dvi_1331

Name	Class	Family	Strand
(CATATA)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTTTATAATACTGAAAATGTTCGCAATTCCTTTTTAATGGGATATATATATATACATATACATATACATATACATATACATATATACATATATAAATATGAAACTATGCTTAACACGGTCACAACATTTATCAATTCCACATTTAAGTCTCTTAACCAAATATGAAGCACTTTAATTAAAACACAACTATCTCTTCACAGACCACACAATCGAATGCCAGCCATGTGCTGTTGCGTAATGTTCCCACCTC ************************************************...........(((((..(((((..((((....))))..)))))..)))))......(((((.....(((......(((((.............)))))......))).......)))))...............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V047 embryo	SRR060667 160_females_carcasses_total	M047 female body	SRR060666 160_males_carcasses_total
.............................................................................................................................................................................TAATTAATACAGAACTACCTC.........................................................	21	3	5	0.20	1	1	0	0	0
...............................................................TATACATATACATATACATATATAC...................................................................................................................................................................	25	0	7	0.14	1	0	1	0	0
..................................................ATATACATATACATATACATATACATATA............................................................................................................................................................................	29	0	20	0.05	1	0	0	1	0
...................................................................................................................................................................................................................................GCTGTTGCTTTATGTTCC......	18	2	20	0.05	1	0	0	0	1

AAAAATATTATGACTTTTACAAGCGTTAAGGAAAAATTACCCTATATATATATATGTATATGTATATGTATATGTATATGTATATATGTATATATTTATACTTTGATACGAATTGTGCCAGTGTTGTAAATAGTTAAGGTGTAAATTCAGAGAATTGGTTTATACTTCGTGAAATTAATTTTGTGTTGATAGAGAAGTGTCTGGTGTGTTAGCTTACGGTCGGTACACGACAACGCATTACAAGGGTGGAG ************************************************...........(((((..(((((..((((....))))..)))))..)))))......(((((.....(((......(((((.............)))))......))).......)))))...............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060685 9xArg_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	V116 male body	SRR060687 9_0-2h_embryos_total	SRR060680 9xArg_testes_total	SRR060686 Argx9_0-2h_embryos_total	V047 embryo	SRR060658 140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060684 140x9_0-2h_embryos_total
................................................................................................................TTGAGCCAGTGTTGGAAATA.......................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................TGAGCCAGTGTTGGAAATA.......................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TGAGCCAGTGTTGGAAATAC......................................................................................................................	20	3	4	0.75	3	0	1	0	0	1	1	0	0	0	0
................................................................................................................TTGAGCCAGTGTTGGAAATAC......................................................................................................................	21	3	3	0.67	2	0	0	1	1	0	0	0	0	0	0
..................................................................................................................................................TCACAGCATTGGTTTGTACTT....................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCTTAGCTTCCGGTCGATAC.........................	20	3	9	0.11	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................AGAATCGGGTTCTACTTCGT.................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................GTTGTAAATGGTAAGGGTGTA............................................................................................................	21	3	19	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................TATATGTATATGTATATGTAT..............................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................AAAAATTCTGCCAGTGTTG.............................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12723:2086808-2087058 +	dvi_1331	TTTTTATAATACTGAAAATGT------TCGCAA---T--------------------TCC----------------------------------------------------------------------------------------TTTTTAATGGGAT--------ATAT--------A----------TATATACAT---------------------------------ATACATATACATA--TACATATAC--ATAT--ATACATAT--ATA--AATATGA----AACTATGCT---------TAAC--------------------A--------------------------CGGTCACAACA--------------------------------------------------TTTATCAAT-TC--CACATTT---------------------------------------AA-------------------------------------------------------GTCTCT--------------------------TAACCAAATATGAAGCACTTTAATTAAAACACAACTATCTC--------------------TTCACAG--AC-C-----------------------------------------------------------A-------CACAATCGAATGCCAGCCATGTGCTGT-------------TGCGTAATGTTC---------------------------------------------CCACCTC
