ID:

dvi_13319

 Coordinate:

scaffold_12970:6661839-6661989 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.0 -4.0 -4.0

Flybase annnotation

exon [dvir_GLEANR_3652:8]; CDS [Dvir\GJ18832-cds]; intron [Dvir\GJ18832-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAAATATGATTCACACTTAAGACGTTCAATAGTGGAAATTGATGAATAACAAAACCTCTTCGTACACAATTTTCTCTTAGCAATAAACATTTTTATATTTACATTTACATTACGATTTAAAATGGATTTTATGAATAACATACTCCCCTCTATCTCCTTCTCACCCTCTCCCTCTGTCTCTCTCTTTCTCATTTGTACAGTCGCACCAGAAATTCTTTGAGCTGCTGATGAAAACCCAAATGTTCATTAG
**************************************************............(((((................(((((....)))))...........................(((...((((.....)))).)))...............................................)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060654
160x9_ovaries_total
................................................................................................................................................................................................................TGAAATTCTTTGAGCTGCTGATGA................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................GATAAGTCGCACCAGAAATTCTT................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTCTTTGAGCTGCTGATGAAAACCC............. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................ACATTACGATTTAAAATGGAT........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTGCTGATGAAAACCCAAATGTTC..... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AATGCTTTGATCTGCTGATGTA.................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGATCTGCTGTTGAAAA................ 19 2 8 0.25 2 0 0 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TTTGATCTGCTGTTGAAAAA............... 20 3 20 0.15 3 0 0 3 0 0 0 0 0 0
......................................................................................................................................................................................CTCTTTCTGAATTGTACGGT................................................. 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTTGATCTGCTGTTGAAA................. 18 2 20 0.10 2 0 0 0 0 0 0 2 0 0
.......TGATACACGCTTAAGACCT................................................................................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................TTCTCTGAGCTGCTGATGATG................. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACTTTATACTAAGTGTGAATTCTGCAAGTTATCACCTTTAACTACTTATTGTTTTGGAGAAGCATGTGTTAAAAGAGAATCGTTATTTGTAAAAATATAAATGTAAATGTAATGCTAAATTTTACCTAAAATACTTATTGTATGAGGGGAGATAGAGGAAGAGTGGGAGAGGGAGACAGAGAGAGAAAGAGTAAACATGTCAGCGTGGTCTTTAAGAAACTCGACGACTACTTTTGGGTTTACAAGTAATC
**************************************************............(((((................(((((....)))))...........................(((...((((.....)))).)))...............................................)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060679
140x9_testes_total
.........................................CTACTTATTGTTGTGCAGAA.............................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGCAGTCTTTAAGAAACTCCA........................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0
.................................................................GTGATAAAAGAGAATACTTATT.................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................TTGAAGAAGCATGGGGTAAAA................................................................................................................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................GAGACAGAGGGAGCAAGAGTA.......................................................... 21 2 5 0.20 1 0 0 0 0 1 0 0 0
.........................................CTACTTATTGTTGTGCAG................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................GAGGAAGAATGGGAAACGGAG............................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0
..........................................................................................AAAAATATAAATGGCAATGT............................................................................................................................................. 20 2 9 0.11 1 0 0 0 0 0 0 1 0
...........................................................................................................TGTAATGCTAAATTTGGCA............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:6661789-6662039 - dvi_13319 TGAAA--TATGATT-C----------------------------------ACA---------------------------------CTTA---------------------------AGACGTT---CA---------------ATAGT----------G---G----------------------------------------------------------------------------------------------------AAATTGATGAATA--------ACAAAACC-------TCT------------------------------------------T--------------------------------------------CGTAC------ACAATT-------------------------------------TT----------CTCTTAGCAATAAACATTTTTATATTTACATTTACATTACGATTTAAAATGGATTTT---------------------------------------------------AT-------GAATAACATAC----------------------------T--------------------------------------------------CCCCTCTATCTCCTTCTCA----------CCCTC----TCCCTCTGTC----TCTCTC----------------TTTCTCATTTG------TAC----AGTCGCACCAGAAATTCTTTGAGCTGCTGATGAAAACCCAAATGTTC-ATTAG
droMoj3 scaffold_6540:22720826-22721026 - TGAGG--TGCCACA-C----------------------------------AAA---------------------------------A------------------------------TAAAGC--------------------TGCAATAAAAAAT-----------------------------------------------TGCA-----------------------------------------------------------------AAAAA--------ATAAAATTATATATA----------TTTAAAAATATT--------TT-T--ATTGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAACGAATATT---------------------------------------------------AA-------AATT--------------------------------TGC---------AGTCACACACGC-----------------------------------------TTAT--GC--------------A----TCGCTCTTTCTCTGTC----TCTCT-------CT---------CTCTCTCTTATATATATATATTTATATAGATATCCGTTAGCTGTGGCT-----------------AAAAA
droGri2 scaffold_14853:5836292-5836463 + AGGCA--AGACATT-T----------------------------------ACT---------------------------------C------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------AAATCGATGAATA--------ATAATATTTC----------------------------------------------------ACATTATAATT---------------------------------------------------TAGTTTTTTTTGGATAA------------------------------------------------------------------------TTTCGTATGGATTTT---------------------------------------------------AT-------TAAT--------------------------------------------------------------------------------------------------------------GATTTCTCTCTCTGTTTATCTGTCT----T----G--------------------------------TGC----AGTCGCACCAGAAATTCTTTGAGCTGCTAATGAAAACTCAGATGTTC-ATTCG
