................................................................................................................................2411.0010100000000
................................AACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2011.0010100000000
...........................TCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1911.0010100000000
.................AACGGCGGATTCGAGAACGATG........................................................................................................................................................................................................................2211.0010100000000
........GGTTTTACCAACGGCGGATT...................................................................................................................................................................................................................................2011.0010100000000
.....................GCGGATTCGAGAACGATG........................................................................................................................................................................................................................1811.0010100000000
............................CGAGAACGATGAGCCCGTCA...............................................................................................................................................................................................................2011.0010000100000
................CAACGGCGGATTCGAGAACGATGAGCC....................................................................................................................................................................................................................2711.0010100000000
....GACTGGTTTTACCAACGGC........................................................................................................................................................................................................................................1911.0010100000000
................CAACGGCGGATTCGAGAACG...........................................................................................................................................................................................................................2011.0010100000000
....GACTGGTTTTACCAACGGCGGATT...................................................................................................................................................................................................................................2411.0010100000000
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.0010100000000
droPer2
AGATGACTGGTTTTACCAACGGCGGATTCGAGAACGATGAGCCCGTCAAGGTGAGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CGAGAACGATGAGCCCGT.................................................................................................................................................................................................................18158.00585800000
............................CGAGAACGATGAGCCCGTC................................................................................................................................................................................................................19133.00333210000
............................CGAGAACGATGAGCCCGTCA...............................................................................................................................................................................................................20110.00101000000
............TTACCAACGGCGGATTCGA................................................................................................................................................................................................................................1918.008701000
.........................ATTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1916.006600000
..........................TTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1815.005500000
............TTACCAACGGCGGATTCGAGAAC............................................................................................................................................................................................................................2314.004400000
..........................TTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2014.004310000
............TTACCAACGGCGGATTCGAGAACGATGA.......................................................................................................................................................................................................................2813.003300000
.....................GCGGATTCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2613.003300000
.......................GGATTCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2413.003300000
...........................TCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2013.003300000
.........................ATTCGAGAACGATGAGCC....................................................................................................................................................................................................................1813.003300000
............................CGAGAACGATGAGCCCGG.................................................................................................................................................................................................................1813.003300000
..........................TTCGAGAACGATGAGCCCGTC................................................................................................................................................................................................................2113.003300000
.........................ATTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2112.002200000
...........................TCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1912.002200000
...........TTTACCAACGGCGGATTCGAGAAC............................................................................................................................................................................................................................2412.002200000
.............................GAGAACGATGAGCCCGTC................................................................................................................................................................................................................1812.002200000
.............TACCAACGGCGGATTCGAGAACGAT.........................................................................................................................................................................................................................2511.001100000
................CAACGGCGGATTCGAGAACGATGA.......................................................................................................................................................................................................................2411.001100000
............TTACCAACGGCGGATTCGAGAACGATGG.......................................................................................................................................................................................................................2811.001100000
......................CGGATTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2411.001100000
..........................TTCGAGAACGATGAGCCCGC.................................................................................................................................................................................................................2011.001100000
...........TTTACCAACGGCGGATTCGAGAACG...........................................................................................................................................................................................................................2511.001001000
.............TACCAACGGCGGATTCGA................................................................................................................................................................................................................................1811.001100000
...........TTTACCAACGGCGGATTC..................................................................................................................................................................................................................................1811.001100000
........................GATTCGAGAACGATGAGCCCGC.................................................................................................................................................................................................................2211.001100000
.................AACGGCGGATTCGAGAAC............................................................................................................................................................................................................................1811.001001000
..............ACCAACGGCGGATTCGAGAAC............................................................................................................................................................................................................................2111.001100000
............TTACCAACGGCGGATTCGAGAACGATG........................................................................................................................................................................................................................2711.001100000