droMoj3	scaffold_6540:15190672-15190896 +		ATTTTATCCGT---------T-------TC--------------------------------------------------------------------------------------------------------------------------------TG----------TAT--------ATGTA------TAT----AT--GT-----------------------------ATATATGCGT--A--TATAT--ACATATAT--GTATATGC--ATA--TATA--CAC--A---------------------TATATAT------------TT----------ATATTTATATAATTTTTT-----------------------------------------------------------------------------------------------------------------ATTTATAAATATAAA--TAACAAAATGTTTCGCATTGAAGCTTCTTTATGCATTC----------------------------------------------------------------------ATTACTATATT--------------------TTAATAC-----G--------------------------------------A-------------TTTATACTAATGCCGTTTTGTTG---------------CT-TCGATTTGTTTATTT-------GTTT---------------------------------------------TCATTTT
droGri2	scaffold_15245:6338291-6338506 +		TCCCTATATAA---------AA----------------------------------------------------------------------------------------------------------------CGTTAATATTA---------------TAATTAAATATAT--------A----------TATAT--AT--AT-----------------------------AT----------A--TATATATAT--ATAC--ATATATAT--ATGTATATG--TAGCT----AT-----------------ATATAT------------TT--------------------------CTGCTAT---------GCACTT-------T----------------------------------ACCAA------TC--------G---------C--------------TGTTTATATCTAAATGTT-----AACAAAAT-------------------------------------------TGTTA--TGCAATATTTTTGTTTACC----TAAAT----CAT-----------AGTTTAACCAAATT--------------------TTGACAAGCAC-T-----------------------------------------------------------A-------TGCAAACGAA-------------------------------------------------------------------------------------------AGC
droWil2	scf2_1100000004943:8156216-8156376 +		ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------A----------TATATATAT---------------------------------ATATATATACATATCTAAAT--ACATACAT--ACATATAC--ATA--CATA--CAA--A---------------------AATATAT------------TT----------A---TTAT-------------ACATCT--------------------------------------------------ATTTATAAT-GT--TAA---------------------------------------------------ACTTAACAAAATATG-CAAATAAAAAT------------CC----------------------------------------------------------------------ACAACTTT-----------------------TTCATAAACAACA-----------------------------------------------------------A-------AAAAAGC------------------------------------------------------------------------------------------GAATGTC
dp5	Unknown_group_377:541-743 -		TTGTTAAAAAA---------C------TTAAAA---T--------------------CG-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TATAT---------------------------------------ATAT--A--TATATATAT--ATAT--ATATATAT--ATACATATC--CAATA----ATATACAATATGCTTAAA--------------------A--------------------------ATTT-------------------------CGTAAAATTTTTAAACAACTTATTTAGCATAGTCTTACAAC-CC--TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------CA-CTATAAAATTAAT-------------------------------------------------------------T---------------------------------------------AAAGTAC
droPer2	scaffold_77:129186-129309 +		TCTATATATAC---------A-----------GA----------------------------------------------------------------------------------------------------AACCAATTTTACAA-----------------------AT----ATATATACATGTGTATA--TATAT--ATAT---------------------------GTATATATAT--A--TATATGTAT--ATAT--ATATATAT--AT----ATA--TGA-------------------------A------------------------------------------------------------------------------------------------------------------------TA--------A---------ATG--TATGTAA---------------------AA--CGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATT
droAna3	scaffold_13337:19497106-19497261 +		AATTGCT--------------------GCTC--------------------------------------------------------------------------------------------------------------------------GATTTTAC--------ATAT--------A----------CATATACAT---------------------------------ATACATATATATA--TATAT--AT--ATATATTTAATAAA--ATG--TATATAA----TATATGCGT---------GTAT-ACACAT---------------------------------------------ACAAGGTTTATTCAATT-------C----------------------------------------ACACGTA--------G---------A-----------------------------------------------------------------------------------CG-TTTGTTA--AAAAATGCATTTTCTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA
droBip1	scf7180000396708:4605842-4606059 -		TTTTTAAAACA---------AAAGCTCTTG--------------------------------------------------------------------------------------------------------------------------------AAA--------AACG--------A----------TGG----TCTTAT-----------------------------ATATTTATATA----TTTGG--AAAGTTTC--AGTCA--GATTCA--CGGT--ATT--T----------------------TTGGTT-CAAAAGATTAAATCTTTCTTTAAT---TT----------TCTCAAAATTG--------------------------------------------------ATTTTTAAA-TT--CAAATCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTT-TAATTT--AT-AAATCAATATATAAAGCCTTTTAATTTTTGTAAAATA--------TTATC---------------------------------------------------------------------------------------------------------AGATCTCCCCAAATGAC