droWil2 scf2_1100000004909:8654847-8655025 + TAAAT--TATAAGT-A----------------------------------AGT---------------------------------TATG---------------------------TCA------------------------------------------------AGTCGATAATGGATCGTGATTTATCAATTTACAACCTTAAAACA-------------------------------------------------------------------------ATTTCGTAATAAATA----------TTTAGATATATT--------TTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTATAAATTGCCTCTAAGAAGGAA--ACAATATGC----------------------------------------CT-------------------------------------------TATGGCTGTCTCT--------------CTCTTTCTTTCTTTC----CC----TCTCG-------CT-----C----T---------------------------------------------------------------CACTT
dp5 2:18421081-18421260 + TGGTT--CACAAAT-C----------------------------------ACT---------------------------------C--------------------------------------------------------GGTAGTGGAAAATAATT---A---AT------------------------------------------G-----------------------------------CTGAAGTAGTGTT---------TGTAAGTGGCTCAATG---------------ACTTGATTAAT-------------------------------TT-----------TT-------ACGTGATTACTTAAATTGTGCAGTTTTA---------------------------------------TT-----------GC----------CCTTTTC------------------------------------------------------------------------------------GCCCGGCAATCGTC-------------------------------------------------------------------TCTCT-----------------------------------------------CT----------CTCTC----TCTCTCTGTCT----CTTTC----------------CCTGTCGTTCG-----------------------------------------------------------C-GTAAT
droPer2 scaffold_3:5419081-5419294 + CGTAA--TACCCTT-T----------------------------------ACA---------------------------------G------------------------------GGAACCCACCCAGGGCACAGAGGATGTGCG-------------------------------------------------------------------------------ATGTGCGATGTGCGAAATGGTGGG---------------------------------------------AAATA----------CTGGGGAAGCCC--------ATGC-----------ACAAATATCATG-------AAAAGGCATCTACGAGTA--------TATAC------CCCATCTTCTGTCTGCCCTAGACAGCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------T--------------------------------------------------CCACTCT----------CTCTCTCGGTTTCTCTC----TCCCTCTATC----GCTCTC----------------CTTTTCCTTC--------------------------------------------------------------CTACA
droAna3 scaffold_12380:17881-18098 - TATTTGGCTCAACT-TTATTTATTACGTTAGCAGTGGAATCCACTGACTTAAC-------------------------------------------------------------------------GTA----------------------G------CCACTATAGCC--------------------------ATTGTT------------------------------------------------------GTTTT---------TGTAAAATTATAATTA---------------TAATTTTT-------------------------------AATTTTT--------------------------------------------TAGTCATAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTC-------------------A----------------------------------------CC--TATGTATTTCCTCACTCAATTTACTTATCGAATTACTTCTCA----------TCTATT----------C----TTTCTTATATT----T----T--TTTTGTTTC----TTTTACATTTG-----------------------------------------------------------TCCTGCC
droBip1 scf7180000396580:1348345-1348475 - TAACA--CGAGATT-T----------------------------------GTG---------------------------------TTTCA--------------------------AGG--TT---AA---------------ATAA----------TT---G---AAATTGATAACATATAAGAAGCTCGGACGTTTTTATTTTTGACCA-------------------------------------------------------------------------ATATTTTAAAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------TTT--------------------------------------------A-------CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGATTCAAAAATCTTGCATTT-GACGA
droKik1 scf7180000302610:892666-892861 - TTAAA-ATTTAAGT-T----------------------------------------------------------------------TTTAAAATTTAAAGTATCGAAAAATAT----CAAT-------------------GTTATCGATAAAATAT-----------------------------------------------CTAA-AACAATTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------ACAATTTATTT----------------------------GAATTTTTTAAGCATTATA---------------TTT--AAAAT---------------------------------------ATTTAA--AAAATTTAATTTTTAA-------------------------------------------------------------------AAACTTCTCTCT----------CTCTCT----------C----TTTTCCTTTCT----C----T--CGCTATCTC----TTTTTCTTTGA-----------------------------------------------------------T-GCAGT
droFic1 scf7180000453973:143441-143558 - TTAGC--TTTAAGC-A----------------------------------AAA---------------------------------TTTA---------------------------AAAT----------------------GATAGTGGAAAATAAAG--------------------------------------------------CAAAAC-------------------------------------TA-----------------------------------------------------------------------------------------TT-GAATTTAATT-------TTAA--------------------------------------------------------------------GGCCTTTTTATAATTTGT-----------------------ATGTTTAT---------------------------------ATT--AAAAA--------------------------------------------------ACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAAATA-----------------AATTT
droEle1 scf7180000491028:965132-965332 + TGGAT--AT-AGTT-G----------------------------------AAA-----------TAAATAA----------------------------------------------------------------------------AT----------G---G-------------------------------------------------------------------------------------------GT---------ATTTCTGGACA--------GCAAAGTC-------TCTTTATAAATTATATTATTTT--------T-------------------------------------------TTGAGTTATGAAACTTTA---------------------------------------------------------------------------------------------------------------AATTGAACTTACCTTT--AGCCTCATCATCGGTAGTTGCTGTAGATGTGGATGCTGCAGCT-------------------C----------------------------------------CC-----------------------------------------TGTGCATCCTTTTCC----------TTCTC----TTTTTCTTTC----TC----TCTCT-------CCTT---TTC--C-------------------------------------------------------------C-TTTGT
droRho1 scf7180000777112:12033-12287 - TTTAA--TATAAAT-T----------------------------------AGA---------------------------------CTTA---------------------------TAGATT--------------------TGTATTAAAAAAAATGG--------------------------------------------------TCTGCT-------------------------------------TA----T-TAAAAGCA--------GTACAAAA---------------TCGG------------------------------------------------------------------------------------------------------------------------------------GATCATTTCGTAATT------TATTACTAATCAACATTTTC----TTGAATCTTTTTTAACATTTGA---------------AAT--ACAGA---------------------------------------ATAAAA--ATAATATGATTTTTCCCAAATTCTTATCAACATTTAT---------TATTATCAATGA-----------------------------------------TTTT--GT--------------------------TTC----GC----TCTGT-------AT-----A----T-----------------CTTTATATAG-------TGAGATCCTGACGAAAGTCCCCAAGTTT-GTTAT
droBia1 scf7180000301645:5413-5576 - CGAAA--GAATTTT-G--------------------GTGTTCACCGACTTAAA---------------------------------A------------------------------AAAA---------------GATACTTTGCAATAAAAAAA-----------------------------------------------CTTT-AACA-----------------------------------GGCAAACATCCTTTTA-AAA-------------------------------------------TCAAAAAACATC--------TC-T--ATTGCTC----------------------------------AATTGTGAA---------------------------------------------------------------------------------------------------------------TTTTTAAATTGATTTT---------------------------------------------------TT-------AAATAAAATAT----------------------------A------------------------------------------------------------------------------------------------------TTTTAT----------------GATTTTCTTA--------------------------------------------------------------CCCTC