............TTACCAACGGCGGATTCGAGA..............................................................................................................................................................................................................................2111.001100000
........................GATTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2011.001100000
............................CGAGAACGATGAGCCCGTCAAG.............................................................................................................................................................................................................2211.001100000
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.001010000
............................CGAGAACGATGAGCCCGC.................................................................................................................................................................................................................1811.001100000
............................CGAGAACGATGAGCCCAC.................................................................................................................................................................................................................1860.171100000
droAna3
CGATGACTGGCTTCACCAACGCTGGTTTTGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................AAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2012.002010010
.......................GGTTTTGAAAACGATGAGCCC...................................................................................................................................................................................................................2112.002020000
..........................TTTGAAAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2612.002011000
........................GTTTTGAAAACGATGAGCCCGTCAA..............................................................................................................................................................................................................2512.002000020
..........................TTTGAAAACGATGAGCCC...................................................................................................................................................................................................................1812.002020000
...........................TTGAAAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2511.001010000
.............CACCAACGCTGGTTTTGAAAAC............................................................................................................................................................................................................................2211.001010000
.........................TTTTGAAAACGATGAGCCC...................................................................................................................................................................................................................1911.001010000
................CAACGCTGGTTTTGAAAACGATGAGCCC...................................................................................................................................................................................................................2811.001010000
........................GTTTTGAAAACGATGAGCCC...................................................................................................................................................................................................................2011.001010000
...................................GATGAGCCCGTCAAGGTGAGT.......................................................................................................................................................................................................2111.001001000
................................AACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2011.001010000
...............................AAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.001010000
.........................TTTTGAAAACGATGAGCCCGC.................................................................................................................................................................................................................2111.001010000
..........................TTTGAAAACGATGAGCCCGTC................................................................................................................................................................................................................2111.001010000
..........................TTTGAAAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2511.001000010
......CTGGCTTCACCAACGCTGGT.....................................................................................................................................................................................................................................2011.001010000
......CTGGCTTCACCAACGCTGGTT....................................................................................................................................................................................................................................2111.001010000
...TGACTGGCTTCACCAACGCTGGT.....................................................................................................................................................................................................................................2311.001010000
..ATGACTGGCTTCACCAACGCTGG......................................................................................................................................................................................................................................2311.001100000
..........................TTTGAAAACGATGAGCCCGC.................................................................................................................................................................................................................2011.001010000
.............CACCAACGCTGGTTTTGAAAACGA..........................................................................................................................................................................................................................2411.001100000
.................AACGCTGGTTTTGAAAACGATGAGCCC...................................................................................................................................................................................................................2711.001010000
................CAACGCTGGTTTTGAAAACGATGAGC.....................................................................................................................................................................................................................2611.001100000
...........TTCACCAACGCTGGTTTTGAAAAC............................................................................................................................................................................................................................2411.001010000
droBip1
CGATGACTGGCTTCACCAACGCTGGTTTTGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGATGACTGGTTTCACGAACGCCGGTTTCGAAAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGATGACTGGTTTCACGAACGCCGGCTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTCCGTAGTACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGATGACTGGTTTCACCAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGATGACTGGTTTCACGAACGCCGGCTTCGAGAACGACGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTT-------TTGGGTCTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTGTA----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................GAACGATGAGCCCGTCAA..............................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTTCGAGAACGATGAGCC....................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCACGAACGCCGGTTTCGAGAACG...........................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACTGGTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAACGATGAGCCCGTCAAGCCA..........................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTCGAGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TTCACGAACGCCGGTTTCGAGAACGATG........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGAGCCCGTCAAGGTGAGTGT.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGAGAACGATGAGCCCGTCAA..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGAACGATGAGCCCGTCAA..............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......CTGGTTTCACGAACGCCGGT.....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CGAACGCCGGTTTCGAGAACGATGAGC.....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................TTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCGGTTTCGAGAACGATGAGCC....................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................ACGCCGGTTTCGAGAACGATG........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGTTTCACGAACGCCGGTTTCGAGA..............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GAGAACGATGAGCCCGTC................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............CGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............CACGAACGCCGGTTTCGAGAACGATGA.......................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTTTCACGAACGCCGGTTTCGAGA..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGTTTCACGAACGCCGGTTTC..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GAGAACGATGAGCCCGTCAAG.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGTTTCACGAACGCCGGTTTCG.................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................ACGCCGGTTTCGAGAACGATGA.......................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....GACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACGATGAGCCCGTCAAGCCA..........................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...TGACTGGTTTCACGAGAT..........................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTG----TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........GGTTTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2716.00605100000000000000