droKik1	scf7180000298888:6573-6742 -		ATAGAATT--------------------------------------------------------------------------------------------------------------GAACGCATTTATTAATTTTTAAAAGTA---------------TTATTTAAAATAC--------A----------TATAT--AA--ATAC---------------------------ATACATACAT--A--CACATACAT--GTAT--GTACATAC--ATA--CATATGT----A---------------------TGTACACA--TA------ATT--------------------------ACGCTGCATTG--------------------------------------------------TTTTTTAAT-TC--CAAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAGAA-CA---T-----A--------------------------------------AATTA-C------------------------------------------------------------------------------------------------------------------------TTTCAT
droFic1	scf7180000453476:4678-4847 +		TACTGCATATA---------T------TTCTAT---T--------------------TATTTT---------------------------------------------------------------------------------TAGG-----------AT--------TTAT--------ATTATTATATATA--TATAT--ATAT-------------------ATATTTGGCA----ATCG--A--TTAATTTATATATAC--ATATATAT--ATATATATA--TTG------ATATTTAATATAGTTAAA--------------------G--------------------------AT---------------------------------CATTT-------------------------------------------TAACGAACTTAAATTAGT-----------------------------------------------------------------------------------------------------------------TAAATATGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTAA
droEle1	scf7180000490220:19081-19343 -		TTCTTATAAAG---------AAACATAGGT--------AAATTTTTTTGTAACTATTTCTTAA---------------------------------------------AGATAGAGATAGCTATAAT-------------------------------------AAAG----------------TA--------------T--ATATGAAAATATTGCTTAGTTATGTGTTTTAGTTTTATTGT--G--TTTGT--GT--ATAT--ATGTATAT--ATA--AAAG--AGA-------------------------A----A----A------AAGATATCGTTATA---TTTTTCA-TGTTCTGGG----TA--------GTATATAAGACCAAGTAATCTTAGATAAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTACACAACTGTTAGGTACTAGAGCACATCGAATCAAAACAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTGT
droRho1	scf7180000779513:70856-71023 -		TTTTTTTAATC---------T-----------AAAACAAG---GT--------------TTTTTAATTGACCAAATATCATCGCTTACTTAAATAAATATTTTATAATTCATTATAATTATTAAAGT-------------------------------------TTAC----------------TT--------------T--AAATGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCCT-------------------------------------------TAAGTG---------------------------------------------------------------------------------------------TTA-------------------------------------------------------ATGTTTTT-----------------------TTTATAA--------------------------------------AATATAAATTTCTTGTTAAATGAAC-------------------------------------------------------------C---------------------------------------------AAAATTA
droBia1	scf7180000298858:2816-2951 +		TTATTATAATA---------TAACATCTAC--------------------------------------------------------------------------------------------------------------------------------TAT--------ATAT--------A----------TAT----ATATAT-----------------------------ATATATATATA----TATAC--ACATATAT--ACATA--TATGTA--CGCA--TAT--A---------------------CATATAT--AAA------A-------------------------------------------------------------------------------------------------------TA--------A---------ATA--TTTTAAA---------------------TA--TATCA------------------------------------------------------AAAAATTTAATTTAATAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT
droTak1	scf7180000413943:2642-2800 +		AAAGTCT--------------------TTGAAA---TAAG---CC--------------TTTT---------------------------------------------------------------------------------TAGC-----------GT--------CTAT--------ATA--------TATATATAT---------------------------------ATATATATATATATATAT----AT--ATAT--ATATATAT--ATA--CATA--TA-------------------------------T------------CC--------------------------ACGGTAG---------CCACTT-------CAAAAATTTTT-------------------------------------------TAAGCGAAATAAATA--T-----------------------------------------------------------------------------------------------------------------TAAAAATGAGCCAATT-----------------------------------------TGAATAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAA
droEug1	scf7180000409231:758384-758574 -		TGCCTATATCA---------TTATAAAACT--------AG---------------------------------------------------------------------------------------------------ATTTAATTG-----------------------AT----TTCGATATA------AA--TGTAA--ATAC---------------------------AA---------------------G--ATTT--TTTAA--------------------------------------------------------------------------T---TTAT-------------ACATGGTTTATTTTA----------------------------------------------TAA-TTTTGTA--------G---------C-----------------------------------------------------------------------------------CG-AAAGTGATAT----------------------A---------GGATTT----TAAAATATATTTTATTT--------------------TCAACAG--AC-A-----------------------------------------------------------A-------CCCAATCGAATGCCAGCCATGTCCTTT-------------TGAGAAATGTTC---------------------------------------------CAACCTC