droTak1 scf7180000414002:5515-5680 - TAGAA--TAATAAATA----------------------------------AGT---------------------------------ATTA---------------------------AAATATA---TA---------------A-------------AA-------------------------------------------------------------------------------------------------------------------------------GTA-------------------------------------------------AACCTTTTAAACTAAGATTAAAGCTT-------------------------CATAT------TTAA--------TTACCTCATATAATCAAAATATCCTT-----TCCCATTTAGTC----------------------------ACACTTGT--------------------------T------------------------------------------------------GAGCAACCCA----------------------------CT---------AATATCTAT-----------------------------------------CCTTTG--CT--------------------------CAC----CC----ACTCC-------CT-----A----T---------------------------------------------------------------CTCTC
droEug1 scf7180000409509:657925-658082 - CACAG--TTTAAAC-GTTTCGAATTCATC------------------------------------------------------------------------------------------------------------------GATAATAA-----------------------------------------------------------------------------------------------------------------AAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATGCGGAT-----TTTTTCTTAGAC----------------------------AAGTTTCT--------------------------A--GTGAATAATAATAAAATGAATTCC--ACACATTAATTGCA-------------------------------------------------------------------TTTTT-----------------------------------------------CT----------ATCTC----GTTCTCTGTCT----C----TTTC------------TCTATCTCTAT-----------------------------------------------------------CTCTATC
dm3 chr3R:14084683-14084849 - AAAAG--GATGCTC-A----------------------------------TTA---------------------------------CTTTT----------------------AGTAAAATGTCTTATA------------------G----------AG--------------------------------------------------CAAATTGGTTTATATTTATTTTTTAACGTAT---CTAAAC-------------------------------------AAA-------------------------------------------------AACTTTT--------------------------------------------TTAACATCATTT-----------------------------------------------------------------------------------------C--------------------------T--GATATCATTAACTATATCAACTCTATATATTTATACTACAACTATATACTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTATG-----------------------------------------------------------T-ACAAC
droSim2 2r:648192-648261 + TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTATCTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGATT
droSec2 scaffold_59:57281-57414 + TGCAA--TATGATC-T----------------------------------ACT---------------------------------A------------------------------AAATATTATTTA----------------------A------AAATTATTGCC-----------------ATTAATT----------------------------ATATTTTTTTTTACATATGT---GTTGGC---------------------------------------------AAATA----------ATTAAATACCGT--------TTAC-----------ATATTTACATTT-------ATGTTACAATTAGCAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA------------------------------------------------------------------ATATG
droYak3 v2_chrUn_4039:8952-9120 - TAATT--TGTGACC-T----------------------------------CACAATAATTACAATAATTATATTAGTTTGTGACCTCTTAAAACTAA--------------------CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAATGAAAACGGGTTA--AAACGCTT--------------------------------------------TAAAAATAATTTTTATCGATTGCCTA-------------------------------------------------------------------------------CCATTAAAAATCGATTTT---------------------------------------------------TT-------CGAT--------------------------------------------------------------------------------------------------------------T--------T----CCACCCTTAC----CC----TTTGT-------GT-----A----C---------------------------------------------------------------CTCTT
droEre2 scaffold_4784:24333031-24333153 + CACAA--TTAAATC-T----------------------------------GAG---C-----------------------------TGTA---------------------------CAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------TGTT-----TCTCATTTACGT-----------------------AAATAT---------------------------------GCA----------------------------------------------------GAGAAGCTGA----------------------------GGGATCATTTAATCTTACCTTT---------------------------------------CTCT----CT--------------C----TCACTCTTTCTCTCTC----TCTCT-------CT---------CTCT----------------------------------------------------------------CT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGAAA--TATGATT-C----------------------------------ACA---------------------------------CTTA---------------------------AGACGTT---CA---------------ATAGT----------G---G----------------------------------------------------------------------------------------------------AAATTGATGAATA--------ACAAAACC-------TCT------------------------------------------T--------------------------------------------CGTAC------ACAATT-------------------------------------TT----------CTCTTAGCAATAAACATTTTTATATTTACATTTACATTACGATTTAAAATGGATTTT---------------------------------------------------AT-------GAATAACATAC----------------------------T--------------------------------------------------CCCCTCTATCTCCTTCTCA----------CCCTC----TCCCTCTGTC----TCTCTC----------------TTTCTCATTTG------TAC----AGTCGCACCAGAAATTCTTTGAGCTGCTGATGAAAACCCAAATGTTC-ATTAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTACGATTTAAAATGGAT................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGATGAAAACCCAAATGTTC-.....2411.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
TGAGG--TGCCACA-C----------------------------------AAA---------------------------------A------------------------------TAAAGC--------------------TGCAATAAAAAAT-----------------------------------------------TGCA-----------------------------------------------------------------AAAAA--------ATAAAATTATATATA----------TTTAAAAATATT--------TT-T--ATTGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAACGAATATT---------------------------------------------------AA-------AATT--------------------------------TGC---------AGTCACACACGC-----------------------------------------TTAT--GC--------------A----TCGCTCTTTCTCTGTC----TCTCT-------CT---------CTCTCTCTTATATATATATATTTATATAGATATCCGTTAGCTGTGGCT-----------------AAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGGCA--AGACATT-T----------------------------------ACT---------------------------------C------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------AAATCGATGAATA--------ATAATATTTC----------------------------------------------------ACATTATAATT---------------------------------------------------TAGTTTTTTTTGGATAA------------------------------------------------------------------------TTTCGTATGGATTTT---------------------------------------------------