............................CGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1816.00605100000000000000
..........................TTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2014.00404000000000000000
..........................TTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1813.00302100000000000000
.GATGACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................2213.00303000000000000000
.......................GGTTTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2312.00201100000000000000
.........................TTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1912.00200200000000000000
........................GTTTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2212.00201100000000000000
............TCACGAACGCCGGTTTCGAGA..............................................................................................................................................................................................................................2112.00200200000000000000
...........................TCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1912.00202000000000000000
AGATGACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................2311.00100100000000000000
.GATGACTGGTTTCACGAAC...........................................................................................................................................................................................................................................1911.00101000000000000000
...................CGCCGGTTTCGAGAACGATGAGCC....................................................................................................................................................................................................................2411.00101000000000000000
...........................TCGAGAACGATGAGCCCGG.................................................................................................................................................................................................................1911.00101000000000000000
...........TTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2411.00101000000000000000
........GGTTTCACGAACGCCGGTTTC..................................................................................................................................................................................................................................2111.00100010000000000000
......................CGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2211.00101000000000000000
.............................GAGAACGATGAGCCCGTCA...............................................................................................................................................................................................................1911.00101000000000000000
........GGTTTCACGAACGCCGGTTT...................................................................................................................................................................................................................................2011.00100010000000000000
.........GTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2211.00100100000000000000
....................GCCGGTTTCGAGAACGATGAGCC....................................................................................................................................................................................................................2311.00100100000000000000
.......................GGTTTCGAGAACGATGAGCCCGG.................................................................................................................................................................................................................2311.00101000000000000000
..ATGACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................2111.00101000000000000000
........GGTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2311.00101000000000000000
........GGTTTCACGAACGCCGGTTTCGAG...............................................................................................................................................................................................................................2411.00101000000000000000
..........................TTCGAGAACGATGAGCCCGTCAA..............................................................................................................................................................................................................2311.00101000000000000000
...........................TCGAGAACGATGAGCCCGTCAA..............................................................................................................................................................................................................2211.00100100000000000000
.........GTTTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2611.00101000000000000000
........................GTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2011.00101000000000000000
....................GCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2411.00101000000000000000
............................CGAGAACGATGAGCCCGG.................................................................................................................................................................................................................1820.50101000000000000000
droSec2
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTTTA----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................ACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................1914.0040040
.............................GAGAACGATGAGCCCGTC................................................................................................................................................................................................................1813.0030030
.GATGACTGGTTTCACGAACGCCGG......................................................................................................................................................................................................................................2412.0020020
................................AACGATGAGCCCGTCAAGC............................................................................................................................................................................................................1912.0020020
...................CGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2512.0020020
................GAACGCCGGTTTCGAGAA.............................................................................................................................................................................................................................1812.0020020
.............CACGAACGCCGGTTTCGAG...............................................................................................................................................................................................................................1911.0010010
...................CGCCGGTTTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2711.0010010
................GAACGCCGGTTTCGAGAACG...........................................................................................................................................................................................................................2011.0010010
............................CGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1811.0010010
....................GCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2411.0010010
.........................TTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1911.0010010
....GACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................1911.0010010
...TGACTGGTTTCACGAACGCCGG......................................................................................................................................................................................................................................2211.0010010
...............................GAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2011.0010010
.............................GAGAACGATGAGCCCGTCA...............................................................................................................................................................................................................1911.0010010
...........TTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2411.0010010
....GACTGGTTTCACGAACGC.........................................................................................................................................................................................................................................1811.0010010