dm3	chr4:118734-118941 +		TAAATCT--------------------TTACAATTGCATA---AT---------------------------------------------------------------------------ATATA-----------------------TATATAATAACAT--------ATATATATATATATATA----------T--AT--AT-----------------------------ATATATATAT--A--TATAT--ATATAT----ATATATATATGT----ATA--TAT-------------------------ACATAT--A--------------------------------------TATT------------------------------------------------------------------AA--TA--------A---------ATG--TATATAAATATATATATATGTAAATATA-------------------------AATATATATATATATATATATATATATATAT--------------------------ATACCAAATATGTAAAT------------------------------------------------------------------------------------------------------------------------ATTA-------------------------------------------------------------------------------------------------AATTAAA
droSim2	3l:22551593-22551741 -		ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------A----------TATATATAT---------------------------------ATATATATATATA--TATAT--AT--ATATATATATATAT--ATG--CATA--TAG-------------------------AGATAG--ATA------A--------------------------------------------------TGCGAATCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA----------------------------AATTCATTGATTT-------CTTTTCAAAACTAGGGTTAAGTATTTTGATATCCAAAGCATATCT-------GCCT
droSec2	scaffold_15:1926195-1926392 -		ACGAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--------A----------TATAT--AT--ATAT---------------------------GTATATATGT--A--TATATGTAT--ATAT--GTATATAC--ATA--CATATAT----A---------------------AATATACA--TA------A------------------------ATTTACGCTACACTA--------------------------------------------------GCTATTAAA-AC--TAAGTTA---A------------------------------------T-------GGTT-TTAC-------AAAAAA-------------------------------------------------------------------AAAACTTGCATCCGTTTTAATACAACTAC-----------------------TGCATAA--AA-C-----------------------------------------------------------G-------AATTATCGAGTGTCCGCTTTGTTTGTT-------------T-----------------------------------------------------------GTGT
droYak3	X:10562463-10562623 -		ACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------A----------TATATATAT---------------------------------ATACCTATATATA--TATAT--AT--ATATATATCCATAT--ACA---ATA--TAA-------------------------ACGGAT--C--------------------------------------TAAT------------------------------------------------------------------GT--TA--------A-------------------------------------------GCGTT-TCACACACG-GACACAACAAT------------TTACAAGA---CG-TTT----------ATGCATTTCGA--TTCAATGAAAAATCAAG--------------------------------------------A----ATAC-----G--------------------------------------A-------------ATAAT-------------------------------------------------------------A---------------------------------------------CAAATAT
droEre2	scaffold_4784:21623165-21623302 +		TGCTTAAAATA---------TTGTTTTTCT---------------------TCTATTTAATTC---------------------------------------------------------------------------------AAAC-----------A----------TAT--------A----------TATATATAT---------------------------------ATATATATAT--A--TATATATAT--ATAT--ATATATAT--ATATATATA--TAA-------------------------GTATATA--TA------A------------------------CTTTCCACT----GA--------TTTTATAAGTCCACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTTTTATAATACTGAAAATGT------TCGCAA---T--------------------TCC----------------------------------------------------------------------------------------TTTTTAATGGGAT--------ATAT--------A----------TATATACAT---------------------------------ATACATATACATA--TACATATAC--ATAT--ATACATAT--ATA--AATATGA----AACTATGCT---------TAAC--------------------A--------------------------CGGTCACAACA--------------------------------------------------TTTATCAAT-TC--CACATTT---------------------------------------AA-------------------------------------------------------GTCTCT--------------------------TAACCAAATATGAAGCACTTTAATTAAAACACAACTATCTC--------------------TTCACAG--AC-C-----------------------------------------------------------A-------CACAATCGAATGCCAGCCATGTGCTGT-------------TGCGTAATGTTC---------------------------------------------CCACCTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................TATACATA--TACATATAC--ATAT--ATAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATATACAT---------------------------------ATACATATACATA--TACATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTTTATCCGT---------T-------TC--------------------------------------------------------------------------------------------------------------------------------TG----------TAT--------ATGTA------TAT----AT--GT-----