AT-------TAAT--------------------------------------------------------------------------------------------------------------GATTTCTCTCTCTGTTTATCTGTCT----T----G--------------------------------TGC----AGTCGCACCAGAAATTCTTTGAGCTGCTAATGAAAACTCAGATGTTC-ATTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAAAT--TATAAGT-A----------------------------------AGT---------------------------------TATG---------------------------TCA------------------------------------------------AGTCGATAATGGATCGTGATTTATCAATTTACAACCTTAAAACA-------------------------------------------------------------------------ATTTCGTAATAAATA----------TTTAGATATATT--------TTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTATAAATTGCCTCTAAGAAGGAA--ACAATATGC----------------------------------------CT-------------------------------------------TATGGCTGTCTCT--------------CTCTTTCTTTCTTTC----CC----TCTCG-------CT-----C----T---------------------------------------------------------------CACTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TGGTT--CACAAAT-C----------------------------------ACT---------------------------------C--------------------------------------------------------GGTAGTGGAAAATAATT---A---AT------------------------------------------G-----------------------------------CTGAAGTAGTGTT---------TGTAAGTGGCTCAATG---------------ACTTGATTAAT-------------------------------TT-----------TT-------ACGTGATTACTTAAATTGTGCAGTTTTA---------------------------------------TT-----------GC----------CCTTTTC------------------------------------------------------------------------------------GCCCGGCAATCGTC-------------------------------------------------------------------TCTCT-----------------------------------------------CT----------CTCTC----TCTCTCTGTCT----CTTTC----------------CCTGTCGTTCG-----------------------------------------------------------C-GTAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................AT------------------------------------------G-----------------------------------CTGAAGTAGTGTT---------TGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
droPer2
CGTAA--TACCCTT-T----------------------------------ACA---------------------------------G------------------------------GGAACCCACCCAGGGCACAGAGGATGTGCG-------------------------------------------------------------------------------ATGTGCGATGTGCGAAATGGTGGG---------------------------------------------AAATA----------CTGGGGAAGCCC--------ATGC-----------ACAAATATCATG-------AAAAGGCATCTACGAGTA--------TATAC------CCCATCTTCTGTCTGCCCTAGACAGCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------T--------------------------------------------------CCACTCT----------CTCTCTCGGTTTCTCTC----TCCCTCTATC----GCTCTC----------------CTTTTCCTTC--------------------------------------------------------------CTACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TATTTGGCTCAACT-TTATTTATTACGTTAGCAGTGGAATCCACTGACTTAAC-------------------------------------------------------------------------GTA----------------------G------CCACTATAGCC--------------------------ATTGTT------------------------------------------------------GTTTT---------TGTAAAATTATAATTA---------------TAATTTTT-------------------------------AATTTTT--------------------------------------------TAGTCATAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTC-------------------A----------------------------------------CC--TATGTATTTCCTCACTCAATTTACTTATCGAATTACTTCTCA----------TCTATT----------C----TTTCTTATATT----T----T--TTTTGTTTC----TTTTACATTTG-----------------------------------------------------------TCCTGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
TATTTGGCTCAACT-TTATTTATTACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153030000
.........CAACT-TTATTTATTACGTTAGCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
..................TTTATTACGTTAGCAGTGGAATCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........TCAACT-TTATTTATTACGTTAGCAGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
.............T-TTATTTATTACGTTAGCAGTGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..........AACT-TTATTTATTACGTTAGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTATCGAATTACTTCTCA----------TCT...................................................................................................................................24200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTATCGAATTACTTCTCA----------TC....................................................................................................................................24200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTATCGAATTACTTCTCA----------TCTAT.................................................................................................................................27200.051010000
...................TTATTACGTTAGCAGTGGAATCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.............T-TTATTTATTACGTTAGCAGTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.........CAACT-TTATTTATTACGTTAGCAGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.ATTTGGCTCAACT-TTATTTATTACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
......................TTACGTTAGCAGTGGAATCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
droBip1
TAACA--CGAGATT-T----------------------------------GTG---------------------------------TTTCA--------------------------AGG--TT---AA---------------ATAA----------TT---G---AAATTGATAACATATAAGAAGCTCGGACGTTTTTATTTTTGACCA-------------------------------------------------------------------------ATATTTTAAAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------TTT--------------------------------------------A-------CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGATTCAAAAATCTTGCATTT-GACGASizeHit CountTotal NormTotal
No Reads
droKik1
TTAAA-ATTTAAGT-T----------------------------------------------------------------------TTTAAAATTTAAAGTATCGAAAAATAT----CAAT-------------------GTTATCGATAAAATAT-----------------------------------------------CTAA-AACAATTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------ACAATTTATTT----------------------------GAATTTTTTAAGCATTATA---------------TTT--AAAAT---------------------------------------ATTTAA--AAAATTTAATTTTTAA-------------------------------------------------------------------AAACTTCTCTCT----------CTCTCT----------C----TTTTCCTTTCT----C----T--CGCTATCTC----TTTTTCTTTGA-----------------------------------------------------------T-GCAGTSizeHit CountTotal NormTotal
No Reads
droFic1
TTAGC--TTTAAGC-A----------------------------------AAA---------------------------------TTTA---------------------------AAAT----------------------GATAGTGGAAAATAAAG--------------------------------------------------CAAAAC-------------------------------------TA-----------------------------------------------------------------------------------------TT-GAATTTAATT-------TTAA--------------------------------------------------------------------GGCCTTTTTATAATTTGT-----------------------ATGTTTAT---------------------------------ATT--AAAAA--------------------------------------------------ACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAAATA-----------------AATTTSizeHit CountTotal NormTotal