............................CGAGAACGATGAGCCCGTCAAGGTGA.........................................................................................................................................................................................................2611.0010010
.........GTTTCACGAACGCCGGTTTCGAGAA.............................................................................................................................................................................................................................2511.0010010
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.0010010
..........TTTCACGAACGCCGGTTT...................................................................................................................................................................................................................................1811.0011000
.......................GGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2111.0010010
............................CGAGAACGATGAGCCCGTC................................................................................................................................................................................................................1911.0010010
.............CACGAACGCCGGTTTCGAGAA.............................................................................................................................................................................................................................2111.0010010
.GATGACTGGTTTCACGAACGCC........................................................................................................................................................................................................................................2211.0010010
.GATGACTGGTTTCACGAACGC.........................................................................................................................................................................................................................................2111.0010010
.........GTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2211.0010010
..........TTTCACGAACGCCGGTTTCGAGAA.............................................................................................................................................................................................................................2411.0010010
................................AACGATGAGCCCGTCAAGCCA..........................................................................................................................................................................................................2120.5010010
droYak3
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2113.00301200000000
..................ACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2612.00200200000000
.................AACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2712.00200200000000
............................CGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1811.00100100000000
..................ACGCCGGTTTCGAGAACGA..........................................................................................................................................................................................................................1911.00100000010000
....................GCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2411.00100100000000
...........................TCGAGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2511.00100100000000
..................................CGATGAGCCCGTCAAGGTGAGT.......................................................................................................................................................................................................2211.00100000010000
.........GTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2211.00100100000000
..........................TTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1811.00100100000000
..............................AGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2211.00100100000000
................................AACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2011.00100000010000
........GGTTTCACGAACGCCGGTTTCGA................................................................................................................................................................................................................................2311.00101000000000
........................GTTTCGAGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2811.00100100000000
........GGTTTCACGAACGCCGGTTTCGAG...............................................................................................................................................................................................................................2411.00100000010000
...................CGCCGGTTTCGAGAACGATG........................................................................................................................................................................................................................2011.00100000010000
..................ACGCCGGTTTCGAGAACGATGAGCCCGC.................................................................................................................................................................................................................2811.00100100000000
........GGTTTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2711.00100100000000
.............................GAGAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2311.00100000100000
........................GTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2011.00100100000000
................GAACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2811.00100100000000
...................CGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2511.00100100000000
............................CGAGAACGATGAGCCCGTCAAGC............................................................................................................................................................................................................2311.00100000010000
.................................ACGATGAGCCCGTCAAGGTGAGT.......................................................................................................................................................................................................2311.00100000010000
.........................TTTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2111.00100000010000
droEre2
AGATGACTGGTTTCACGAACGCCGGTTTCGAGAACGATGAGCCCGTCAAGGTGAGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................CGAGAACGATGAGCCCGT.................................................................................................................................................................................................................1812.0020001010
........GGTTTCACGAACGCCGGTTTCGAGAAC............................................................................................................................................................................................................................2711.0010100000
.......................GGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2111.0010100000
....GACTGGTTTCACGAACGCCGG......................................................................................................................................................................................................................................2111.0010000100
...................CGCCGGTTTCGAGAACGATGA.......................................................................................................................................................................................................................2111.0010001000
..................ACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2611.0010100000
...............................GAACGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................2111.0010000010
.........GTTTCACGAACGCCGGTTTCGAGAA.............................................................................................................................................................................................................................2511.0010100000
........................GTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2011.0010100000
.................AACGCCGGTTTCGAGAACGATGAGCCC...................................................................................................................................................................................................................2711.0010100000
..........................TTCGAGAACGATGAGCCC...................................................................................................................................................................................................................1811.0010100000
....................GCCGGTTTCGAGAACGATGAGCCCGT.................................................................................................................................................................................................................2611.0010100000
..................................CGATGAGCCCGTCAAGCC...........................................................................................................................................................................................................1850.2010100000

Generated: 05/16/2015 at 11:51 PM