------------------------ATATATGCGT--A--TATAT--ACATATAT--GTATATGC--ATA--TATA--CAC--A---------------------TATATAT------------TT----------ATATTTATATAATTTTTT-----------------------------------------------------------------------------------------------------------------ATTTATAAATATAAA--TAACAAAATGTTTCGCATTGAAGCTTCTTTATGCATTC----------------------------------------------------------------------ATTACTATATT--------------------TTAATAC-----G--------------------------------------A-------------TTTATACTAATGCCGTTTTGTTG---------------CT-TCGATTTGTTTATTT-------GTTT---------------------------------------------TCATTTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TCCCTATATAA---------AA----------------------------------------------------------------------------------------------------------------CGTTAATATTA---------------TAATTAAATATAT--------A----------TATAT--AT--AT-----------------------------AT----------A--TATATATAT--ATAC--ATATATAT--ATGTATATG--TAGCT----AT-----------------ATATAT------------TT--------------------------CTGCTAT---------GCACTT-------T----------------------------------ACCAA------TC--------G---------C--------------TGTTTATATCTAAATGTT-----AACAAAAT-------------------------------------------TGTTA--TGCAATATTTTTGTTTACC----TAAAT----CAT-----------AGTTTAACCAAATT--------------------TTGACAAGCAC-T-----------------------------------------------------------A-------TGCAAACGAA-------------------------------------------------------------------------------------------AGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------A----------TATATATAT---------------------------------ATATATATACATATCTAAAT--ACATACAT--ACATATAC--ATA--CATA--CAA--A---------------------AATATAT------------TT----------A---TTAT-------------ACATCT--------------------------------------------------ATTTATAAT-GT--TAA---------------------------------------------------ACTTAACAAAATATG-CAAATAAAAAT------------CC----------------------------------------------------------------------ACAACTTT-----------------------TTCATAAACAACA-----------------------------------------------------------A-------AAAAAGC------------------------------------------------------------------------------------------GAATGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................TATAC--ATA--CATA--CAA--A---------------------AATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
................................................................................................................................................................................................................................................................ACATACAT--ACATATAC--ATA--CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

TTGTTAAAAAA---------C------TTAAAA---T--------------------CG-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TATAT---------------------------------------ATAT--A--TATATATAT--ATAT--ATATATAT--ATACATATC--CAATA----ATATACAATATGCTTAAA--------------------A--------------------------ATTT-------------------------CGTAAAATTTTTAAACAACTTATTTAGCATAGTCTTACAAC-CC--TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------CA-CTATAAAATTAAT-------------------------------------------------------------T---------------------------------------------AAAGTAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................G-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	3.60	72	0	68	4	0	0	0	0	0	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.50	30	0	0	0	0	0	0	0	29	0	1
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.20	24	0	2	0	0	0	0	0	22	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTC-CAAGCAG----------------------------------------------CA-CTATAAAATTA....................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................G-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.75	15	0	15	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTT-------------------------CGTAAAATTTTTAAACAACTTATT..................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------..................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTC-CAAGCAG----------------------------------------------CA-CTATAAAATT.....................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------CA-CTA............................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTTACAAC-CC--TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT..............................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------CA-C..............................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.50	8	0	1	0	0	0	0	0	7	0	0