No Reads
droEle1
TGGAT--AT-AGTT-G----------------------------------AAA-----------TAAATAA----------------------------------------------------------------------------AT----------G---G-------------------------------------------------------------------------------------------GT---------ATTTCTGGACA--------GCAAAGTC-------TCTTTATAAATTATATTATTTT--------T-------------------------------------------TTGAGTTATGAAACTTTA---------------------------------------------------------------------------------------------------------------AATTGAACTTACCTTT--AGCCTCATCATCGGTAGTTGCTGTAGATGTGGATGCTGCAGCT-------------------C----------------------------------------CC-----------------------------------------TGTGCATCCTTTTCC----------TTCTC----TTTTTCTTTC----TC----TCTCT-------CCTT---TTC--C-------------------------------------------------------------C-TTTGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTAA--TATAAAT-T----------------------------------AGA---------------------------------CTTA---------------------------TAGATT--------------------TGTATTAAAAAAAATGG--------------------------------------------------TCTGCT-------------------------------------TA----T-TAAAAGCA--------GTACAAAA---------------TCGG------------------------------------------------------------------------------------------------------------------------------------GATCATTTCGTAATT------TATTACTAATCAACATTTTC----TTGAATCTTTTTTAACATTTGA---------------AAT--ACAGA---------------------------------------ATAAAA--ATAATATGATTTTTCCCAAATTCTTATCAACATTTAT---------TATTATCAATGA-----------------------------------------TTTT--GT--------------------------TTC----GC----TCTGT-------AT-----A----T-----------------CTTTATATAG-------TGAGATCCTGACGAAAGTCCCCAAGTTT-GTTATSizeHit CountTotal NormTotal
No Reads
droBia1
CGAAA--GAATTTT-G--------------------GTGTTCACCGACTTAAA---------------------------------A------------------------------AAAA---------------GATACTTTGCAATAAAAAAA-----------------------------------------------CTTT-AACA-----------------------------------GGCAAACATCCTTTTA-AAA-------------------------------------------TCAAAAAACATC--------TC-T--ATTGCTC----------------------------------AATTGTGAA---------------------------------------------------------------------------------------------------------------TTTTTAAATTGATTTT---------------------------------------------------TT-------AAATAAAATAT----------------------------A------------------------------------------------------------------------------------------------------TTTTAT----------------GATTTTCTTA--------------------------------------------------------------CCCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TAGAA--TAATAAATA----------------------------------AGT---------------------------------ATTA---------------------------AAATATA---TA---------------A-------------AA-------------------------------------------------------------------------------------------------------------------------------GTA-------------------------------------------------AACCTTTTAAACTAAGATTAAAGCTT-------------------------CATAT------TTAA--------TTACCTCATATAATCAAAATATCCTT-----TCCCATTTAGTC----------------------------ACACTTGT--------------------------T------------------------------------------------------GAGCAACCCA----------------------------CT---------AATATCTAT-----------------------------------------CCTTTG--CT--------------------------CAC----CC----ACTCC-------CT-----A----T---------------------------------------------------------------CTCTCSizeHit CountTotal NormTotal
No Reads
droEug1
CACAG--TTTAAAC-GTTTCGAATTCATC------------------------------------------------------------------------------------------------------------------GATAATAA-----------------------------------------------------------------------------------------------------------------AAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATGCGGAT-----TTTTTCTTAGAC----------------------------AAGTTTCT--------------------------A--GTGAATAATAATAAAATGAATTCC--ACACATTAATTGCA-------------------------------------------------------------------TTTTT-----------------------------------------------CT----------ATCTC----GTTCTCTGTCT----C----TTTC------------TCTATCTCTAT-----------------------------------------------------------CTCTATCSizeHit CountTotal NormTotal
No Reads
dm3
AAAAG--GATGCTC-A----------------------------------TTA---------------------------------CTTTT----------------------AGTAAAATGTCTTATA------------------G----------AG--------------------------------------------------CAAATTGGTTTATATTTATTTTTTAACGTAT---CTAAAC-------------------------------------AAA-------------------------------------------------AACTTTT--------------------------------------------TTAACATCATTT-----------------------------------------------------------------------------------------C--------------------------T--GATATCATTAACTATATCAACTCTATATATTTATACTACAACTATATACTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTATG-----------------------------------------------------------T-ACAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTATCTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCTTTTCTTACATA..................................................................................................................................................................................................................................................................................................................................1979.14640000323200000000000
TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTC............................................................................................................................................................................................................................................................................................................................................................2524.50900010061000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2623.50700000000160000000
...........AAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................2053.201600010044007000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2523.00600000002040000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.2723.00600000002130000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2623.00600000000050010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2523.00600000031020000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.2522.50500000000131000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.2822.50500000000040010000