........................................................................................................................................................................................................................................................................................ATATC--CAATA----ATATACAATATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCATAGTCTTACAAC-CC--TCA.........................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCTTACAAC-CC--TCAACC......................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTC-CAAGCAG----------------------------------------------CA-CTATAAAA.......................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATAGTCTTACAAC-CC--TC..........................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTTACAAC-CC--TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCAG----------------------------------------------..................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................C--TCAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGTC-CAAGCA.................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCATAGTCTTACAAC-CC--TCAACC......................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTC-CAAGCAG----------------------------------------------CA-CTATAAAATT.....................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................G-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..........................................................G-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	0	0	0	0	1	0	0
....................................................................................................................TTGCGGATATT-------------------------------------TAAC----------------TATATA--T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--TG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	11	0.09	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................TGCGGATATT-------------------------------------TAAC----------------TATATA--TA--TAGGC---------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	0	0	0	0	0	0	0	0	1	0
....................................T--------------------CG-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TATATA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................CG-------------------------------------------------------AGTTGCGGATATT-------------------------------------TAAC----------------TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATATA--T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................GCGGATATT-------------------------------------TAAC----------------TATATA--TA--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....TAAAAAA---------C------TTAAAA---T--------------------CG-------------------------------------------------------AGTTGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................GTTGCGGATATT-------------------------------------TAAC----------------TATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0

droPer2

TCTATATATAC---------A-----------GA----------------------------------------------------------------------------------------------------AACCAATTTTACAA-----------------------AT----ATATATACATGTGTATA--TATAT--ATAT---------------------------GTATATATAT--A--TATATGTAT--ATAT--ATATATAT--AT----ATA--TGA-------------------------A------------------------------------------------------------------------------------------------------------------------TA--------A---------ATG--TATGTAA---------------------AA--CGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................ATACATGTGTATA--TATAT--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0

droAna3

AATTGCT--------------------GCTC--------------------------------------------------------------------------------------------------------------------------GATTTTAC--------ATAT--------A----------CATATACAT---------------------------------ATACATATATATA--TATAT--AT--ATATATTTAATAAA--ATG--TATATAA----TATATGCGT---------GTAT-ACACAT---------------------------------------------ACAAGGTTTATTCAATT-------C----------------------------------------ACACGTA--------G---------A-----------------------------------------------------------------------------------CG-TTTGTTA--AAAAATGCATTTTCTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TTTTTAAAACA---------AAAGCTCTTG--------------------------------------------------------------------------------------------------------------------------------AAA--------AACG--------A----------TGG----TCTTAT-----------------------------ATATTTATATA----TTTGG--AAAGTTTC--AGTCA--GATTCA--CGGT--ATT--T----------------------TTGGTT-CAAAAGATTAAATCTTTCTTTAAT---TT----------TCTCAAAATTG--------------------------------------------------ATTTTTAAA-TT--CAAATCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTT-TAATTT--AT-AAATCAATATATAAAGCCTTTTAATTTTTGTAAAATA--------TTATC---------------------------------------------------------------------------------------------------------AGATCTCCCCAAATGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAGAATT--------------------------------------------------------------------------------------------------------------GAACGCATTTATTAATTTTTAAAAGTA---------------TTATTTAAAATAC--------A----------TATAT--AA--ATAC---------------------------ATACATACAT--A--CACATACAT--GTAT--GTACATAC--ATA--CATATGT----A---------------------TGTACACA--TA------ATT--------------------------ACGCTGCATTG--------------------------------------------------TTTTTTAAT-TC--CAAACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAGAA-CA---T-----A--------------------------------------AATTA-C------------------------------------------------------------------------------------------------------------------------TTTCAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACTGCATATA---------T------TTCTAT---T--------------------TATTTT---------------------------------------------------------------------------------TAGG-----------AT--------TTAT--------ATTATTATATATA--TATAT--ATAT-------------------ATATTTGGCA----ATCG--A--TTAATTTATATATAC--ATATATAT--ATATATATA--TTG------ATATTTAATATAGTTAAA--------------------G--------------------------AT---------------------------------CATTT-------------------------------------------TAACGAACTTAAATTAGT-----------------------------------------------------------------------------------------------------------------TAAATATGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCTTATAAAG---------AAACATAGGT--------AAATTTTTTTGTAACTATTTCTTAA---------------------------------------------AGATAGAGATAGCTATAAT-------------------------------------AAAG----------------TA--------------T--ATATGAAAATATTGCTTAGTTATGTGTTTTAGTTTTATTGT--G--TTTGT--GT--ATAT--ATGTATAT--ATA--AAAG--AGA-------------------------A----A----A------AAGATATCGTTATA---TTTTTCA-TGTTCTGGG----TA--------GTATATAAGACCAAGTAATCTTAGATAAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTACACAACTGTTAGGTACTAGAGCACATCGAATCAAAACAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTTTTTAATC---------T-----------AAAACAAG---GT--------------TTTTTAATTGACCAAATATCATCGCTTACTTAAATAAATATTTTATAATTCATTATAATTATTAAAGT-------------------------------------TTAC----------------TT--------------T--AAATGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCCT-------------------------------------------TAAGTG---------------------------------------------------------------------------------------------TTA-------------------------------------------------------ATGTTTTT-----------------------TTTATAA--------------------------------------AATATAAATTTCTTGTTAAATGAAC-------------------------------------------------------------C---------------------------------------------AAAATTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTATTATAATA---------TAACATCTAC--------------------------------------------------------------------------------------------------------------------------------TAT--------ATAT--------A----------TAT----ATATAT-----------------------------ATATATATATA----TATAC--ACATATAT--ACATA--TATGTA--CGCA--TAT--A---------------------CATATAT--AAA------A-------------------------------------------------------------------------------------------------------TA--------A---------ATA--TTTTAAA---------------------TA--TATCA------------------------------------------------------AAAAATTTAATTTAATAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAGTCT--------------------TTGAAA---TAAG---CC--------------TTTT---------------------------------------------------------------------------------TAGC-----------GT--------CTAT--------ATA--------TATATATAT---------------------------------ATATATATATATATATAT----AT--ATAT--ATATATAT--ATA--CATA--TA-------------------------------T------------CC--------------------------ACGGTAG---------CCACTT-------CAAAAATTTTT-------------------------------------------TAAGCGAAATAAATA--T-----------------------------------------------------------------------------------------------------------------TAAAAATGAGCCAATT-----------------------------------------TGAATAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGCCTATATCA---------TTATAAAACT--------AG---------------------------------------------------------------------------------------------------ATTTAATTG-----------------------AT----TTCGATATA------AA--TGTAA--ATAC---------------------------AA---------------------G--ATTT--TTTAA--------------------------------------------------------------------------T---TTAT-------------ACATGGTTTATTTTA----------------------------------------------TAA-TTTTGTA--------G---------C-----------------------------------------------------------------------------------CG-AAAGTGATAT----------------------A---------GGATTT----TAAAATATATTTTATTT--------------------TCAACAG--AC-A-----------------------------------------------------------A-------CCCAATCGAATGCCAGCCATGTCCTTT-------------TGAGAAATGTTC---------------------------------------------CAACCTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAATCT--------------------TTACAATTGCATA---AT---------------------------------------------------------------------------ATATA-----------------------TATATAATAACAT--------ATATATATATATATATA----------T--AT--AT-----------------------------ATATATATAT--A--TATAT--ATATAT----ATATATATATGT----ATA--TAT-------------