....T--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACA......................................................................................................................................................................................................................................................................................................................................................2722.00400000001300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2421.50300000001020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2721.50300000001110000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCCGTACATTTTTATCTTTTCTTA......................................................................................................................................................................................................................................................................................................................................2821.50300000001110000000
.TCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCG..........................................................................................................................................................................................................................................................................................................................................................2621.50300000000030000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATCTTTTCTTACATA..................................................................................................................................................................................................................................................................................................................................2171.29900010035000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2921.00200000011000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.2421.00200000000110000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTACATTTTTATCTT............................................................................................................................................................................................................................................................................................................................................2821.00200010000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTACA......................................................................................................................................................................................................................................................................................................................................................1821.00200000000002000000
........GAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACA......................................................................................................................................................................................................................................................................................................................................................2521.00200000000101000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2721.00200000000020000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2121.00200000020000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------T....2721.00200000001100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------T....2821.00200000002000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TG...2621.00200000000110000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACATTTTTATCTTTTCTTACATA..................................................................................................................................................................................................................................................................................................................................2621.00200000000010010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATCTTTTCTTACATATTCTGA............................................................................................................................................................................................................................................................................................................................2621.00200000000020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTACATTTTTATCTTTTCTTACA....................................................................................................................................................................................................................................................................................................................................2821.00200000001010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------T....2521.00200000011000000000
...........AAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................1950.80400000000004000000
............AT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................1950.60300000001002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.1650.60300000000003000000
...............T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................1670.57400000000004000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------T....2620.50100000010000000000
.............T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACAT.....................................................................................................................................................................................................................................................................................................................................................2120.50100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----.....................................................................2820.50100000001000000000
.............T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTATCT.............................................................................................................................................................................................................................................................................................................................................2920.50100000000100000000
...............T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTATCTT............................................................................................................................................................................................................................................................................................................................................2920.50100000000100000000
TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTAC.......................................................................................................................................................................................................................................................................................................................................................3020.50100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTTACATATTCTGATTC.........................................................................................................................................................................................................................................................................................................................2120.50100100000000000000
.TCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................2820.50100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTAC.......................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
..CGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................2720.50100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATCTTTTCTTACATATTC...............................................................................................................................................................................................................................................................................................................................2320.50100000000000001000
...GT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................2620.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.1820.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTCCGTACATTTTTATCTTTT..........................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------T....2120.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTTTCTTACATATTCTGA............................................................................................................................................................................................................................................................................................................................2220.50100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.1920.50100000000001000000
...............T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTAA...............................................................................................................................................................................................................................................................................................................................................2620.50100000000000010000
.............T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTA................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2020.50100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGA..2720.50100000000100000000
...............T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTA.................................................................................................................................................................................................................................................................................................................................................2420.50100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTCCGTACATTTTTATC..............................................................................................................................................................................................................................................................................................................................................2120.50100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------.....2420.50100000000010000000
........GAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATT....................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGT.............................................................................................................................................................................................................................................................................................................................................................2420.50100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTACATTTTTATCTTTTCTTA......................................................................................................................................................................................................................................................................................................................................2620.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTACATTTTTATC..............................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
............AT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTT..................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTACATATTCTGATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----A----T---------------------------------------------------------------TGAT.2920.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTACATTTTTATCTTT...........................................................................................................................................................................................................................................................................................................................................2920.50100000000010000000
.TCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTG............................................................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
............AT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTACATTTTTA................................................................................................................................................................................................................................................................................................................................................2720.50100000000000010000
TTCGT--AGAAAAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCG..........................................................................................................................................................................................................................................................................................................................................................2720.50100000001000000000
...............T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................1750.40200000000002000000
...........AAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCG..........................................................................................................................................................................................................................................................................................................................................................1850.40200000000002000000