------------ACATAT--A--------------------------------------TATT------------------------------------------------------------------AA--TA--------A---------ATG--TATATAAATATATATATATGTAAATATA-------------------------AATATATATATATATATATATATATATATAT--------------------------ATACCAAATATGTAAAT------------------------------------------------------------------------------------------------------------------------ATTA-------------------------------------------------------------------------------------------------AATTAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................ATTGCATA---AT---------------------------------------------------------------------------ATATA-----------------------TAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGCATA---AT---------------------------------------------------------------------------ATATA-----------------------TATATAATAACAT--------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATATATATATATAT--------------------------ATACCA...............................................................................................................................................................................................................................................	29	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATATATATATAT--------------------------ATACCA...............................................................................................................................................................................................................................................	28	5	0.40	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................TATATATATA----------T--AT--AT-----------------------------ATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TATAT----ATATATATATGT----ATA--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATATATATAT.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................T--A--TATAT--ATATAT----ATATATATATGT----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ATATAT--A--TATAT--ATATAT----AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA-------------------------AATATATATATATATATA............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------A----------TATATATAT---------------------------------ATATATATATATA--TATAT--AT--ATATATATATATAT--ATG--CATA--TAG-------------------------AGATAG--ATA------A--------------------------------------------------TGCGAATCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA----------------------------AATTCATTGATTT-------CTTTTCAAAACTAGGGTTAAGTATTTTGATATCCAAAGCATATCT-------GCCT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ACGAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--------A----------TATAT--AT--ATAT---------------------------GTATATATGT--A--TATATGTAT--ATAT--GTATATAC--ATA--CATATAT----A---------------------AATATACA--TA------A------------------------ATTTACGCTACACTA--------------------------------------------------GCTATTAAA-AC--TAAGTTA---A------------------------------------T-------GGTT-TTAC-------AAAAAA-------------------------------------------------------------------AAAACTTGCATCCGTTTTAATACAACTAC-----------------------TGCATAA--AA-C-----------------------------------------------------------G-------AATTATCGAGTGTCCGCTTTGTTTGTT-------------T-----------------------------------------------------------GTGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------A----------TATATATAT---------------------------------ATACCTATATATA--TATAT--AT--ATATATATCCATAT--ACA---ATA--TAA-------------------------ACGGAT--C--------------------------------------TAAT------------------------------------------------------------------GT--TA--------A-------------------------------------------GCGTT-TCACACACG-GACACAACAAT------------TTACAAGA---CG-TTT----------ATGCATTTCGA--TTCAATGAAAAATCAAG--------------------------------------------A----ATAC-----G--------------------------------------A-------------ATAAT-------------------------------------------------------------A---------------------------------------------CAAATAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................A-------------------------ACGGAT--C--------------------------------------TAAT------------------------------------------------------------------GT--TA--------A-------------------------------------------GC....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

TGCTTAAAATA---------TTGTTTTTCT---------------------TCTATTTAATTC---------------------------------------------------------------------------------AAAC-----------A----------TAT--------A----------TATATATAT---------------------------------ATATATATAT--A--TATATATAT--ATAT--ATATATAT--ATATATATA--TAA-------------------------GTATATA--TA------A------------------------CTTTCCACT----GA--------TTTTATAAGTCCACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_1331

scaffold_12723:2086858-2087008 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.8	-9.4	-9.1