...........AAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCC...........................................................................................................................................................................................................................................................................................................................................................1750.40200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................1650.40200000000002000000
.............T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................1770.29200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATCTTTTCTTACATAT.................................................................................................................................................................................................................................................................................................................................2170.29200000001000001000
...........AAT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTC............................................................................................................................................................................................................................................................................................................................................................1650.20100000000001000000
.............T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGTA........................................................................................................................................................................................................................................................................................................................................................1850.20100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------CCATTGTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................1570.14100000000001000000
............AT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................1870.14100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATCTTTTCTTACATA..................................................................................................................................................................................................................................................................................................................................2070.14100010000000000000
............AT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------CCATTGTGTCCG..........................................................................................................................................................................................................................................................................................................................................................1770.14100000000001000000
droSec2
TGCAA--TATGATC-T----------------------------------ACT---------------------------------A------------------------------AAATATTATTTA----------------------A------AAATTATTGCC-----------------ATTAATT----------------------------ATATTTTTTTTTACATATGT---GTTGGC---------------------------------------------AAATA----------ATTAAATACCGT--------TTAC-----------ATATTTACATTT-------ATGTTACAATTAGCAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA------------------------------------------------------------------ATATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAATT--TGTGACC-T----------------------------------CACAATAATTACAATAATTATATTAGTTTGTGACCTCTTAAAACTAA--------------------CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAATGAAAACGGGTTA--AAACGCTT--------------------------------------------TAAAAATAATTTTTATCGATTGCCTA-------------------------------------------------------------------------------CCATTAAAAATCGATTTT---------------------------------------------------TT-------CGAT--------------------------------------------------------------------------------------------------------------T--------T----CCACCCTTAC----CC----TTTGT-------GT-----A----C---------------------------------------------------------------CTCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---------------------------------------------------TT-------CGAT--------------------------------------------------------------------------------------------------------------T--------T----CCACCCTTAC----CC----TTTG.........................................................................................27200.15303000000000
.........................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------TAAAAATAATTTTTATCGATTGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................26200.10200200000000
........................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAATGAAAACGGGTTA--AAACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------T--------T----CCACCCTTAC----CC----TTTGT-------GT-----A----C---------------------------------------------------------------C....25200.05100100000000
..............................................................................................................................................................................................................................................................................................................................TTCAATGAAAACGGGTTA--AAACGCTT--------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
................................................................TAATTATATTAGTTTGTGACCTCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
......................................................................................................................AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAATGAAAACGGGTTA--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEre2
CACAA--TTAAATC-T----------------------------------GAG---C-----------------------------TGTA---------------------------CAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------TGTT-----TCTCATTTACGT-----------------------AAATAT---------------------------------GCA----------------------------------------------------GAGAAGCTGA----------------------------GGGATCATTTAATCTTACCTTT---------------------------------------CTCT----CT--------------C----TCACTCTTTCTCTCTC----TCTCT-------CT---------CTCT----------------------------------------------------------------CTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGT-----------------------AAATAT---------------------------------GCA----------------------------------------------------GAGAAGCTGA----------------------------GGGA.......................................................................................................................................................................................................2811.0011000000

Generated: 05/17/2015 at 03:30 AM